AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1459540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1459540 MtrunA17_Chr7g0264491 98.148 162 3 0 9 170 396 557 2.42e-111 327
Msa1459540 MtrunA17_Chr1g0180881 62.963 162 60 0 9 170 400 561 2.43e-65 209
Msa1459540 MtrunA17_Chr3g0145921 35.570 149 96 0 17 165 421 569 1.53e-26 104
Msa1459540 MtrunA17_Chr3g0090001 33.548 155 103 0 12 166 248 402 1.88e-21 89.7
Msa1459540 MtrunA17_Chr1g0146481 32.258 155 98 2 15 168 401 549 4.45e-17 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1459540 AT2G36990.1 59.877 162 65 0 9 170 386 547 2.35e-68 217
Msa1459540 AT1G08540.1 36.000 150 96 0 17 166 419 568 1.36e-25 102
Msa1459540 AT5G13730.1 31.410 156 107 0 10 165 259 414 5.94e-18 80.5
Msa1459540 AT3G53920.1 33.117 154 102 1 15 167 417 570 1.97e-17 79.0

Find 38 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAAATCTTTGTCAGAAAT+TGG 0.213726 tig0040311:-16868 Msa1459540:CDS
CTGAGTACCTTCCTTTCTTT+TGG 0.217852 tig0040311:+16919 Msa1459540:intergenic
TCGCTTTGCTATTTCTTCTT+TGG 0.231759 tig0040311:+18724 Msa1459540:intergenic
GGAGAATTTCTATGCCCTTT+TGG 0.304880 tig0040311:-18801 Msa1459540:CDS
CTTCCGCAATCTTGCCCAAA+AGG 0.380574 tig0040311:+18786 Msa1459540:intergenic
CTTTGCTATTTCTTCTTTGG+TGG 0.415934 tig0040311:+18727 Msa1459540:intergenic
AGGAATTACAGTAGATAGGT+TGG 0.431039 tig0040311:-18699 Msa1459540:CDS
CAAGGTGTTGGGTGTGTGTA+AGG 0.434469 tig0040311:-16845 Msa1459540:CDS
CTAAGATTTGGTATTGAAGA+TGG 0.445284 tig0040311:-16895 Msa1459540:CDS
TAAGGAGAGGGTCAGACAAT+TGG 0.454557 tig0040311:-16827 Msa1459540:CDS
AAGGTACTCAGGCTAAGATT+TGG 0.454745 tig0040311:-16907 Msa1459540:CDS
GCTTGAGCTTGTTCAACGCT+TGG 0.460500 tig0040311:+16800 Msa1459540:intergenic
TTTGCTATTTCTTCTTTGGT+GGG 0.461967 tig0040311:+18728 Msa1459540:intergenic
TTTCGATGGAGCGAGCTGTA+TGG 0.462748 tig0040311:-18646 Msa1459540:CDS
AGACTCGGACACAACTTTCC+AGG 0.467003 tig0040311:-18621 Msa1459540:intron
TCAGAAATTGGCAAGGTGTT+GGG 0.477054 tig0040311:-16856 Msa1459540:CDS
TTTATATAATTGCTCAACCT+TGG 0.481097 tig0040311:+16710 Msa1459540:intergenic
TTCTCCTGAAAATAATATGC+TGG 0.484639 tig0040311:+18818 Msa1459540:intergenic
GTCAGAAATTGGCAAGGTGT+TGG 0.493182 tig0040311:-16857 Msa1459540:CDS
TTCGATGGAGCGAGCTGTAT+GGG 0.496745 tig0040311:-18645 Msa1459540:CDS
TTCCGCAATCTTGCCCAAAA+GGG 0.503563 tig0040311:+18787 Msa1459540:intergenic
GAGTAGGAATTACAGTAGAT+AGG 0.505400 tig0040311:-18703 Msa1459540:CDS
TACAAGAACTCCGCTTTCGA+TGG 0.512841 tig0040311:-18660 Msa1459540:CDS
GCGAGCTGTATGGGCAGACT+CGG 0.531907 tig0040311:-18636 Msa1459540:CDS
CAAAAGAAAGGAAGGTACTC+AGG 0.556105 tig0040311:-16918 Msa1459540:CDS
TTTGCCTCCAAAAGAAAGGA+AGG 0.566764 tig0040311:-16926 Msa1459540:CDS
GAAGAAATAGCAAAGCGAGT+AGG 0.578606 tig0040311:-18719 Msa1459540:CDS
AGCCATGTACGCAACCTCCT+AGG 0.580915 tig0040311:-16952 Msa1459540:CDS
TTGCTATTTCTTCTTTGGTG+GGG 0.584906 tig0040311:+18729 Msa1459540:intergenic
GTTGGGTGTGTGTAAGGAGA+GGG 0.590883 tig0040311:-16839 Msa1459540:CDS
CATCAAGTTGTTGACTAACA+AGG 0.596849 tig0040311:+16773 Msa1459540:intergenic
ATCTTTGTCAGAAATTGGCA+AGG 0.600345 tig0040311:-16863 Msa1459540:CDS
GTGTTGCAAAACAACTAATG+AGG 0.615119 tig0040311:-16975 Msa1459540:CDS
TCGATTCTATTTCTGTAACA+TGG 0.624614 tig0040311:-18843 Msa1459540:exon
ACAGCTCGCTCCATCGAAAG+CGG 0.630654 tig0040311:+18650 Msa1459540:intergenic
TGTTGGGTGTGTGTAAGGAG+AGG 0.638170 tig0040311:-16840 Msa1459540:CDS
TTGGAGGCAAAATACCTAGG+AGG 0.638755 tig0040311:+16938 Msa1459540:intergenic
TTGATCAATAGCATACACCA+AGG 0.737692 tig0040311:-16727 Msa1459540:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATGTATATATATATATA+TGG + tig0040311:17492-17511 Msa1459540:intergenic 10.0%
