AlfalfaGEDB | Msa0351090

M. sativa cultivar zhongmu-4 / Msa0351090

KEGG: K03024
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0351090	XP_024634335.1	93.750	128	8	0	1	128	1	128	2.11e-69	222

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0351090	A0A396IQ09	93.750	128	8	0	1	128	1	128	1.01e-69	222

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0344830	Msa0351090	0.801312	9.555312e-49	-8.615850e-47
Msa0350990	Msa0351090	0.821853	3.237233e-53	-8.615850e-47
Msa0351030	Msa0351090	0.830970	2.175944e-55	-8.615850e-47
Msa0351080	Msa0351090	0.848116	7.521473e-60	-8.615850e-47
Msa0351090	Msa0351100	0.823438	1.384895e-53	-8.615850e-47
Msa0351090	Msa0406880	0.851051	1.141640e-60	-8.615850e-47
Msa0351090	Msa0406930	0.811462	6.916771e-51	-8.615850e-47
Msa0351090	Msa0467900	-0.802470	5.526774e-49	-8.615850e-47
Msa0351090	Msa0553220	-0.812874	3.404250e-51	-8.615850e-47
Msa0351090	Msa0647450	-0.823601	1.268652e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0351090	MtrunA17_Chr3g0085891	93.750	128	8	0	1	128	1	128	1.94e-73	222
Msa0351090	MtrunA17_Chr1g0160891	72.131	122	29	3	15	135	17	134	5.71e-53	170

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 66 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGCATTGCTAGAGA+AGG	0.581983	3_1:+17008405	Msa0351090:CDS
AAACTAAGCAGATGCTGAGC+CGG	0.515920	3_1:+17008134	Msa0351090:CDS
AAACTACAAATGGAACTGGT+CGG	0.597411	3_1:-17005926	None:intergenic
AAATGGCTGGCAGAGGAGGA+TGG	0.482599	3_1:+17005874	Msa0351090:exon
AAGGAGAAGGAAGAATTGAA+GGG	0.585858	3_1:+17007332	Msa0351090:CDS
AATAGTATAGAAGCAGCCAC+AGG	0.625585	3_1:-17010488	None:intergenic
AATGAAGAGAGTAGCGAGTC+TGG	0.412583	3_1:+17009387	Msa0351090:CDS
AATGGCTGGCAGAGGAGGAT+GGG	0.472479	3_1:+17005875	Msa0351090:exon
AATGTTGAAGATTCTGGGGA+TGG	0.506964	3_1:+17010341	Msa0351090:CDS
AATTGACAAAACTATCCATT+AGG	0.412837	3_1:+17008895	Msa0351090:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTTTACGTCAACCAATAA+AGG	-	chr3_1:17006275-17006294	None:intergenic	30.0%
TTGTTTACGTCAACCAATAA+AGG	-	chr3_1:17006275-17006294	None:intergenic	30.0%
ATTCGAACTGTTCTCATATA+AGG	+	chr3_1:17006411-17006430	Msa0351090:intron	30.0%
GGAATTATAATACTGATGGA+TGG	-	chr3_1:17006949-17006968	None:intergenic	30.0%
GATTTACCTGATGTTAAACA+CGG	+	chr3_1:17007227-17007246	Msa0351090:CDS	30.0%
TGATGTTAAACACGGAAAAA+TGG	+	chr3_1:17007235-17007254	Msa0351090:CDS	30.0%
TGATAAAGAAAACCGCAATT+TGG	+	chr3_1:17007426-17007445	Msa0351090:intron	30.0%
TCACCAAATTAGAATTAGAG+TGG	+	chr3_1:17007550-17007569	Msa0351090:intron	30.0%
TCACCACTCTAATTCTAATT+TGG	-	chr3_1:17007556-17007575	None:intergenic	30.0%
ATGTGGCTTTCAAATGATTA+GGG	-	chr3_1:17007664-17007683	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	17005706	17010636	17005706	ID=Msa0351090;Name=Msa0351090
chr3_1	mRNA	17005706	17010636	17005706	ID=Msa0351090-mRNA-1;Parent=Msa0351090;Name=Msa0351090-mRNA-1;_AED=0.10;_eAED=0.10;_QI=47\|0.77\|0.8\|0.9\|0.88\|0.8\|10\|161\|248
chr3_1	exon	17005706	17005743	17005706	ID=Msa0351090-mRNA-1:exon:4088;Parent=Msa0351090-mRNA-1
chr3_1	exon	17005867	17005956	17005867	ID=Msa0351090-mRNA-1:exon:4089;Parent=Msa0351090-mRNA-1
chr3_1	exon	17007221	17007353	17007221	ID=Msa0351090-mRNA-1:exon:4090;Parent=Msa0351090-mRNA-1
chr3_1	exon	17007892	17008005	17007892	ID=Msa0351090-mRNA-1:exon:4091;Parent=Msa0351090-mRNA-1
chr3_1	exon	17008131	17008184	17008131	ID=Msa0351090-mRNA-1:exon:4092;Parent=Msa0351090-mRNA-1
chr3_1	exon	17008398	17008444	17008398	ID=Msa0351090-mRNA-1:exon:4093;Parent=Msa0351090-mRNA-1
chr3_1	exon	17008792	17008941	17008792	ID=Msa0351090-mRNA-1:exon:4094;Parent=Msa0351090-mRNA-1
chr3_1	exon	17009330	17009428	17009330	ID=Msa0351090-mRNA-1:exon:4095;Parent=Msa0351090-mRNA-1
chr3_1	exon	17010314	17010362	17010314	ID=Msa0351090-mRNA-1:exon:4096;Parent=Msa0351090-mRNA-1
chr3_1	exon	17010456	17010636	17010456	ID=Msa0351090-mRNA-1:exon:4097;Parent=Msa0351090-mRNA-1
chr3_1	five_prime_UTR	17005706	17005743	17005706	ID=Msa0351090-mRNA-1:five_prime_utr;Parent=Msa0351090-mRNA-1
chr3_1	five_prime_UTR	17005867	17005875	17005867	ID=Msa0351090-mRNA-1:five_prime_utr;Parent=Msa0351090-mRNA-1
chr3_1	CDS	17005876	17005956	17005876	ID=Msa0351090-mRNA-1:cds;Parent=Msa0351090-mRNA-1
chr3_1	CDS	17007221	17007353	17007221	ID=Msa0351090-mRNA-1:cds;Parent=Msa0351090-mRNA-1
chr3_1	CDS	17007892	17008005	17007892	ID=Msa0351090-mRNA-1:cds;Parent=Msa0351090-mRNA-1
chr3_1	CDS	17008131	17008184	17008131	ID=Msa0351090-mRNA-1:cds;Parent=Msa0351090-mRNA-1
chr3_1	CDS	17008398	17008444	17008398	ID=Msa0351090-mRNA-1:cds;Parent=Msa0351090-mRNA-1
chr3_1	CDS	17008792	17008941	17008792	ID=Msa0351090-mRNA-1:cds;Parent=Msa0351090-mRNA-1
chr3_1	CDS	17009330	17009428	17009330	ID=Msa0351090-mRNA-1:cds;Parent=Msa0351090-mRNA-1
chr3_1	CDS	17010314	17010362	17010314	ID=Msa0351090-mRNA-1:cds;Parent=Msa0351090-mRNA-1
chr3_1	CDS	17010456	17010475	17010456	ID=Msa0351090-mRNA-1:cds;Parent=Msa0351090-mRNA-1
chr3_1	three_prime_UTR	17010476	17010636	17010476	ID=Msa0351090-mRNA-1:three_prime_utr;Parent=Msa0351090-mRNA-1

