Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0351090 | XP_024634335.1 | 93.750 | 128 | 8 | 0 | 1 | 128 | 1 | 128 | 2.11e-69 | 222 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0351090 | A0A396IQ09 | 93.750 | 128 | 8 | 0 | 1 | 128 | 1 | 128 | 1.01e-69 | 222 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0344830 | Msa0351090 | 0.801312 | 9.555312e-49 | -8.615850e-47 |
| Msa0350990 | Msa0351090 | 0.821853 | 3.237233e-53 | -8.615850e-47 |
| Msa0351030 | Msa0351090 | 0.830970 | 2.175944e-55 | -8.615850e-47 |
| Msa0351080 | Msa0351090 | 0.848116 | 7.521473e-60 | -8.615850e-47 |
| Msa0351090 | Msa0351100 | 0.823438 | 1.384895e-53 | -8.615850e-47 |
| Msa0351090 | Msa0406880 | 0.851051 | 1.141640e-60 | -8.615850e-47 |
| Msa0351090 | Msa0406930 | 0.811462 | 6.916771e-51 | -8.615850e-47 |
| Msa0351090 | Msa0467900 | -0.802470 | 5.526774e-49 | -8.615850e-47 |
| Msa0351090 | Msa0553220 | -0.812874 | 3.404250e-51 | -8.615850e-47 |
| Msa0351090 | Msa0647450 | -0.823601 | 1.268652e-53 | -8.615850e-47 |
| Msa0351090 | Msa0661190 | -0.802659 | 5.051201e-49 | -8.615850e-47 |
| Msa0351090 | Msa1369530 | 0.804426 | 2.172388e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0351090 | MtrunA17_Chr3g0085891 | 93.750 | 128 | 8 | 0 | 1 | 128 | 1 | 128 | 1.94e-73 | 222 |
| Msa0351090 | MtrunA17_Chr1g0160891 | 72.131 | 122 | 29 | 3 | 15 | 135 | 17 | 134 | 5.71e-53 | 170 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 66 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTTAAATGTTGAAGATTC+TGG | 0.196464 | 3_1:+17010335 | Msa0351090:CDS |
| TCCTTCTCCTTCAAGAAATA+AGG | 0.229085 | 3_1:-17007320 | None:intergenic |
| CATATGTAATCACCATATTC+TGG | 0.255753 | 3_1:-17008175 | None:intergenic |
| GCTTCTATACTATTGATTCT+AGG | 0.277875 | 3_1:+17010497 | Msa0351090:three_prime_UTR |
| GAAAGAGAGTAAACATAAAA+AGG | 0.285268 | 3_1:+17009329 | Msa0351090:intron |
| GGAGGATGGGGACGGGGACG+GGG | 0.296065 | 3_1:+17005888 | Msa0351090:CDS |
| TTGAAACCGTCGCCGTTTAC+AGG | 0.301274 | 3_1:+17005722 | Msa0351090:five_prime_UTR |
| AGGAGGATGGGGACGGGGAC+GGG | 0.311745 | 3_1:+17005887 | Msa0351090:CDS |
| TGGGGACGGGGACGGGGAAG+AGG | 0.315697 | 3_1:+17005894 | Msa0351090:CDS |
| CGTCAATGGAACCCAGAATA+TGG | 0.322177 | 3_1:+17008163 | Msa0351090:CDS |
| TCATAGCGTAGCGAAGTTCT+TGG | 0.327881 | 3_1:+17005695 | None:intergenic |
| TGTGTTAAGGAGTTGGTTCC+AGG | 0.329012 | 3_1:+17007984 | Msa0351090:CDS |
| TCTTCTGTAGACTTCGTAAA+TGG | 0.339559 | 3_1:+17005857 | Msa0351090:intron |
| GTCATCAAGTACAATTCTTC+TGG | 0.356236 | 3_1:-17010594 | None:intergenic |
| GTAGGCATACGTGCTCTTCC+AGG | 0.366856 | 3_1:-17008432 | None:intergenic |
| CTATGAGACAGTTGCTTGAA+TGG | 0.378644 | 3_1:+17007264 | Msa0351090:CDS |
| ATTTAAATGTTGAAGATTCT+GGG | 0.382185 | 3_1:+17010336 | Msa0351090:CDS |
| GGCAGAGGAGGATGGGGACG+GGG | 0.384213 | 3_1:+17005882 | Msa0351090:CDS |
| TGGCAGAGGAGGATGGGGAC+GGG | 0.402946 | 3_1:+17005881 | Msa0351090:CDS |
| AATGAAGAGAGTAGCGAGTC+TGG | 0.412583 | 3_1:+17009387 | Msa0351090:CDS |
| AATTGACAAAACTATCCATT+AGG | 0.412837 | 3_1:+17008895 | Msa0351090:CDS |
| GAGGAGGATGGGGACGGGGA+CGG | 0.418582 | 3_1:+17005886 | Msa0351090:CDS |
| TATGAGACAGTTGCTTGAAT+GGG | 0.420424 | 3_1:+17007265 | Msa0351090:CDS |
| TGTGCTGGTGGCAGTGGCAG+CGG | 0.423371 | 3_1:-17008865 | None:intergenic |
| CGACGAATGTGTTAAGGAGT+TGG | 0.450423 | 3_1:+17007977 | Msa0351090:CDS |
| TACTCGTGATTCTCTGCCAC+AGG | 0.453424 | 3_1:+17007944 | Msa0351090:CDS |
| GAAGGAGAAGGAAGAATTGA+AGG | 0.454002 | 3_1:+17007331 | Msa0351090:CDS |
| TGTCAATTGTAGCGCTGTGC+TGG | 0.460569 | 3_1:-17008880 | None:intergenic |
| TGAAGAAAGTGAAGATGAAG+AGG | 0.461729 | 3_1:+17009362 | Msa0351090:CDS |
| AATGGCTGGCAGAGGAGGAT+GGG | 0.472479 | 3_1:+17005875 | Msa0351090:exon |
| AGTGGCTCCTTATTTCTTGA+AGG | 0.473271 | 3_1:+17007313 | Msa0351090:CDS |
| TAGCGCTGTGCTGGTGGCAG+TGG | 0.474989 | 3_1:-17008871 | None:intergenic |
| CTGGCAGAGGAGGATGGGGA+CGG | 0.475505 | 3_1:+17005880 | Msa0351090:CDS |
| CTTAATTGTCAGGGCGCAAA+AGG | 0.477030 | 3_1:+17007880 | Msa0351090:intron |
| ATATGTAATCACCATATTCT+GGG | 0.482590 | 3_1:-17008174 | None:intergenic |
| AAATGGCTGGCAGAGGAGGA+TGG | 0.482599 | 3_1:+17005874 | Msa0351090:exon |
| GAAGACAGTAATAAACGAAC+AGG | 0.498444 | 3_1:-17008798 | None:intergenic |
| ATTGCTAGAGAAGGAGCTCC+TGG | 0.499023 | 3_1:+17008414 | Msa0351090:CDS |
| AATGTTGAAGATTCTGGGGA+TGG | 0.506964 | 3_1:+17010341 | Msa0351090:CDS |
| CGAGACGGTAATGATCCTAA+TGG | 0.513615 | 3_1:-17008910 | None:intergenic |
| AAACTAAGCAGATGCTGAGC+CGG | 0.515920 | 3_1:+17008134 | Msa0351090:CDS |
