Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445890 | A0A151U0W7 | 56.579 | 76 | 11 | 2 | 21 | 75 | 247 | 321 | 8.17e-15 | 77.0 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa1445890 | 0.805905 | 1.064976e-49 | -8.615850e-47 |
| Msa0027860 | Msa1445890 | 0.805639 | 1.211310e-49 | -8.615850e-47 |
| Msa0096590 | Msa1445890 | 0.829031 | 6.460097e-55 | -8.615850e-47 |
| Msa1365450 | Msa1445890 | 0.824939 | 6.151974e-54 | -8.615850e-47 |
| Msa1383560 | Msa1445890 | 0.835059 | 2.091269e-56 | -8.615850e-47 |
| Msa1431160 | Msa1445890 | 0.819963 | 8.811416e-53 | -8.615850e-47 |
| Msa1445890 | Msa1445900 | 0.829569 | 4.784538e-55 | -8.615850e-47 |
| Msa0609460 | Msa1445890 | 0.808910 | 2.455830e-50 | -8.615850e-47 |
| Msa0616300 | Msa1445890 | 0.811305 | 7.480766e-51 | -8.615850e-47 |
| Msa0622880 | Msa1445890 | 0.806808 | 6.871595e-50 | -8.615850e-47 |
| Msa0632980 | Msa1445890 | 0.828614 | 8.153580e-55 | -8.615850e-47 |
| Msa0643190 | Msa1445890 | 0.805638 | 1.212060e-49 | -8.615850e-47 |
| Msa0765530 | Msa1445890 | 0.802553 | 5.311471e-49 | -8.615850e-47 |
| Msa0777250 | Msa1445890 | 0.804816 | 1.801641e-49 | -8.615850e-47 |
| Msa0777260 | Msa1445890 | 0.941353 | 4.819084e-101 | -8.615850e-47 |
| Msa0798840 | Msa1445890 | 0.800855 | 1.184729e-48 | -8.615850e-47 |
| Msa0814230 | Msa1445890 | 0.806032 | 1.001553e-49 | -8.615850e-47 |
| Msa0150920 | Msa1445890 | 0.810469 | 1.135221e-50 | -8.615850e-47 |
| Msa0209060 | Msa1445890 | 0.871840 | 5.027840e-67 | -8.615850e-47 |
| Msa0219800 | Msa1445890 | 0.810282 | 1.245819e-50 | -8.615850e-47 |
| Msa1323080 | Msa1445890 | 0.827778 | 1.296104e-54 | -8.615850e-47 |
| Msa0366510 | Msa1445890 | 0.818891 | 1.546839e-52 | -8.615850e-47 |
| Msa0374040 | Msa1445890 | 0.816737 | 4.738725e-52 | -8.615850e-47 |
| Msa0408860 | Msa1445890 | 0.807716 | 4.412189e-50 | -8.615850e-47 |
| Msa0439000 | Msa1445890 | 0.807653 | 4.550399e-50 | -8.615850e-47 |
| Msa0439370 | Msa1445890 | 0.833714 | 4.549941e-56 | -8.615850e-47 |
| Msa0459300 | Msa1445890 | 0.809424 | 1.905768e-50 | -8.615850e-47 |
| Msa0987640 | Msa1445890 | 0.831975 | 1.230686e-55 | -8.615850e-47 |
| Msa0995110 | Msa1445890 | 0.823683 | 1.213727e-53 | -8.615850e-47 |
| Msa0995520 | Msa1445890 | 0.802214 | 6.238476e-49 | -8.615850e-47 |
| Msa0995630 | Msa1445890 | 0.810588 | 1.070027e-50 | -8.615850e-47 |
| Msa1018590 | Msa1445890 | 0.804393 | 2.207807e-49 | -8.615850e-47 |
| Msa1061670 | Msa1445890 | 0.802330 | 5.905684e-49 | -8.615850e-47 |
| Msa1068990 | Msa1445890 | 0.819297 | 1.250602e-52 | -8.615850e-47 |
