AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0545230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0545230 MtrunA17_Chr4g0025891 98.404 188 3 0 1 188 1 188 2.78e-134 373
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0545230 AT2G27290.1 63.212 193 51 5 4 181 3 190 2.46e-63 194

Find 48 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTATTGTTGACAATTATA+TGG 0.269803 4_1:+35170190 None:intergenic
CGTTGTCATTGTTGGATACT+TGG 0.270203 4_1:+35171870 None:intergenic
TACTTCTTGGTTACTTCTTC+AGG 0.280999 4_1:+35171676 None:intergenic
ACAAAGCTGCATCTCCAATT+AGG 0.288679 4_1:-35170400 Msa0545230:CDS
TTGATTATCAAGATTGTATA+GGG 0.301442 4_1:+35171930 None:intergenic
AAGGAGTTGCTGGCAAAATA+TGG 0.314060 4_1:-35170683 Msa0545230:CDS
AGCTTCAAGACCATACTTCT+TGG 0.339383 4_1:+35171663 None:intergenic
ATGGTCTTGAAGCTGGTCTT+TGG 0.345812 4_1:-35171654 Msa0545230:CDS
GGAGATGAAAATATGATTAC+AGG 0.350066 4_1:+35170256 None:intergenic
TTTGATTATCAAGATTGTAT+AGG 0.354084 4_1:+35171929 None:intergenic
ACTGTGGGTGGAAACCTAAT+TGG 0.379765 4_1:+35170386 None:intergenic
TGATCAAGCCAAGGAGTTGC+TGG 0.407305 4_1:-35170693 Msa0545230:CDS
CAATCCAACCAGCTACGATT+GGG 0.413841 4_1:+35170354 None:intergenic
AAAAGTCGGTACCTTTGCTT+TGG 0.429669 4_1:-35170435 Msa0545230:CDS
GAAGAAGTAACCAAGAAGTA+TGG 0.441811 4_1:-35171673 Msa0545230:CDS
ATTAGATTTACGTGACTGAA+TGG 0.446882 4_1:+35171771 None:intergenic
CCAATCCAACCAGCTACGAT+TGG 0.459512 4_1:+35170353 None:intergenic
TTCAGGTGAAGATTGCTTTG+AGG 0.462272 4_1:+35171693 None:intergenic
TGTTATGTATTAATCAATGC+TGG 0.464473 4_1:-35170608 Msa0545230:CDS
CCAATCGTAGCTGGTTGGAT+TGG 0.470086 4_1:-35170353 Msa0545230:CDS
ATTGCTATAATTGATTTGAA+TGG 0.483015 4_1:-35170128 Msa0545230:three_prime_UTR
AAGAAGTATGGTCTTGAAGC+TGG 0.499317 4_1:-35171661 Msa0545230:CDS
TGTTCAAACTTTGCTTCAGA+AGG 0.506472 4_1:-35170579 Msa0545230:intron
GCTCTTACCCCAATCGTAGC+TGG 0.519207 4_1:-35170362 Msa0545230:CDS
GGGGACCAACAGAAATCAAA+AGG 0.520589 4_1:-35170716 Msa0545230:CDS
TAAAGATAAGTAGCTAATAG+TGG 0.534351 4_1:-35170318 Msa0545230:exon
TTACCCCAATCGTAGCTGGT+TGG 0.540207 4_1:-35170358 Msa0545230:CDS
CTGTGGAAACAATATTCCTC+TGG 0.541815 4_1:+35170229 None:intergenic
AGAGATCAATGACAGAGTAA+TGG 0.561630 4_1:+35170640 None:intergenic
TCTTGAAGCTGGTCTTTGGA+AGG 0.564484 4_1:-35171650 Msa0545230:intron
GAATATTGTTTCCACAGTCG+TGG 0.574282 4_1:-35170223 Msa0545230:three_prime_UTR
AAACAATATTCCTCTGGCAA+TGG 0.578995 4_1:+35170235 None:intergenic
TTTCAGTTCAAAGGAAGAAG+GGG 0.579180 4_1:-35170735 Msa0545230:CDS
GATTTACATGTCCACGACTG+TGG 0.584978 4_1:+35170212 None:intergenic
AAAGAAGCACAAGAAGGTGA+TGG 0.588002 4_1:+35171835 None:intergenic
CTCAGAAAAGAAGCACAAGA+AGG 0.593610 4_1:+35171829 None:intergenic
ATCAAAAGGTGATCAAGCCA+AGG 0.614436 4_1:-35170702 Msa0545230:CDS