!! TATATATATATACATTGTAT+AGG - tig0040311:17494-17513 Msa1459540:intron 10.0%
!! TACATGTATTAAATAAAATA+AGG + tig0040311:18270-18289 Msa1459540:intergenic 10.0%
!!! GATTTTTTTTTTTTTTTTTG+AGG - tig0040311:18868-18887 Msa1459540:five_prime_UTR 10.0%
!! ACAATGTATATATATATATA+TGG + tig0040311:17492-17511 Msa1459540:intergenic 10.0%
!! TATATATATATACATTGTAT+AGG - tig0040311:17494-17513 Msa1459540:intron 10.0%
!! TACATGTATTAAATAAAATA+AGG + tig0040311:18270-18289 Msa1459540:intergenic 10.0%
!!! GATTTTTTTTTTTTTTTTTG+AGG - tig0040311:18868-18887 Msa1459540:five_prime_UTR 10.0%
!! ACATACTTAAATATATGATT+TGG + tig0040311:17458-17477 Msa1459540:intergenic 15.0%
!! AATATGAATAGATAGAATAA+TGG - tig0040311:18049-18068 Msa1459540:intron 15.0%
!! ACATACTTAAATATATGATT+TGG + tig0040311:17458-17477 Msa1459540:intergenic 15.0%
!! AATATGAATAGATAGAATAA+TGG - tig0040311:18049-18068 Msa1459540:intron 15.0%
!!! TGTAATGGTAGTTATTTTAT+TGG + tig0040311:16625-16644 None:intergenic 20.0%
!! AAAAAATCGTACATTAAAGA+AGG - tig0040311:16766-16785 Msa1459540:CDS 20.0%
!! AAAATTGATATTTACGTTGA+AGG + tig0040311:16937-16956 Msa1459540:intergenic 20.0%
!! TGATAACTGTTTAAACATAT+TGG - tig0040311:17113-17132 Msa1459540:intron 20.0%
!!! ACCATTAAAAAAGAAACTTT+TGG + tig0040311:17250-17269 Msa1459540:intergenic 20.0%
!!! ATTCTTTTGGTTTAGTATTT+TGG - tig0040311:17421-17440 Msa1459540:intron 20.0%
!!! TTCTTTTGGTTTAGTATTTT+GGG - tig0040311:17422-17441 Msa1459540:intron 20.0%
!! ACATGTAAGTAAACTATATT+AGG - tig0040311:18283-18302 Msa1459540:intron 20.0%
!!! TAATAAGATTTTGGTCAATT+TGG + tig0040311:18483-18502 Msa1459540:intergenic 20.0%
!!! CTGCAATTATAATAAGATTT+TGG + tig0040311:18492-18511 Msa1459540:intergenic 20.0%
!! CAAAATCTTATTATAATTGC+AGG - tig0040311:18490-18509 Msa1459540:intron 20.0%
!!! TGTAATGGTAGTTATTTTAT+TGG + tig0040311:16625-16644 Msa1459540:intergenic 20.0%
!! AAAAAATCGTACATTAAAGA+AGG - tig0040311:16766-16785 Msa1459540:CDS 20.0%
!! AAAATTGATATTTACGTTGA+AGG + tig0040311:16937-16956 Msa1459540:intergenic 20.0%
!! TGATAACTGTTTAAACATAT+TGG - tig0040311:17113-17132 Msa1459540:intron 20.0%
!!! ACCATTAAAAAAGAAACTTT+TGG + tig0040311:17250-17269 Msa1459540:intergenic 20.0%
!!! ATTCTTTTGGTTTAGTATTT+TGG - tig0040311:17421-17440 Msa1459540:intron 20.0%
!!! TTCTTTTGGTTTAGTATTTT+GGG - tig0040311:17422-17441 Msa1459540:intron 20.0%
!! ACATGTAAGTAAACTATATT+AGG - tig0040311:18283-18302 Msa1459540:intron 20.0%
!!! TAATAAGATTTTGGTCAATT+TGG + tig0040311:18483-18502 Msa1459540:intergenic 20.0%
!!! CTGCAATTATAATAAGATTT+TGG + tig0040311:18492-18511 Msa1459540:intergenic 20.0%
!! CAAAATCTTATTATAATTGC+AGG - tig0040311:18490-18509 Msa1459540:intron 20.0%
!! TCTTGTAGTCAATTACATTT+TGG + tig0040311:17161-17180 Msa1459540:intergenic 25.0%
!!! GCCAAAAGTTTCTTTTTTAA+TGG - tig0040311:17246-17265 Msa1459540:intron 25.0%
!!! TTTCTTTTTTAATGGTGTGA+GGG - tig0040311:17254-17273 Msa1459540:intron 25.0%
! GCTTATCTAATATAAACTGT+TGG + tig0040311:17297-17316 Msa1459540:intergenic 25.0%
! AGTTTATATTAGATAAGCCT+GGG - tig0040311:17299-17318 Msa1459540:intron 25.0%
! AACATACTACCATAAACATA+AGG - tig0040311:17328-17347 Msa1459540:intron 25.0%
! ACATACTACCATAAACATAA+GGG - tig0040311:17329-17348 Msa1459540:intron 25.0%
! TAAACTAGTTAAACAAAACC+AGG - tig0040311:17368-17387 Msa1459540:intron 25.0%
! TTGAAATACTGAAAAGAGAT+AGG - tig0040311:17805-17824 Msa1459540:intron 25.0%
!! AATAGATAGAATAATGGAGA+TGG - tig0040311:18055-18074 Msa1459540:intron 25.0%
! ATTATTATTGAACTTCTCTG+TGG - tig0040311:18085-18104 Msa1459540:intron 25.0%
!! TACAATTTTACAATTCCTCT+AGG - tig0040311:18178-18197 Msa1459540:intron 25.0%
!!! TATATTAGGCCTTGTTTATT+GGG - tig0040311:18297-18316 Msa1459540:intron 25.0%
! TTTATATAATTGCTCAACCT+TGG + tig0040311:18820-18839 Msa1459540:intergenic 25.0%
