Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411740 | XP_003600455.1 | 73.592 | 284 | 61 | 3 | 1 | 273 | 1 | 281 | 8.72e-144 | 415 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411740 | sp|Q8L3W1|VRN1_ARATH | 25.223 | 337 | 172 | 10 | 12 | 274 | 6 | 336 | 3.21e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411740 | G8A2Z2 | 73.592 | 284 | 61 | 3 | 1 | 273 | 1 | 281 | 4.17e-144 | 415 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0411740 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0142220 | Msa0411740 | 0.800827 | 1.200482e-48 | -8.615850e-47 |
| Msa0364340 | Msa0411740 | 0.884098 | 2.562402e-71 | -8.615850e-47 |
| Msa0411740 | Msa0729800 | 0.834621 | 2.696026e-56 | -8.615850e-47 |
| Msa0411740 | Msa1111150 | 0.809107 | 2.228609e-50 | -8.615850e-47 |
| Msa0411740 | Msa1121480 | 0.818757 | 1.659373e-52 | -8.615850e-47 |
| Msa0411740 | Msa1121490 | 0.805979 | 1.027431e-49 | -8.615850e-47 |
| Msa0411740 | Msa1397580 | 0.807077 | 6.027380e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411740 | MtrunA17_Chr3g0103181 | 73.944 | 284 | 58 | 5 | 1 | 273 | 1 | 279 | 1.88e-144 | 406 |
| Msa0411740 | MtrunA17_Chr3g0103191 | 73.705 | 251 | 55 | 2 | 1 | 240 | 1 | 251 | 1.17e-128 | 365 |
| Msa0411740 | MtrunA17_Chr3g0103171 | 69.084 | 262 | 67 | 4 | 25 | 273 | 5 | 265 | 4.78e-118 | 339 |
| Msa0411740 | MtrunA17_Chr3g0103201 | 70.000 | 220 | 55 | 2 | 65 | 273 | 1 | 220 | 1.39e-104 | 303 |
| Msa0411740 | MtrunA17_Chr3g0103151 | 71.698 | 159 | 33 | 3 | 1 | 148 | 1 | 158 | 1.07e-73 | 223 |
| Msa0411740 | MtrunA17_Chr3g0103161 | 65.854 | 123 | 42 | 0 | 152 | 274 | 2 | 124 | 2.46e-51 | 164 |
| Msa0411740 | MtrunA17_Chr8g0390841 | 34.062 | 320 | 148 | 13 | 4 | 277 | 31 | 333 | 5.87e-41 | 148 |
| Msa0411740 | MtrunA17_Chr8g0390841 | 50.000 | 62 | 30 | 1 | 213 | 274 | 458 | 518 | 4.08e-12 | 66.2 |
| Msa0411740 | MtrunA17_Chr7g0233561 | 33.003 | 303 | 159 | 11 | 10 | 274 | 16 | 312 | 4.40e-39 | 139 |
| Msa0411740 | MtrunA17_Chr1g0163071 | 32.765 | 293 | 146 | 10 | 26 | 274 | 2 | 287 | 7.95e-38 | 135 |
| Msa0411740 | MtrunA17_Chr3g0131891 | 31.834 | 289 | 171 | 8 | 10 | 274 | 17 | 303 | 7.35e-36 | 130 |
| Msa0411740 | MtrunA17_Chr1g0208771 | 30.872 | 298 | 145 | 9 | 21 | 274 | 10 | 290 | 9.95e-33 | 124 |
| Msa0411740 | MtrunA17_Chr1g0208771 | 35.338 | 133 | 72 | 4 | 152 | 274 | 330 | 458 | 2.06e-13 | 69.7 |
| Msa0411740 | MtrunA17_Chr7g0233521 | 31.985 | 272 | 152 | 9 | 26 | 274 | 2 | 263 | 9.40e-31 | 116 |
| Msa0411740 | MtrunA17_Chr1g0163251 | 28.826 | 281 | 177 | 7 | 12 | 276 | 9 | 282 | 2.76e-28 | 111 |
| Msa0411740 | MtrunA17_Chr4g0067431 | 28.713 | 303 | 173 | 11 | 10 | 273 | 13 | 311 | 2.61e-27 | 107 |
| Msa0411740 | MtrunA17_Chr7g0233541 | 30.175 | 285 | 157 | 9 | 26 | 274 | 2 | 280 | 1.29e-26 | 105 |
| Msa0411740 | MtrunA17_Chr7g0233571 | 32.381 | 210 | 116 | 5 | 10 | 193 | 8 | 217 | 1.11e-24 | 98.6 |
| Msa0411740 | MtrunA17_Chr7g0233531 | 29.699 | 266 | 166 | 7 | 26 | 274 | 2 | 263 | 1.37e-23 | 97.1 |
| Msa0411740 | MtrunA17_Chr1g0163131 | 26.384 | 307 | 173 | 11 | 10 | 276 | 16 | 309 | 2.79e-23 | 96.7 |
| Msa0411740 | MtrunA17_Chr1g0163261 | 25.000 | 280 | 186 | 5 | 11 | 272 | 8 | 281 | 3.66e-22 | 93.6 |
| Msa0411740 | MtrunA17_Chr1g0163181 | 26.102 | 295 | 168 | 10 | 14 | 272 | 11 | 291 | 1.57e-21 | 93.6 |
| Msa0411740 | MtrunA17_Chr1g0163221 | 28.082 | 292 | 172 | 9 | 10 | 273 | 9 | 290 | 2.85e-20 | 89.0 |
| Msa0411740 | MtrunA17_Chr1g0163201 | 27.076 | 277 | 162 | 10 | 25 | 272 | 18 | 283 | 3.21e-20 | 89.4 |