GGGGTAAGAGCTACTGTGGG+TGG 0.621082 4_1:+35170374 None:intergenic
GATCAATGACAGAGTAATGG+AGG 0.626103 4_1:+35170643 None:intergenic
CAATGACAGAGTAATGGAGG+TGG 0.627479 4_1:+35170646 None:intergenic
GGAATCACTACTGATGCTAC+CGG 0.632753 4_1:-35170461 Msa0545230:CDS
TGCAGCATATGCCAAAGCAA+AGG 0.641846 4_1:+35170424 None:intergenic
GATTGGGGTAAGAGCTACTG+TGG 0.646696 4_1:+35170370 None:intergenic
AATCCAACCAGCTACGATTG+GGG 0.648062 4_1:+35170355 None:intergenic
ATTATACTACAATCAAACAC+TGG 0.651914 4_1:+35170283 None:intergenic
GAGTTGCTGGCAAAATATGG+AGG 0.682334 4_1:-35170680 Msa0545230:CDS
ATTGGGGTAAGAGCTACTGT+GGG 0.725389 4_1:+35170371 None:intergenic
AGCTGTTAAAGAGAAAACTG+AGG 0.740712 4_1:-35171728 Msa0545230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATTAGAGAAAGAAAT+GGG + chr4_1:35170526-35170545 None:intergenic 15.0%
!! AAATAAATTAGAGAAAGAAA+TGG + chr4_1:35170527-35170546 None:intergenic 15.0%
!!! TTTCTTTCTCTAATTTATTT+TGG - chr4_1:35170527-35170546 Msa0545230:intron 15.0%
!! TTAGTATAAAGTATATATGA+AGG - chr4_1:35170642-35170661 Msa0545230:CDS 15.0%
!!! AAATATAAGTTGAGTTTTTA+AGG - chr4_1:35171172-35171191 Msa0545230:intron 15.0%
!! AATAAATTAGAGAAAGAAAT+GGG + chr4_1:35170526-35170545 None:intergenic 15.0%
!! AAATAAATTAGAGAAAGAAA+TGG + chr4_1:35170527-35170546 None:intergenic 15.0%
!!! TTTCTTTCTCTAATTTATTT+TGG - chr4_1:35170527-35170546 Msa0545230:intron 15.0%
!! TTAGTATAAAGTATATATGA+AGG - chr4_1:35170642-35170661 Msa0545230:CDS 15.0%
!!! AAATATAAGTTGAGTTTTTA+AGG - chr4_1:35171172-35171191 Msa0545230:intron 15.0%
!! TTGATTATCAAGATTGTATA+GGG + chr4_1:35170221-35170240 None:intergenic 20.0%
!! TTTGATTATCAAGATTGTAT+AGG + chr4_1:35170222-35170241 None:intergenic 20.0%
!! TTGGTTTAATTATGATTATG+TGG - chr4_1:35170546-35170565 Msa0545230:intron 20.0%
!!! TTTTATTGTTGAAATTTGCA+GGG - chr4_1:35170681-35170700 Msa0545230:CDS 20.0%
!!! TTACCATTGAGTTTTATTTT+AGG - chr4_1:35170855-35170874 Msa0545230:intron 20.0%
!! AAACCTAAAATAAAACTCAA+TGG + chr4_1:35170861-35170880 None:intergenic 20.0%
!! TCTAAACTTCTACTTTAAAT+TGG + chr4_1:35171044-35171063 None:intergenic 20.0%
!! TGTGTGTAAAATGAAAATTA+TGG - chr4_1:35171378-35171397 Msa0545230:intron 20.0%
!! ATTATACTTAAATCCACATT+GGG + chr4_1:35171613-35171632 None:intergenic 20.0%
!!! ATTGCTATAATTGATTTGAA+TGG - chr4_1:35172020-35172039 Msa0545230:five_prime_UTR 20.0%
!! TTGATTATCAAGATTGTATA+GGG + chr4_1:35170221-35170240 None:intergenic 20.0%
!! TTTGATTATCAAGATTGTAT+AGG + chr4_1:35170222-35170241 None:intergenic 20.0%
!! TTGGTTTAATTATGATTATG+TGG - chr4_1:35170546-35170565 Msa0545230:intron 20.0%
!!! TTTTATTGTTGAAATTTGCA+GGG - chr4_1:35170681-35170700 Msa0545230:CDS 20.0%
!!! TTACCATTGAGTTTTATTTT+AGG - chr4_1:35170855-35170874 Msa0545230:intron 20.0%
!! AAACCTAAAATAAAACTCAA+TGG + chr4_1:35170861-35170880 None:intergenic 20.0%