| TGGAACTGATGATTATGATA+AGG | 0.518462 | 3_1:+17009407 | Msa0351090:CDS |
| ATGGCTGGCAGAGGAGGATG+GGG | 0.521277 | 3_1:+17005876 | Msa0351090:CDS |
| TCCTTATTTCTTGAAGGAGA+AGG | 0.526141 | 3_1:+17007319 | Msa0351090:CDS |
| CTGTAGACTTCGTAAATGGC+TGG | 0.529434 | 3_1:+17005861 | Msa0351090:intron |
| GAAGAATTGTACTTGATGAC+AGG | 0.529610 | 3_1:+17010597 | Msa0351090:three_prime_UTR |
| GTCCGAGAGATACCTGTAAA+CGG | 0.535958 | 3_1:-17005734 | None:intergenic |
| TCGTAAATGGCTGGCAGAGG+AGG | 0.549677 | 3_1:+17005870 | Msa0351090:exon |
| GTAAAGAATCAGTACAGTAC+AGG | 0.564682 | 3_1:-17010461 | None:intergenic |
| ACTTCGTAAATGGCTGGCAG+AGG | 0.569519 | 3_1:+17005867 | Msa0351090:exon |
| GCTGGTGGCAGTGGCAGCGG+TGG | 0.571233 | 3_1:-17008862 | None:intergenic |
| CTGATTCTTTACTCATCCTG+TGG | 0.571508 | 3_1:+17010472 | Msa0351090:exon |
| AAAACTTGCATTGCTAGAGA+AGG | 0.581983 | 3_1:+17008405 | Msa0351090:CDS |
| AAGGAGAAGGAAGAATTGAA+GGG | 0.585858 | 3_1:+17007332 | Msa0351090:CDS |
| AAACTACAAATGGAACTGGT+CGG | 0.597411 | 3_1:-17005926 | None:intergenic |
| ATGAGACAGTTGCTTGAATG+GGG | 0.600528 | 3_1:+17007266 | Msa0351090:CDS |
| CAATTGTAGCGCTGTGCTGG+TGG | 0.606702 | 3_1:-17008877 | None:intergenic |
| GATTTACCTGATGTTAAACA+CGG | 0.617922 | 3_1:+17007227 | Msa0351090:CDS |
| CAGTAATAAGTGATAACAGT+GGG | 0.618005 | 3_1:-17008820 | None:intergenic |
| AATAGTATAGAAGCAGCCAC+AGG | 0.625585 | 3_1:-17010488 | None:intergenic |
| TTTAAATGTTGAAGATTCTG+GGG | 0.632918 | 3_1:+17010337 | Msa0351090:CDS |
| TCAAGCAGCAAGTTTAACAA+AGG | 0.635144 | 3_1:-17010571 | None:intergenic |
| GTTTACTGTTCTAGACGAGA+CGG | 0.646043 | 3_1:-17008925 | None:intergenic |
| GAGATACCTGTAAACGGCGA+CGG | 0.655045 | 3_1:-17005728 | None:intergenic |
| TCAGTAATAAGTGATAACAG+TGG | 0.686253 | 3_1:-17008821 | None:intergenic |
| TCGTCGAAAACTAAAACCTG+TGG | 0.697134 | 3_1:-17007960 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCACATTTTAATAATATTT+TGG | + | chr3_1:17006054-17006073 | Msa0351090:intron | 10.0% |
| !!! | TTTTTTTTAGAAAAATCTTA+AGG | - | chr3_1:17006299-17006318 | None:intergenic | 10.0% |
| !!! | TTTTTTTTAGAAAAATCTTA+AGG | - | chr3_1:17006299-17006318 | None:intergenic | 10.0% |
| !!! | TCTTCATCTAAAATTATAAA+TGG | + | chr3_1:17007033-17007052 | Msa0351090:intron | 15.0% |
| !! | ACAAAAAATAGATAATTACA+AGG | - | chr3_1:17007168-17007187 | None:intergenic | 15.0% |
| !!! | TTTTGATAGATATTTTAAAG+TGG | + | chr3_1:17007295-17007314 | Msa0351090:CDS | 15.0% |
| !! | CTTTAAACAATAATATATCA+TGG | - | chr3_1:17007699-17007718 | None:intergenic | 15.0% |
| !!! | CAAATAATTTAGAACTAAAT+TGG | + | chr3_1:17008099-17008118 | Msa0351090:intron | 15.0% |
| !! | TTGTTAACGTTAAAAAATAA+GGG | - | chr3_1:17008466-17008485 | None:intergenic | 15.0% |
| !! | TTTGTTAACGTTAAAAAATA+AGG | - | chr3_1:17008467-17008486 | None:intergenic | 15.0% |
| !!! | TTTTTTAACGTTAACAAAAT+AGG | + | chr3_1:17008469-17008488 | Msa0351090:intron | 15.0% |
| !!! | TTTTTAACGTTAACAAAATA+GGG | + | chr3_1:17008470-17008489 | Msa0351090:intron | 15.0% |
| !! | AAAAGAAATCATATTAAACT+TGG | + | chr3_1:17010000-17010019 | Msa0351090:intron | 15.0% |
| !!! | TTTTTCATTTTCGTATTAAA+AGG | + | chr3_1:17010264-17010283 | Msa0351090:intron | 15.0% |
| !! | AACAATAAATTTACAGTCAA+AGG | - | chr3_1:17005762-17005781 | None:intergenic | 20.0% |
| !!! | ATAATATTTTGGAATCTATG+TGG | + | chr3_1:17006065-17006084 | Msa0351090:intron | 20.0% |
| !! | GGAATTATGGAAAAAAAATT+AGG | + | chr3_1:17006148-17006167 | Msa0351090:intron | 20.0% |
| !! | AATTATAAAACAAGATAGTG+TGG | + | chr3_1:17006235-17006254 | Msa0351090:intron | 20.0% |
| !! | AAATATAAAACAAGATAGTG+TGG | + | chr3_1:17006316-17006335 | Msa0351090:intron | 20.0% |
| !! | AAATATTCTCTTACCTTTAT+TGG | + | chr3_1:17006340-17006359 | Msa0351090:intron | 20.0% |
| !! | TTATAGACATACAATAAGAT+GGG | + | chr3_1:17006739-17006758 | Msa0351090:intron | 20.0% |
| !! | TTGATTTATTTAAGCTTATC+TGG | - | chr3_1:17006908-17006927 | None:intergenic | 20.0% |
| !! | TCACAATATATATCATGTAA+AGG | - | chr3_1:17007372-17007391 | None:intergenic | 20.0% |
| !!! | TGTCAAATTTTAATCTTTGA+GGG | - | chr3_1:17007516-17007535 | None:intergenic | 20.0% |
| !!! | TTGTCAAATTTTAATCTTTG+AGG | - | chr3_1:17007517-17007536 | None:intergenic | 20.0% |
| !!! | ATTGTTTAAAGTATCTAACA+TGG | + | chr3_1:17007708-17007727 | Msa0351090:intron | 20.0% |
| !!! | GAATATTTTCAATGCTTATA+TGG | + | chr3_1:17007813-17007832 | Msa0351090:intron | 20.0% |
| !!! | GAATAATGGAATAGAATTTA+CGG | + | chr3_1:17008010-17008029 | Msa0351090:intron | 20.0% |