| Msa0411740 | MtrunA17_Chr5g0419201 | 31.928 | 166 | 85 | 4 | 12 | 156 | 16 | 174 | 3.40e-20 | 85.9 |
| Msa0411740 | MtrunA17_Chr1g0163231 | 26.736 | 288 | 175 | 12 | 12 | 277 | 9 | 282 | 6.47e-17 | 79.0 |
| Msa0411740 | MtrunA17_Chr3g0077451 | 26.515 | 264 | 142 | 6 | 24 | 274 | 10 | 234 | 2.61e-16 | 76.3 |
| Msa0411740 | MtrunA17_Chr1g0163061 | 41.176 | 102 | 47 | 3 | 10 | 98 | 13 | 114 | 3.98e-15 | 73.6 |
| Msa0411740 | MtrunA17_Chr5g0429931 | 27.925 | 265 | 148 | 8 | 25 | 276 | 10 | 244 | 5.36e-15 | 72.8 |
| Msa0411740 | MtrunA17_Chr6g0467351 | 30.120 | 166 | 90 | 5 | 10 | 160 | 13 | 167 | 1.40e-14 | 71.2 |
| Msa0411740 | MtrunA17_Chr1g0163191 | 34.615 | 104 | 58 | 2 | 12 | 107 | 9 | 110 | 1.82e-14 | 69.7 |
| Msa0411740 | MtrunA17_Chr1g0162441 | 35.294 | 102 | 54 | 2 | 12 | 101 | 7 | 108 | 1.97e-14 | 72.8 |
| Msa0411740 | MtrunA17_Chr1g0171611 | 24.382 | 283 | 176 | 9 | 12 | 277 | 9 | 270 | 1.69e-13 | 69.3 |
| Msa0411740 | MtrunA17_Chr4g0033961 | 28.788 | 132 | 74 | 3 | 12 | 123 | 6 | 137 | 4.25e-13 | 68.9 |
| Msa0411740 | MtrunA17_Chr4g0033961 | 30.723 | 166 | 94 | 8 | 123 | 274 | 230 | 388 | 1.34e-11 | 64.3 |
| Msa0411740 | MtrunA17_Chr3g0077411 | 25.338 | 296 | 168 | 9 | 1 | 273 | 251 | 516 | 1.64e-12 | 67.4 |
| Msa0411740 | MtrunA17_Chr1g0163241 | 32.174 | 115 | 64 | 3 | 15 | 117 | 14 | 126 | 1.53e-11 | 61.6 |
| Msa0411740 | MtrunA17_Chr1g0163121 | 33.628 | 113 | 61 | 3 | 24 | 123 | 9 | 120 | 2.10e-11 | 60.8 |
| Msa0411740 | MtrunA17_Chr1g0162411 | 33.962 | 106 | 56 | 3 | 8 | 101 | 3 | 106 | 5.20e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411740 | AT3G18990.1 | 25.223 | 337 | 172 | 10 | 12 | 274 | 6 | 336 | 3.26e-25 | 102 |
| Msa0411740 | AT3G18990.2 | 25.223 | 337 | 172 | 10 | 12 | 274 | 6 | 336 | 7.22e-25 | 102 |
| Msa0411740 | AT1G49475.1 | 35.971 | 139 | 65 | 4 | 11 | 126 | 33 | 170 | 2.42e-13 | 67.4 |
| Msa0411740 | AT1G49480.3 | 28.161 | 174 | 107 | 6 | 112 | 274 | 55 | 221 | 6.05e-13 | 67.0 |
| Msa0411740 | AT1G49480.1 | 28.161 | 174 | 107 | 6 | 112 | 274 | 55 | 221 | 6.05e-13 | 67.0 |
| Msa0411740 | AT1G49480.2 | 28.161 | 174 | 107 | 6 | 112 | 274 | 55 | 221 | 6.05e-13 | 67.0 |
Find 58 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAATGTACCAAGTTTAAA+AGG | 0.192490 | 3_2:-54219416 | Msa0411740:CDS |
| TCTCATAAAGCCTAATATTT+TGG | 0.203174 | 3_2:-54219548 | Msa0411740:CDS |
| TGATGAATCAGTTGAGATTT+TGG | 0.207341 | 3_2:-54219890 | Msa0411740:CDS |
| ACACAAAATGGAAAATTTAT+TGG | 0.211795 | 3_2:-54220119 | Msa0411740:CDS |
| AAAGAACTTCATCAATAAAT+TGG | 0.285020 | 3_2:-54219636 | Msa0411740:CDS |
| CAATCCTTTGAAGATTAGTT+TGG | 0.289306 | 3_2:+54220497 | None:intergenic |
| AATCTATTTCTACCGCATTC+TGG | 0.299695 | 3_2:+54219965 | None:intergenic |
| CGATTTGCTACCAAAATATT+AGG | 0.305096 | 3_2:+54219538 | None:intergenic |
| AAGAATGGGGTGCTTCAAAT+TGG | 0.305697 | 3_2:-54219374 | Msa0411740:CDS |
| AGACTCCTGATGACACAAAA+TGG | 0.311302 | 3_2:-54220131 | Msa0411740:CDS |
| TTTACTGAAAATTACTCTCT+TGG | 0.363298 | 3_2:-54220051 | Msa0411740:CDS |
| CTTTGCAAACAACGACCAAC+CGG | 0.388975 | 3_2:+54219286 | None:intergenic |
| TGGTGAGATTTGGTTTGAAA+AGG | 0.404488 | 3_2:-54220085 | Msa0411740:CDS |
| CGAAATTTCTTATGTGGTTG+AGG | 0.409501 | 3_2:+54219817 | None:intergenic |
| AAAGGAAAGTGGACTGCAAC+CGG | 0.409884 | 3_2:-54219267 | Msa0411740:CDS |
| TGTCTCCTTGTAAACTTAGT+TGG | 0.417262 | 3_2:+54220186 | None:intergenic |
| AGAATGTACCAAGTTTAAAA+GGG | 0.440224 | 3_2:-54219415 | Msa0411740:CDS |