!! TCTAAACTTCTACTTTAAAT+TGG + chr4_1:35171044-35171063 None:intergenic 20.0%
!! TGTGTGTAAAATGAAAATTA+TGG - chr4_1:35171378-35171397 Msa0545230:intron 20.0%
!! ATTATACTTAAATCCACATT+GGG + chr4_1:35171613-35171632 None:intergenic 20.0%
!!! ATTGCTATAATTGATTTGAA+TGG - chr4_1:35172020-35172039 Msa0545230:five_prime_UTR 20.0%
!!! TCTTTCTTTCTTTTTTCTGT+TGG - chr4_1:35170174-35170193 Msa0545230:three_prime_UTR 25.0%
! AAACATGAAATTTCTCACTT+TGG + chr4_1:35170598-35170617 None:intergenic 25.0%
!! AGTGAGAAATTTCATGTTTT+TGG - chr4_1:35170599-35170618 Msa0545230:CDS 25.0%
!! GTGAGAAATTTCATGTTTTT+GGG - chr4_1:35170600-35170619 Msa0545230:CDS 25.0%
! TATGAAGGATATTCAAAGAT+AGG - chr4_1:35170657-35170676 Msa0545230:CDS 25.0%
!! CTTTTATTGTTGAAATTTGC+AGG - chr4_1:35170680-35170699 Msa0545230:CDS 25.0%
!! ATTTGTTTCCTTGATTTTTG+CGG - chr4_1:35171202-35171221 Msa0545230:intron 25.0%
! ACTAATGATTGAAAATCGTT+TGG + chr4_1:35171304-35171323 None:intergenic 25.0%
! TGTTATGTATTAATCAATGC+TGG - chr4_1:35171540-35171559 Msa0545230:intron 25.0%
! CATTATACTTAAATCCACAT+TGG + chr4_1:35171614-35171633 None:intergenic 25.0%
! TAAAGATAAGTAGCTAATAG+TGG - chr4_1:35171830-35171849 Msa0545230:CDS 25.0%
! ATTATACTACAATCAAACAC+TGG + chr4_1:35171868-35171887 None:intergenic 25.0%
! AGCTATTGTTGACAATTATA+TGG + chr4_1:35171961-35171980 None:intergenic 25.0%
!!! CTATAATTGATTTGAATGGT+TGG - chr4_1:35172024-35172043 Msa0545230:five_prime_UTR 25.0%
!!! TCTTTCTTTCTTTTTTCTGT+TGG - chr4_1:35170174-35170193 Msa0545230:three_prime_UTR 25.0%
! AAACATGAAATTTCTCACTT+TGG + chr4_1:35170598-35170617 None:intergenic 25.0%
!! AGTGAGAAATTTCATGTTTT+TGG - chr4_1:35170599-35170618 Msa0545230:CDS 25.0%
!! GTGAGAAATTTCATGTTTTT+GGG - chr4_1:35170600-35170619 Msa0545230:CDS 25.0%
! TATGAAGGATATTCAAAGAT+AGG - chr4_1:35170657-35170676 Msa0545230:CDS 25.0%
!! CTTTTATTGTTGAAATTTGC+AGG - chr4_1:35170680-35170699 Msa0545230:CDS 25.0%
!! ATTTGTTTCCTTGATTTTTG+CGG - chr4_1:35171202-35171221 Msa0545230:intron 25.0%
! ACTAATGATTGAAAATCGTT+TGG + chr4_1:35171304-35171323 None:intergenic 25.0%
! TGTTATGTATTAATCAATGC+TGG - chr4_1:35171540-35171559 Msa0545230:intron 25.0%
! CATTATACTTAAATCCACAT+TGG + chr4_1:35171614-35171633 None:intergenic 25.0%
! TAAAGATAAGTAGCTAATAG+TGG - chr4_1:35171830-35171849 Msa0545230:CDS 25.0%
! ATTATACTACAATCAAACAC+TGG + chr4_1:35171868-35171887 None:intergenic 25.0%
! AGCTATTGTTGACAATTATA+TGG + chr4_1:35171961-35171980 None:intergenic 25.0%
AACAAAAACGTTGTCATTGT+TGG + chr4_1:35170289-35170308 None:intergenic 30.0%
ATTAGATTTACGTGACTGAA+TGG + chr4_1:35170380-35170399 None:intergenic 30.0%
TTTGCTTGTCATATAGAACT+TGG - chr4_1:35170766-35170785 Msa0545230:intron 30.0%
TTGCTTGTCATATAGAACTT+GGG - chr4_1:35170767-35170786 Msa0545230:intron 30.0%
CAGTATGGTAAAACAAGAAA+TGG + chr4_1:35170889-35170908 None:intergenic 30.0%
