Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364340 | XP_003600455.1 | 76.761 | 284 | 63 | 1 | 1 | 284 | 1 | 281 | 5.60e-155 | 444 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364340 | sp|Q8L3W1|VRN1_ARATH | 26.706 | 337 | 178 | 8 | 12 | 285 | 6 | 336 | 1.85e-33 | 128 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364340 | G8A2Z2 | 76.761 | 284 | 63 | 1 | 1 | 284 | 1 | 281 | 2.68e-155 | 444 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0364340 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0084380 | Msa0364340 | 0.809617 | 1.731926e-50 | -8.615850e-47 |
| Msa0107640 | Msa0364340 | 0.805284 | 1.437788e-49 | -8.615850e-47 |
| Msa0131770 | Msa0364340 | 0.804666 | 1.936146e-49 | -8.615850e-47 |
| Msa0138370 | Msa0364340 | 0.809255 | 2.071542e-50 | -8.615850e-47 |
| Msa0364340 | Msa0381610 | -0.800100 | 1.688474e-48 | -8.615850e-47 |
| Msa0364340 | Msa0411740 | 0.884098 | 2.562402e-71 | -8.615850e-47 |
| Msa0364340 | Msa0556430 | 0.801155 | 1.028688e-48 | -8.615850e-47 |
| Msa0364340 | Msa0729800 | 0.830045 | 3.663156e-55 | -8.615850e-47 |
| Msa0364340 | Msa0731940 | 0.812559 | 3.988327e-51 | -8.615850e-47 |
| Msa0364340 | Msa0760130 | 0.800199 | 1.612186e-48 | -8.615850e-47 |
| Msa0364340 | Msa0768310 | 0.807598 | 4.673626e-50 | -8.615850e-47 |
| Msa0364340 | Msa0808010 | 0.815161 | 1.065513e-51 | -8.615850e-47 |
| Msa0364340 | Msa0808020 | 0.813910 | 2.014633e-51 | -8.615850e-47 |
| Msa0364340 | Msa0810220 | 0.804648 | 1.953202e-49 | -8.615850e-47 |
| Msa0364340 | Msa0844490 | 0.811254 | 7.674938e-51 | -8.615850e-47 |
| Msa0364340 | Msa0848960 | 0.810009 | 1.425941e-50 | -8.615850e-47 |
| Msa0364340 | Msa0914270 | 0.829989 | 3.779431e-55 | -8.615850e-47 |
| Msa0364340 | Msa0967380 | 0.801210 | 1.002404e-48 | -8.615850e-47 |
| Msa0364340 | Msa0969520 | 0.803487 | 3.405139e-49 | -8.615850e-47 |
| Msa0364340 | Msa0974080 | 0.809896 | 1.508197e-50 | -8.615850e-47 |
| Msa0364340 | Msa0980200 | 0.843221 | 1.600943e-58 | -8.615850e-47 |
| Msa0364340 | Msa0981370 | 0.809815 | 1.570495e-50 | -8.615850e-47 |
| Msa0364340 | Msa1023950 | 0.826424 | 2.733508e-54 | -8.615850e-47 |
| Msa0364340 | Msa1121200 | 0.808703 | 2.718297e-50 | -8.615850e-47 |
| Msa0364340 | Msa1121480 | 0.851498 | 8.535509e-61 | -8.615850e-47 |
| Msa0364340 | Msa1121490 | 0.846027 | 2.811204e-59 | -8.615850e-47 |
| Msa0364340 | Msa1137570 | 0.800578 | 1.349775e-48 | -8.615850e-47 |
| Msa0364340 | Msa1144450 | 0.814023 | 1.903050e-51 | -8.615850e-47 |
| Msa0364340 | Msa1366340 | 0.806847 | 6.741630e-50 | -8.615850e-47 |
| Msa0364340 | Msa1397580 | 0.800545 | 1.370854e-48 | -8.615850e-47 |
| Msa0364340 | Msa1466540 | 0.813080 | 3.066874e-51 | -8.615850e-47 |
| Msa0290870 | Msa0364340 | 0.851600 | 7.987443e-61 | -8.615850e-47 |
| Msa0342750 | Msa0364340 | 0.800770 | 1.233132e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364340 | MtrunA17_Chr3g0103181 | 77.113 | 284 | 60 | 3 | 1 | 284 | 1 | 279 | 7.15e-156 | 436 |
| Msa0364340 | MtrunA17_Chr3g0103191 | 76.190 | 252 | 58 | 2 | 1 | 251 | 1 | 251 | 2.11e-134 | 380 |
| Msa0364340 | MtrunA17_Chr3g0103171 | 73.282 | 262 | 67 | 2 | 25 | 284 | 5 | 265 | 8.46e-133 | 377 |
| Msa0364340 | MtrunA17_Chr3g0103201 | 74.091 | 220 | 57 | 0 | 65 | 284 | 1 | 220 | 7.74e-116 | 332 |
| Msa0364340 | MtrunA17_Chr3g0103151 | 76.730 | 159 | 36 | 1 | 1 | 159 | 1 | 158 | 9.00e-84 | 248 |
| Msa0364340 | MtrunA17_Chr3g0103161 | 67.480 | 123 | 40 | 0 | 163 | 285 | 2 | 124 | 8.46e-53 | 168 |
| Msa0364340 | MtrunA17_Chr8g0390841 | 35.514 | 321 | 153 | 12 | 4 | 288 | 31 | 333 | 4.53e-49 | 170 |