!! TCTTGTAGTCAATTACATTT+TGG + tig0040311:17161-17180 Msa1459540:intergenic 25.0%
!!! GCCAAAAGTTTCTTTTTTAA+TGG - tig0040311:17246-17265 Msa1459540:intron 25.0%
!!! TTTCTTTTTTAATGGTGTGA+GGG - tig0040311:17254-17273 Msa1459540:intron 25.0%
! GCTTATCTAATATAAACTGT+TGG + tig0040311:17297-17316 Msa1459540:intergenic 25.0%
! AGTTTATATTAGATAAGCCT+GGG - tig0040311:17299-17318 Msa1459540:intron 25.0%
! AACATACTACCATAAACATA+AGG - tig0040311:17328-17347 Msa1459540:intron 25.0%
! ACATACTACCATAAACATAA+GGG - tig0040311:17329-17348 Msa1459540:intron 25.0%
! TAAACTAGTTAAACAAAACC+AGG - tig0040311:17368-17387 Msa1459540:intron 25.0%
! TTGAAATACTGAAAAGAGAT+AGG - tig0040311:17805-17824 Msa1459540:intron 25.0%
!! AATAGATAGAATAATGGAGA+TGG - tig0040311:18055-18074 Msa1459540:intron 25.0%
! ATTATTATTGAACTTCTCTG+TGG - tig0040311:18085-18104 Msa1459540:intron 25.0%
!! TACAATTTTACAATTCCTCT+AGG - tig0040311:18178-18197 Msa1459540:intron 25.0%
!!! TATATTAGGCCTTGTTTATT+GGG - tig0040311:18297-18316 Msa1459540:intron 25.0%
! TTTATATAATTGCTCAACCT+TGG + tig0040311:18820-18839 Msa1459540:intergenic 25.0%
!! TCGATTCTATTTCTGTAACA+TGG - tig0040311:16684-16703 Msa1459540:three_prime_UTR 30.0%
TTCTCCTGAAAATAATATGC+TGG + tig0040311:16712-16731 Msa1459540:intergenic 30.0%
!! TTTGCTATTTCTTCTTTGGT+GGG + tig0040311:16802-16821 Msa1459540:intergenic 30.0%
ATACTTGTGCAAATTTGAGA+TGG + tig0040311:17185-17204 Msa1459540:intergenic 30.0%
ACAAGTATTAAGTTCTGTTG+TGG - tig0040311:17197-17216 Msa1459540:intron 30.0%
!!! GTTTCTTTTTTAATGGTGTG+AGG - tig0040311:17253-17272 Msa1459540:intron 30.0%
CAGTTTATATTAGATAAGCC+TGG - tig0040311:17298-17317 Msa1459540:intron 30.0%
! GGTTTCATTCATCATTCTTT+TGG - tig0040311:17408-17427 Msa1459540:intron 30.0%
AAGCTTGTGAAATATGATGT+TGG - tig0040311:17522-17541 Msa1459540:intron 30.0%
!! TATGATGTTGGTCTTGTTTA+AGG - tig0040311:17534-17553 Msa1459540:intron 30.0%
! ATTTAGTCTAGTTTAACCTG+AGG + tig0040311:17565-17584 Msa1459540:intergenic 30.0%
AAACCTACTAAATATGCATG+TGG - tig0040311:17593-17612 Msa1459540:intron 30.0%
! ATTTTGTTCCTTACAGAAGT+TGG - tig0040311:17645-17664 Msa1459540:intron 30.0%
TCAATTCTGTAATAAGAGAG+TGG - tig0040311:17928-17947 Msa1459540:intron 30.0%
TAAGAGAGTGGATCAAATAT+AGG - tig0040311:17940-17959 Msa1459540:intron 30.0%
AAGAGAGTGGATCAAATATA+GGG - tig0040311:17941-17960 Msa1459540:intron 30.0%
TGTTTATGTTGGATTACCTT+GGG + tig0040311:18224-18243 Msa1459540:intergenic 30.0%
TTGTTTATGTTGGATTACCT+TGG + tig0040311:18225-18244 Msa1459540:intergenic 30.0%
!! CTATATTAGGCCTTGTTTAT+TGG - tig0040311:18296-18315 Msa1459540:intron 30.0%
TTAATTTATGCCTGTATGTG+AGG + tig0040311:18395-18414 Msa1459540:intergenic 30.0%
! CTAAGATTTGGTATTGAAGA+TGG - tig0040311:18632-18651 Msa1459540:CDS 30.0%
GAGAAATCTTTGTCAGAAAT+TGG - tig0040311:18659-18678 Msa1459540:CDS 30.0%
!! TCGATTCTATTTCTGTAACA+TGG - tig0040311:16684-16703 Msa1459540:three_prime_UTR 30.0%
TTCTCCTGAAAATAATATGC+TGG + tig0040311:16712-16731 Msa1459540:intergenic 30.0%
!! TTTGCTATTTCTTCTTTGGT+GGG + tig0040311:16802-16821 Msa1459540:intergenic 30.0%
ATACTTGTGCAAATTTGAGA+TGG + tig0040311:17185-17204 Msa1459540:intergenic 30.0%
ACAAGTATTAAGTTCTGTTG+TGG - tig0040311:17197-17216 Msa1459540:intron 30.0%
!!! GTTTCTTTTTTAATGGTGTG+AGG - tig0040311:17253-17272 Msa1459540:intron 30.0%
CAGTTTATATTAGATAAGCC+TGG - tig0040311:17298-17317 Msa1459540:intron 30.0%
! GGTTTCATTCATCATTCTTT+TGG - tig0040311:17408-17427 Msa1459540:intron 30.0%
AAGCTTGTGAAATATGATGT+TGG - tig0040311:17522-17541 Msa1459540:intron 30.0%
!! TATGATGTTGGTCTTGTTTA+AGG - tig0040311:17534-17553 Msa1459540:intron 30.0%
! ATTTAGTCTAGTTTAACCTG+AGG + tig0040311:17565-17584 Msa1459540:intergenic 30.0%