| !!! | AATAATGGAATAGAATTTAC+GGG | + | chr3_1:17008011-17008030 | Msa0351090:intron | 20.0% |
| !!! | CACATTTTTAATGTTATAAC+AGG | + | chr3_1:17008770-17008789 | Msa0351090:intron | 20.0% |
| !!! | ATTTTTAATGTTATAACAGG+AGG | + | chr3_1:17008773-17008792 | Msa0351090:intron | 20.0% |
| !! | TGTTCGAATTATAGAATAAA+GGG | + | chr3_1:17009037-17009056 | Msa0351090:intron | 20.0% |
| !! | TTGTTAGTTAGATTTCTATT+TGG | + | chr3_1:17009144-17009163 | Msa0351090:intron | 20.0% |
| !! | TGTTAGTTAGATTTCTATTT+GGG | + | chr3_1:17009145-17009164 | Msa0351090:intron | 20.0% |
| !!! | TTCAATTTGAAAATTTTGTG+GGG | - | chr3_1:17009514-17009533 | None:intergenic | 20.0% |
| !!! | CTTCAATTTGAAAATTTTGT+GGG | - | chr3_1:17009515-17009534 | None:intergenic | 20.0% |
| !!! | ACTTCAATTTGAAAATTTTG+TGG | - | chr3_1:17009516-17009535 | None:intergenic | 20.0% |
| !!! | GTTTTTTTAACATTTAGAGA+CGG | - | chr3_1:17009635-17009654 | None:intergenic | 20.0% |
| !! | AAATGTTAAAAAAACCTCTA+CGG | + | chr3_1:17009640-17009659 | Msa0351090:intron | 20.0% |
| !! | ATAGTAAACTTCATCAAATA+TGG | + | chr3_1:17009695-17009714 | Msa0351090:intron | 20.0% |
| !! | TATACAGTTTGTAATGATAT+TGG | - | chr3_1:17009886-17009905 | None:intergenic | 20.0% |
| !! | ATGTAAGTTGTTTGTAAATT+TGG | + | chr3_1:17010091-17010110 | Msa0351090:intron | 20.0% |
| !!! | TTTGGATTTTAGAAATGTAT+AGG | + | chr3_1:17010109-17010128 | Msa0351090:intron | 20.0% |
| !!! | TTGGATTTTAGAAATGTATA+GGG | + | chr3_1:17010110-17010129 | Msa0351090:intron | 20.0% |
| !!! | CTGCAAAATTTTAATTTAGT+TGG | - | chr3_1:17010294-17010313 | None:intergenic | 20.0% |
| !! | ATTTAAATGTTGAAGATTCT+GGG | + | chr3_1:17010336-17010355 | Msa0351090:CDS | 20.0% |
| ! | TTCAATGTAAACACATTTCA+TGG | - | chr3_1:17006030-17006049 | None:intergenic | 25.0% |
| ! | TATATTATGAATGACTCATG+TGG | + | chr3_1:17006127-17006146 | Msa0351090:intron | 25.0% |
| ! | AAATATCCTCTTACCTTTAT+TGG | + | chr3_1:17006259-17006278 | Msa0351090:intron | 25.0% |
| ! | TTCTCATATAAGGTATAAGT+TGG | + | chr3_1:17006421-17006440 | Msa0351090:intron | 25.0% |
| !! | GTTTCTTTTATAAACTATCG+TGG | + | chr3_1:17006689-17006708 | Msa0351090:intron | 25.0% |
| ! | CTTATAGACATACAATAAGA+TGG | + | chr3_1:17006738-17006757 | Msa0351090:intron | 25.0% |
| ! | TATAGACATACAATAAGATG+GGG | + | chr3_1:17006740-17006759 | Msa0351090:intron | 25.0% |
| ! | GTAAGGAATTATAATACTGA+TGG | - | chr3_1:17006953-17006972 | None:intergenic | 25.0% |
| ! | ACATGATATATATTGTGAGA+TGG | + | chr3_1:17007374-17007393 | Msa0351090:intron | 25.0% |
| !! | GTCCTCTAAAAATTTGAATA+TGG | + | chr3_1:17007448-17007467 | Msa0351090:intron | 25.0% |
| !!! | AGCCATATTCAAATTTTTAG+AGG | - | chr3_1:17007453-17007472 | None:intergenic | 25.0% |
| !! | ATGTCTTTGGAAGATTATTA+CGG | + | chr3_1:17007633-17007652 | Msa0351090:intron | 25.0% |
| !! | TACTTTTCTTTATGCATTTG+AGG | + | chr3_1:17008066-17008085 | Msa0351090:intron | 25.0% |
| !! | AGAACTAAATTGGTAATTTC+AGG | + | chr3_1:17008109-17008128 | Msa0351090:intron | 25.0% |
| ! | ATATGTAATCACCATATTCT+GGG | - | chr3_1:17008177-17008196 | None:intergenic | 25.0% |
| ! | TTGATCATTCTATGTACATA+TGG | + | chr3_1:17008312-17008331 | Msa0351090:intron | 25.0% |
| ! | ATATTATCCATGTTATGAGT+TGG | + | chr3_1:17008342-17008361 | Msa0351090:intron | 25.0% |
| ! | TTAAGGAATCAAAAAATGAC+TGG | - | chr3_1:17008505-17008524 | None:intergenic | 25.0% |
| ! | TAATATTGTGTTACGAGATA+TGG | + | chr3_1:17008548-17008567 | Msa0351090:intron | 25.0% |
| ! | AATTGACAAAACTATCCATT+AGG | + | chr3_1:17008895-17008914 | Msa0351090:CDS | 25.0% |
| ! | GTGTTCGAATTATAGAATAA+AGG | + | chr3_1:17009036-17009055 | Msa0351090:intron | 25.0% |
| !! | TCTGTTGTATTTTCTGTTAT+TGG | + | chr3_1:17009176-17009195 | Msa0351090:intron | 25.0% |
| ! | GAAAGAGAGTAAACATAAAA+AGG | + | chr3_1:17009329-17009348 | Msa0351090:intron | 25.0% |
| ! | AAAATTAACACTCAAAGTAG+AGG | - | chr3_1:17009444-17009463 | None:intergenic | 25.0% |
| !!! | CTGTTTTGAGATAAAATTAG+TGG | + | chr3_1:17009590-17009609 | Msa0351090:intron | 25.0% |
| ! | GAATGGTAAACATAACATTT+GGG | - | chr3_1:17009774-17009793 | None:intergenic | 25.0% |
| ! | AGAATGGTAAACATAACATT+TGG | - | chr3_1:17009775-17009794 | None:intergenic | 25.0% |
| ! | AGTATGTGTAATATTTGTAG+GGG | - | chr3_1:17009963-17009982 | None:intergenic | 25.0% |
| ! | CAGTATGTGTAATATTTGTA+GGG | - | chr3_1:17009964-17009983 | None:intergenic | 25.0% |
| ! | ACAGTATGTGTAATATTTGT+AGG | - | chr3_1:17009965-17009984 | None:intergenic | 25.0% |
| ! | GATTTAAATGTTGAAGATTC+TGG | + | chr3_1:17010335-17010354 | Msa0351090:CDS | 25.0% |