| AAACCTCGAAATTTCTTATG+TGG | 0.440475 | 3_2:+54219811 | None:intergenic |
| CAACCACATAAGAAATTTCG+AGG | 0.448613 | 3_2:-54219814 | Msa0411740:intron |
| TTGAGAACAAGGAGAAGAAT+GGG | 0.457350 | 3_2:-54219388 | Msa0411740:CDS |
| TCCTTTGAAGATTAGTTTGG+AGG | 0.466963 | 3_2:+54220500 | None:intergenic |
| AGATTTGGTTTGAAAAGGGT+TGG | 0.470784 | 3_2:-54220080 | Msa0411740:CDS |
| AAGTTTGATGTACACATACT+TGG | 0.471543 | 3_2:-54219988 | Msa0411740:CDS |
| TCCTGAGCTCTAGCATCCCT+TGG | 0.476761 | 3_2:+54219613 | None:intergenic |
| AAGGGTCGCTGGCTTTCGTC+CGG | 0.479732 | 3_2:-54219305 | Msa0411740:CDS |
| AGAATGGGGTGCTTCAAATT+GGG | 0.486287 | 3_2:-54219373 | Msa0411740:CDS |
| CTTGAGAACAAGGAGAAGAA+TGG | 0.493806 | 3_2:-54219389 | Msa0411740:CDS |
| CTGTTGGTACAACCACACTA+AGG | 0.500363 | 3_2:-54219324 | Msa0411740:CDS |
| GGAGGATGATCTTGAAGAAA+CGG | 0.501786 | 3_2:+54220518 | None:intergenic |
| GTCGCTGGCTTTCGTCCGGT+TGG | 0.501854 | 3_2:-54219301 | Msa0411740:CDS |
| TTCAAATTGGGAAAAGATCA+TGG | 0.505109 | 3_2:-54219361 | Msa0411740:CDS |
| GCCAAGGGATGCTAGAGCTC+AGG | 0.513948 | 3_2:-54219614 | Msa0411740:CDS |
| GGTGAGATTTGGTTTGAAAA+GGG | 0.518476 | 3_2:-54220084 | Msa0411740:CDS |
| CGGTTGGTCGTTGTTTGCAA+AGG | 0.518916 | 3_2:-54219285 | Msa0411740:CDS |
| TCGTTGTTTGCAAAGGAAAG+TGG | 0.519381 | 3_2:-54219278 | Msa0411740:CDS |
| TCAGGAGTCTTTATCACCAC+AGG | 0.520726 | 3_2:+54220144 | None:intergenic |
| CTTCATCAATAAATTGGCCA+AGG | 0.530612 | 3_2:-54219630 | Msa0411740:CDS |
| AAAAGGGGTTCTTGAGAACA+AGG | 0.531116 | 3_2:-54219399 | Msa0411740:CDS |
| TCCTCCAAACTAATCTTCAA+AGG | 0.552905 | 3_2:-54220501 | Msa0411740:CDS |
| AAGTATGTGTACATCAAACT+TGG | 0.555627 | 3_2:+54219990 | None:intergenic |
| AAATACCAACTAAGTTTACA+AGG | 0.559571 | 3_2:-54220191 | Msa0411740:CDS |
| ACAACCACACTAAGGGTCGC+TGG | 0.574129 | 3_2:-54219316 | Msa0411740:CDS |
| GGAATGTGAAATTGCTCTGT+TGG | 0.576259 | 3_2:-54219340 | Msa0411740:CDS |
| TCAAAGACACAAACATCTCC+CGG | 0.581806 | 3_2:+54219248 | None:intergenic |
| TGAACGGCTTAATCGGAAGA+AGG | 0.583690 | 3_2:-54219866 | Msa0411740:CDS |
| TGATCTTGAAGAAACGGACG+AGG | 0.601322 | 3_2:+54220524 | None:intergenic |
| GAATGTACCAAGTTTAAAAG+GGG | 0.611239 | 3_2:-54219414 | Msa0411740:CDS |
| AAGGAAAGTGGACTGCAACC+GGG | 0.612688 | 3_2:-54219266 | Msa0411740:CDS |
| TGTTGGTACAACCACACTAA+GGG | 0.614040 | 3_2:-54219323 | Msa0411740:CDS |
| TTCATCAATAAATTGGCCAA+GGG | 0.622394 | 3_2:-54219629 | Msa0411740:CDS |
| TTTACAAGGAGACATGGAGT+TGG | 0.631934 | 3_2:-54220177 | Msa0411740:CDS |
| ACTAAGTTTACAAGGAGACA+TGG | 0.632567 | 3_2:-54220183 | Msa0411740:CDS |
| TGTCTTTGAACTGATAAACA+AGG | 0.641859 | 3_2:-54219234 | Msa0411740:CDS |
| TGTGGTTGAGGAGAAACAGA+AGG | 0.646974 | 3_2:+54219829 | None:intergenic |
| AAAGCCAGCGACCCTTAGTG+TGG | 0.674774 | 3_2:+54219312 | None:intergenic |
| ACACATACTTGGCCAGAATG+CGG | 0.704931 | 3_2:-54219977 | Msa0411740:CDS |
| TGAGAACAAGGAGAAGAATG+GGG | 0.713093 | 3_2:-54219387 | Msa0411740:CDS |
| AGTTGGTCTATCAAATCCTG+TGG | 0.752396 | 3_2:-54220160 | Msa0411740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAAAGTAAATAGTACTAAT+AGG | + | chr3_2:54219274-54219293 | None:intergenic | 20.0% |
| !! | ACACAAAATGGAAAATTTAT+TGG | - | chr3_2:54219618-54219637 | Msa0411740:CDS | 20.0% |
| !! | ATTTATTGGAAAAAAATCGA+TGG | - | chr3_2:54219632-54219651 | Msa0411740:CDS | 20.0% |
| !! | AAAGAACTTCATCAATAAAT+TGG | - | chr3_2:54220101-54220120 | Msa0411740:CDS | 20.0% |