AAACCTACTAAATATGCATG+TGG - tig0040311:17593-17612 Msa1459540:intron 30.0%
! ATTTTGTTCCTTACAGAAGT+TGG - tig0040311:17645-17664 Msa1459540:intron 30.0%
TCAATTCTGTAATAAGAGAG+TGG - tig0040311:17928-17947 Msa1459540:intron 30.0%
TAAGAGAGTGGATCAAATAT+AGG - tig0040311:17940-17959 Msa1459540:intron 30.0%
AAGAGAGTGGATCAAATATA+GGG - tig0040311:17941-17960 Msa1459540:intron 30.0%
TGTTTATGTTGGATTACCTT+GGG + tig0040311:18224-18243 Msa1459540:intergenic 30.0%
TTGTTTATGTTGGATTACCT+TGG + tig0040311:18225-18244 Msa1459540:intergenic 30.0%
!! CTATATTAGGCCTTGTTTAT+TGG - tig0040311:18296-18315 Msa1459540:intron 30.0%
TTAATTTATGCCTGTATGTG+AGG + tig0040311:18395-18414 Msa1459540:intergenic 30.0%
! CTAAGATTTGGTATTGAAGA+TGG - tig0040311:18632-18651 Msa1459540:CDS 30.0%
GAGAAATCTTTGTCAGAAAT+TGG - tig0040311:18659-18678 Msa1459540:CDS 30.0%
! GGTACCAGCATATTATTTTC+AGG - tig0040311:16705-16724 Msa1459540:three_prime_UTR 35.0%
! GAGAATTTCTATGCCCTTTT+GGG - tig0040311:16727-16746 Msa1459540:three_prime_UTR 35.0%
!! TTGCTATTTCTTCTTTGGTG+GGG + tig0040311:16801-16820 Msa1459540:intergenic 35.0%
!! CTTTGCTATTTCTTCTTTGG+TGG + tig0040311:16803-16822 Msa1459540:intergenic 35.0%
!! TCGCTTTGCTATTTCTTCTT+TGG + tig0040311:16806-16825 Msa1459540:intergenic 35.0%
GAGTAGGAATTACAGTAGAT+AGG - tig0040311:16824-16843 Msa1459540:CDS 35.0%
AGGAATTACAGTAGATAGGT+TGG - tig0040311:16828-16847 Msa1459540:CDS 35.0%
TAGTAAGTGATATCGTTGCA+GGG + tig0040311:16961-16980 Msa1459540:intergenic 35.0%
ATCAGTGCAAGCAAAAAACT+CGG + tig0040311:17097-17116 Msa1459540:intergenic 35.0%
TTAAGTTCTGTTGTGGATGA+TGG - tig0040311:17204-17223 Msa1459540:intron 35.0%
GCTTGATACCCTTATGTTTA+TGG + tig0040311:17340-17359 Msa1459540:intergenic 35.0%
ACTAGTTAAACAAAACCAGG+TGG - tig0040311:17371-17390 Msa1459540:intron 35.0%
TTAAACAAAACCAGGTGGTT+TGG - tig0040311:17376-17395 Msa1459540:intron 35.0%
CAAATGATCCAACTTCTGTA+AGG + tig0040311:17656-17675 Msa1459540:intergenic 35.0%
!! CATTGAGTTTACTTTTGTGC+TGG + tig0040311:17756-17775 Msa1459540:intergenic 35.0%
ATTGCAACATTAGAGAGAGT+CGG - tig0040311:17835-17854 Msa1459540:intron 35.0%
! TCTTGCTATGTCTAACGATT+GGG + tig0040311:17970-17989 Msa1459540:intergenic 35.0%
GACCAAGAAAAGCTAACTAT+TGG - tig0040311:17988-18007 Msa1459540:intron 35.0%
!!! CTCCAATAGTTAGCTTTTCT+TGG + tig0040311:17993-18012 Msa1459540:intergenic 35.0%
!! TACGATTCGGTTGTTTATGT+TGG + tig0040311:18235-18254 Msa1459540:intergenic 35.0%
GACGAACATTTACTACGATT+CGG + tig0040311:18248-18267 Msa1459540:intergenic 35.0%
AGCATGAATATATCTCTAGC+AGG + tig0040311:18323-18342 Msa1459540:intergenic 35.0%
GAGATATATTCATGCTAGAG+CGG - tig0040311:18327-18346 Msa1459540:intron 35.0%
AGATATATTCATGCTAGAGC+GGG - tig0040311:18328-18347 Msa1459540:intron 35.0%
! GTTTTGCAACACATACAGTT+GGG + tig0040311:18544-18563 Msa1459540:intergenic 35.0%
! TGTTTTGCAACACATACAGT+TGG + tig0040311:18545-18564 Msa1459540:intergenic 35.0%
GTGTTGCAAAACAACTAATG+AGG - tig0040311:18552-18571 Msa1459540:intron 35.0%
! GTATTTTGCCTCCAAAAGAA+AGG - tig0040311:18597-18616 Msa1459540:intron 35.0%
ATCTTTGTCAGAAATTGGCA+AGG - tig0040311:18664-18683 Msa1459540:CDS 35.0%
! CATCAAGTTGTTGACTAACA+AGG + tig0040311:18757-18776 Msa1459540:intergenic 35.0%
TTGATCAATAGCATACACCA+AGG - tig0040311:18800-18819 Msa1459540:CDS 35.0%
! GGTACCAGCATATTATTTTC+AGG - tig0040311:16705-16724 Msa1459540:three_prime_UTR 35.0%
! GAGAATTTCTATGCCCTTTT+GGG - tig0040311:16727-16746 Msa1459540:three_prime_UTR 35.0%
!! TTGCTATTTCTTCTTTGGTG+GGG + tig0040311:16801-16820 Msa1459540:intergenic 35.0%
!! CTTTGCTATTTCTTCTTTGG+TGG + tig0040311:16803-16822 Msa1459540:intergenic 35.0%
!! TCGCTTTGCTATTTCTTCTT+TGG + tig0040311:16806-16825 Msa1459540:intergenic 35.0%