TTTGAACGACATTCAAACAT+TGG + chr4_1:35171002-35171021 None:intergenic 30.0%
TATCTCAGCTGTAAAATTGT+TGG + chr4_1:35171078-35171097 None:intergenic 30.0%
!! TGACATGGGTTTTATACTTA+TGG - chr4_1:35171254-35171273 Msa0545230:intron 30.0%
!! GACATGGGTTTTATACTTAT+GGG - chr4_1:35171255-35171274 Msa0545230:intron 30.0%
! TTTGCAGATTTTCAGTTCAA+AGG - chr4_1:35171404-35171423 Msa0545230:intron 30.0%
! ATTTTCAGTTCAAAGGAAGA+AGG - chr4_1:35171411-35171430 Msa0545230:intron 30.0%
! TTTTCAGTTCAAAGGAAGAA+GGG - chr4_1:35171412-35171431 Msa0545230:intron 30.0%
GGAGATGAAAATATGATTAC+AGG + chr4_1:35171895-35171914 None:intergenic 30.0%
AACAAAAACGTTGTCATTGT+TGG + chr4_1:35170289-35170308 None:intergenic 30.0%
ATTAGATTTACGTGACTGAA+TGG + chr4_1:35170380-35170399 None:intergenic 30.0%
TTTGCTTGTCATATAGAACT+TGG - chr4_1:35170766-35170785 Msa0545230:intron 30.0%
TTGCTTGTCATATAGAACTT+GGG - chr4_1:35170767-35170786 Msa0545230:intron 30.0%
CAGTATGGTAAAACAAGAAA+TGG + chr4_1:35170889-35170908 None:intergenic 30.0%
TTTGAACGACATTCAAACAT+TGG + chr4_1:35171002-35171021 None:intergenic 30.0%
TATCTCAGCTGTAAAATTGT+TGG + chr4_1:35171078-35171097 None:intergenic 30.0%
!! TGACATGGGTTTTATACTTA+TGG - chr4_1:35171254-35171273 Msa0545230:intron 30.0%
!! GACATGGGTTTTATACTTAT+GGG - chr4_1:35171255-35171274 Msa0545230:intron 30.0%
! TTTGCAGATTTTCAGTTCAA+AGG - chr4_1:35171404-35171423 Msa0545230:intron 30.0%
! ATTTTCAGTTCAAAGGAAGA+AGG - chr4_1:35171411-35171430 Msa0545230:intron 30.0%
! TTTTCAGTTCAAAGGAAGAA+GGG - chr4_1:35171412-35171431 Msa0545230:intron 30.0%
GGAGATGAAAATATGATTAC+AGG + chr4_1:35171895-35171914 None:intergenic 30.0%
AGCTGTTAAAGAGAAAACTG+AGG - chr4_1:35170420-35170439 Msa0545230:CDS 35.0%
TACTTCTTGGTTACTTCTTC+AGG + chr4_1:35170475-35170494 None:intergenic 35.0%
GAAGAAGTAACCAAGAAGTA+TGG - chr4_1:35170475-35170494 Msa0545230:intron 35.0%
! TGGGTTGCTTCTTATTTATG+TGG - chr4_1:35170619-35170638 Msa0545230:CDS 35.0%
TTGTTGAAATTTGCAGGGAA+AGG - chr4_1:35170686-35170705 Msa0545230:CDS 35.0%
! TGTATCGTTCCCTGATTTTA+GGG - chr4_1:35170907-35170926 Msa0545230:intron 35.0%
! CTTTTGTTCCCCTAAAATCA+GGG + chr4_1:35170919-35170938 None:intergenic 35.0%
! TCTTTTGTTCCCCTAAAATC+AGG + chr4_1:35170920-35170939 None:intergenic 35.0%
CAGTACAGAACATTTCTTGA+AGG + chr4_1:35170964-35170983 None:intergenic 35.0%
GCTGTAAAATTGTTGGAACT+TGG + chr4_1:35171071-35171090 None:intergenic 35.0%
!! TTTGCGGACTATCGTTTTAA+TGG - chr4_1:35171218-35171237 Msa0545230:intron 35.0%
GAGAGGATGAATAATGACAT+GGG - chr4_1:35171240-35171259 Msa0545230:intron 35.0%
TTTCAGTTCAAAGGAAGAAG+GGG - chr4_1:35171413-35171432 Msa0545230:intron 35.0%
!!! GATCACCTTTTGATTTCTGT+TGG + chr4_1:35171440-35171459 None:intergenic 35.0%
AGAGATCAATGACAGAGTAA+TGG + chr4_1:35171511-35171530 None:intergenic 35.0%