| Msa0364340 | MtrunA17_Chr8g0390841 | 50.000 | 62 | 30 | 1 | 224 | 285 | 458 | 518 | 4.50e-12 | 66.2 |
| Msa0364340 | MtrunA17_Chr1g0163071 | 34.130 | 293 | 153 | 8 | 26 | 285 | 2 | 287 | 1.31e-45 | 156 |
| Msa0364340 | MtrunA17_Chr7g0233561 | 33.993 | 303 | 167 | 12 | 10 | 285 | 16 | 312 | 4.61e-43 | 150 |
| Msa0364340 | MtrunA17_Chr3g0131891 | 33.793 | 290 | 175 | 8 | 10 | 285 | 17 | 303 | 5.73e-43 | 149 |
| Msa0364340 | MtrunA17_Chr1g0208771 | 32.776 | 299 | 149 | 8 | 21 | 285 | 10 | 290 | 5.23e-41 | 147 |
| Msa0364340 | MtrunA17_Chr1g0208771 | 25.874 | 286 | 172 | 11 | 12 | 285 | 201 | 458 | 1.67e-15 | 76.3 |
| Msa0364340 | MtrunA17_Chr7g0233521 | 32.384 | 281 | 150 | 9 | 26 | 285 | 2 | 263 | 1.06e-36 | 132 |
| Msa0364340 | MtrunA17_Chr7g0233541 | 31.525 | 295 | 151 | 10 | 26 | 285 | 2 | 280 | 1.58e-32 | 121 |
| Msa0364340 | MtrunA17_Chr1g0163251 | 29.225 | 284 | 183 | 7 | 12 | 287 | 9 | 282 | 1.17e-31 | 121 |
| Msa0364340 | MtrunA17_Chr7g0233531 | 30.483 | 269 | 171 | 6 | 26 | 285 | 2 | 263 | 1.74e-30 | 115 |
| Msa0364340 | MtrunA17_Chr1g0163131 | 29.487 | 312 | 168 | 13 | 10 | 287 | 16 | 309 | 5.41e-30 | 115 |
| Msa0364340 | MtrunA17_Chr4g0067431 | 28.947 | 304 | 182 | 12 | 10 | 284 | 13 | 311 | 1.99e-28 | 111 |
| Msa0364340 | MtrunA17_Chr7g0233571 | 33.649 | 211 | 123 | 5 | 10 | 204 | 8 | 217 | 5.05e-28 | 107 |
| Msa0364340 | MtrunA17_Chr1g0163261 | 26.241 | 282 | 191 | 5 | 11 | 283 | 8 | 281 | 5.71e-27 | 107 |
| Msa0364340 | MtrunA17_Chr5g0419201 | 33.333 | 159 | 103 | 2 | 12 | 167 | 16 | 174 | 1.31e-26 | 103 |
| Msa0364340 | MtrunA17_Chr1g0163181 | 27.119 | 295 | 176 | 10 | 14 | 283 | 11 | 291 | 4.47e-26 | 106 |
| Msa0364340 | MtrunA17_Chr1g0163201 | 28.364 | 275 | 172 | 9 | 25 | 283 | 18 | 283 | 9.04e-25 | 102 |
| Msa0364340 | MtrunA17_Chr5g0429931 | 30.337 | 267 | 150 | 9 | 25 | 287 | 10 | 244 | 2.00e-23 | 96.3 |
| Msa0364340 | MtrunA17_Chr3g0077451 | 28.309 | 272 | 138 | 8 | 24 | 285 | 10 | 234 | 4.27e-23 | 95.1 |
| Msa0364340 | MtrunA17_Chr1g0163221 | 27.645 | 293 | 183 | 8 | 10 | 284 | 9 | 290 | 6.34e-23 | 96.7 |
| Msa0364340 | MtrunA17_Chr3g0077411 | 26.936 | 297 | 173 | 8 | 1 | 284 | 251 | 516 | 1.75e-21 | 94.0 |
| Msa0364340 | MtrunA17_Chr3g0077411 | 41.414 | 99 | 56 | 1 | 12 | 108 | 25 | 123 | 3.67e-17 | 81.3 |
| Msa0364340 | MtrunA17_Chr1g0163231 | 26.042 | 288 | 188 | 10 | 12 | 288 | 9 | 282 | 8.80e-21 | 90.1 |
| Msa0364340 | MtrunA17_Chr4g0033961 | 34.091 | 132 | 78 | 2 | 12 | 134 | 6 | 137 | 1.71e-20 | 90.5 |
| Msa0364340 | MtrunA17_Chr4g0033961 | 30.723 | 166 | 94 | 8 | 134 | 285 | 230 | 388 | 1.41e-11 | 64.3 |
| Msa0364340 | MtrunA17_Chr1g0162441 | 39.216 | 102 | 60 | 1 | 12 | 111 | 7 | 108 | 5.55e-20 | 89.4 |
| Msa0364340 | MtrunA17_Chr1g0163061 | 44.118 | 102 | 54 | 2 | 10 | 108 | 13 | 114 | 1.95e-19 | 85.9 |
| Msa0364340 | MtrunA17_Chr3g0077461 | 29.670 | 273 | 138 | 8 | 12 | 278 | 237 | 461 | 4.18e-19 | 87.0 |
| Msa0364340 | MtrunA17_Chr3g0077461 | 42.697 | 89 | 49 | 1 | 20 | 108 | 19 | 105 | 8.90e-16 | 77.0 |
| Msa0364340 | MtrunA17_Chr1g0171611 | 26.224 | 286 | 178 | 11 | 12 | 288 | 9 | 270 | 7.04e-19 | 84.7 |
| Msa0364340 | MtrunA17_Chr6g0467351 | 41.176 | 102 | 57 | 2 | 10 | 108 | 13 | 114 | 7.67e-19 | 83.2 |
| Msa0364340 | MtrunA17_Chr1g0162161 | 36.800 | 125 | 72 | 3 | 26 | 146 | 4 | 125 | 1.03e-17 | 78.6 |
| Msa0364340 | MtrunA17_Chr1g0163161 | 43.137 | 102 | 50 | 3 | 38 | 134 | 1 | 99 | 4.63e-17 | 75.9 |
| Msa0364340 | MtrunA17_Chr1g0163121 | 40.323 | 124 | 69 | 4 | 24 | 146 | 9 | 128 | 4.68e-17 | 76.3 |
| Msa0364340 | MtrunA17_Chr1g0163191 | 30.769 | 117 | 77 | 2 | 12 | 128 | 9 | 121 | 7.23e-17 | 76.3 |