| Msa1106960 | Msa1445890 | 0.800750 | 1.244822e-48 | -8.615850e-47 |
| Msa0281190 | Msa1445890 | 0.801045 | 1.083632e-48 | -8.615850e-47 |
| Msa0287630 | Msa1445890 | 0.803402 | 3.546077e-49 | -8.615850e-47 |
| Msa0288540 | Msa1445890 | 0.870193 | 1.755988e-66 | -8.615850e-47 |
| Msa0326770 | Msa1445890 | 0.897548 | 1.263237e-76 | -8.615850e-47 |
| Msa1120770 | Msa1445890 | 0.809417 | 1.912046e-50 | -8.615850e-47 |
| Msa1143250 | Msa1445890 | 0.802278 | 6.052926e-49 | -8.615850e-47 |
| Msa1148200 | Msa1445890 | 0.814876 | 1.232220e-51 | -8.615850e-47 |
| Msa1148210 | Msa1445890 | 0.803330 | 3.670089e-49 | -8.615850e-47 |
| Msa1181090 | Msa1445890 | 0.817960 | 2.514437e-52 | -8.615850e-47 |
| Msa1205910 | Msa1445890 | 0.820495 | 6.654804e-53 | -8.615850e-47 |
| Msa0483080 | Msa1445890 | 0.823739 | 1.177450e-53 | -8.615850e-47 |
| Msa0515130 | Msa1445890 | 0.807094 | 5.978147e-50 | -8.615850e-47 |
| Msa0539630 | Msa1445890 | 0.812921 | 3.323663e-51 | -8.615850e-47 |
| Msa0591490 | Msa1445890 | 0.822128 | 2.796291e-53 | -8.615850e-47 |
| Msa0861730 | Msa1445890 | 0.824980 | 6.013986e-54 | -8.615850e-47 |
| Msa0886800 | Msa1445890 | 0.830684 | 2.556146e-55 | -8.615850e-47 |
| Msa0894040 | Msa1445890 | 0.810233 | 1.276125e-50 | -8.615850e-47 |
| Msa0894070 | Msa1445890 | 0.811237 | 7.738834e-51 | -8.615850e-47 |
| Msa0896920 | Msa1445890 | 0.812057 | 5.133834e-51 | -8.615850e-47 |
| Msa0913550 | Msa1445890 | 0.856432 | 3.230360e-62 | -8.615850e-47 |
| Msa0920760 | Msa1445890 | 0.807801 | 4.232108e-50 | -8.615850e-47 |
| Msa0921180 | Msa1445890 | 0.844918 | 5.614868e-59 | -8.615850e-47 |
| Msa0927930 | Msa1445890 | 0.805144 | 1.538180e-49 | -8.615850e-47 |
| Msa0946010 | Msa1445890 | 0.882742 | 8.071231e-71 | -8.615850e-47 |
| Msa0946310 | Msa1445890 | 0.820249 | 7.579199e-53 | -8.615850e-47 |
| Msa0951150 | Msa1445890 | 0.850809 | 1.335281e-60 | -8.615850e-47 |
| Msa0959240 | Msa1445890 | 0.812810 | 3.515647e-51 | -8.615850e-47 |
| Msa0959700 | Msa1445890 | 0.828545 | 8.470199e-55 | -8.615850e-47 |
| Msa0964510 | Msa1445890 | 0.818601 | 1.799774e-52 | -8.615850e-47 |
| Msa0967190 | Msa1445890 | 0.814879 | 1.230243e-51 | -8.615850e-47 |
| Msa0967200 | Msa1445890 | 0.824822 | 6.555643e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445890 | MtrunA17_Chr5g0432341 | 49.367 | 79 | 18 | 2 | 19 | 76 | 246 | 323 | 2.76e-15 | 68.2 |
| Msa1445890 | MtrunA17_Chr5g0432331 | 49.367 | 79 | 18 | 2 | 19 | 76 | 277 | 354 | 8.16e-15 | 67.0 |