Gene Sequence

>Msa0351090

ATGGCTGGCAGAGGAGGATGGGGACGGGGACGGGGAAGAGGCGCATATGTCCGACCAGTTCCATTTGTAGTTTTTCCACAGGATATTGATTTACCTGATGTTAAACACGGAAAAATGGATACTTCTATGAGACAGTTGCTTGAATGGGGTTATGATTTTGATAGATATTTTAAAGTGGCTCCTTATTTCTTGAAGGAGAAGGAAGAATTGAAGGGGCGCAAAAGGATGCACGTAGAAAGATTTTCTGACAAGAAGAAGACCATTTTTACTCGTGATTCTCTGCCACAGGTTTTAGTTTTCGACGAATGTGTTAAGGAGTTGGTTCCAGGTAAAACTAAGCAGATGCTGAGCCGGAAAAAACGTCAATGGAACCCAGAATATGGTGAGAAAAAACTTGCATTGCTAGAGAAGGAGCTCCTGGAAGAGCACGAGGTGCCTGTTCGTTTATTACTGTCTTCCCACTGTTATCACTTATTACTGATGTTAATTGTAAGATCTTCCACCGCTGCCACTGCCACCAGCACAGCGCTACAATTGACAAAACTATCCATTAGGATCATTACCGTCTCGTCTAGAACAAAAGAGAGTAAACATAAAAAGGAGGAAGAAGATGAAGAAAGTGAAGATGAAGAGGAAAATGAAGAGAGTAGCGAGTCTGGAACTGATGATTATGATAAGAATCATGATGTTGACGACGATGATTTAAATGTTGAAGATTCTGGGGATGATGAACCTGTACTGTACTGA

Protein sequence

>Msa0351090

MAGRGGWGRGRGRGAYVRPVPFVVFPQDIDLPDVKHGKMDTSMRQLLEWGYDFDRYFKVAPYFLKEKEELKGRKRMHVERFSDKKKTIFTRDSLPQVLVFDECVKELVPGKTKQMLSRKKRQWNPEYGEKKLALLEKELLEEHEVPVRLLLSSHCYHLLLMLIVRSSTAATATSTALQLTKLSIRIITVSSRTKESKHKKEEEDEESEDEEENEESSESGTDDYDKNHDVDDDDLNVEDSGDDEPVLY*