| Msa0364340 | MtrunA17_Chr1g0154131 | 24.567 | 289 | 199 | 8 | 9 | 281 | 181 | 466 | 1.49e-16 | 79.3 |
| Msa0364340 | MtrunA17_Chr1g0154161 | 23.469 | 294 | 186 | 10 | 13 | 284 | 30 | 306 | 2.87e-16 | 77.8 |
| Msa0364340 | MtrunA17_Chr3g0077381 | 35.345 | 116 | 73 | 1 | 13 | 126 | 23 | 138 | 3.08e-16 | 78.6 |
| Msa0364340 | MtrunA17_Chr3g0077381 | 31.452 | 124 | 83 | 1 | 22 | 143 | 259 | 382 | 1.68e-12 | 67.4 |
| Msa0364340 | MtrunA17_Chr1g0163101 | 34.586 | 133 | 77 | 4 | 10 | 135 | 15 | 144 | 3.41e-16 | 75.1 |
| Msa0364340 | MtrunA17_Chr1g0162411 | 38.679 | 106 | 61 | 2 | 8 | 111 | 3 | 106 | 3.83e-16 | 78.2 |
| Msa0364340 | MtrunA17_Chr6g0476181 | 40.870 | 115 | 64 | 3 | 26 | 140 | 2 | 112 | 4.67e-16 | 73.9 |
| Msa0364340 | MtrunA17_Chr1g0163081 | 40.000 | 115 | 60 | 4 | 26 | 135 | 6 | 116 | 9.45e-16 | 72.8 |
| Msa0364340 | MtrunA17_Chr1g0163241 | 34.188 | 117 | 70 | 3 | 15 | 128 | 14 | 126 | 2.71e-15 | 72.0 |
| Msa0364340 | MtrunA17_Chr4g0009491 | 28.641 | 206 | 113 | 4 | 22 | 220 | 237 | 415 | 2.46e-14 | 72.8 |
| Msa0364340 | MtrunA17_Chr4g0009491 | 33.333 | 93 | 62 | 0 | 16 | 108 | 3 | 95 | 1.71e-12 | 67.4 |
| Msa0364340 | MtrunA17_Chr1g0163141 | 40.426 | 94 | 53 | 2 | 24 | 117 | 9 | 99 | 5.07e-14 | 68.9 |
| Msa0364340 | MtrunA17_Chr3g0077361 | 37.000 | 100 | 60 | 2 | 12 | 108 | 40 | 139 | 1.87e-13 | 70.1 |
| Msa0364340 | MtrunA17_Chr1g0154191 | 23.054 | 334 | 170 | 13 | 22 | 283 | 34 | 352 | 3.79e-13 | 68.9 |
| Msa0364340 | MtrunA17_Chr1g0154151 | 22.013 | 318 | 182 | 11 | 13 | 283 | 13 | 311 | 3.27e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364340 | AT3G18990.1 | 26.706 | 337 | 178 | 8 | 12 | 285 | 6 | 336 | 1.88e-34 | 128 |
| Msa0364340 | AT3G18990.2 | 26.706 | 337 | 178 | 8 | 12 | 285 | 6 | 336 | 4.46e-34 | 127 |
| Msa0364340 | AT1G49475.1 | 39.007 | 141 | 69 | 5 | 11 | 137 | 33 | 170 | 2.31e-18 | 81.3 |
| Msa0364340 | AT3G18960.2 | 39.000 | 100 | 59 | 1 | 11 | 108 | 29 | 128 | 5.77e-17 | 77.8 |
| Msa0364340 | AT3G18960.1 | 39.000 | 100 | 59 | 1 | 11 | 108 | 29 | 128 | 6.77e-17 | 77.8 |
| Msa0364340 | AT4G01580.1 | 36.283 | 113 | 66 | 2 | 11 | 117 | 29 | 141 | 8.57e-17 | 77.0 |
| Msa0364340 | AT3G18960.3 | 41.667 | 84 | 49 | 0 | 25 | 108 | 8 | 91 | 2.50e-14 | 70.1 |
| Msa0364340 | AT4G33280.1 | 23.841 | 302 | 199 | 10 | 10 | 285 | 23 | 319 | 4.02e-14 | 72.0 |
| Msa0364340 | AT1G49480.3 | 29.921 | 127 | 79 | 4 | 164 | 285 | 100 | 221 | 6.25e-13 | 67.0 |
| Msa0364340 | AT1G49480.1 | 29.921 | 127 | 79 | 4 | 164 | 285 | 100 | 221 | 6.25e-13 | 67.0 |
| Msa0364340 | AT1G49480.2 | 29.921 | 127 | 79 | 4 | 164 | 285 | 100 | 221 | 6.25e-13 | 67.0 |
Find 60 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAATGTACCAAGTTTAAA+AGG | 0.192490 | 3_1:+57151502 | Msa0364340:intron |
| ACACAAAATGGAAAATTTAT+TGG | 0.211795 | 3_1:+57150796 | Msa0364340:CDS |
| TGGTGAATCAGTTGAGATTT+TGG | 0.273535 | 3_1:+57151028 | Msa0364340:CDS |
| AAAGAACTTCATCAATAAAT+TGG | 0.285020 | 3_1:+57151282 | Msa0364340:CDS |
| CAATCCTTTGAAGATTAGTT+TGG | 0.289306 | 3_1:-57150418 | None:intergenic |
| AAGAATGGGGTGCTTCAAAT+TGG | 0.305697 | 3_1:+57151544 | Msa0364340:CDS |
| AGACTCCTGATGACACAAAA+TGG | 0.311302 | 3_1:+57150784 | Msa0364340:CDS |
| AGTCTATTTCTACTGCATTC+TGG | 0.333088 | 3_1:-57150950 | None:intergenic |
| CTCTCTTCGACATGGCTGTT+TGG | 0.338494 | 3_1:+57150878 | Msa0364340:CDS |
| TCTCATAAAGCCTAATCATT+TGG | 0.386440 | 3_1:+57151370 | Msa0364340:CDS |
| CTTTGCAAACAACGACCAAC+CGG | 0.388975 | 3_1:-57151632 | None:intergenic |
| TGGTGAGATTTGGTTTGAAA+AGG | 0.404488 | 3_1:+57150830 | Msa0364340:CDS |
| TTGGTTGTGTTTGAATATAA+AGG | 0.407121 | 3_1:+57150897 | Msa0364340:CDS |