| Msa1445890 | MtrunA17_Chr5g0432401 | 46.053 | 76 | 19 | 2 | 19 | 73 | 211 | 285 | 8.91e-15 | 66.6 |
| Msa1445890 | MtrunA17_Chr5g0432361 | 41.975 | 81 | 25 | 2 | 14 | 73 | 29 | 108 | 4.33e-14 | 61.6 |
| Msa1445890 | MtrunA17_Chr5g0432351 | 48.052 | 77 | 18 | 2 | 19 | 74 | 246 | 321 | 1.67e-13 | 63.2 |
| Msa1445890 | MtrunA17_Chr3g0107881 | 47.945 | 73 | 16 | 2 | 23 | 74 | 253 | 324 | 7.14e-11 | 55.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 8 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGGATTTATTGTACAAAA+AGG | 0.207420 | tig0031232:-35415 | Msa1445890:CDS |
| TATTAGAACCATATATTATA+AGG | 0.252483 | tig0031232:-35433 | Msa1445890:CDS |
| GCCTATTACTGGCAGAATAA+TGG | 0.270633 | tig0031232:-35255 | Msa1445890:CDS |
| CAATAAATCCTTATAATATA+TGG | 0.294284 | tig0031232:+35425 | Msa1445890:intergenic |
| CCCATTATTCTGCCAGTAAT+AGG | 0.308962 | tig0031232:+35254 | Msa1445890:intergenic |
| CCTATTACTGGCAGAATAAT+GGG | 0.377412 | tig0031232:-35254 | Msa1445890:CDS |
| AGTAACATGAAGCCTATTAC+TGG | 0.410932 | tig0031232:-35266 | Msa1445890:CDS |
| GCAGAATAATGGGTGAGATT+AGG | 0.482122 | tig0031232:-35244 | Msa1445890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTTTATTTTAATATTT+CGG | - | tig0031232:36598-36617 | Msa1445890:intron | 0.0% |
| !!! | AAATTTATAATTTATTTTTT+CGG | - | tig0031232:36671-36690 | Msa1445890:intron | 0.0% |
| !!! | AAAAATTTTTAAAATTTTTT+CGG | - | tig0031232:36708-36727 | Msa1445890:intron | 0.0% |
| !! | AATAATACTTTCATATATAT+TGG | + | tig0031232:35611-35630 | Msa1445890:intergenic | 10.0% |
| !!! | AATTTTTTTTTGTTTGAAAA+TGG | - | tig0031232:36038-36057 | Msa1445890:intron | 10.0% |
| !!! | AAATTTATTTTCAGATTTTT+CGG | + | tig0031232:37207-37226 | Msa1445890:intergenic | 10.0% |
| !! | AAATATATTTCATAAATTTC+CGG | - | tig0031232:36535-36554 | Msa1445890:intron | 10.0% |
| !! | TCGAAAATTTAAAAATATTT+CGG | + | tig0031232:36854-36873 | Msa1445890:intergenic | 10.0% |
| !!! | AAATTTATTTTCAGATTTTT+TGG | - | tig0031232:37207-37226 | Msa1445890:intron | 10.0% |
| !!! | TATAATTTTCAGATTTTTTT+CGG | - | tig0031232:37279-37298 | Msa1445890:intron | 10.0% |
| !! | CTGAAAATTATAAAAAATTT+CGG | + | tig0031232:36336-36355 | Msa1445890:intergenic | 10.0% |
| !!! | TATAATTTTCAGAATTTTTT+CGG | - | tig0031232:37351-37370 | Msa1445890:intron | 10.0% |
| !!! | AATTTTTTTTTGTTTGAAAA+TGG | + | tig0031232:36038-36057 | Msa1445890:intergenic | 10.0% |
| !! | AATTTATCATAAAATATAAG+TGG | + | tig0031232:37678-37697 | Msa1445890:intergenic | 10.0% |
| !! | TTTATGTTAGTATAAATTAT+AGG | - | tig0031232:38421-38440 | Msa1445890:intron | 10.0% |