TGTTCAAACTTTGCTTCAGA+AGG - chr4_1:35171569-35171588 Msa0545230:intron 35.0%
CATTATGTCTGTATATCTGC+AGG - chr4_1:35171662-35171681 Msa0545230:CDS 35.0%
AAACAATATTCCTCTGGCAA+TGG + chr4_1:35171916-35171935 None:intergenic 35.0%
AGCTGTTAAAGAGAAAACTG+AGG - chr4_1:35170420-35170439 Msa0545230:CDS 35.0%
TACTTCTTGGTTACTTCTTC+AGG + chr4_1:35170475-35170494 None:intergenic 35.0%
GAAGAAGTAACCAAGAAGTA+TGG - chr4_1:35170475-35170494 Msa0545230:intron 35.0%
! TGGGTTGCTTCTTATTTATG+TGG - chr4_1:35170619-35170638 Msa0545230:CDS 35.0%
TTGTTGAAATTTGCAGGGAA+AGG - chr4_1:35170686-35170705 Msa0545230:CDS 35.0%
! TGTATCGTTCCCTGATTTTA+GGG - chr4_1:35170907-35170926 Msa0545230:intron 35.0%
! CTTTTGTTCCCCTAAAATCA+GGG + chr4_1:35170919-35170938 None:intergenic 35.0%
! TCTTTTGTTCCCCTAAAATC+AGG + chr4_1:35170920-35170939 None:intergenic 35.0%
CAGTACAGAACATTTCTTGA+AGG + chr4_1:35170964-35170983 None:intergenic 35.0%
GCTGTAAAATTGTTGGAACT+TGG + chr4_1:35171071-35171090 None:intergenic 35.0%
!! TTTGCGGACTATCGTTTTAA+TGG - chr4_1:35171218-35171237 Msa0545230:intron 35.0%
GAGAGGATGAATAATGACAT+GGG - chr4_1:35171240-35171259 Msa0545230:intron 35.0%
TTTCAGTTCAAAGGAAGAAG+GGG - chr4_1:35171413-35171432 Msa0545230:intron 35.0%
!!! GATCACCTTTTGATTTCTGT+TGG + chr4_1:35171440-35171459 None:intergenic 35.0%
AGAGATCAATGACAGAGTAA+TGG + chr4_1:35171511-35171530 None:intergenic 35.0%
TGTTCAAACTTTGCTTCAGA+AGG - chr4_1:35171569-35171588 Msa0545230:intron 35.0%
CATTATGTCTGTATATCTGC+AGG - chr4_1:35171662-35171681 Msa0545230:CDS 35.0%
AAACAATATTCCTCTGGCAA+TGG + chr4_1:35171916-35171935 None:intergenic 35.0%
CGTTGTCATTGTTGGATACT+TGG + chr4_1:35170281-35170300 None:intergenic 40.0%
! AAAGAAGCACAAGAAGGTGA+TGG + chr4_1:35170316-35170335 None:intergenic 40.0%
! CTCAGAAAAGAAGCACAAGA+AGG + chr4_1:35170322-35170341 None:intergenic 40.0%
TTCAGGTGAAGATTGCTTTG+AGG + chr4_1:35170458-35170477 None:intergenic 40.0%
AGCTTCAAGACCATACTTCT+TGG + chr4_1:35170488-35170507 None:intergenic 40.0%
! AAGAAGTATGGTCTTGAAGC+TGG - chr4_1:35170487-35170506 Msa0545230:intron 40.0%
AATCAGGGAACGATACAGTA+TGG + chr4_1:35170904-35170923 None:intergenic 40.0%
! CTGTATCGTTCCCTGATTTT+AGG - chr4_1:35170906-35170925 Msa0545230:intron 40.0%
! GTATCGTTCCCTGATTTTAG+GGG - chr4_1:35170908-35170927 Msa0545230:intron 40.0%
GGGAACAAAAGATGTGTTGT+GGG - chr4_1:35170928-35170947 Msa0545230:intron 40.0%
AAATTGGCGACACAAGTCAT+CGG + chr4_1:35171028-35171047 None:intergenic 40.0%
ACGATAGTCCGCAAAAATCA+AGG + chr4_1:35171213-35171232 None:intergenic 40.0%
!! GGACTATCGTTTTAATGGAG+AGG - chr4_1:35171223-35171242 Msa0545230:intron 40.0%
GGAGAGGATGAATAATGACA+TGG - chr4_1:35171239-35171258 Msa0545230:intron 40.0%
TTTACACACAACGAAAAGCG+CGG + chr4_1:35171368-35171387 None:intergenic 40.0%
ATCAAAAGGTGATCAAGCCA+AGG - chr4_1:35171446-35171465 Msa0545230:intron 40.0%