GAGTAGGAATTACAGTAGAT+AGG - tig0040311:16824-16843 Msa1459540:CDS 35.0%
AGGAATTACAGTAGATAGGT+TGG - tig0040311:16828-16847 Msa1459540:CDS 35.0%
TAGTAAGTGATATCGTTGCA+GGG + tig0040311:16961-16980 Msa1459540:intergenic 35.0%
ATCAGTGCAAGCAAAAAACT+CGG + tig0040311:17097-17116 Msa1459540:intergenic 35.0%
TTAAGTTCTGTTGTGGATGA+TGG - tig0040311:17204-17223 Msa1459540:intron 35.0%
GCTTGATACCCTTATGTTTA+TGG + tig0040311:17340-17359 Msa1459540:intergenic 35.0%
ACTAGTTAAACAAAACCAGG+TGG - tig0040311:17371-17390 Msa1459540:intron 35.0%
TTAAACAAAACCAGGTGGTT+TGG - tig0040311:17376-17395 Msa1459540:intron 35.0%
CAAATGATCCAACTTCTGTA+AGG + tig0040311:17656-17675 Msa1459540:intergenic 35.0%
!! CATTGAGTTTACTTTTGTGC+TGG + tig0040311:17756-17775 Msa1459540:intergenic 35.0%
ATTGCAACATTAGAGAGAGT+CGG - tig0040311:17835-17854 Msa1459540:intron 35.0%
! TCTTGCTATGTCTAACGATT+GGG + tig0040311:17970-17989 Msa1459540:intergenic 35.0%
GACCAAGAAAAGCTAACTAT+TGG - tig0040311:17988-18007 Msa1459540:intron 35.0%
!!! CTCCAATAGTTAGCTTTTCT+TGG + tig0040311:17993-18012 Msa1459540:intergenic 35.0%
!! TACGATTCGGTTGTTTATGT+TGG + tig0040311:18235-18254 Msa1459540:intergenic 35.0%
GACGAACATTTACTACGATT+CGG + tig0040311:18248-18267 Msa1459540:intergenic 35.0%
AGCATGAATATATCTCTAGC+AGG + tig0040311:18323-18342 Msa1459540:intergenic 35.0%
GAGATATATTCATGCTAGAG+CGG - tig0040311:18327-18346 Msa1459540:intron 35.0%
AGATATATTCATGCTAGAGC+GGG - tig0040311:18328-18347 Msa1459540:intron 35.0%
! GTTTTGCAACACATACAGTT+GGG + tig0040311:18544-18563 Msa1459540:intergenic 35.0%
! TGTTTTGCAACACATACAGT+TGG + tig0040311:18545-18564 Msa1459540:intergenic 35.0%
GTGTTGCAAAACAACTAATG+AGG - tig0040311:18552-18571 Msa1459540:intron 35.0%
! GTATTTTGCCTCCAAAAGAA+AGG - tig0040311:18597-18616 Msa1459540:intron 35.0%
ATCTTTGTCAGAAATTGGCA+AGG - tig0040311:18664-18683 Msa1459540:CDS 35.0%
! CATCAAGTTGTTGACTAACA+AGG + tig0040311:18757-18776 Msa1459540:intergenic 35.0%
TTGATCAATAGCATACACCA+AGG - tig0040311:18800-18819 Msa1459540:CDS 35.0%
! GGAGAATTTCTATGCCCTTT+TGG - tig0040311:16726-16745 Msa1459540:three_prime_UTR 40.0%
GAAGAAATAGCAAAGCGAGT+AGG - tig0040311:16808-16827 Msa1459540:CDS 40.0%
CTAGTAAGTGATATCGTTGC+AGG + tig0040311:16962-16981 Msa1459540:intergenic 40.0%
! TTCAACTCCCCATTTTGTAC+TGG - tig0040311:17052-17071 Msa1459540:intron 40.0%
! CTTGTTTAAGGTTGATCCTC+AGG - tig0040311:17546-17565 Msa1459540:intron 40.0%
CTGCCACATGCATATTTAGT+AGG + tig0040311:17599-17618 Msa1459540:intergenic 40.0%
AATATGCATGTGGCAGTGAT+TGG - tig0040311:17603-17622 Msa1459540:intron 40.0%
! TCAAGAGGGTGCATATTAAC+AGG + tig0040311:17687-17706 Msa1459540:intergenic 40.0%
GTTAATATGCACCCTCTTGA+TGG - tig0040311:17687-17706 Msa1459540:intron 40.0%
AAACAGGCATACCATCAAGA+GGG + tig0040311:17701-17720 Msa1459540:intergenic 40.0%
AAAACAGGCATACCATCAAG+AGG + tig0040311:17702-17721 Msa1459540:intergenic 40.0%
!!! ATGCCTGTTTTTGCAAGTGA+CGG - tig0040311:17711-17730 Msa1459540:intron 40.0%
TTGCAACATTAGAGAGAGTC+GGG - tig0040311:17836-17855 Msa1459540:intron 40.0%
AGATGCTTGAATCTCGACTT+AGG - tig0040311:17878-17897 Msa1459540:intron 40.0%
AATCTCGACTTAGGTGGTTT+GGG - tig0040311:17887-17906 Msa1459540:intron 40.0%
! GTCTTGCTATGTCTAACGAT+TGG + tig0040311:17971-17990 Msa1459540:intergenic 40.0%
AACAGAGTGGTTACACAACA+GGG - tig0040311:18118-18137 Msa1459540:intron 40.0%
!! TGTATGATGGGTGTATGACA+CGG - tig0040311:18351-18370 Msa1459540:intron 40.0%
TTTATGCCTGTATGTGAGGT+CGG + tig0040311:18391-18410 Msa1459540:intergenic 40.0%
!! CTTTTGGAGGCAAAATACCT+AGG + tig0040311:18595-18614 Msa1459540:intergenic 40.0%
TTTGCCTCCAAAAGAAAGGA+AGG - tig0040311:18601-18620 Msa1459540:intron 40.0%
! AGTACCTTCCTTTCTTTTGG+AGG + tig0040311:18608-18627 Msa1459540:intergenic 40.0%