| !! | AGTTATGTAATATTATATGT+TGG | - | tig0031232:35439-35458 | Msa1445890:CDS | 15.0% |
| !!! | CTTTGTATTATTTAAGTTAT+AGG | - | tig0031232:35467-35486 | Msa1445890:intron | 15.0% |
| !!! | AATTTGGAACTTTAAATAAA+AGG | - | tig0031232:35678-35697 | Msa1445890:intron | 15.0% |
| !!! | TCAAACTTTTTTTTTTTACA+GGG | + | tig0031232:36004-36023 | Msa1445890:intergenic | 15.0% |
| !!! | TTCAAACTTTTTTTTTTTAC+AGG | + | tig0031232:36005-36024 | Msa1445890:intergenic | 15.0% |
| !! | CAAACAAAAAAAAATTTACA+GGG | + | tig0031232:37574-37593 | Msa1445890:intergenic | 15.0% |
| !! | TCAAACAAAAAAAAATTTAC+AGG | + | tig0031232:37573-37592 | Msa1445890:intergenic | 15.0% |
| !!! | AAATTTATTTTGGGATTTTT+TGG | + | tig0031232:36288-36307 | Msa1445890:intergenic | 15.0% |
| !!! | TTTAAAATAATCATGAGATA+AGG | - | tig0031232:36887-36906 | Msa1445890:intron | 15.0% |
| !!! | ATGACAATTTTTACTTTAAA+AGG | + | tig0031232:37040-37059 | Msa1445890:intergenic | 15.0% |
| !! | TCAAACAAAAAAAAATTTAC+AGG | - | tig0031232:37573-37592 | Msa1445890:intron | 15.0% |
| !! | CAAACAAAAAAAAATTTACA+GGG | - | tig0031232:37574-37593 | Msa1445890:intron | 15.0% |
| !!! | ATTCAAACTTTTTTATTTAC+AGG | - | tig0031232:37602-37621 | Msa1445890:intron | 15.0% |
| !!! | TTCAAACTTTTTTATTTACA+GGG | - | tig0031232:37603-37622 | Msa1445890:intron | 15.0% |
| !! | TAAATAATAATAGATTCACA+TGG | + | tig0031232:38067-38086 | Msa1445890:intergenic | 15.0% |
| !! | ATGATTAAAAAATTAATCAG+TGG | + | tig0031232:38274-38293 | Msa1445890:intergenic | 15.0% |
| !! | TATTAGAACCATATATTATA+AGG | - | tig0031232:38450-38469 | Msa1445890:intron | 15.0% |
| !! | CAATAAATCCTTATAATATA+TGG | + | tig0031232:38461-38480 | Msa1445890:intergenic | 15.0% |
| !! | CAAATTAATTCTAATTACTC+TGG | + | tig0031232:35871-35890 | Msa1445890:intergenic | 20.0% |
| !! | GAAAGAATAATACATACATT+TGG | - | tig0031232:35901-35920 | Msa1445890:intron | 20.0% |
| !! | AGTTAATTAAACAAGTAGAA+GGG | + | tig0031232:36987-37006 | Msa1445890:intergenic | 20.0% |
| !! | TGTTTAATTAACTGAATATG+CGG | - | tig0031232:36994-37013 | Msa1445890:intron | 20.0% |
| !!! | TTGAAAATTGAGAGTATTTT+TGG | + | tig0031232:37827-37846 | Msa1445890:intergenic | 20.0% |
| !!! | TATGTACATTTTGTATTGTA+GGG | + | tig0031232:38397-38416 | Msa1445890:intergenic | 20.0% |
| !! | TAAGGATTTATTGTACAAAA+AGG | - | tig0031232:38468-38487 | Msa1445890:intron | 20.0% |
| !! | AAGGATTTATTGTACAAAAA+GGG | - | tig0031232:38469-38488 | Msa1445890:intron | 20.0% |
| !!! | CTTTTTTCTTTTCGAATTCA+CGG | + | tig0031232:35356-35375 | None:intergenic | 25.0% |