! ATATTTTGCCAGCAACTCCT+TGG + chr4_1:35171466-35171485 None:intergenic 40.0%
AAGGAGTTGCTGGCAAAATA+TGG - chr4_1:35171465-35171484 Msa0545230:intron 40.0%
GATCAATGACAGAGTAATGG+AGG + chr4_1:35171508-35171527 None:intergenic 40.0%
TGCTCATACATAACCCAATG+TGG - chr4_1:35171597-35171616 Msa0545230:intron 40.0%
ATGTCTGTATATCTGCAGGT+AGG - chr4_1:35171666-35171685 Msa0545230:CDS 40.0%
!!! AAAGGTACCGACTTTTTCAC+CGG + chr4_1:35171709-35171728 None:intergenic 40.0%
AAAAGTCGGTACCTTTGCTT+TGG - chr4_1:35171713-35171732 Msa0545230:CDS 40.0%
ACAAAGCTGCATCTCCAATT+AGG - chr4_1:35171748-35171767 Msa0545230:CDS 40.0%
! ATTTTCATCTCCATTGCCAG+AGG - chr4_1:35171903-35171922 Msa0545230:five_prime_UTR 40.0%
CTGTGGAAACAATATTCCTC+TGG + chr4_1:35171922-35171941 None:intergenic 40.0%
GAATATTGTTTCCACAGTCG+TGG - chr4_1:35171925-35171944 Msa0545230:five_prime_UTR 40.0%
CGTTGTCATTGTTGGATACT+TGG + chr4_1:35170281-35170300 None:intergenic 40.0%
! AAAGAAGCACAAGAAGGTGA+TGG + chr4_1:35170316-35170335 None:intergenic 40.0%
! CTCAGAAAAGAAGCACAAGA+AGG + chr4_1:35170322-35170341 None:intergenic 40.0%
TTCAGGTGAAGATTGCTTTG+AGG + chr4_1:35170458-35170477 None:intergenic 40.0%
AGCTTCAAGACCATACTTCT+TGG + chr4_1:35170488-35170507 None:intergenic 40.0%
! AAGAAGTATGGTCTTGAAGC+TGG - chr4_1:35170487-35170506 Msa0545230:intron 40.0%
AATCAGGGAACGATACAGTA+TGG + chr4_1:35170904-35170923 None:intergenic 40.0%
! CTGTATCGTTCCCTGATTTT+AGG - chr4_1:35170906-35170925 Msa0545230:intron 40.0%
! GTATCGTTCCCTGATTTTAG+GGG - chr4_1:35170908-35170927 Msa0545230:intron 40.0%
GGGAACAAAAGATGTGTTGT+GGG - chr4_1:35170928-35170947 Msa0545230:intron 40.0%
AAATTGGCGACACAAGTCAT+CGG + chr4_1:35171028-35171047 None:intergenic 40.0%
ACGATAGTCCGCAAAAATCA+AGG + chr4_1:35171213-35171232 None:intergenic 40.0%
!! GGACTATCGTTTTAATGGAG+AGG - chr4_1:35171223-35171242 Msa0545230:intron 40.0%
GGAGAGGATGAATAATGACA+TGG - chr4_1:35171239-35171258 Msa0545230:intron 40.0%
TTTACACACAACGAAAAGCG+CGG + chr4_1:35171368-35171387 None:intergenic 40.0%
ATCAAAAGGTGATCAAGCCA+AGG - chr4_1:35171446-35171465 Msa0545230:intron 40.0%
! ATATTTTGCCAGCAACTCCT+TGG + chr4_1:35171466-35171485 None:intergenic 40.0%
AAGGAGTTGCTGGCAAAATA+TGG - chr4_1:35171465-35171484 Msa0545230:intron 40.0%
GATCAATGACAGAGTAATGG+AGG + chr4_1:35171508-35171527 None:intergenic 40.0%
TGCTCATACATAACCCAATG+TGG - chr4_1:35171597-35171616 Msa0545230:intron 40.0%
ATGTCTGTATATCTGCAGGT+AGG - chr4_1:35171666-35171685 Msa0545230:CDS 40.0%
!!! AAAGGTACCGACTTTTTCAC+CGG + chr4_1:35171709-35171728 None:intergenic 40.0%
AAAAGTCGGTACCTTTGCTT+TGG - chr4_1:35171713-35171732 Msa0545230:CDS 40.0%
ACAAAGCTGCATCTCCAATT+AGG - chr4_1:35171748-35171767 Msa0545230:CDS 40.0%
! ATTTTCATCTCCATTGCCAG+AGG - chr4_1:35171903-35171922 Msa0545230:five_prime_UTR 40.0%
CTGTGGAAACAATATTCCTC+TGG + chr4_1:35171922-35171941 None:intergenic 40.0%