| !! | TTTATGAGAATTGTGAAAAA+AGG | + | chr3_2:54220178-54220197 | None:intergenic | 20.0% |
| !!! | TTAAAGTTCATGTTTTCAAA+AGG | - | chr3_2:54220538-54220557 | Msa0411740:CDS | 20.0% |
| !!! | TAAAGTTCATGTTTTCAAAA+GGG | - | chr3_2:54220539-54220558 | Msa0411740:CDS | 20.0% |
| !! | CTAAAGTAAATAGTACTAAT+AGG | + | chr3_2:54219274-54219293 | None:intergenic | 20.0% |
| !! | ACACAAAATGGAAAATTTAT+TGG | - | chr3_2:54219618-54219637 | Msa0411740:CDS | 20.0% |
| !! | ATTTATTGGAAAAAAATCGA+TGG | - | chr3_2:54219632-54219651 | Msa0411740:CDS | 20.0% |
| !! | AAAGAACTTCATCAATAAAT+TGG | - | chr3_2:54220101-54220120 | Msa0411740:CDS | 20.0% |
| !! | TTTATGAGAATTGTGAAAAA+AGG | + | chr3_2:54220178-54220197 | None:intergenic | 20.0% |
| !!! | TTAAAGTTCATGTTTTCAAA+AGG | - | chr3_2:54220538-54220557 | Msa0411740:CDS | 20.0% |
| !!! | TAAAGTTCATGTTTTCAAAA+GGG | - | chr3_2:54220539-54220558 | Msa0411740:CDS | 20.0% |
| ! | TAGCACTAGAAAGTTTATTA+TGG | - | chr3_2:54219408-54219427 | Msa0411740:CDS | 25.0% |
| ! | AAATACCAACTAAGTTTACA+AGG | - | chr3_2:54219546-54219565 | Msa0411740:CDS | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+TGG | - | chr3_2:54219686-54219705 | Msa0411740:intron | 25.0% |
| ! | TTGGTTGTGTTTGAATATAA+AGG | - | chr3_2:54219719-54219738 | Msa0411740:intron | 25.0% |
| !! | TCTCATAAAGCCTAATATTT+TGG | - | chr3_2:54220189-54220208 | Msa0411740:CDS | 25.0% |
| !!! | CTAATATTTTGGTAGCAAAT+CGG | - | chr3_2:54220200-54220219 | Msa0411740:intron | 25.0% |
| ! | AGAATGTACCAAGTTTAAAA+GGG | - | chr3_2:54220322-54220341 | Msa0411740:intron | 25.0% |
| ! | TAGCACTAGAAAGTTTATTA+TGG | - | chr3_2:54219408-54219427 | Msa0411740:CDS | 25.0% |
| ! | AAATACCAACTAAGTTTACA+AGG | - | chr3_2:54219546-54219565 | Msa0411740:CDS | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+TGG | - | chr3_2:54219686-54219705 | Msa0411740:intron | 25.0% |
| ! | TTGGTTGTGTTTGAATATAA+AGG | - | chr3_2:54219719-54219738 | Msa0411740:intron | 25.0% |
| !! | TCTCATAAAGCCTAATATTT+TGG | - | chr3_2:54220189-54220208 | Msa0411740:CDS | 25.0% |
| !!! | CTAATATTTTGGTAGCAAAT+CGG | - | chr3_2:54220200-54220219 | Msa0411740:intron | 25.0% |
| ! | AGAATGTACCAAGTTTAAAA+GGG | - | chr3_2:54220322-54220341 | Msa0411740:intron | 25.0% |
| ! | CAATCCTTTGAAGATTAGTT+TGG | + | chr3_2:54219243-54219262 | None:intergenic | 30.0% |
| TGAAATGCATATATGACTTG+TGG | + | chr3_2:54219329-54219348 | None:intergenic | 30.0% | |
| AGTGTTCTATTCCTATAGAA+GGG | - | chr3_2:54219466-54219485 | Msa0411740:intron | 30.0% | |
| AATATAAACACCCCTTCTAT+AGG | + | chr3_2:54219480-54219499 | None:intergenic | 30.0% | |
| GTAAAAATCAAAAACCCCTT+TGG | + | chr3_2:54219523-54219542 | None:intergenic | 30.0% | |
| ! | ATTTTCCATTTTGTGTCATC+AGG | + | chr3_2:54219614-54219633 | None:intergenic | 30.0% |
| AAAAAATCGATGGTGAGATT+TGG | - | chr3_2:54219642-54219661 | Msa0411740:CDS | 30.0% | |
| AAGTATGTGTACATCAAACT+TGG | + | chr3_2:54219750-54219769 | None:intergenic | 30.0% | |
| AAGTTTGATGTACACATACT+TGG | - | chr3_2:54219749-54219768 | Msa0411740:intron | 30.0% | |
| ! | TGATGAATCAGTTGAGATTT+TGG | - | chr3_2:54219847-54219866 | Msa0411740:CDS | 30.0% |
| AAACCTCGAAATTTCTTATG+TGG | + | chr3_2:54219929-54219948 | None:intergenic | 30.0% | |
| ACATAAGAAATTTCGAGGTT+TGG | - | chr3_2:54219928-54219947 | Msa0411740:CDS | 30.0% | |
| TGTTTGCAATGTAAAACTCA+TGG | + | chr3_2:54220051-54220070 | None:intergenic | 30.0% | |
| TACATTGCAAACATATATGC+AGG | - | chr3_2:54220058-54220077 | Msa0411740:CDS | 30.0% | |
| TTCATCAATAAATTGGCCAA+GGG | - | chr3_2:54220108-54220127 | Msa0411740:CDS | 30.0% | |