| !!! | AAAAGCTCTAAAACGTAATA+AGG | - | tig0031232:35371-35390 | Msa1445890:CDS | 25.0% |
| !!! | AAAGCTCTAAAACGTAATAA+GGG | - | tig0031232:35372-35391 | Msa1445890:CDS | 25.0% |
| !! | GATGTTGAGTTTTTATGTTA+AGG | - | tig0031232:35544-35563 | Msa1445890:intron | 25.0% |
| ! | TATGTTAAGGTTCAATTGTT+TGG | - | tig0031232:35557-35576 | Msa1445890:intron | 25.0% |
| ! | ATGTTAAGGTTCAATTGTTT+GGG | - | tig0031232:35558-35577 | Msa1445890:intron | 25.0% |
| !!! | GAGAATTTGACTTGTAAAAA+GGG | + | tig0031232:35739-35758 | Msa1445890:intergenic | 25.0% |
| !!! | TGAGAATTTGACTTGTAAAA+AGG | + | tig0031232:35740-35759 | Msa1445890:intergenic | 25.0% |
| !!! | CTCTGGTCTTTATTATTTTT+TGG | + | tig0031232:35854-35873 | Msa1445890:intergenic | 25.0% |
| ! | TGTAAGAGATCAACTTATAT+TGG | - | tig0031232:35929-35948 | Msa1445890:intron | 25.0% |
| ! | CAACATTAAGAAAGACTAAT+GGG | - | tig0031232:36912-36931 | Msa1445890:intron | 25.0% |
| ! | AACATTAAGAAAGACTAATG+GGG | - | tig0031232:36913-36932 | Msa1445890:intron | 25.0% |
| ! | TTAATTAAACAAGTAGAAGG+GGG | + | tig0031232:36985-37004 | Msa1445890:intergenic | 25.0% |
| ! | GTTAATTAAACAAGTAGAAG+GGG | + | tig0031232:36986-37005 | Msa1445890:intergenic | 25.0% |
| ! | CAGTTAATTAAACAAGTAGA+AGG | + | tig0031232:36988-37007 | Msa1445890:intergenic | 25.0% |
| ! | GTTTAATTAACTGAATATGC+GGG | - | tig0031232:36995-37014 | Msa1445890:intron | 25.0% |
| ! | TTTAATTAACTGAATATGCG+GGG | - | tig0031232:36996-37015 | Msa1445890:intron | 25.0% |
| !!! | AATTGAGAGTATTTTTGGAA+AGG | + | tig0031232:37822-37841 | Msa1445890:intergenic | 25.0% |
| !! | ATTAGGGTTTTTGTTACAAT+AGG | - | tig0031232:38224-38243 | Msa1445890:intron | 25.0% |
| !! | ACTAACGATAGACTTTATTT+CGG | - | tig0031232:38332-38351 | Msa1445890:intron | 25.0% |
| !! | ATGTACATTTTGTATTGTAG+GGG | + | tig0031232:38396-38415 | Msa1445890:intergenic | 25.0% |
| !! | CTATGTACATTTTGTATTGT+AGG | + | tig0031232:38398-38417 | Msa1445890:intergenic | 25.0% |
| !!! | TGGTTTTGAAAGTGATAAAT+TGG | - | tig0031232:38528-38547 | Msa1445890:intron | 25.0% |
| !! | TATGCTTTTACTAATGACTT+TGG | - | tig0031232:38576-38595 | Msa1445890:intron | 25.0% |
| !! | AAGCTCTAAAACGTAATAAG+GGG | - | tig0031232:35373-35392 | Msa1445890:CDS | 30.0% |
| GCAACATTAAGAAAGACTAA+TGG | - | tig0031232:36911-36930 | Msa1445890:intron | 30.0% | |
| CATATATAGATCAACTTTGC+TGG | - | tig0031232:37088-37107 | Msa1445890:intron | 30.0% | |
| TTCCTCTGTGCTTAATTATA+AGG | + | tig0031232:37711-37730 | Msa1445890:intergenic | 30.0% | |
| TGTTACAATAGGAGCTATAA+AGG | - | tig0031232:38235-38254 | Msa1445890:intron | 30.0% | |