| ! | TTTAAATGTTGAAGATTCTG+GGG | + | chr3_1:17010337-17010356 | Msa0351090:CDS | 25.0% |
| TTGTTTACGTCAACCAATAA+AGG | - | chr3_1:17006275-17006294 | None:intergenic | 30.0% | |
| TTGTTTACGTCAACCAATAA+AGG | - | chr3_1:17006275-17006294 | None:intergenic | 30.0% | |
| ATTCGAACTGTTCTCATATA+AGG | + | chr3_1:17006411-17006430 | Msa0351090:intron | 30.0% | |
| !! | ATAACACTTTGAGACTGTTT+GGG | - | chr3_1:17006881-17006900 | None:intergenic | 30.0% |
| GGAATTATAATACTGATGGA+TGG | - | chr3_1:17006949-17006968 | None:intergenic | 30.0% | |
| GATTTACCTGATGTTAAACA+CGG | + | chr3_1:17007227-17007246 | Msa0351090:CDS | 30.0% | |
| ! | ATTTTTCCGTGTTTAACATC+AGG | - | chr3_1:17007236-17007255 | None:intergenic | 30.0% |
| TGATGTTAAACACGGAAAAA+TGG | + | chr3_1:17007235-17007254 | Msa0351090:CDS | 30.0% | |
| TGATAAAGAAAACCGCAATT+TGG | + | chr3_1:17007426-17007445 | Msa0351090:intron | 30.0% | |
| !! | ATTTTTAGAGGACCAAATTG+CGG | - | chr3_1:17007441-17007460 | None:intergenic | 30.0% |
| TCACCAAATTAGAATTAGAG+TGG | + | chr3_1:17007550-17007569 | Msa0351090:intron | 30.0% | |
| TCACCACTCTAATTCTAATT+TGG | - | chr3_1:17007556-17007575 | None:intergenic | 30.0% | |
| ! | GTGATACTTTTGTATCTTGA+AGG | + | chr3_1:17007597-17007616 | Msa0351090:intron | 30.0% |
| ATGTGGCTTTCAAATGATTA+GGG | - | chr3_1:17007664-17007683 | None:intergenic | 30.0% | |
| AATGTGGCTTTCAAATGATT+AGG | - | chr3_1:17007665-17007684 | None:intergenic | 30.0% | |
| ATCATTTGAAAGCCACATTT+AGG | + | chr3_1:17007666-17007685 | Msa0351090:intron | 30.0% | |
| CATGGAATAAATCCTAAATG+TGG | - | chr3_1:17007681-17007700 | None:intergenic | 30.0% | |
| ATAAGGAATGAAATACTTCC+TGG | + | chr3_1:17007744-17007763 | Msa0351090:intron | 30.0% | |
| CAGATATTTAGGGACAAATA+TGG | - | chr3_1:17007841-17007860 | None:intergenic | 30.0% | |
| CATATTTGTCCCTAAATATC+TGG | + | chr3_1:17007839-17007858 | Msa0351090:intron | 30.0% | |
| TGACAATTAAGCAAGAAAAG+CGG | - | chr3_1:17007871-17007890 | None:intergenic | 30.0% | |
| ! | CTTTTCTTGCTTAATTGTCA+GGG | + | chr3_1:17007871-17007890 | Msa0351090:intron | 30.0% |
| TCTATTCCATTATTCATACC+TGG | - | chr3_1:17008005-17008024 | None:intergenic | 30.0% | |
| !!! | GGAAATGGTTATGTTTTTTG+TGG | + | chr3_1:17008032-17008051 | Msa0351090:intron | 30.0% |
| CATATGTAATCACCATATTC+TGG | - | chr3_1:17008178-17008197 | None:intergenic | 30.0% | |
| GTTATTCAAATTGAAAGAGC+AGG | + | chr3_1:17008250-17008269 | Msa0351090:intron | 30.0% | |
| ATGATCAATACTCAGTAGAA+TGG | - | chr3_1:17008300-17008319 | None:intergenic | 30.0% | |
| ATTCTATGTACATATGGTCA+TGG | + | chr3_1:17008318-17008337 | Msa0351090:intron | 30.0% | |
| TTCTATGTACATATGGTCAT+GGG | + | chr3_1:17008319-17008338 | Msa0351090:intron | 30.0% | |
| TCTACTAATAGATGTTTGTG+TGG | + | chr3_1:17008372-17008391 | Msa0351090:intron | 30.0% | |
| AAAATAAGGGAAAGAATCGT+AGG | - | chr3_1:17008453-17008472 | None:intergenic | 30.0% | |
| AACTCACACTTAATCAGTTA+AGG | - | chr3_1:17008522-17008541 | None:intergenic | 30.0% | |
| ! | GAATTCTTTTAAATCCTGTG+CGG | + | chr3_1:17008592-17008611 | Msa0351090:intron | 30.0% |
| ! | AATTCTTTTAAATCCTGTGC+GGG | + | chr3_1:17008593-17008612 | Msa0351090:intron | 30.0% |
| ! | TAAAAATGTGTTGACAGCAT+AGG | - | chr3_1:17008760-17008779 | None:intergenic | 30.0% |
| CAGTAATAAGTGATAACAGT+GGG | - | chr3_1:17008823-17008842 | None:intergenic | 30.0% | |
| TCAGTAATAAGTGATAACAG+TGG | - | chr3_1:17008824-17008843 | None:intergenic | 30.0% | |
| !! | TTTCTTTGAAATCCAACTCT+TGG | + | chr3_1:17009296-17009315 | Msa0351090:intron | 30.0% |
| !! | TTCTTTGAAATCCAACTCTT+GGG | + | chr3_1:17009297-17009316 | Msa0351090:intron | 30.0% |
| ATGTTTACTCTCTTTCTGTT+AGG | - | chr3_1:17009325-17009344 | None:intergenic | 30.0% | |
| AGAGAGTAAACATAAAAAGG+AGG | + | chr3_1:17009332-17009351 | Msa0351090:CDS | 30.0% | |
| TGGAACTGATGATTATGATA+AGG | + | chr3_1:17009407-17009426 | Msa0351090:CDS | 30.0% | |
| ! | TCTTTTCACAAGTTCAAGAA+TGG | - | chr3_1:17009468-17009487 | None:intergenic | 30.0% |
| ATAGTACCATGAAAAGTAGA+TGG | + | chr3_1:17009736-17009755 | Msa0351090:intron | 30.0% | |
| TAGTACCATGAAAAGTAGAT+GGG | + | chr3_1:17009737-17009756 | Msa0351090:intron | 30.0% | |
| ATGTTATGTTTACCATTCTG+AGG | + | chr3_1:17009776-17009795 | Msa0351090:intron | 30.0% | |
| ! | AGAGGAATTGTCTTTTATGA+TGG | - | chr3_1:17009847-17009866 | None:intergenic | 30.0% |
| AAAAGACAATTCCTCTACAT+AGG | + | chr3_1:17009851-17009870 | Msa0351090:intron | 30.0% | |
| AGTTGAGTATATACGAAACT+TGG | + | chr3_1:17009930-17009949 | Msa0351090:intron | 30.0% | |
| ! | ATGATTTCTTTTCCTTCACA+CGG | - | chr3_1:17009992-17010011 | None:intergenic | 30.0% |