| CGAAATTTCTTATGTGGTTG+AGG | 0.409501 | 3_1:-57151101 | None:intergenic |
| AAAGGAAAGTGGACTGCAAC+CGG | 0.409884 | 3_1:+57151651 | Msa0364340:CDS |
| CGATTTGCTACCAAATGATT+AGG | 0.413689 | 3_1:-57151380 | None:intergenic |
| TGTCTCCTTGTAAACTTAGT+TGG | 0.417262 | 3_1:-57150729 | None:intergenic |
| TTGAGAACAAGGAGAAGAAT+GGG | 0.434824 | 3_1:+57151530 | Msa0364340:CDS |
| AAACCTCGAAATTTCTTATG+TGG | 0.438302 | 3_1:-57151107 | None:intergenic |
| AGAATGTACCAAGTTTAAAA+GGG | 0.440224 | 3_1:+57151503 | Msa0364340:intron |
| CAACCACATAAGAAATTTCG+AGG | 0.448613 | 3_1:+57151104 | Msa0364340:CDS |
| TCCTTTGAAGATTAGTTTGG+AGG | 0.466963 | 3_1:-57150415 | None:intergenic |
| AGATTTGGTTTGAAAAGGGT+TGG | 0.470784 | 3_1:+57150835 | Msa0364340:CDS |
| ATTGAGAACAAGGAGAAGAA+TGG | 0.479617 | 3_1:+57151529 | Msa0364340:CDS |
| AAGGGTCGCTGGCTTTCGTC+CGG | 0.479732 | 3_1:+57151613 | Msa0364340:CDS |
| AGAATGGGGTGCTTCAAATT+GGG | 0.486287 | 3_1:+57151545 | Msa0364340:CDS |
| AAAAGGGGTTATTGAGAACA+AGG | 0.491715 | 3_1:+57151519 | Msa0364340:CDS |
| CTAATCATTTGGTAGCAAAT+CGG | 0.496212 | 3_1:+57151381 | Msa0364340:CDS |
| CTGTTGGTACAACCACACTA+AGG | 0.500363 | 3_1:+57151594 | Msa0364340:CDS |
| GGAGGATGATCTTGAAGAAA+CGG | 0.501786 | 3_1:-57150397 | None:intergenic |
| GTCGCTGGCTTTCGTCCGGT+TGG | 0.501854 | 3_1:+57151617 | Msa0364340:CDS |
| GCCAATGGATGCTAGAGCTC+AGG | 0.502842 | 3_1:+57151304 | Msa0364340:CDS |
| TTCAAATTGGGAAAAGATCA+TGG | 0.505109 | 3_1:+57151557 | Msa0364340:CDS |
| GGTGAGATTTGGTTTGAAAA+GGG | 0.518476 | 3_1:+57150831 | Msa0364340:CDS |
| CGGTTGGTCGTTGTTTGCAA+AGG | 0.518916 | 3_1:+57151633 | Msa0364340:CDS |
| TCGTTGTTTGCAAAGGAAAG+TGG | 0.519381 | 3_1:+57151640 | Msa0364340:CDS |
| TCAGGAGTCTTTATCACCAC+AGG | 0.520726 | 3_1:-57150771 | None:intergenic |
| TCCTGAGCTCTAGCATCCAT+TGG | 0.543375 | 3_1:-57151305 | None:intergenic |
| TCCTCCAAACTAATCTTCAA+AGG | 0.552905 | 3_1:+57150414 | Msa0364340:CDS |
| AAGTATGTGTACATCAAACT+TGG | 0.555627 | 3_1:-57150925 | None:intergenic |
| AAATACCAACTAAGTTTACA+AGG | 0.559571 | 3_1:+57150724 | Msa0364340:CDS |
| AATGTTGATCATAGTGATGA+TGG | 0.561184 | 3_1:+57151008 | Msa0364340:CDS |
| TTCATCAATAAATTGGCCAA+TGG | 0.561633 | 3_1:+57151289 | Msa0364340:CDS |
| ACAACCACACTAAGGGTCGC+TGG | 0.574129 | 3_1:+57151602 | Msa0364340:CDS |
| GGAATGTGAAATTGCTCTGT+TGG | 0.576259 | 3_1:+57151578 | Msa0364340:CDS |
| TCAAAGACACAAACATCTCC+CGG | 0.581806 | 3_1:-57151670 | None:intergenic |
| TGAACGGCTTAATCGGAAGA+AGG | 0.583690 | 3_1:+57151052 | Msa0364340:CDS |
| TCATTTGGTAGCAAATCGGC+AGG | 0.586374 | 3_1:+57151385 | Msa0364340:CDS |
| TGATCTTGAAGAAACGGACG+AGG | 0.601322 | 3_1:-57150391 | None:intergenic |
| GAATGTACCAAGTTTAAAAG+GGG | 0.611239 | 3_1:+57151504 | Msa0364340:intron |
| AAGGAAAGTGGACTGCAACC+GGG | 0.612688 | 3_1:+57151652 | Msa0364340:CDS |
| TGTTGGTACAACCACACTAA+GGG | 0.614040 | 3_1:+57151595 | Msa0364340:CDS |
| TTTACAAGGAGACATGGAGT+TGG | 0.631934 | 3_1:+57150738 | Msa0364340:CDS |
| ACTAAGTTTACAAGGAGACA+TGG | 0.632567 | 3_1:+57150732 | Msa0364340:CDS |
| TGTCTTTGAACTGATAAACA+AGG | 0.641859 | 3_1:+57151684 | Msa0364340:CDS |
| TGTGGTTGAGGAGAAACAGA+AGG | 0.646974 | 3_1:-57151089 | None:intergenic |
| GAAAATTACTCTCTTCGACA+TGG | 0.669472 | 3_1:+57150870 | Msa0364340:CDS |
| AAAGCCAGCGACCCTTAGTG+TGG | 0.674774 | 3_1:-57151606 | None:intergenic |
| TGAGAACAAGGAGAAGAATG+GGG | 0.717831 | 3_1:+57151531 | Msa0364340:CDS |
| AGTTGGTCTATCAAATCCTG+TGG | 0.752396 | 3_1:+57150755 | Msa0364340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAAAGTAAATAGTACTAAT+AGG | - | chr3_1:57150452-57150471 | None:intergenic | 20.0% |