! CTGAGTACCTTCCTTTCTTT+TGG + tig0040311:18611-18630 Msa1459540:intergenic 40.0%
!! CAAAAGAAAGGAAGGTACTC+AGG - tig0040311:18609-18628 Msa1459540:intron 40.0%
! AAGGTACTCAGGCTAAGATT+TGG - tig0040311:18620-18639 Msa1459540:intron 40.0%
! TCAGAAATTGGCAAGGTGTT+GGG - tig0040311:18671-18690 Msa1459540:CDS 40.0%
! GGAGAATTTCTATGCCCTTT+TGG - tig0040311:16726-16745 Msa1459540:three_prime_UTR 40.0%
GAAGAAATAGCAAAGCGAGT+AGG - tig0040311:16808-16827 Msa1459540:CDS 40.0%
CTAGTAAGTGATATCGTTGC+AGG + tig0040311:16962-16981 Msa1459540:intergenic 40.0%
! TTCAACTCCCCATTTTGTAC+TGG - tig0040311:17052-17071 Msa1459540:intron 40.0%
! CTTGTTTAAGGTTGATCCTC+AGG - tig0040311:17546-17565 Msa1459540:intron 40.0%
CTGCCACATGCATATTTAGT+AGG + tig0040311:17599-17618 Msa1459540:intergenic 40.0%
AATATGCATGTGGCAGTGAT+TGG - tig0040311:17603-17622 Msa1459540:intron 40.0%
! TCAAGAGGGTGCATATTAAC+AGG + tig0040311:17687-17706 Msa1459540:intergenic 40.0%
GTTAATATGCACCCTCTTGA+TGG - tig0040311:17687-17706 Msa1459540:intron 40.0%
AAACAGGCATACCATCAAGA+GGG + tig0040311:17701-17720 Msa1459540:intergenic 40.0%
AAAACAGGCATACCATCAAG+AGG + tig0040311:17702-17721 Msa1459540:intergenic 40.0%
!!! ATGCCTGTTTTTGCAAGTGA+CGG - tig0040311:17711-17730 Msa1459540:intron 40.0%
TTGCAACATTAGAGAGAGTC+GGG - tig0040311:17836-17855 Msa1459540:intron 40.0%
AGATGCTTGAATCTCGACTT+AGG - tig0040311:17878-17897 Msa1459540:intron 40.0%
AATCTCGACTTAGGTGGTTT+GGG - tig0040311:17887-17906 Msa1459540:intron 40.0%
! GTCTTGCTATGTCTAACGAT+TGG + tig0040311:17971-17990 Msa1459540:intergenic 40.0%
AACAGAGTGGTTACACAACA+GGG - tig0040311:18118-18137 Msa1459540:intron 40.0%
!! TGTATGATGGGTGTATGACA+CGG - tig0040311:18351-18370 Msa1459540:intron 40.0%
TTTATGCCTGTATGTGAGGT+CGG + tig0040311:18391-18410 Msa1459540:intergenic 40.0%
!! CTTTTGGAGGCAAAATACCT+AGG + tig0040311:18595-18614 Msa1459540:intergenic 40.0%
TTTGCCTCCAAAAGAAAGGA+AGG - tig0040311:18601-18620 Msa1459540:intron 40.0%
! AGTACCTTCCTTTCTTTTGG+AGG + tig0040311:18608-18627 Msa1459540:intergenic 40.0%
! CTGAGTACCTTCCTTTCTTT+TGG + tig0040311:18611-18630 Msa1459540:intergenic 40.0%
!! CAAAAGAAAGGAAGGTACTC+AGG - tig0040311:18609-18628 Msa1459540:intron 40.0%
! AAGGTACTCAGGCTAAGATT+TGG - tig0040311:18620-18639 Msa1459540:intron 40.0%
! TCAGAAATTGGCAAGGTGTT+GGG - tig0040311:18671-18690 Msa1459540:CDS 40.0%
TTCCGCAATCTTGCCCAAAA+GGG + tig0040311:16743-16762 Msa1459540:intergenic 45.0%
TACAAGAACTCCGCTTTCGA+TGG - tig0040311:16867-16886 Msa1459540:CDS 45.0%
CCACTCACCAGTACAAAATG+GGG + tig0040311:17062-17081 Msa1459540:intergenic 45.0%
GCCACTCACCAGTACAAAAT+GGG + tig0040311:17063-17082 Msa1459540:intergenic 45.0%
GGTAGTATGTTATGCTTCCC+AGG + tig0040311:17319-17338 Msa1459540:intergenic 45.0%
CAGATCAAAACCAAACCACC+TGG + tig0040311:17389-17408 Msa1459540:intergenic 45.0%
!!! CAGGTGGTTTGGTTTTGATC+TGG - tig0040311:17387-17406 Msa1459540:intron 45.0%
ACTCCGTCACTTGCAAAAAC+AGG + tig0040311:17717-17736 Msa1459540:intergenic 45.0%
!! TTTTGCAAGTGACGGAGTGT+TGG - tig0040311:17719-17738 Msa1459540:intron 45.0%
! TTTGCAAGTGACGGAGTGTT+GGG - tig0040311:17720-17739 Msa1459540:intron 45.0%
TGCAACATTAGAGAGAGTCG+GGG - tig0040311:17837-17856 Msa1459540:intron 45.0%
TGCTTGAATCTCGACTTAGG+TGG - tig0040311:17881-17900 Msa1459540:intron 45.0%
GAATCTCGACTTAGGTGGTT+TGG - tig0040311:17886-17905 Msa1459540:intron 45.0%
TGGATAACTGTCCAACAGAG+TGG - tig0040311:18105-18124 Msa1459540:intron 45.0%
CTGTTGTGTAACCACTCTGT+TGG + tig0040311:18119-18138 Msa1459540:intergenic 45.0%
CAACAGAGTGGTTACACAAC+AGG - tig0040311:18117-18136 Msa1459540:intron 45.0%
ACAGAGTGGTTACACAACAG+GGG - tig0040311:18119-18138 Msa1459540:intron 45.0%