| CTTACATTGAATGCTGAAAT+AGG | - | chr3_1:17010078-17010097 | None:intergenic | 30.0% | |
| !! | GCTTCTATACTATTGATTCT+AGG | + | chr3_1:17010497-17010516 | Msa0351090:three_prime_UTR | 30.0% |
| TCTTCTGTAGACTTCGTAAA+TGG | + | chr3_1:17005857-17005876 | Msa0351090:intron | 35.0% | |
| AAACTACAAATGGAACTGGT+CGG | - | chr3_1:17005929-17005948 | None:intergenic | 35.0% | |
| GGAAAAACTACAAATGGAAC+TGG | - | chr3_1:17005933-17005952 | None:intergenic | 35.0% | |
| ! | TCCATTTGTAGTTTTTCCAC+AGG | + | chr3_1:17005935-17005954 | Msa0351090:CDS | 35.0% |
| ACCTGTGGAAAAACTACAAA+TGG | - | chr3_1:17005939-17005958 | None:intergenic | 35.0% | |
| GAATGACTCATGTGGAATTA+TGG | + | chr3_1:17006135-17006154 | Msa0351090:intron | 35.0% | |
| AAGCTATCACGTAGTGATTA+TGG | + | chr3_1:17006451-17006470 | Msa0351090:intron | 35.0% | |
| GTAGTGATTATGGTGATAAG+CGG | + | chr3_1:17006461-17006480 | Msa0351090:intron | 35.0% | |
| ! | ATACAATAAGATGGGGTGTT+GGG | + | chr3_1:17006747-17006766 | Msa0351090:intron | 35.0% |
| !! | CATAACACTTTGAGACTGTT+TGG | - | chr3_1:17006882-17006901 | None:intergenic | 35.0% |
| ! | AATACTGATGGATGGATAGA+AGG | - | chr3_1:17006941-17006960 | None:intergenic | 35.0% |
| ATGAAGAATTGCATGCAATG+TGG | - | chr3_1:17007020-17007039 | None:intergenic | 35.0% | |
| CTTTATCAATCTGATGCTAC+AGG | + | chr3_1:17007199-17007218 | Msa0351090:intron | 35.0% | |
| TATGAGACAGTTGCTTGAAT+GGG | + | chr3_1:17007265-17007284 | Msa0351090:CDS | 35.0% | |
| ! | TCCTTATTTCTTGAAGGAGA+AGG | + | chr3_1:17007319-17007338 | Msa0351090:CDS | 35.0% |
| TCCTTCTCCTTCAAGAAATA+AGG | - | chr3_1:17007323-17007342 | None:intergenic | 35.0% | |
| AAGGAGAAGGAAGAATTGAA+GGG | + | chr3_1:17007332-17007351 | Msa0351090:CDS | 35.0% | |
| !! | AGTGTGATGACAAGTTTTGT+GGG | - | chr3_1:17007490-17007509 | None:intergenic | 35.0% |
| ! | TAGTGTGATGACAAGTTTTG+TGG | - | chr3_1:17007491-17007510 | None:intergenic | 35.0% |
| !! | GTATCTTGAAGGCATTGATT+TGG | + | chr3_1:17007608-17007627 | Msa0351090:intron | 35.0% |
| !! | CATTGATTTGGTGATGTCTT+TGG | + | chr3_1:17007620-17007639 | Msa0351090:intron | 35.0% |
| GACAATTAAGCAAGAAAAGC+GGG | - | chr3_1:17007870-17007889 | None:intergenic | 35.0% | |
| ! | GCTTTTCTTGCTTAATTGTC+AGG | + | chr3_1:17007870-17007889 | Msa0351090:intron | 35.0% |
| CAGAGAATCACGAGTAAAAA+TGG | - | chr3_1:17007940-17007959 | None:intergenic | 35.0% | |
| ! | AGTTTTCGACGAATGTGTTA+AGG | + | chr3_1:17007971-17007990 | Msa0351090:CDS | 35.0% |
| TTGGTTCCAGGTATGAATAA+TGG | + | chr3_1:17007996-17008015 | Msa0351090:intron | 35.0% | |
| GGAATAGAATTTACGGGAAA+TGG | + | chr3_1:17008017-17008036 | Msa0351090:intron | 35.0% | |
| ! | CTTTATGCATTTGAGGTTTC+TGG | + | chr3_1:17008073-17008092 | Msa0351090:intron | 35.0% |
| ! | TGAAAGAGCAGGATCTATTT+TGG | + | chr3_1:17008261-17008280 | Msa0351090:intron | 35.0% |
| TCAATACTCAGTAGAATGGA+AGG | - | chr3_1:17008296-17008315 | None:intergenic | 35.0% | |
| AAAACTTGCATTGCTAGAGA+AGG | + | chr3_1:17008405-17008424 | Msa0351090:CDS | 35.0% | |
| TGTGTTACGAGATATGGATA+TGG | + | chr3_1:17008554-17008573 | Msa0351090:intron | 35.0% | |
| TAATCTGACCAACACATGTA+TGG | + | chr3_1:17008637-17008656 | Msa0351090:intron | 35.0% | |
| GTAATACACCATACATGTGT+TGG | - | chr3_1:17008648-17008667 | None:intergenic | 35.0% | |
| ! | GTTGTCGAAGTGTTAAACTA+AGG | - | chr3_1:17008683-17008702 | None:intergenic | 35.0% |
| GAAGACAGTAATAAACGAAC+AGG | - | chr3_1:17008801-17008820 | None:intergenic | 35.0% | |
| ! | GTCTAGAACAGTAAACTTCA+CGG | + | chr3_1:17008932-17008951 | Msa0351090:intron | 35.0% |
| TTTGTTACCTACATTTCGTC+AGG | + | chr3_1:17008973-17008992 | Msa0351090:intron | 35.0% | |
| ATTCGAACACTTTCCTCTAA+AGG | - | chr3_1:17009026-17009045 | None:intergenic | 35.0% | |
| ! | CTGTTATTGGCTAGTTGTTA+TGG | + | chr3_1:17009189-17009208 | Msa0351090:intron | 35.0% |
| TGAAGAAAGTGAAGATGAAG+AGG | + | chr3_1:17009362-17009381 | Msa0351090:CDS | 35.0% | |
| TGAAGAAGCAAAACCACATT+TGG | + | chr3_1:17009566-17009585 | Msa0351090:intron | 35.0% | |
| ATCTCAAAACAGACCAAATG+TGG | - | chr3_1:17009582-17009601 | None:intergenic | 35.0% | |
| AGTACCATGAAAAGTAGATG+GGG | + | chr3_1:17009738-17009757 | Msa0351090:intron | 35.0% | |
| ! | TGATTTCTTTTCCTTCACAC+GGG | - | chr3_1:17009991-17010010 | None:intergenic | 35.0% |
| !!! | AGGTTTTTTACATGAGTCGA+AGG | - | chr3_1:17010058-17010077 | None:intergenic | 35.0% |
| AATGTATAGGGAGTAATGTG+CGG | + | chr3_1:17010122-17010141 | Msa0351090:intron | 35.0% | |
| GACAACTGTATGCTACATAT+TGG | - | chr3_1:17010235-17010254 | None:intergenic | 35.0% | |