| !! | ACACAAAATGGAAAATTTAT+TGG | + | chr3_1:57150796-57150815 | Msa0364340:CDS | 20.0% |
| !! | ATTTATTGGAAAAAAATCGA+TGG | + | chr3_1:57150810-57150829 | Msa0364340:CDS | 20.0% |
| !! | AAAGAACTTCATCAATAAAT+TGG | + | chr3_1:57151282-57151301 | Msa0364340:CDS | 20.0% |
| !! | TTTATGAGAATTGTGAAAAA+AGG | - | chr3_1:57151359-57151378 | None:intergenic | 20.0% |
| !!! | TTAAAGTTCATGTTTTCAAA+AGG | + | chr3_1:57151719-57151738 | Msa0364340:CDS | 20.0% |
| !!! | TAAAGTTCATGTTTTCAAAA+GGG | + | chr3_1:57151720-57151739 | Msa0364340:CDS | 20.0% |
| !! | CTAAAGTAAATAGTACTAAT+AGG | - | chr3_1:57150452-57150471 | None:intergenic | 20.0% |
| !! | ACACAAAATGGAAAATTTAT+TGG | + | chr3_1:57150796-57150815 | Msa0364340:CDS | 20.0% |
| !! | ATTTATTGGAAAAAAATCGA+TGG | + | chr3_1:57150810-57150829 | Msa0364340:CDS | 20.0% |
| !! | AAAGAACTTCATCAATAAAT+TGG | + | chr3_1:57151282-57151301 | Msa0364340:CDS | 20.0% |
| !! | TTTATGAGAATTGTGAAAAA+AGG | - | chr3_1:57151359-57151378 | None:intergenic | 20.0% |
| !!! | TTAAAGTTCATGTTTTCAAA+AGG | + | chr3_1:57151719-57151738 | Msa0364340:CDS | 20.0% |
| !!! | TAAAGTTCATGTTTTCAAAA+GGG | + | chr3_1:57151720-57151739 | Msa0364340:CDS | 20.0% |
| ! | TAGCACTAGAAAGTTTATTA+TGG | + | chr3_1:57150586-57150605 | Msa0364340:intron | 25.0% |
| ! | AAATACCAACTAAGTTTACA+AGG | + | chr3_1:57150724-57150743 | Msa0364340:CDS | 25.0% |
| ! | TTGGTTGTGTTTGAATATAA+AGG | + | chr3_1:57150897-57150916 | Msa0364340:CDS | 25.0% |
| ! | AGAATGTACCAAGTTTAAAA+GGG | + | chr3_1:57151503-57151522 | Msa0364340:intron | 25.0% |
| ! | TAGCACTAGAAAGTTTATTA+TGG | + | chr3_1:57150586-57150605 | Msa0364340:intron | 25.0% |
| ! | AAATACCAACTAAGTTTACA+AGG | + | chr3_1:57150724-57150743 | Msa0364340:CDS | 25.0% |
| ! | TTGGTTGTGTTTGAATATAA+AGG | + | chr3_1:57150897-57150916 | Msa0364340:CDS | 25.0% |
| ! | AGAATGTACCAAGTTTAAAA+GGG | + | chr3_1:57151503-57151522 | Msa0364340:intron | 25.0% |
| ! | CAATCCTTTGAAGATTAGTT+TGG | - | chr3_1:57150421-57150440 | None:intergenic | 30.0% |
| TGAAATGCATATATGACTTG+TGG | - | chr3_1:57150507-57150526 | None:intergenic | 30.0% | |
| AGTGTTCTATTCCTATAGAA+GGG | + | chr3_1:57150644-57150663 | Msa0364340:intron | 30.0% | |
| AATATAAACACCCCTTCTAT+AGG | - | chr3_1:57150658-57150677 | None:intergenic | 30.0% | |
| GTAAAAATCAAAAACCCCTT+TGG | - | chr3_1:57150701-57150720 | None:intergenic | 30.0% | |
| ! | ATTTTCCATTTTGTGTCATC+AGG | - | chr3_1:57150792-57150811 | None:intergenic | 30.0% |
| AAAAAATCGATGGTGAGATT+TGG | + | chr3_1:57150820-57150839 | Msa0364340:CDS | 30.0% | |
| AAGTATGTGTACATCAAACT+TGG | - | chr3_1:57150928-57150947 | None:intergenic | 30.0% | |
| AATGTTGATCATAGTGATGA+TGG | + | chr3_1:57151008-57151027 | Msa0364340:CDS | 30.0% | |
| AAACCTCGAAATTTCTTATG+TGG | - | chr3_1:57151110-57151129 | None:intergenic | 30.0% | |
| AGAAATTTCGAGGTTTAGTT+TGG | + | chr3_1:57151114-57151133 | Msa0364340:intron | 30.0% | |
| TGTTTGCAATGTAAAACTCA+TGG | - | chr3_1:57151232-57151251 | None:intergenic | 30.0% | |
| TACATTGCAAACATATATGC+AGG | + | chr3_1:57151239-57151258 | Msa0364340:intron | 30.0% | |
| TTCATCAATAAATTGGCCAA+TGG | + | chr3_1:57151289-57151308 | Msa0364340:CDS | 30.0% | |
| TCTCATAAAGCCTAATCATT+TGG | + | chr3_1:57151370-57151389 | Msa0364340:CDS | 30.0% | |
| ! | CTAATCATTTGGTAGCAAAT+CGG | + | chr3_1:57151381-57151400 | Msa0364340:CDS | 30.0% |
| CAGAATGTACCAAGTTTAAA+AGG | + | chr3_1:57151502-57151521 | Msa0364340:intron | 30.0% | |
| GAATGTACCAAGTTTAAAAG+GGG | + | chr3_1:57151504-57151523 | Msa0364340:intron | 30.0% | |
| ! | TCAATAACCCCTTTTAAACT+TGG | - | chr3_1:57151514-57151533 | None:intergenic | 30.0% |