| !! | CGATTTGCTACCAAAATATT+AGG | + | chr3_2:54220202-54220221 | None:intergenic | 30.0% |
| CAGAATGTACCAAGTTTAAA+AGG | - | chr3_2:54220321-54220340 | Msa0411740:intron | 30.0% | |
| GAATGTACCAAGTTTAAAAG+GGG | - | chr3_2:54220323-54220342 | Msa0411740:intron | 30.0% | |
| TTCAAATTGGGAAAAGATCA+TGG | - | chr3_2:54220376-54220395 | Msa0411740:intron | 30.0% | |
| TGTCTTTGAACTGATAAACA+AGG | - | chr3_2:54220503-54220522 | Msa0411740:CDS | 30.0% | |
| ! | CAATCCTTTGAAGATTAGTT+TGG | + | chr3_2:54219243-54219262 | None:intergenic | 30.0% |
| TGAAATGCATATATGACTTG+TGG | + | chr3_2:54219329-54219348 | None:intergenic | 30.0% | |
| AGTGTTCTATTCCTATAGAA+GGG | - | chr3_2:54219466-54219485 | Msa0411740:intron | 30.0% | |
| AATATAAACACCCCTTCTAT+AGG | + | chr3_2:54219480-54219499 | None:intergenic | 30.0% | |
| GTAAAAATCAAAAACCCCTT+TGG | + | chr3_2:54219523-54219542 | None:intergenic | 30.0% | |
| ! | ATTTTCCATTTTGTGTCATC+AGG | + | chr3_2:54219614-54219633 | None:intergenic | 30.0% |
| AAAAAATCGATGGTGAGATT+TGG | - | chr3_2:54219642-54219661 | Msa0411740:CDS | 30.0% | |
| AAGTATGTGTACATCAAACT+TGG | + | chr3_2:54219750-54219769 | None:intergenic | 30.0% | |
| AAGTTTGATGTACACATACT+TGG | - | chr3_2:54219749-54219768 | Msa0411740:intron | 30.0% | |
| ! | TGATGAATCAGTTGAGATTT+TGG | - | chr3_2:54219847-54219866 | Msa0411740:CDS | 30.0% |
| AAACCTCGAAATTTCTTATG+TGG | + | chr3_2:54219929-54219948 | None:intergenic | 30.0% | |
| ACATAAGAAATTTCGAGGTT+TGG | - | chr3_2:54219928-54219947 | Msa0411740:CDS | 30.0% | |
| TGTTTGCAATGTAAAACTCA+TGG | + | chr3_2:54220051-54220070 | None:intergenic | 30.0% | |
| TACATTGCAAACATATATGC+AGG | - | chr3_2:54220058-54220077 | Msa0411740:CDS | 30.0% | |
| TTCATCAATAAATTGGCCAA+GGG | - | chr3_2:54220108-54220127 | Msa0411740:CDS | 30.0% | |
| !! | CGATTTGCTACCAAAATATT+AGG | + | chr3_2:54220202-54220221 | None:intergenic | 30.0% |
| CAGAATGTACCAAGTTTAAA+AGG | - | chr3_2:54220321-54220340 | Msa0411740:intron | 30.0% | |
| GAATGTACCAAGTTTAAAAG+GGG | - | chr3_2:54220323-54220342 | Msa0411740:intron | 30.0% | |
| TTCAAATTGGGAAAAGATCA+TGG | - | chr3_2:54220376-54220395 | Msa0411740:intron | 30.0% | |
| TGTCTTTGAACTGATAAACA+AGG | - | chr3_2:54220503-54220522 | Msa0411740:CDS | 30.0% | |
| TCCTCCAAACTAATCTTCAA+AGG | - | chr3_2:54219236-54219255 | Msa0411740:CDS | 35.0% | |
| !! | TCCTTTGAAGATTAGTTTGG+AGG | + | chr3_2:54219240-54219259 | None:intergenic | 35.0% |
| CAGTGTTCTATTCCTATAGA+AGG | - | chr3_2:54219465-54219484 | Msa0411740:intron | 35.0% | |
| GTGTTCTATTCCTATAGAAG+GGG | - | chr3_2:54219467-54219486 | Msa0411740:intron | 35.0% | |
| TGTCTCCTTGTAAACTTAGT+TGG | + | chr3_2:54219554-54219573 | None:intergenic | 35.0% | |
| ACTAAGTTTACAAGGAGACA+TGG | - | chr3_2:54219554-54219573 | Msa0411740:CDS | 35.0% | |
| !! | TGGTGAGATTTGGTTTGAAA+AGG | - | chr3_2:54219652-54219671 | Msa0411740:CDS | 35.0% |
| !! | GGTGAGATTTGGTTTGAAAA+GGG | - | chr3_2:54219653-54219672 | Msa0411740:CDS | 35.0% |
| !! | AGATTTGGTTTGAAAAGGGT+TGG | - | chr3_2:54219657-54219676 | Msa0411740:CDS | 35.0% |
| !! | AATCTATTTCTACCGCATTC+TGG | + | chr3_2:54219775-54219794 | None:intergenic | 35.0% |
| ! | CAGTTGAGATTTTGGATGAA+CGG | - | chr3_2:54219855-54219874 | Msa0411740:CDS | 35.0% |
| ! | TTTTGGATGAACGGCTTAAT+CGG | - | chr3_2:54219864-54219883 | Msa0411740:CDS | 35.0% |
| CGAAATTTCTTATGTGGTTG+AGG | + | chr3_2:54219923-54219942 | None:intergenic | 35.0% | |
| CAACCACATAAGAAATTTCG+AGG | - | chr3_2:54219923-54219942 | Msa0411740:CDS | 35.0% | |