| CTATCAACTTCGTAATTCTC+TGG | + | chr3_1:17010406-17010425 | Msa0351090:intron | 35.0% | |
| GTAAAGAATCAGTACAGTAC+AGG | - | chr3_1:17010464-17010483 | None:intergenic | 35.0% | |
| TCAAGCAGCAAGTTTAACAA+AGG | - | chr3_1:17010574-17010593 | None:intergenic | 35.0% | |
| GTCATCAAGTACAATTCTTC+TGG | - | chr3_1:17010597-17010616 | None:intergenic | 35.0% | |
| ! | GAAGAATTGTACTTGATGAC+AGG | + | chr3_1:17010597-17010616 | Msa0351090:three_prime_UTR | 35.0% |
| !!! | CAGAAGTGTCGGTTTTGAAA+CGG | - | chr3_1:17005976-17005995 | None:intergenic | 40.0% |
| ! | AAACCGACACTTCTGAAAGA+AGG | + | chr3_1:17005981-17006000 | Msa0351090:intron | 40.0% |
| TAAACACATTTCATGGCGAG+AGG | - | chr3_1:17006023-17006042 | None:intergenic | 40.0% | |
| CGTCAACCAATAAAGGTAAG+AGG | - | chr3_1:17006268-17006287 | None:intergenic | 40.0% | |
| GTTAGTCCAAGCAAACACTA+TGG | + | chr3_1:17006575-17006594 | Msa0351090:intron | 40.0% | |
| ACATGACCATAGTGTTTGCT+TGG | - | chr3_1:17006584-17006603 | None:intergenic | 40.0% | |
| CATACAATAAGATGGGGTGT+TGG | + | chr3_1:17006746-17006765 | Msa0351090:intron | 40.0% | |
| TATCCCTTAGCTCATACCAA+CGG | - | chr3_1:17006778-17006797 | None:intergenic | 40.0% | |
| TTGGTATGAGCTAAGGGATA+AGG | + | chr3_1:17006778-17006797 | Msa0351090:intron | 40.0% | |
| ! | GGATGGATAGAAGGTTTGTT+TGG | - | chr3_1:17006932-17006951 | None:intergenic | 40.0% |
| TGCAGAGAACAGAGAATGTA+AGG | - | chr3_1:17006970-17006989 | None:intergenic | 40.0% | |
| CTATGAGACAGTTGCTTGAA+TGG | + | chr3_1:17007264-17007283 | Msa0351090:CDS | 40.0% | |
| ATGAGACAGTTGCTTGAATG+GGG | + | chr3_1:17007266-17007285 | Msa0351090:CDS | 40.0% | |
| ! | AGTGGCTCCTTATTTCTTGA+AGG | + | chr3_1:17007313-17007332 | Msa0351090:CDS | 40.0% |
| GAAGGAGAAGGAAGAATTGA+AGG | + | chr3_1:17007331-17007350 | Msa0351090:CDS | 40.0% | |
| GAAGGAAGAATTGAAGGGTA+TGG | + | chr3_1:17007337-17007356 | Msa0351090:intron | 40.0% | |
| TAGAGTGGTGACAATGACTT+TGG | + | chr3_1:17007565-17007584 | Msa0351090:intron | 40.0% | |
| ATGGCTTGACGATACTCATA+AGG | + | chr3_1:17007727-17007746 | Msa0351090:intron | 40.0% | |
| TGTACATCTGCTCATATTCC+AGG | - | chr3_1:17007765-17007784 | None:intergenic | 40.0% | |
| AATTAAGCAAGAAAAGCGGG+AGG | - | chr3_1:17007867-17007886 | None:intergenic | 40.0% | |
| TCGTCGAAAACTAAAACCTG+TGG | - | chr3_1:17007963-17007982 | None:intergenic | 40.0% | |
| !!! | GGTTCCATTGACGTTTTTTC+CGG | - | chr3_1:17008156-17008175 | None:intergenic | 40.0% |
| CAGAGATCCAACTCATAACA+TGG | - | chr3_1:17008352-17008371 | None:intergenic | 40.0% | |
| CTAATAGATGTTTGTGTGGC+AGG | + | chr3_1:17008376-17008395 | Msa0351090:intron | 40.0% | |
| ! | AAATGTGTTGACAGCATAGG+TGG | - | chr3_1:17008757-17008776 | None:intergenic | 40.0% |
| ! | GTTTACTGTTCTAGACGAGA+CGG | - | chr3_1:17008928-17008947 | None:intergenic | 40.0% |
| GATTTCACCTGACGAAATGT+AGG | - | chr3_1:17008983-17009002 | None:intergenic | 40.0% | |
| GGTAGAAGAATCGTCAACAT+AGG | - | chr3_1:17009005-17009024 | None:intergenic | 40.0% | |
| GACGATTCTTCTACCTTTAG+AGG | + | chr3_1:17009010-17009029 | Msa0351090:intron | 40.0% | |
| ! | GGCTAGTTGTTATGGATCTT+TGG | + | chr3_1:17009197-17009216 | Msa0351090:intron | 40.0% |
| TATCTTAGTTGTACCAGCGT+AGG | + | chr3_1:17009224-17009243 | Msa0351090:intron | 40.0% | |
| ACTCAAAGTAGAGGATAGAG+TGG | - | chr3_1:17009435-17009454 | None:intergenic | 40.0% | |
| !! | AATGCCCCATCTACTTTTCA+TGG | - | chr3_1:17009745-17009764 | None:intergenic | 40.0% |
| TGAAGCTACAAACCTCAGAA+TGG | - | chr3_1:17009791-17009810 | None:intergenic | 40.0% | |
| TGTTAATACTGATGCACCAC+AGG | + | chr3_1:17010027-17010046 | Msa0351090:intron | 40.0% | |
| CACACTCACAACAGAAAAGA+GGG | - | chr3_1:17010195-17010214 | None:intergenic | 40.0% | |
| ! | AATGTTGAAGATTCTGGGGA+TGG | + | chr3_1:17010341-17010360 | Msa0351090:CDS | 40.0% |
| CTGATTCTTTACTCATCCTG+TGG | + | chr3_1:17010472-17010491 | Msa0351090:exon | 40.0% | |
| AATAGTATAGAAGCAGCCAC+AGG | - | chr3_1:17010491-17010510 | None:intergenic | 40.0% | |
| GTCCGAGAGATACCTGTAAA+CGG | - | chr3_1:17005737-17005756 | None:intergenic | 45.0% | |
| GTTATCACACACACACATGC+AGG | - | chr3_1:17005816-17005835 | None:intergenic | 45.0% | |
| CTGTAGACTTCGTAAATGGC+TGG | + | chr3_1:17005861-17005880 | Msa0351090:intron | 45.0% | |
| GAGTGTAGAGATGTTACCTG+TGG | - | chr3_1:17005954-17005973 | None:intergenic | 45.0% | |
| ! | ACGCCTTCTTTCAGAAGTGT+CGG | - | chr3_1:17005987-17006006 | None:intergenic | 45.0% |
| TGAGCTAAGGGATAAGGAGT+TGG | + | chr3_1:17006784-17006803 | Msa0351090:intron | 45.0% | |
| GTCCTGGGTTCAAACTCAAA+AGG | + | chr3_1:17006809-17006828 | Msa0351090:intron | 45.0% | |