| TTCAAATTGGGAAAAGATCA+TGG | + | chr3_1:57151557-57151576 | Msa0364340:CDS | 30.0% | |
| TGTCTTTGAACTGATAAACA+AGG | + | chr3_1:57151684-57151703 | Msa0364340:CDS | 30.0% | |
| ! | CAATCCTTTGAAGATTAGTT+TGG | - | chr3_1:57150421-57150440 | None:intergenic | 30.0% |
| TGAAATGCATATATGACTTG+TGG | - | chr3_1:57150507-57150526 | None:intergenic | 30.0% | |
| AGTGTTCTATTCCTATAGAA+GGG | + | chr3_1:57150644-57150663 | Msa0364340:intron | 30.0% | |
| AATATAAACACCCCTTCTAT+AGG | - | chr3_1:57150658-57150677 | None:intergenic | 30.0% | |
| GTAAAAATCAAAAACCCCTT+TGG | - | chr3_1:57150701-57150720 | None:intergenic | 30.0% | |
| ! | ATTTTCCATTTTGTGTCATC+AGG | - | chr3_1:57150792-57150811 | None:intergenic | 30.0% |
| AAAAAATCGATGGTGAGATT+TGG | + | chr3_1:57150820-57150839 | Msa0364340:CDS | 30.0% | |
| AAGTATGTGTACATCAAACT+TGG | - | chr3_1:57150928-57150947 | None:intergenic | 30.0% | |
| AATGTTGATCATAGTGATGA+TGG | + | chr3_1:57151008-57151027 | Msa0364340:CDS | 30.0% | |
| AAACCTCGAAATTTCTTATG+TGG | - | chr3_1:57151110-57151129 | None:intergenic | 30.0% | |
| AGAAATTTCGAGGTTTAGTT+TGG | + | chr3_1:57151114-57151133 | Msa0364340:intron | 30.0% | |
| TGTTTGCAATGTAAAACTCA+TGG | - | chr3_1:57151232-57151251 | None:intergenic | 30.0% | |
| TACATTGCAAACATATATGC+AGG | + | chr3_1:57151239-57151258 | Msa0364340:intron | 30.0% | |
| TTCATCAATAAATTGGCCAA+TGG | + | chr3_1:57151289-57151308 | Msa0364340:CDS | 30.0% | |
| TCTCATAAAGCCTAATCATT+TGG | + | chr3_1:57151370-57151389 | Msa0364340:CDS | 30.0% | |
| ! | CTAATCATTTGGTAGCAAAT+CGG | + | chr3_1:57151381-57151400 | Msa0364340:CDS | 30.0% |
| CAGAATGTACCAAGTTTAAA+AGG | + | chr3_1:57151502-57151521 | Msa0364340:intron | 30.0% | |
| GAATGTACCAAGTTTAAAAG+GGG | + | chr3_1:57151504-57151523 | Msa0364340:intron | 30.0% | |
| ! | TCAATAACCCCTTTTAAACT+TGG | - | chr3_1:57151514-57151533 | None:intergenic | 30.0% |
| TTCAAATTGGGAAAAGATCA+TGG | + | chr3_1:57151557-57151576 | Msa0364340:CDS | 30.0% | |
| TGTCTTTGAACTGATAAACA+AGG | + | chr3_1:57151684-57151703 | Msa0364340:CDS | 30.0% | |
| TCCTCCAAACTAATCTTCAA+AGG | + | chr3_1:57150414-57150433 | Msa0364340:CDS | 35.0% | |
| !! | TCCTTTGAAGATTAGTTTGG+AGG | - | chr3_1:57150418-57150437 | None:intergenic | 35.0% |
| CAGTGTTCTATTCCTATAGA+AGG | + | chr3_1:57150643-57150662 | Msa0364340:intron | 35.0% | |
| GTGTTCTATTCCTATAGAAG+GGG | + | chr3_1:57150645-57150664 | Msa0364340:intron | 35.0% | |
| TGTCTCCTTGTAAACTTAGT+TGG | - | chr3_1:57150732-57150751 | None:intergenic | 35.0% | |
| ACTAAGTTTACAAGGAGACA+TGG | + | chr3_1:57150732-57150751 | Msa0364340:CDS | 35.0% | |
| !! | TGGTGAGATTTGGTTTGAAA+AGG | + | chr3_1:57150830-57150849 | Msa0364340:CDS | 35.0% |
| !! | GGTGAGATTTGGTTTGAAAA+GGG | + | chr3_1:57150831-57150850 | Msa0364340:CDS | 35.0% |
| !! | AGATTTGGTTTGAAAAGGGT+TGG | + | chr3_1:57150835-57150854 | Msa0364340:CDS | 35.0% |
| GAAAATTACTCTCTTCGACA+TGG | + | chr3_1:57150870-57150889 | Msa0364340:CDS | 35.0% | |
| !! | AGTCTATTTCTACTGCATTC+TGG | - | chr3_1:57150953-57150972 | None:intergenic | 35.0% |
| ! | TGGTGAATCAGTTGAGATTT+TGG | + | chr3_1:57151028-57151047 | Msa0364340:CDS | 35.0% |
| ! | CAGTTGAGATTTTGGATGAA+CGG | + | chr3_1:57151036-57151055 | Msa0364340:CDS | 35.0% |
| ! | TTTTGGATGAACGGCTTAAT+CGG | + | chr3_1:57151045-57151064 | Msa0364340:CDS | 35.0% |
| CGAAATTTCTTATGTGGTTG+AGG | - | chr3_1:57151104-57151123 | None:intergenic | 35.0% | |
| CAACCACATAAGAAATTTCG+AGG | + | chr3_1:57151104-57151123 | Msa0364340:CDS | 35.0% | |
| !! | CGATTTGCTACCAAATGATT+AGG | - | chr3_1:57151383-57151402 | None:intergenic | 35.0% |
| AAAAGGGGTTATTGAGAACA+AGG | + | chr3_1:57151519-57151538 | Msa0364340:CDS | 35.0% | |