GAATATTGTTTCCACAGTCG+TGG - chr4_1:35171925-35171944 Msa0545230:five_prime_UTR 40.0%
!! ATGGTCTTGAAGCTGGTCTT+TGG - chr4_1:35170494-35170513 Msa0545230:intron 45.0%
!! TCTTGAAGCTGGTCTTTGGA+AGG - chr4_1:35170498-35170517 Msa0545230:intron 45.0%
GGGGAACAAAAGATGTGTTG+TGG - chr4_1:35170927-35170946 Msa0545230:intron 45.0%
!! TTATGGGAGTGTCATCGTGT+CGG - chr4_1:35171271-35171290 Msa0545230:intron 45.0%
! AAAGCGCGGCTTTGACTTTA+GGG + chr4_1:35171354-35171373 None:intergenic 45.0%
! AAAAGCGCGGCTTTGACTTT+AGG + chr4_1:35171355-35171374 None:intergenic 45.0%
GGGGACCAACAGAAATCAAA+AGG - chr4_1:35171432-35171451 Msa0545230:intron 45.0%
GAGTTGCTGGCAAAATATGG+AGG - chr4_1:35171468-35171487 Msa0545230:intron 45.0%
! CAATGACAGAGTAATGGAGG+TGG + chr4_1:35171505-35171524 None:intergenic 45.0%
GGAATCACTACTGATGCTAC+CGG - chr4_1:35171687-35171706 Msa0545230:CDS 45.0%
GATGCTACCGGTGAAAAAGT+CGG - chr4_1:35171699-35171718 Msa0545230:CDS 45.0%
TGCAGCATATGCCAAAGCAA+AGG + chr4_1:35171727-35171746 None:intergenic 45.0%
ACTGTGGGTGGAAACCTAAT+TGG + chr4_1:35171765-35171784 None:intergenic 45.0%
ATTGGGGTAAGAGCTACTGT+GGG + chr4_1:35171780-35171799 None:intergenic 45.0%
AATCCAACCAGCTACGATTG+GGG + chr4_1:35171796-35171815 None:intergenic 45.0%
CAATCCAACCAGCTACGATT+GGG + chr4_1:35171797-35171816 None:intergenic 45.0%
GATTTACATGTCCACGACTG+TGG + chr4_1:35171939-35171958 None:intergenic 45.0%
!! ATGGTCTTGAAGCTGGTCTT+TGG - chr4_1:35170494-35170513 Msa0545230:intron 45.0%
!! TCTTGAAGCTGGTCTTTGGA+AGG - chr4_1:35170498-35170517 Msa0545230:intron 45.0%
GGGGAACAAAAGATGTGTTG+TGG - chr4_1:35170927-35170946 Msa0545230:intron 45.0%
!! TTATGGGAGTGTCATCGTGT+CGG - chr4_1:35171271-35171290 Msa0545230:intron 45.0%
! AAAGCGCGGCTTTGACTTTA+GGG + chr4_1:35171354-35171373 None:intergenic 45.0%
! AAAAGCGCGGCTTTGACTTT+AGG + chr4_1:35171355-35171374 None:intergenic 45.0%
GGGGACCAACAGAAATCAAA+AGG - chr4_1:35171432-35171451 Msa0545230:intron 45.0%
GAGTTGCTGGCAAAATATGG+AGG - chr4_1:35171468-35171487 Msa0545230:intron 45.0%
! CAATGACAGAGTAATGGAGG+TGG + chr4_1:35171505-35171524 None:intergenic 45.0%
GGAATCACTACTGATGCTAC+CGG - chr4_1:35171687-35171706 Msa0545230:CDS 45.0%
GATGCTACCGGTGAAAAAGT+CGG - chr4_1:35171699-35171718 Msa0545230:CDS 45.0%
TGCAGCATATGCCAAAGCAA+AGG + chr4_1:35171727-35171746 None:intergenic 45.0%
ACTGTGGGTGGAAACCTAAT+TGG + chr4_1:35171765-35171784 None:intergenic 45.0%
ATTGGGGTAAGAGCTACTGT+GGG + chr4_1:35171780-35171799 None:intergenic 45.0%
AATCCAACCAGCTACGATTG+GGG + chr4_1:35171796-35171815 None:intergenic 45.0%
CAATCCAACCAGCTACGATT+GGG + chr4_1:35171797-35171816 None:intergenic 45.0%
GATTTACATGTCCACGACTG+TGG + chr4_1:35171939-35171958 None:intergenic 45.0%
TGATCAAGCCAAGGAGTTGC+TGG - chr4_1:35171455-35171474 Msa0545230:intron 50.0%