| !!! | GTCCTTTTGAGTTTGAACCC+AGG | - | chr3_1:17006814-17006833 | None:intergenic | 45.0% |
| AGACTGTTTGGGAGAGCTTA+TGG | - | chr3_1:17006870-17006889 | None:intergenic | 45.0% | |
| CAATGGCTTAACCAGAGACT+TGG | - | chr3_1:17006994-17007013 | None:intergenic | 45.0% | |
| AGTCTCTGGTTAAGCCATTG+AGG | + | chr3_1:17006994-17007013 | Msa0351090:intron | 45.0% | |
| TTCAGAAGCTTGCAAGCAAG+AGG | + | chr3_1:17007089-17007108 | Msa0351090:intron | 45.0% | |
| TCAGAAGCTTGCAAGCAAGA+GGG | + | chr3_1:17007090-17007109 | Msa0351090:intron | 45.0% | |
| CTTAATTGTCAGGGCGCAAA+AGG | + | chr3_1:17007880-17007899 | Msa0351090:intron | 45.0% | |
| CGACGAATGTGTTAAGGAGT+TGG | + | chr3_1:17007977-17007996 | Msa0351090:CDS | 45.0% | |
| ! | TGTGTTAAGGAGTTGGTTCC+AGG | + | chr3_1:17007984-17008003 | Msa0351090:CDS | 45.0% |
| AAACTAAGCAGATGCTGAGC+CGG | + | chr3_1:17008134-17008153 | Msa0351090:CDS | 45.0% | |
| TGAGCCGGAAAAAACGTCAA+TGG | + | chr3_1:17008149-17008168 | Msa0351090:CDS | 45.0% | |
| CGTCAATGGAACCCAGAATA+TGG | + | chr3_1:17008163-17008182 | Msa0351090:CDS | 45.0% | |
| TTTAAATCCTGTGCGGGACT+TGG | + | chr3_1:17008599-17008618 | Msa0351090:intron | 45.0% | |
| TTAAATCCTGTGCGGGACTT+GGG | + | chr3_1:17008600-17008619 | Msa0351090:intron | 45.0% | |
| GAAGAGGTGGATGACAACAT+AGG | - | chr3_1:17008705-17008724 | None:intergenic | 45.0% | |
| ATCCACCTCTTCTGTCTTCA+CGG | + | chr3_1:17008713-17008732 | Msa0351090:intron | 45.0% | |
| ! | ATAGGTGGTGCCAATGCTAA+TGG | - | chr3_1:17008742-17008761 | None:intergenic | 45.0% |
| CGAGACGGTAATGATCCTAA+TGG | - | chr3_1:17008913-17008932 | None:intergenic | 45.0% | |
| TCTGTTAGGAACCCAAGAGT+TGG | - | chr3_1:17009311-17009330 | None:intergenic | 45.0% | |
| AATGAAGAGAGTAGCGAGTC+TGG | + | chr3_1:17009387-17009406 | Msa0351090:CDS | 45.0% | |
| GGTCTATAGTCAATCCGTAG+AGG | - | chr3_1:17009657-17009676 | None:intergenic | 45.0% | |
| GGACTGAGTAACCTATGTAG+AGG | - | chr3_1:17009865-17009884 | None:intergenic | 45.0% | |
| CCACACTCACAACAGAAAAG+AGG | - | chr3_1:17010196-17010215 | None:intergenic | 45.0% | |
| ! | CCTCTTTTCTGTTGTGAGTG+TGG | + | chr3_1:17010193-17010212 | Msa0351090:intron | 45.0% |
| ! | CTTTTCTGTTGTGAGTGTGG+TGG | + | chr3_1:17010196-17010215 | Msa0351090:intron | 45.0% |
| !!! | TATATTTTTTTACAATATAT+TGG | - | chr3_1:17009678-17009697 | None:intergenic | 5.0% |
| TTGAAACCGTCGCCGTTTAC+AGG | + | chr3_1:17005722-17005741 | Msa0351090:five_prime_UTR | 50.0% | |
| GAGATACCTGTAAACGGCGA+CGG | - | chr3_1:17005731-17005750 | None:intergenic | 50.0% | |
| CGCCGTTTACAGGTATCTCT+CGG | + | chr3_1:17005732-17005751 | Msa0351090:intron | 50.0% | |
| CACACACACATGCAGGTTCT+AGG | - | chr3_1:17005809-17005828 | None:intergenic | 50.0% | |
| ACTTCGTAAATGGCTGGCAG+AGG | + | chr3_1:17005867-17005886 | Msa0351090:exon | 50.0% | |
| AGCTCCGTTGGTATGAGCTA+AGG | + | chr3_1:17006771-17006790 | Msa0351090:intron | 50.0% | |
| GCTCCGTTGGTATGAGCTAA+GGG | + | chr3_1:17006772-17006791 | Msa0351090:intron | 50.0% | |
| GCTAAGGGATAAGGAGTTGG+AGG | + | chr3_1:17006787-17006806 | Msa0351090:intron | 50.0% | |
| GATAAGGAGTTGGAGGTCCT+GGG | + | chr3_1:17006794-17006813 | Msa0351090:intron | 50.0% | |
| GTTCTCTGCAACCAAGTCTC+TGG | + | chr3_1:17006980-17006999 | Msa0351090:intron | 50.0% | |
| TGCATGCAATGTGGCCTCAA+TGG | - | chr3_1:17007011-17007030 | None:intergenic | 50.0% | |
| CAGAAGCTTGCAAGCAAGAG+GGG | + | chr3_1:17007091-17007110 | Msa0351090:intron | 50.0% | |
| CGGGAGGAGCCAGATATTTA+GGG | - | chr3_1:17007851-17007870 | None:intergenic | 50.0% | |
| TACTCGTGATTCTCTGCCAC+AGG | + | chr3_1:17007944-17007963 | Msa0351090:CDS | 50.0% | |
| ATTGCTAGAGAAGGAGCTCC+TGG | + | chr3_1:17008414-17008433 | Msa0351090:CDS | 50.0% | |
| TTCACGGTGGCCATTAGCAT+TGG | + | chr3_1:17008729-17008748 | Msa0351090:intron | 50.0% | |
| TGTCAATTGTAGCGCTGTGC+TGG | - | chr3_1:17008883-17008902 | None:intergenic | 50.0% | |
| CATACTGTTTGCCCGTGTGA+AGG | + | chr3_1:17009977-17009996 | Msa0351090:intron | 50.0% | |
| TGAGTCGAAGGACAAACCTG+TGG | - | chr3_1:17010046-17010065 | None:intergenic | 50.0% | |
| TCGTAAATGGCTGGCAGAGG+AGG | + | chr3_1:17005870-17005889 | Msa0351090:exon | 55.0% | |
| AAATGGCTGGCAGAGGAGGA+TGG | + | chr3_1:17005874-17005893 | Msa0351090:exon | 55.0% | |
| AATGGCTGGCAGAGGAGGAT+GGG | + | chr3_1:17005875-17005894 | Msa0351090:exon | 55.0% | |
| GGATAAGGAGTTGGAGGTCC+TGG | + | chr3_1:17006793-17006812 | Msa0351090:intron | 55.0% | |
| GCGGGAGGAGCCAGATATTT+AGG | - | chr3_1:17007852-17007871 | None:intergenic | 55.0% | |