| ATTGAGAACAAGGAGAAGAA+TGG | + | chr3_1:57151529-57151548 | Msa0364340:CDS | 35.0% | |
| TTGAGAACAAGGAGAAGAAT+GGG | + | chr3_1:57151530-57151549 | Msa0364340:CDS | 35.0% | |
| ! | GTTCATGTTTTCAAAAGGGT+CGG | + | chr3_1:57151724-57151743 | Msa0364340:CDS | 35.0% |
| TCCTCCAAACTAATCTTCAA+AGG | + | chr3_1:57150414-57150433 | Msa0364340:CDS | 35.0% | |
| !! | TCCTTTGAAGATTAGTTTGG+AGG | - | chr3_1:57150418-57150437 | None:intergenic | 35.0% |
| CAGTGTTCTATTCCTATAGA+AGG | + | chr3_1:57150643-57150662 | Msa0364340:intron | 35.0% | |
| GTGTTCTATTCCTATAGAAG+GGG | + | chr3_1:57150645-57150664 | Msa0364340:intron | 35.0% | |
| TGTCTCCTTGTAAACTTAGT+TGG | - | chr3_1:57150732-57150751 | None:intergenic | 35.0% | |
| ACTAAGTTTACAAGGAGACA+TGG | + | chr3_1:57150732-57150751 | Msa0364340:CDS | 35.0% | |
| !! | TGGTGAGATTTGGTTTGAAA+AGG | + | chr3_1:57150830-57150849 | Msa0364340:CDS | 35.0% |
| !! | GGTGAGATTTGGTTTGAAAA+GGG | + | chr3_1:57150831-57150850 | Msa0364340:CDS | 35.0% |
| !! | AGATTTGGTTTGAAAAGGGT+TGG | + | chr3_1:57150835-57150854 | Msa0364340:CDS | 35.0% |
| GAAAATTACTCTCTTCGACA+TGG | + | chr3_1:57150870-57150889 | Msa0364340:CDS | 35.0% | |
| !! | AGTCTATTTCTACTGCATTC+TGG | - | chr3_1:57150953-57150972 | None:intergenic | 35.0% |
| ! | TGGTGAATCAGTTGAGATTT+TGG | + | chr3_1:57151028-57151047 | Msa0364340:CDS | 35.0% |
| ! | CAGTTGAGATTTTGGATGAA+CGG | + | chr3_1:57151036-57151055 | Msa0364340:CDS | 35.0% |
| ! | TTTTGGATGAACGGCTTAAT+CGG | + | chr3_1:57151045-57151064 | Msa0364340:CDS | 35.0% |
| CGAAATTTCTTATGTGGTTG+AGG | - | chr3_1:57151104-57151123 | None:intergenic | 35.0% | |
| CAACCACATAAGAAATTTCG+AGG | + | chr3_1:57151104-57151123 | Msa0364340:CDS | 35.0% | |
| !! | CGATTTGCTACCAAATGATT+AGG | - | chr3_1:57151383-57151402 | None:intergenic | 35.0% |
| AAAAGGGGTTATTGAGAACA+AGG | + | chr3_1:57151519-57151538 | Msa0364340:CDS | 35.0% | |
| ATTGAGAACAAGGAGAAGAA+TGG | + | chr3_1:57151529-57151548 | Msa0364340:CDS | 35.0% | |
| TTGAGAACAAGGAGAAGAAT+GGG | + | chr3_1:57151530-57151549 | Msa0364340:CDS | 35.0% | |
| ! | GTTCATGTTTTCAAAAGGGT+CGG | + | chr3_1:57151724-57151743 | Msa0364340:CDS | 35.0% |
| GGAGGATGATCTTGAAGAAA+CGG | - | chr3_1:57150400-57150419 | None:intergenic | 40.0% | |
| ! | ACCTTTTGCTTAGTGACCAA+AGG | + | chr3_1:57150682-57150701 | Msa0364340:intron | 40.0% |
| ! | CCTTTTGCTTAGTGACCAAA+GGG | + | chr3_1:57150683-57150702 | Msa0364340:intron | 40.0% |
| ! | CTTTTGCTTAGTGACCAAAG+GGG | + | chr3_1:57150684-57150703 | Msa0364340:intron | 40.0% |
| TTTACAAGGAGACATGGAGT+TGG | + | chr3_1:57150738-57150757 | Msa0364340:CDS | 40.0% | |
| ! | AGTTGGTCTATCAAATCCTG+TGG | + | chr3_1:57150755-57150774 | Msa0364340:CDS | 40.0% |
| AGACTCCTGATGACACAAAA+TGG | + | chr3_1:57150784-57150803 | Msa0364340:CDS | 40.0% | |
| TGAGAACAAGGAGAAGAATG+GGG | + | chr3_1:57151531-57151550 | Msa0364340:CDS | 40.0% | |
| ! | AAGAATGGGGTGCTTCAAAT+TGG | + | chr3_1:57151544-57151563 | Msa0364340:CDS | 40.0% |
| ! | AGAATGGGGTGCTTCAAATT+GGG | + | chr3_1:57151545-57151564 | Msa0364340:CDS | 40.0% |
| GGAATGTGAAATTGCTCTGT+TGG | + | chr3_1:57151578-57151597 | Msa0364340:CDS | 40.0% | |
| TGTTGGTACAACCACACTAA+GGG | + | chr3_1:57151595-57151614 | Msa0364340:CDS | 40.0% | |
| TCGTTGTTTGCAAAGGAAAG+TGG | + | chr3_1:57151640-57151659 | Msa0364340:CDS | 40.0% | |
| TCAAAGACACAAACATCTCC+CGG | - | chr3_1:57151673-57151692 | None:intergenic | 40.0% | |
| GGAGGATGATCTTGAAGAAA+CGG | - | chr3_1:57150400-57150419 | None:intergenic | 40.0% | |
| ! | ACCTTTTGCTTAGTGACCAA+AGG | + | chr3_1:57150682-57150701 | Msa0364340:intron | 40.0% |