GATTGGGGTAAGAGCTACTG+TGG + chr4_1:35171781-35171800 None:intergenic 50.0%
TTACCCCAATCGTAGCTGGT+TGG - chr4_1:35171790-35171809 Msa0545230:CDS 50.0%
CCAATCCAACCAGCTACGAT+TGG + chr4_1:35171798-35171817 None:intergenic 50.0%
CCAATCGTAGCTGGTTGGAT+TGG - chr4_1:35171795-35171814 Msa0545230:CDS 50.0%
TGATCAAGCCAAGGAGTTGC+TGG - chr4_1:35171455-35171474 Msa0545230:intron 50.0%
GATTGGGGTAAGAGCTACTG+TGG + chr4_1:35171781-35171800 None:intergenic 50.0%
TTACCCCAATCGTAGCTGGT+TGG - chr4_1:35171790-35171809 Msa0545230:CDS 50.0%
CCAATCCAACCAGCTACGAT+TGG + chr4_1:35171798-35171817 None:intergenic 50.0%
CCAATCGTAGCTGGTTGGAT+TGG - chr4_1:35171795-35171814 Msa0545230:CDS 50.0%
GCTCTTACCCCAATCGTAGC+TGG - chr4_1:35171786-35171805 Msa0545230:CDS 55.0%
GCTCTTACCCCAATCGTAGC+TGG - chr4_1:35171786-35171805 Msa0545230:CDS 55.0%
GGGGTAAGAGCTACTGTGGG+TGG + chr4_1:35171777-35171796 None:intergenic 60.0%
GGGGTAAGAGCTACTGTGGG+TGG + chr4_1:35171777-35171796 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 35170125 35172045 35170125 ID=Msa0545230;Name=Msa0545230
chr4_1 mRNA 35170125 35172045 35170125 ID=Msa0545230-mRNA-1;Parent=Msa0545230;Name=Msa0545230-mRNA-1;_AED=0.05;_eAED=0.05;_QI=167|1|1|1|1|1|3|203|188
chr4_1 exon 35170125 35170486 35170125 ID=Msa0545230-mRNA-1:exon:8933;Parent=Msa0545230-mRNA-1
chr4_1 exon 35170580 35170759 35170580 ID=Msa0545230-mRNA-1:exon:8932;Parent=Msa0545230-mRNA-1
chr4_1 exon 35171651 35172045 35171651 ID=Msa0545230-mRNA-1:exon:8931;Parent=Msa0545230-mRNA-1
chr4_1 five_prime_UTR 35171879 35172045 35171879 ID=Msa0545230-mRNA-1:five_prime_utr;Parent=Msa0545230-mRNA-1
chr4_1 CDS 35171651 35171878 35171651 ID=Msa0545230-mRNA-1:cds;Parent=Msa0545230-mRNA-1
chr4_1 CDS 35170580 35170759 35170580 ID=Msa0545230-mRNA-1:cds;Parent=Msa0545230-mRNA-1
chr4_1 CDS 35170328 35170486 35170328 ID=Msa0545230-mRNA-1:cds;Parent=Msa0545230-mRNA-1
chr4_1 three_prime_UTR 35170125 35170327 35170125 ID=Msa0545230-mRNA-1:three_prime_utr;Parent=Msa0545230-mRNA-1
Gene Sequence

>Msa0545230

ATGACAACGTTTTTGTTGCTACCATCACCTTCTTGTGCTTCTTTTCTGAGCAACAAGAAGAGTTCAAGATTTTGCAGTCTTGCTTCCATTCAGTCACGTAAATCTAATGTTAAAGTGTTCAGAGTTAGAGCTGTTAAAGAGAAAACTGAGGAAATCAAAAGCTCCTCAAAGCAATCTTCACCTGAAGAAGTAACCAAGAAGTATGGTCTTGAAGCTGGTCTTTGGAAGATTTTCAGTTCAAAGGAAGAAGGGGACCAACAGAAATCAAAAGGTGATCAAGCCAAGGAGTTGCTGGCAAAATATGGAGGAGCATACTTAGCCACCTCCATTACTCTGTCATTGATCTCTTTCGCTCTTTGTTATGTATTAATCAATGCTGGAGTAGATGTTCAAACTTTGCTTCAGAAGGTAGGAATCACTACTGATGCTACCGGTGAAAAAGTCGGTACCTTTGCTTTGGCATATGCTGCACACAAAGCTGCATCTCCAATTAGGTTTCCACCCACAGTAGCTCTTACCCCAATCGTAGCTGGTTGGATTGGAAAGAAAGCTGATAAAGATAAGTAG

Protein sequence

>Msa0545230

MTTFLLLPSPSCASFLSNKKSSRFCSLASIQSRKSNVKVFRVRAVKEKTEEIKSSSKQSSPEEVTKKYGLEAGLWKIFSSKEEGDQQKSKGDQAKELLAKYGGAYLATSITLSLISFALCYVLINAGVDVQTLLQKVGITTDATGEKVGTFALAYAAHKAASPIRFPPTVALTPIVAGWIGKKADKDK*