| !! | CAAGAGCTTTTTAAAGATGA+TGG | - | tig0031232:38508-38527 | Msa1445890:intron | 30.0% |
| !! | TTCAAATTTTGACACTCGAC+AGG | + | tig0031232:35508-35527 | Msa1445890:intergenic | 35.0% |
| GCGATGATCAATGCTTAATT+TGG | - | tig0031232:35662-35681 | Msa1445890:intron | 35.0% | |
| GAATTTCGTCCCTGTAATAT+AGG | - | tig0031232:35961-35980 | Msa1445890:intron | 35.0% | |
| CAAAACACGCCTATATTACA+GGG | + | tig0031232:37634-37653 | Msa1445890:intergenic | 35.0% | |
| TCAAAACACGCCTATATTAC+AGG | + | tig0031232:37633-37652 | Msa1445890:intergenic | 35.0% | |
| !! | TTTTGTTTGAAAATGGTCCC+TGG | - | tig0031232:36045-36064 | Msa1445890:intron | 35.0% |
| TTTGTTTGAAAATGGTCCCT+GGG | - | tig0031232:36046-36065 | Msa1445890:intron | 35.0% | |
| TTTGTTTGAAAATGGTCCCT+GGG | + | tig0031232:36046-36065 | Msa1445890:intergenic | 35.0% | |
| !! | TTTTGTTTGAAAATGGTCCC+TGG | + | tig0031232:36045-36064 | Msa1445890:intergenic | 35.0% |
| TCAAAACACGCCTATATTAC+AGG | - | tig0031232:37633-37652 | Msa1445890:intron | 35.0% | |
| CAAAACACGCCTATATTACA+GGG | - | tig0031232:37634-37653 | Msa1445890:intron | 35.0% | |
| GAATTTCGTCCCTGTAATAT+AGG | + | tig0031232:35961-35980 | Msa1445890:intergenic | 35.0% | |
| GTCCTTATAATTAAGCACAG+AGG | - | tig0031232:37706-37725 | Msa1445890:intron | 35.0% | |
| ! | ACTACCTCTTTCAGCATTTT+TGG | - | tig0031232:37785-37804 | Msa1445890:intron | 35.0% |
| ! | CTACCTCTTTCAGCATTTTT+GGG | - | tig0031232:37786-37805 | Msa1445890:intron | 35.0% |
| ACATAAACCAATTGCTACTG+CGG | + | tig0031232:38140-38159 | Msa1445890:intergenic | 35.0% | |
| TGGTTTATGTCAAATCCCTT+TGG | - | tig0031232:38150-38169 | Msa1445890:intron | 35.0% | |
| GGTTTATGTCAAATCCCTTT+GGG | - | tig0031232:38151-38170 | Msa1445890:intron | 35.0% | |
| GTTTATGTCAAATCCCTTTG+GGG | - | tig0031232:38152-38171 | Msa1445890:intron | 35.0% | |
| TTTATGTCAAATCCCTTTGG+GGG | - | tig0031232:38153-38172 | Msa1445890:intron | 35.0% | |
| TAATCTTGAGAGTCTCCAAA+TGG | + | tig0031232:38208-38227 | Msa1445890:intergenic | 35.0% | |
| ATTTGGAGACTCTCAAGATT+AGG | - | tig0031232:38207-38226 | Msa1445890:intron | 35.0% | |
| TTTGGAGACTCTCAAGATTA+GGG | - | tig0031232:38208-38227 | Msa1445890:intron | 35.0% | |
| AGTAACATGAAGCCTATTAC+TGG | - | tig0031232:38617-38636 | Msa1445890:intron | 35.0% | |
| CCTATTACTGGCAGAATAAT+GGG | - | tig0031232:38629-38648 | Msa1445890:intron | 35.0% | |
| ! | GCATTGATCATCGCATCAAA+AGG | + | tig0031232:35656-35675 | Msa1445890:intergenic | 40.0% |
| AAGAAATCCGCAGTAGCAAT+TGG | - | tig0031232:38130-38149 | Msa1445890:intron | 40.0% | |