CTAGGCTCTCTAATTCCTAG+AGG + tig0040311:18196-18215 Msa1459540:intergenic 45.0%
TCTAGCAGGCCCAATAAACA+AGG + tig0040311:18309-18328 Msa1459540:intergenic 45.0%
TTGGAGGCAAAATACCTAGG+AGG + tig0040311:18592-18611 Msa1459540:intergenic 45.0%
GTCAGAAATTGGCAAGGTGT+TGG - tig0040311:18670-18689 Msa1459540:CDS 45.0%
TAAGGAGAGGGTCAGACAAT+TGG - tig0040311:18700-18719 Msa1459540:CDS 45.0%
TTCCGCAATCTTGCCCAAAA+GGG + tig0040311:16743-16762 Msa1459540:intergenic 45.0%
TACAAGAACTCCGCTTTCGA+TGG - tig0040311:16867-16886 Msa1459540:CDS 45.0%
CCACTCACCAGTACAAAATG+GGG + tig0040311:17062-17081 Msa1459540:intergenic 45.0%
GCCACTCACCAGTACAAAAT+GGG + tig0040311:17063-17082 Msa1459540:intergenic 45.0%
GGTAGTATGTTATGCTTCCC+AGG + tig0040311:17319-17338 Msa1459540:intergenic 45.0%
CAGATCAAAACCAAACCACC+TGG + tig0040311:17389-17408 Msa1459540:intergenic 45.0%
!!! CAGGTGGTTTGGTTTTGATC+TGG - tig0040311:17387-17406 Msa1459540:intron 45.0%
ACTCCGTCACTTGCAAAAAC+AGG + tig0040311:17717-17736 Msa1459540:intergenic 45.0%
!! TTTTGCAAGTGACGGAGTGT+TGG - tig0040311:17719-17738 Msa1459540:intron 45.0%
! TTTGCAAGTGACGGAGTGTT+GGG - tig0040311:17720-17739 Msa1459540:intron 45.0%
TGCAACATTAGAGAGAGTCG+GGG - tig0040311:17837-17856 Msa1459540:intron 45.0%
TGCTTGAATCTCGACTTAGG+TGG - tig0040311:17881-17900 Msa1459540:intron 45.0%
GAATCTCGACTTAGGTGGTT+TGG - tig0040311:17886-17905 Msa1459540:intron 45.0%
TGGATAACTGTCCAACAGAG+TGG - tig0040311:18105-18124 Msa1459540:intron 45.0%
CTGTTGTGTAACCACTCTGT+TGG + tig0040311:18119-18138 Msa1459540:intergenic 45.0%
CAACAGAGTGGTTACACAAC+AGG - tig0040311:18117-18136 Msa1459540:intron 45.0%
ACAGAGTGGTTACACAACAG+GGG - tig0040311:18119-18138 Msa1459540:intron 45.0%
CTAGGCTCTCTAATTCCTAG+AGG + tig0040311:18196-18215 Msa1459540:intergenic 45.0%
TCTAGCAGGCCCAATAAACA+AGG + tig0040311:18309-18328 Msa1459540:intergenic 45.0%
TTGGAGGCAAAATACCTAGG+AGG + tig0040311:18592-18611 Msa1459540:intergenic 45.0%
GTCAGAAATTGGCAAGGTGT+TGG - tig0040311:18670-18689 Msa1459540:CDS 45.0%
TAAGGAGAGGGTCAGACAAT+TGG - tig0040311:18700-18719 Msa1459540:CDS 45.0%
!! ATTAAAAAAAATTAATGTAA+TGG + tig0040311:16640-16659 None:intergenic 5.0%
!!! ATTTTTTTTTTTTTTTTTGA+GGG - tig0040311:18869-18888 Msa1459540:five_prime_UTR 5.0%
!! ATTAAAAAAAATTAATGTAA+TGG + tig0040311:16640-16659 Msa1459540:intergenic 5.0%
!!! ATTTTTTTTTTTTTTTTTGA+GGG - tig0040311:18869-18888 Msa1459540:five_prime_UTR 5.0%
! TGCCCTTTTGGGCAAGATTG+CGG - tig0040311:16738-16757 Msa1459540:exon 50.0%
CTTCCGCAATCTTGCCCAAA+AGG + tig0040311:16744-16763 Msa1459540:intergenic 50.0%
TTTCGATGGAGCGAGCTGTA+TGG - tig0040311:16881-16900 Msa1459540:CDS 50.0%
TTCGATGGAGCGAGCTGTAT+GGG - tig0040311:16882-16901 Msa1459540:CDS 50.0%
AGACTCGGACACAACTTTCC+AGG - tig0040311:16906-16925 Msa1459540:CDS 50.0%
TCGGACACAACTTTCCAGGT+AGG - tig0040311:16910-16929 Msa1459540:CDS 50.0%
CGGACACAACTTTCCAGGTA+GGG - tig0040311:16911-16930 Msa1459540:CDS 50.0%
TTTACGTTGAAGGCCCTACC+TGG + tig0040311:16927-16946 Msa1459540:intergenic 50.0%
!! CCCCATTTTGTACTGGTGAG+TGG - tig0040311:17059-17078 Msa1459540:intron 50.0%
CGCCACTCACCAGTACAAAA+TGG + tig0040311:17064-17083 Msa1459540:intergenic 50.0%
GGATTACCTTGGGAGAGACT+AGG + tig0040311:18214-18233 Msa1459540:intergenic 50.0%
ATGCTAGAGCGGGTGTATGA+TGG - tig0040311:18338-18357 Msa1459540:intron 50.0%
TGCTAGAGCGGGTGTATGAT+GGG - tig0040311:18339-18358 Msa1459540:intron 50.0%
CTGTAACCGACCTCACATAC+AGG - tig0040311:18382-18401 Msa1459540:intron 50.0%
TACCTAGGAGGTTGCGTACA+TGG + tig0040311:18580-18599 Msa1459540:intergenic 50.0%
!! CAAGGTGTTGGGTGTGTGTA+AGG - tig0040311:18682-18701 Msa1459540:CDS 50.0%
TGTTGGGTGTGTGTAAGGAG+AGG - tig0040311:18687-18706 Msa1459540:CDS 50.0%
GTTGGGTGTGTGTAAGGAGA+GGG - tig0040311:18688-18707 Msa1459540:CDS 50.0%