| ! | AGAAATTTCGAGGTTTGGTT+TGG | - | chr3_2:54219933-54219952 | Msa0411740:CDS | 35.0% |
| CTTCATCAATAAATTGGCCA+AGG | - | chr3_2:54220107-54220126 | Msa0411740:CDS | 35.0% | |
| ! | TCAAGAACCCCTTTTAAACT+TGG | + | chr3_2:54220333-54220352 | None:intergenic | 35.0% |
| TTGAGAACAAGGAGAAGAAT+GGG | - | chr3_2:54220349-54220368 | Msa0411740:intron | 35.0% | |
| ! | GTTCATGTTTTCAAAAGGGT+CGG | - | chr3_2:54220543-54220562 | Msa0411740:CDS | 35.0% |
| TCCTCCAAACTAATCTTCAA+AGG | - | chr3_2:54219236-54219255 | Msa0411740:CDS | 35.0% | |
| !! | TCCTTTGAAGATTAGTTTGG+AGG | + | chr3_2:54219240-54219259 | None:intergenic | 35.0% |
| CAGTGTTCTATTCCTATAGA+AGG | - | chr3_2:54219465-54219484 | Msa0411740:intron | 35.0% | |
| GTGTTCTATTCCTATAGAAG+GGG | - | chr3_2:54219467-54219486 | Msa0411740:intron | 35.0% | |
| TGTCTCCTTGTAAACTTAGT+TGG | + | chr3_2:54219554-54219573 | None:intergenic | 35.0% | |
| ACTAAGTTTACAAGGAGACA+TGG | - | chr3_2:54219554-54219573 | Msa0411740:CDS | 35.0% | |
| !! | TGGTGAGATTTGGTTTGAAA+AGG | - | chr3_2:54219652-54219671 | Msa0411740:CDS | 35.0% |
| !! | GGTGAGATTTGGTTTGAAAA+GGG | - | chr3_2:54219653-54219672 | Msa0411740:CDS | 35.0% |
| !! | AGATTTGGTTTGAAAAGGGT+TGG | - | chr3_2:54219657-54219676 | Msa0411740:CDS | 35.0% |
| !! | AATCTATTTCTACCGCATTC+TGG | + | chr3_2:54219775-54219794 | None:intergenic | 35.0% |
| ! | CAGTTGAGATTTTGGATGAA+CGG | - | chr3_2:54219855-54219874 | Msa0411740:CDS | 35.0% |
| ! | TTTTGGATGAACGGCTTAAT+CGG | - | chr3_2:54219864-54219883 | Msa0411740:CDS | 35.0% |
| CGAAATTTCTTATGTGGTTG+AGG | + | chr3_2:54219923-54219942 | None:intergenic | 35.0% | |
| CAACCACATAAGAAATTTCG+AGG | - | chr3_2:54219923-54219942 | Msa0411740:CDS | 35.0% | |
| ! | AGAAATTTCGAGGTTTGGTT+TGG | - | chr3_2:54219933-54219952 | Msa0411740:CDS | 35.0% |
| CTTCATCAATAAATTGGCCA+AGG | - | chr3_2:54220107-54220126 | Msa0411740:CDS | 35.0% | |
| ! | TCAAGAACCCCTTTTAAACT+TGG | + | chr3_2:54220333-54220352 | None:intergenic | 35.0% |
| TTGAGAACAAGGAGAAGAAT+GGG | - | chr3_2:54220349-54220368 | Msa0411740:intron | 35.0% | |
| ! | GTTCATGTTTTCAAAAGGGT+CGG | - | chr3_2:54220543-54220562 | Msa0411740:CDS | 35.0% |
| GGAGGATGATCTTGAAGAAA+CGG | + | chr3_2:54219222-54219241 | None:intergenic | 40.0% | |
| ! | ACCTTTTGCTTAGTGACCAA+AGG | - | chr3_2:54219504-54219523 | Msa0411740:intron | 40.0% |
| ! | CCTTTTGCTTAGTGACCAAA+GGG | - | chr3_2:54219505-54219524 | Msa0411740:intron | 40.0% |
| ! | CTTTTGCTTAGTGACCAAAG+GGG | - | chr3_2:54219506-54219525 | Msa0411740:intron | 40.0% |
| TTTACAAGGAGACATGGAGT+TGG | - | chr3_2:54219560-54219579 | Msa0411740:CDS | 40.0% | |
| ! | AGTTGGTCTATCAAATCCTG+TGG | - | chr3_2:54219577-54219596 | Msa0411740:CDS | 40.0% |
| AGACTCCTGATGACACAAAA+TGG | - | chr3_2:54219606-54219625 | Msa0411740:CDS | 40.0% | |
| GAAAATTACTCTCTTGGACG+TGG | - | chr3_2:54219692-54219711 | Msa0411740:intron | 40.0% | |
| !!! | TATTTTGGTAGCAAATCGGC+AGG | - | chr3_2:54220204-54220223 | Msa0411740:intron | 40.0% |
| AAAAGGGGTTCTTGAGAACA+AGG | - | chr3_2:54220338-54220357 | Msa0411740:intron | 40.0% | |
| CTTGAGAACAAGGAGAAGAA+TGG | - | chr3_2:54220348-54220367 | Msa0411740:intron | 40.0% | |
| TGAGAACAAGGAGAAGAATG+GGG | - | chr3_2:54220350-54220369 | Msa0411740:intron | 40.0% | |
| ! | AAGAATGGGGTGCTTCAAAT+TGG | - | chr3_2:54220363-54220382 | Msa0411740:intron | 40.0% |
| ! | AGAATGGGGTGCTTCAAATT+GGG | - | chr3_2:54220364-54220383 | Msa0411740:intron | 40.0% |