| GCCTATTACTGGCAGAATAA+TGG | - | tig0031232:38628-38647 | Msa1445890:intron | 40.0% | |
| CCCATTATTCTGCCAGTAAT+AGG | + | tig0031232:38632-38651 | Msa1445890:intergenic | 40.0% | |
| !! | GCAGAATAATGGGTGAGATT+AGG | - | tig0031232:38639-38658 | Msa1445890:intron | 40.0% |
| AGATGTAGCAGAAGTCTGAC+AGG | - | tig0031232:36942-36961 | Msa1445890:intron | 45.0% | |
| CTGCCCAAAAATGCTGAAAG+AGG | + | tig0031232:37792-37811 | Msa1445890:intergenic | 45.0% | |
| TCTCCAAATGGAGACTTCCA+TGG | + | tig0031232:38196-38215 | Msa1445890:intergenic | 45.0% | |
| !!! | TTTTTTATTTTTTAATTATG+TGG | + | tig0031232:36159-36178 | Msa1445890:intergenic | 5.0% |
| !!! | TATTATTTTTAGATTTTTTA+TGG | + | tig0031232:36257-36276 | Msa1445890:intergenic | 5.0% |
| !!! | ATGATTTTTAAATTTATTTT+GGG | + | tig0031232:37198-37217 | Msa1445890:intergenic | 5.0% |
| !!! | TATGATTTTTAAATTTATTT+TGG | + | tig0031232:37197-37216 | Msa1445890:intergenic | 5.0% |
| !!! | TATTAAAATAAATTTTTTTC+CGG | + | tig0031232:36557-36576 | Msa1445890:intergenic | 5.0% |
| !!! | AAAATTTTTAAAATTTTTTC+GGG | - | tig0031232:36709-36728 | Msa1445890:intron | 5.0% |
| !!! | TTACATTTTTTTAATTTTTT+CGG | - | tig0031232:36759-36778 | Msa1445890:intron | 5.0% |
| !!! | TTTTAAAATTTAATATTATG+TGG | - | tig0031232:37449-37468 | Msa1445890:intron | 5.0% |
| !!! | TGTATATATATATTTTTTTA+AGG | - | tig0031232:37990-38009 | Msa1445890:intron | 5.0% |
| TGCCAACTCAGCTGAACAGT+GGG | + | tig0031232:36072-36091 | Msa1445890:intergenic | 50.0% | |
| TTGCCAACTCAGCTGAACAG+TGG | + | tig0031232:36073-36092 | Msa1445890:intergenic | 50.0% | |
| ! | ACTGTTCAGCTGAGTTGGCA+AGG | - | tig0031232:36072-36091 | Msa1445890:intron | 50.0% |
| ! | CTGTTCAGCTGAGTTGGCAA+GGG | - | tig0031232:36073-36092 | Msa1445890:intron | 50.0% |
| ! | ACTGTGCAACTTTTGCCACG+TGG | - | tig0031232:36118-36137 | Msa1445890:intron | 50.0% |
| ! | ACTGTGCAACTTTTGCCACG+TGG | + | tig0031232:36118-36137 | Msa1445890:intergenic | 50.0% |
| TGTAGTAGCAGCTTCAGCCA+TGG | - | tig0031232:38176-38195 | Msa1445890:intron | 50.0% | |
| CAGCCATGGAAGTCTCCATT+TGG | - | tig0031232:38190-38209 | Msa1445890:intron | 50.0% | |
| ! | CAGCTGAGTTGGCAAGGGTT+TGG | - | tig0031232:36078-36097 | Msa1445890:intron | 55.0% |
| !! | ACTGTAGCGCTGATGTGGCA+TGG | + | tig0031232:37536-37555 | Msa1445890:intergenic | 55.0% |
| ATGCCACATCAGCGCTACAG+TGG | - | tig0031232:37535-37554 | Msa1445890:intron | 55.0% | |
| TGCCACATCAGCGCTACAGT+GGG | - | tig0031232:37536-37555 | Msa1445890:intron | 55.0% | |