! GCTTGAGCTTGTTCAACGCT+TGG + tig0040311:18730-18749 Msa1459540:intergenic 50.0%
! TGCCCTTTTGGGCAAGATTG+CGG - tig0040311:16738-16757 Msa1459540:exon 50.0%
CTTCCGCAATCTTGCCCAAA+AGG + tig0040311:16744-16763 Msa1459540:intergenic 50.0%
TTTCGATGGAGCGAGCTGTA+TGG - tig0040311:16881-16900 Msa1459540:CDS 50.0%
TTCGATGGAGCGAGCTGTAT+GGG - tig0040311:16882-16901 Msa1459540:CDS 50.0%
AGACTCGGACACAACTTTCC+AGG - tig0040311:16906-16925 Msa1459540:CDS 50.0%
TCGGACACAACTTTCCAGGT+AGG - tig0040311:16910-16929 Msa1459540:CDS 50.0%
CGGACACAACTTTCCAGGTA+GGG - tig0040311:16911-16930 Msa1459540:CDS 50.0%
TTTACGTTGAAGGCCCTACC+TGG + tig0040311:16927-16946 Msa1459540:intergenic 50.0%
!! CCCCATTTTGTACTGGTGAG+TGG - tig0040311:17059-17078 Msa1459540:intron 50.0%
CGCCACTCACCAGTACAAAA+TGG + tig0040311:17064-17083 Msa1459540:intergenic 50.0%
GGATTACCTTGGGAGAGACT+AGG + tig0040311:18214-18233 Msa1459540:intergenic 50.0%
ATGCTAGAGCGGGTGTATGA+TGG - tig0040311:18338-18357 Msa1459540:intron 50.0%
TGCTAGAGCGGGTGTATGAT+GGG - tig0040311:18339-18358 Msa1459540:intron 50.0%
CTGTAACCGACCTCACATAC+AGG - tig0040311:18382-18401 Msa1459540:intron 50.0%
TACCTAGGAGGTTGCGTACA+TGG + tig0040311:18580-18599 Msa1459540:intergenic 50.0%
!! CAAGGTGTTGGGTGTGTGTA+AGG - tig0040311:18682-18701 Msa1459540:CDS 50.0%
TGTTGGGTGTGTGTAAGGAG+AGG - tig0040311:18687-18706 Msa1459540:CDS 50.0%
GTTGGGTGTGTGTAAGGAGA+GGG - tig0040311:18688-18707 Msa1459540:CDS 50.0%
! GCTTGAGCTTGTTCAACGCT+TGG + tig0040311:18730-18749 Msa1459540:intergenic 50.0%
ACAGCTCGCTCCATCGAAAG+CGG + tig0040311:16880-16899 Msa1459540:intergenic 55.0%
AGAGAGCCTAGTCTCTCCCA+AGG - tig0040311:18205-18224 Msa1459540:intron 55.0%
AGCCATGTACGCAACCTCCT+AGG - tig0040311:18575-18594 Msa1459540:intron 55.0%
ACAGCTCGCTCCATCGAAAG+CGG + tig0040311:16880-16899 Msa1459540:intergenic 55.0%
AGAGAGCCTAGTCTCTCCCA+AGG - tig0040311:18205-18224 Msa1459540:intron 55.0%
AGCCATGTACGCAACCTCCT+AGG - tig0040311:18575-18594 Msa1459540:intron 55.0%
GCGAGCTGTATGGGCAGACT+CGG - tig0040311:16891-16910 Msa1459540:CDS 60.0%
GCGAGCTGTATGGGCAGACT+CGG - tig0040311:16891-16910 Msa1459540:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0040311 gene 16614 18935 16614 ID=Msa1459540;Name=Msa1459540
tig0040311 mRNA 16614 18935 16614 ID=Msa1459540-mRNA-1;Parent=Msa1459540;Name=Msa1459540-mRNA-1;_AED=0.00;_eAED=0.00;_QI=89|1|1|1|1|1|2|136|170
tig0040311 exon 16614 17037 16614 ID=Msa1459540-mRNA-1:exon:22289;Parent=Msa1459540-mRNA-1
tig0040311 exon 18622 18935 18622 ID=Msa1459540-mRNA-1:exon:22288;Parent=Msa1459540-mRNA-1
tig0040311 five_prime_UTR 18847 18935 18847 ID=Msa1459540-mRNA-1:five_prime_utr;Parent=Msa1459540-mRNA-1
tig0040311 CDS 18622 18846 18622 ID=Msa1459540-mRNA-1:cds;Parent=Msa1459540-mRNA-1
tig0040311 CDS 16750 17037 16750 ID=Msa1459540-mRNA-1:cds;Parent=Msa1459540-mRNA-1
tig0040311 three_prime_UTR 16614 16749 16614 ID=Msa1459540-mRNA-1:three_prime_utr;Parent=Msa1459540-mRNA-1
Gene Sequence

>Msa1459540

ATGGTACCAGCATATTATTTTCAGGAGAATTTCTATGCCCTTTTGGGCAAGATTGCGGAAGCAAAAAAATCGTACATTAAAGAAGGAAATCTTCACCCCACCAAAGAAGAAATAGCAAAGCGAGTAGGAATTACAGTAGATAGGTTGGAAATGTTGCTATTTTCTACAAGAACTCCGCTTTCGATGGAGCGAGCTGTATGGGCAGACTCGGACACAACTTTCCAGGAGATTACTGCAGACTCTGCAATTGAGATCCCAACTGTATGTGTTGCAAAACAACTAATGAGGAGCCATGTACGCAACCTCCTAGGTATTTTGCCTCCAAAAGAAAGGAAGGTACTCAGGCTAAGATTTGGTATTGAAGATGGCTATGAGAAATCTTTGTCAGAAATTGGCAAGGTGTTGGGTGTGTGTAAGGAGAGGGTCAGACAATTGGAGAGCCAAGCGTTGAACAAGCTCAAGCAGTGCCTTGTTAGTCAACAACTTGATGCATATGTAGACTTGATTGTATAG

Protein sequence

>Msa1459540

MVPAYYFQENFYALLGKIAEAKKSYIKEGNLHPTKEEIAKRVGITVDRLEMLLFSTRTPLSMERAVWADSDTTFQEITADSAIEIPTVCVAKQLMRSHVRNLLGILPPKERKVLRLRFGIEDGYEKSLSEIGKVLGVCKERVRQLESQALNKLKQCLVSQQLDAYVDLIV*