| GTAGGCATACGTGCTCTTCC+AGG | - | chr3_1:17008435-17008454 | None:intergenic | 55.0% | |
| CACCGTGAAGACAGAAGAGG+TGG | - | chr3_1:17008718-17008737 | None:intergenic | 55.0% | |
| CACCTCTTCTGTCTTCACGG+TGG | + | chr3_1:17008716-17008735 | Msa0351090:intron | 55.0% | |
| CAATTGTAGCGCTGTGCTGG+TGG | - | chr3_1:17008880-17008899 | None:intergenic | 55.0% | |
| AGCAACAGCTTCTCCTACGC+TGG | - | chr3_1:17009240-17009259 | None:intergenic | 55.0% | |
| GGGAGTAATGTGCGGCATCA+AGG | + | chr3_1:17010130-17010149 | Msa0351090:intron | 55.0% | |
| ATGGCTGGCAGAGGAGGATG+GGG | + | chr3_1:17005876-17005895 | Msa0351090:CDS | 60.0% | |
| TCCTGTGCGGGACTTGGGAT+TGG | + | chr3_1:17008605-17008624 | Msa0351090:intron | 60.0% | |
| TCCAATCCCAAGTCCCGCAC+AGG | - | chr3_1:17008609-17008628 | None:intergenic | 60.0% | |
| GGCCACCGTGAAGACAGAAG+AGG | - | chr3_1:17008721-17008740 | None:intergenic | 60.0% | |
| CTGGCAGAGGAGGATGGGGA+CGG | + | chr3_1:17005880-17005899 | Msa0351090:CDS | 65.0% | |
| TGGCAGAGGAGGATGGGGAC+GGG | + | chr3_1:17005881-17005900 | Msa0351090:CDS | 65.0% | |
| !! | GGGGTGTTGGGTAGCTCCGT+TGG | + | chr3_1:17006759-17006778 | Msa0351090:intron | 65.0% |
| ! | TGTGCTGGTGGCAGTGGCAG+CGG | - | chr3_1:17008868-17008887 | None:intergenic | 65.0% |
| ! | TAGCGCTGTGCTGGTGGCAG+TGG | - | chr3_1:17008874-17008893 | None:intergenic | 65.0% |
| GGCAGAGGAGGATGGGGACG+GGG | + | chr3_1:17005882-17005901 | Msa0351090:CDS | 70.0% | |
| GAGGAGGATGGGGACGGGGA+CGG | + | chr3_1:17005886-17005905 | Msa0351090:CDS | 70.0% | |
| AGGAGGATGGGGACGGGGAC+GGG | + | chr3_1:17005887-17005906 | Msa0351090:CDS | 70.0% | |
| GGAGGATGGGGACGGGGACG+GGG | + | chr3_1:17005888-17005907 | Msa0351090:CDS | 75.0% | |
| TGGGGACGGGGACGGGGAAG+AGG | + | chr3_1:17005894-17005913 | Msa0351090:CDS | 75.0% | |
| GCTGGTGGCAGTGGCAGCGG+TGG | - | chr3_1:17008865-17008884 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 17005706 | 17010636 | 17005706 | ID=Msa0351090;Name=Msa0351090 |
| chr3_1 | mRNA | 17005706 | 17010636 | 17005706 | ID=Msa0351090-mRNA-1;Parent=Msa0351090;Name=Msa0351090-mRNA-1;_AED=0.10;_eAED=0.10;_QI=47|0.77|0.8|0.9|0.88|0.8|10|161|248 |
| chr3_1 | exon | 17005706 | 17005743 | 17005706 | ID=Msa0351090-mRNA-1:exon:4088;Parent=Msa0351090-mRNA-1 |
| chr3_1 | exon | 17005867 | 17005956 | 17005867 | ID=Msa0351090-mRNA-1:exon:4089;Parent=Msa0351090-mRNA-1 |
| chr3_1 | exon | 17007221 | 17007353 | 17007221 | ID=Msa0351090-mRNA-1:exon:4090;Parent=Msa0351090-mRNA-1 |
| chr3_1 | exon | 17007892 | 17008005 | 17007892 | ID=Msa0351090-mRNA-1:exon:4091;Parent=Msa0351090-mRNA-1 |
| chr3_1 | exon | 17008131 | 17008184 | 17008131 | ID=Msa0351090-mRNA-1:exon:4092;Parent=Msa0351090-mRNA-1 |
| chr3_1 | exon | 17008398 | 17008444 | 17008398 | ID=Msa0351090-mRNA-1:exon:4093;Parent=Msa0351090-mRNA-1 |
| chr3_1 | exon | 17008792 | 17008941 | 17008792 | ID=Msa0351090-mRNA-1:exon:4094;Parent=Msa0351090-mRNA-1 |
| chr3_1 | exon | 17009330 | 17009428 | 17009330 | ID=Msa0351090-mRNA-1:exon:4095;Parent=Msa0351090-mRNA-1 |
| chr3_1 | exon | 17010314 | 17010362 | 17010314 | ID=Msa0351090-mRNA-1:exon:4096;Parent=Msa0351090-mRNA-1 |
| chr3_1 | exon | 17010456 | 17010636 | 17010456 | ID=Msa0351090-mRNA-1:exon:4097;Parent=Msa0351090-mRNA-1 |
| chr3_1 | five_prime_UTR | 17005706 | 17005743 | 17005706 | ID=Msa0351090-mRNA-1:five_prime_utr;Parent=Msa0351090-mRNA-1 |
| chr3_1 | five_prime_UTR | 17005867 | 17005875 | 17005867 | ID=Msa0351090-mRNA-1:five_prime_utr;Parent=Msa0351090-mRNA-1 |
| chr3_1 | CDS | 17005876 | 17005956 | 17005876 | ID=Msa0351090-mRNA-1:cds;Parent=Msa0351090-mRNA-1 |
| chr3_1 | CDS | 17007221 | 17007353 | 17007221 | ID=Msa0351090-mRNA-1:cds;Parent=Msa0351090-mRNA-1 |
| chr3_1 | CDS | 17007892 | 17008005 | 17007892 | ID=Msa0351090-mRNA-1:cds;Parent=Msa0351090-mRNA-1 |
| chr3_1 | CDS | 17008131 | 17008184 | 17008131 | ID=Msa0351090-mRNA-1:cds;Parent=Msa0351090-mRNA-1 |
| chr3_1 | CDS | 17008398 | 17008444 | 17008398 | ID=Msa0351090-mRNA-1:cds;Parent=Msa0351090-mRNA-1 |
| chr3_1 | CDS | 17008792 | 17008941 | 17008792 | ID=Msa0351090-mRNA-1:cds;Parent=Msa0351090-mRNA-1 |
| chr3_1 | CDS | 17009330 | 17009428 | 17009330 | ID=Msa0351090-mRNA-1:cds;Parent=Msa0351090-mRNA-1 |
| chr3_1 | CDS | 17010314 | 17010362 | 17010314 | ID=Msa0351090-mRNA-1:cds;Parent=Msa0351090-mRNA-1 |
| chr3_1 | CDS | 17010456 | 17010475 | 17010456 | ID=Msa0351090-mRNA-1:cds;Parent=Msa0351090-mRNA-1 |
| chr3_1 | three_prime_UTR | 17010476 | 17010636 | 17010476 | ID=Msa0351090-mRNA-1:three_prime_utr;Parent=Msa0351090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