| GCTGCTACTACACCCCCAAA+GGG | + | tig0031232:38168-38187 | Msa1445890:intergenic | 55.0% | |
| AGCTGCTACTACACCCCCAA+AGG | + | tig0031232:38169-38188 | Msa1445890:intergenic | 55.0% | |
| TCAGCTGAACAGTGGGCCCA+GGG | + | tig0031232:36065-36084 | Msa1445890:intergenic | 60.0% | |
| GGCCCACTGTTCAGCTGAGT+TGG | - | tig0031232:36067-36086 | Msa1445890:intron | 60.0% | |
| TTGGCAAGGGTTTGGCCACG+TGG | - | tig0031232:36086-36105 | Msa1445890:intron | 60.0% | |
| CACAGTCAGCAACTGCCACG+TGG | + | tig0031232:37504-37523 | Msa1445890:intergenic | 60.0% | |
| !! | TTTGCCACGTGGCACTGACG+TGG | + | tig0031232:37479-37498 | Msa1445890:intergenic | 60.0% |
| CACAGTCAGCAACTGCCACG+TGG | - | tig0031232:37504-37523 | Msa1445890:intron | 60.0% | |
| CTCAGCTGAACAGTGGGCCC+AGG | + | tig0031232:36066-36085 | Msa1445890:intergenic | 65.0% | |
| !! | TTTGCCACGTGGCGCTGACG+TGG | - | tig0031232:36129-36148 | Msa1445890:intron | 65.0% |
| GTGGCATGGCATTCGCCACG+TGG | + | tig0031232:37522-37541 | Msa1445890:intergenic | 65.0% | |
| !! | GGCCCACTGTAGCGCTGATG+TGG | + | tig0031232:37541-37560 | Msa1445890:intergenic | 65.0% |
| ATCAGCGCTACAGTGGGCCC+AGG | - | tig0031232:37542-37561 | Msa1445890:intron | 65.0% | |
| TCAGCGCTACAGTGGGCCCA+GGG | - | tig0031232:37543-37562 | Msa1445890:intron | 65.0% | |
| CACGCCACGTCAGTGCCACG+TGG | - | tig0031232:37472-37491 | Msa1445890:intron | 70.0% | |
| CACGCCACGTCAGCGCCACG+TGG | + | tig0031232:36136-36155 | Msa1445890:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0031232 | gene | 35214 | 38691 | 35214 | ID=Msa1445890;Name=Msa1445890 |
| tig0031232 | mRNA | 35214 | 38691 | 35214 | ID=Msa1445890-mRNA-1;Parent=Msa1445890;Name=Msa1445890-mRNA-1;_AED=0.54;_eAED=0.56;_QI=0|0|0|0.75|0|0|4|0|76 |
| tig0031232 | exon | 38686 | 38691 | 38686 | ID=Msa1445890-mRNA-1:exon:15189;Parent=Msa1445890-mRNA-1 |
| tig0031232 | exon | 38377 | 38416 | 38377 | ID=Msa1445890-mRNA-1:exon:15188;Parent=Msa1445890-mRNA-1 |
| tig0031232 | exon | 35356 | 35462 | 35356 | ID=Msa1445890-mRNA-1:exon:15187;Parent=Msa1445890-mRNA-1 |
| tig0031232 | exon | 35214 | 35291 | 35214 | ID=Msa1445890-mRNA-1:exon:15186;Parent=Msa1445890-mRNA-1 |
| tig0031232 | CDS | 38686 | 38691 | 38686 | ID=Msa1445890-mRNA-1:cds;Parent=Msa1445890-mRNA-1 |
| tig0031232 | CDS | 38377 | 38416 | 38377 | ID=Msa1445890-mRNA-1:cds;Parent=Msa1445890-mRNA-1 |
| tig0031232 | CDS | 35356 | 35462 | 35356 | ID=Msa1445890-mRNA-1:cds;Parent=Msa1445890-mRNA-1 |
| tig0031232 | CDS | 35214 | 35291 | 35214 | ID=Msa1445890-mRNA-1:cds;Parent=Msa1445890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