| GGAATGTGAAATTGCTCTGT+TGG | - | chr3_2:54220397-54220416 | Msa0411740:intron | 40.0% | |
| TGTTGGTACAACCACACTAA+GGG | - | chr3_2:54220414-54220433 | Msa0411740:intron | 40.0% | |
| TCGTTGTTTGCAAAGGAAAG+TGG | - | chr3_2:54220459-54220478 | Msa0411740:intron | 40.0% | |
| TCAAAGACACAAACATCTCC+CGG | + | chr3_2:54220492-54220511 | None:intergenic | 40.0% | |
| GGAGGATGATCTTGAAGAAA+CGG | + | chr3_2:54219222-54219241 | None:intergenic | 40.0% | |
| ! | ACCTTTTGCTTAGTGACCAA+AGG | - | chr3_2:54219504-54219523 | Msa0411740:intron | 40.0% |
| ! | CCTTTTGCTTAGTGACCAAA+GGG | - | chr3_2:54219505-54219524 | Msa0411740:intron | 40.0% |
| ! | CTTTTGCTTAGTGACCAAAG+GGG | - | chr3_2:54219506-54219525 | Msa0411740:intron | 40.0% |
| TTTACAAGGAGACATGGAGT+TGG | - | chr3_2:54219560-54219579 | Msa0411740:CDS | 40.0% | |
| ! | AGTTGGTCTATCAAATCCTG+TGG | - | chr3_2:54219577-54219596 | Msa0411740:CDS | 40.0% |
| AGACTCCTGATGACACAAAA+TGG | - | chr3_2:54219606-54219625 | Msa0411740:CDS | 40.0% | |
| GAAAATTACTCTCTTGGACG+TGG | - | chr3_2:54219692-54219711 | Msa0411740:intron | 40.0% | |
| !!! | TATTTTGGTAGCAAATCGGC+AGG | - | chr3_2:54220204-54220223 | Msa0411740:intron | 40.0% |
| AAAAGGGGTTCTTGAGAACA+AGG | - | chr3_2:54220338-54220357 | Msa0411740:intron | 40.0% | |
| CTTGAGAACAAGGAGAAGAA+TGG | - | chr3_2:54220348-54220367 | Msa0411740:intron | 40.0% | |
| TGAGAACAAGGAGAAGAATG+GGG | - | chr3_2:54220350-54220369 | Msa0411740:intron | 40.0% | |
| ! | AAGAATGGGGTGCTTCAAAT+TGG | - | chr3_2:54220363-54220382 | Msa0411740:intron | 40.0% |
| ! | AGAATGGGGTGCTTCAAATT+GGG | - | chr3_2:54220364-54220383 | Msa0411740:intron | 40.0% |
| GGAATGTGAAATTGCTCTGT+TGG | - | chr3_2:54220397-54220416 | Msa0411740:intron | 40.0% | |
| TGTTGGTACAACCACACTAA+GGG | - | chr3_2:54220414-54220433 | Msa0411740:intron | 40.0% | |
| TCGTTGTTTGCAAAGGAAAG+TGG | - | chr3_2:54220459-54220478 | Msa0411740:intron | 40.0% | |
| TCAAAGACACAAACATCTCC+CGG | + | chr3_2:54220492-54220511 | None:intergenic | 40.0% | |
| TGATCTTGAAGAAACGGACG+AGG | + | chr3_2:54219216-54219235 | None:intergenic | 45.0% | |
| CTTGTGGAATGTGTGATGTG+TGG | + | chr3_2:54219313-54219332 | None:intergenic | 45.0% | |
| CCCTTTGGTCACTAAGCAAA+AGG | + | chr3_2:54219508-54219527 | None:intergenic | 45.0% | |
| TCAGGAGTCTTTATCACCAC+AGG | + | chr3_2:54219596-54219615 | None:intergenic | 45.0% | |
| ACACATACTTGGCCAGAATG+CGG | - | chr3_2:54219760-54219779 | Msa0411740:intron | 45.0% | |
| TGAACGGCTTAATCGGAAGA+AGG | - | chr3_2:54219871-54219890 | Msa0411740:CDS | 45.0% | |
| TGTGGTTGAGGAGAAACAGA+AGG | + | chr3_2:54219911-54219930 | None:intergenic | 45.0% | |
| CTGTTGGTACAACCACACTA+AGG | - | chr3_2:54220413-54220432 | Msa0411740:intron | 45.0% | |
| CTTTGCAAACAACGACCAAC+CGG | + | chr3_2:54220454-54220473 | None:intergenic | 45.0% | |
| !! | AAAGGAAAGTGGACTGCAAC+CGG | - | chr3_2:54220470-54220489 | Msa0411740:intron | 45.0% |
| TGATCTTGAAGAAACGGACG+AGG | + | chr3_2:54219216-54219235 | None:intergenic | 45.0% | |
| CTTGTGGAATGTGTGATGTG+TGG | + | chr3_2:54219313-54219332 | None:intergenic | 45.0% | |
| CCCTTTGGTCACTAAGCAAA+AGG | + | chr3_2:54219508-54219527 | None:intergenic | 45.0% | |
| TCAGGAGTCTTTATCACCAC+AGG | + | chr3_2:54219596-54219615 | None:intergenic | 45.0% | |
| ACACATACTTGGCCAGAATG+CGG | - | chr3_2:54219760-54219779 | Msa0411740:intron | 45.0% | |
| TGAACGGCTTAATCGGAAGA+AGG | - | chr3_2:54219871-54219890 | Msa0411740:CDS | 45.0% | |
| TGTGGTTGAGGAGAAACAGA+AGG | + | chr3_2:54219911-54219930 | None:intergenic | 45.0% | |
| CTGTTGGTACAACCACACTA+AGG | - | chr3_2:54220413-54220432 | Msa0411740:intron | 45.0% | |
| CTTTGCAAACAACGACCAAC+CGG | + | chr3_2:54220454-54220473 | None:intergenic | 45.0% | |
| !! | AAAGGAAAGTGGACTGCAAC+CGG | - | chr3_2:54220470-54220489 | Msa0411740:intron | 45.0% |
| TGGTAGCAAATCGGCAGGTA+AGG | - | chr3_2:54220209-54220228 | Msa0411740:intron | 50.0% | |
| ! | CGGTTGGTCGTTGTTTGCAA+AGG | - | chr3_2:54220452-54220471 | Msa0411740:intron | 50.0% |
| !! | AAGGAAAGTGGACTGCAACC+GGG | - | chr3_2:54220471-54220490 | Msa0411740:intron | 50.0% |
| TGGTAGCAAATCGGCAGGTA+AGG | - | chr3_2:54220209-54220228 | Msa0411740:intron | 50.0% | |
| ! | CGGTTGGTCGTTGTTTGCAA+AGG | - | chr3_2:54220452-54220471 | Msa0411740:intron | 50.0% |
| !! | AAGGAAAGTGGACTGCAACC+GGG | - | chr3_2:54220471-54220490 | Msa0411740:intron | 50.0% |
| CTCTCTTGGACGTGGCTGTT+TGG | - | chr3_2:54219700-54219719 | Msa0411740:intron | 55.0% | |
| ! | TCCTGAGCTCTAGCATCCCT+TGG | + | chr3_2:54220127-54220146 | None:intergenic | 55.0% |
| ACAACCACACTAAGGGTCGC+TGG | - | chr3_2:54220421-54220440 | Msa0411740:intron | 55.0% | |
| AAAGCCAGCGACCCTTAGTG+TGG | + | chr3_2:54220428-54220447 | None:intergenic | 55.0% | |
| CTCTCTTGGACGTGGCTGTT+TGG | - | chr3_2:54219700-54219719 | Msa0411740:intron | 55.0% | |
| ! | TCCTGAGCTCTAGCATCCCT+TGG | + | chr3_2:54220127-54220146 | None:intergenic | 55.0% |
| ACAACCACACTAAGGGTCGC+TGG | - | chr3_2:54220421-54220440 | Msa0411740:intron | 55.0% | |
| AAAGCCAGCGACCCTTAGTG+TGG | + | chr3_2:54220428-54220447 | None:intergenic | 55.0% | |
| GCCAAGGGATGCTAGAGCTC+AGG | - | chr3_2:54220123-54220142 | Msa0411740:CDS | 60.0% | |
| !! | AAGGGTCGCTGGCTTTCGTC+CGG | - | chr3_2:54220432-54220451 | Msa0411740:intron | 60.0% |
| GCCAAGGGATGCTAGAGCTC+AGG | - | chr3_2:54220123-54220142 | Msa0411740:CDS | 60.0% | |
| !! | AAGGGTCGCTGGCTTTCGTC+CGG | - | chr3_2:54220432-54220451 | Msa0411740:intron | 60.0% |
| !! | GTCGCTGGCTTTCGTCCGGT+TGG | - | chr3_2:54220436-54220455 | Msa0411740:intron | 65.0% |
| !! | GTCGCTGGCTTTCGTCCGGT+TGG | - | chr3_2:54220436-54220455 | Msa0411740:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 54219190 | 54220569 | 54219190 | ID=Msa0411740;Name=Msa0411740 |
| chr3_2 | mRNA | 54219190 | 54220569 | 54219190 | ID=Msa0411740-mRNA-1;Parent=Msa0411740;Name=Msa0411740-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|0.75|0.6|5|0|277 |
| chr3_2 | exon | 54220498 | 54220569 | 54220498 | ID=Msa0411740-mRNA-1:exon:10996;Parent=Msa0411740-mRNA-1 |
| chr3_2 | exon | 54220049 | 54220214 | 54220049 | ID=Msa0411740-mRNA-1:exon:10995;Parent=Msa0411740-mRNA-1 |
| chr3_2 | exon | 54219815 | 54220018 | 54219815 | ID=Msa0411740-mRNA-1:exon:10994;Parent=Msa0411740-mRNA-1 |
| chr3_2 | exon | 54219534 | 54219679 | 54219534 | ID=Msa0411740-mRNA-1:exon:10993;Parent=Msa0411740-mRNA-1 |
| chr3_2 | exon | 54219190 | 54219435 | 54219190 | ID=Msa0411740-mRNA-1:exon:10992;Parent=Msa0411740-mRNA-1 |
| chr3_2 | CDS | 54220498 | 54220569 | 54220498 | ID=Msa0411740-mRNA-1:cds;Parent=Msa0411740-mRNA-1 |
| chr3_2 | CDS | 54220049 | 54220214 | 54220049 | ID=Msa0411740-mRNA-1:cds;Parent=Msa0411740-mRNA-1 |
| chr3_2 | CDS | 54219815 | 54220018 | 54219815 | ID=Msa0411740-mRNA-1:cds;Parent=Msa0411740-mRNA-1 |
| chr3_2 | CDS | 54219534 | 54219679 | 54219534 | ID=Msa0411740-mRNA-1:cds;Parent=Msa0411740-mRNA-1 |
| chr3_2 | CDS | 54219190 | 54219435 | 54219190 | ID=Msa0411740-mRNA-1:cds;Parent=Msa0411740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