| ! | CCTTTTGCTTAGTGACCAAA+GGG | + | chr3_1:57150683-57150702 | Msa0364340:intron | 40.0% |
| ! | CTTTTGCTTAGTGACCAAAG+GGG | + | chr3_1:57150684-57150703 | Msa0364340:intron | 40.0% |
| TTTACAAGGAGACATGGAGT+TGG | + | chr3_1:57150738-57150757 | Msa0364340:CDS | 40.0% | |
| ! | AGTTGGTCTATCAAATCCTG+TGG | + | chr3_1:57150755-57150774 | Msa0364340:CDS | 40.0% |
| AGACTCCTGATGACACAAAA+TGG | + | chr3_1:57150784-57150803 | Msa0364340:CDS | 40.0% | |
| TGAGAACAAGGAGAAGAATG+GGG | + | chr3_1:57151531-57151550 | Msa0364340:CDS | 40.0% | |
| ! | AAGAATGGGGTGCTTCAAAT+TGG | + | chr3_1:57151544-57151563 | Msa0364340:CDS | 40.0% |
| ! | AGAATGGGGTGCTTCAAATT+GGG | + | chr3_1:57151545-57151564 | Msa0364340:CDS | 40.0% |
| GGAATGTGAAATTGCTCTGT+TGG | + | chr3_1:57151578-57151597 | Msa0364340:CDS | 40.0% | |
| TGTTGGTACAACCACACTAA+GGG | + | chr3_1:57151595-57151614 | Msa0364340:CDS | 40.0% | |
| TCGTTGTTTGCAAAGGAAAG+TGG | + | chr3_1:57151640-57151659 | Msa0364340:CDS | 40.0% | |
| TCAAAGACACAAACATCTCC+CGG | - | chr3_1:57151673-57151692 | None:intergenic | 40.0% | |
| TGATCTTGAAGAAACGGACG+AGG | - | chr3_1:57150394-57150413 | None:intergenic | 45.0% | |
| CTTGTGGAATGTGTGATGTG+TGG | - | chr3_1:57150491-57150510 | None:intergenic | 45.0% | |
| CCCTTTGGTCACTAAGCAAA+AGG | - | chr3_1:57150686-57150705 | None:intergenic | 45.0% | |
| TCAGGAGTCTTTATCACCAC+AGG | - | chr3_1:57150774-57150793 | None:intergenic | 45.0% | |
| TGAACGGCTTAATCGGAAGA+AGG | + | chr3_1:57151052-57151071 | Msa0364340:CDS | 45.0% | |
| TGTGGTTGAGGAGAAACAGA+AGG | - | chr3_1:57151092-57151111 | None:intergenic | 45.0% | |
| ! | TCATTTGGTAGCAAATCGGC+AGG | + | chr3_1:57151385-57151404 | Msa0364340:CDS | 45.0% |
| CTGTTGGTACAACCACACTA+AGG | + | chr3_1:57151594-57151613 | Msa0364340:CDS | 45.0% | |
| CTTTGCAAACAACGACCAAC+CGG | - | chr3_1:57151635-57151654 | None:intergenic | 45.0% | |
| !! | AAAGGAAAGTGGACTGCAAC+CGG | + | chr3_1:57151651-57151670 | Msa0364340:CDS | 45.0% |
| TGATCTTGAAGAAACGGACG+AGG | - | chr3_1:57150394-57150413 | None:intergenic | 45.0% | |
| CTTGTGGAATGTGTGATGTG+TGG | - | chr3_1:57150491-57150510 | None:intergenic | 45.0% | |
| CCCTTTGGTCACTAAGCAAA+AGG | - | chr3_1:57150686-57150705 | None:intergenic | 45.0% | |
| TCAGGAGTCTTTATCACCAC+AGG | - | chr3_1:57150774-57150793 | None:intergenic | 45.0% | |
| TGAACGGCTTAATCGGAAGA+AGG | + | chr3_1:57151052-57151071 | Msa0364340:CDS | 45.0% | |
| TGTGGTTGAGGAGAAACAGA+AGG | - | chr3_1:57151092-57151111 | None:intergenic | 45.0% | |
| ! | TCATTTGGTAGCAAATCGGC+AGG | + | chr3_1:57151385-57151404 | Msa0364340:CDS | 45.0% |
| CTGTTGGTACAACCACACTA+AGG | + | chr3_1:57151594-57151613 | Msa0364340:CDS | 45.0% | |
| CTTTGCAAACAACGACCAAC+CGG | - | chr3_1:57151635-57151654 | None:intergenic | 45.0% | |
| !! | AAAGGAAAGTGGACTGCAAC+CGG | + | chr3_1:57151651-57151670 | Msa0364340:CDS | 45.0% |
| CTCTCTTCGACATGGCTGTT+TGG | + | chr3_1:57150878-57150897 | Msa0364340:CDS | 50.0% | |
| ! | TCCTGAGCTCTAGCATCCAT+TGG | - | chr3_1:57151308-57151327 | None:intergenic | 50.0% |
| TGGTAGCAAATCGGCAGGTA+AGG | + | chr3_1:57151390-57151409 | Msa0364340:intron | 50.0% | |
| ! | CGGTTGGTCGTTGTTTGCAA+AGG | + | chr3_1:57151633-57151652 | Msa0364340:CDS | 50.0% |
| !! | AAGGAAAGTGGACTGCAACC+GGG | + | chr3_1:57151652-57151671 | Msa0364340:CDS | 50.0% |
| CTCTCTTCGACATGGCTGTT+TGG | + | chr3_1:57150878-57150897 | Msa0364340:CDS | 50.0% | |
| ! | TCCTGAGCTCTAGCATCCAT+TGG | - | chr3_1:57151308-57151327 | None:intergenic | 50.0% |
| TGGTAGCAAATCGGCAGGTA+AGG | + | chr3_1:57151390-57151409 | Msa0364340:intron | 50.0% | |
| ! | CGGTTGGTCGTTGTTTGCAA+AGG | + | chr3_1:57151633-57151652 | Msa0364340:CDS | 50.0% |
| !! | AAGGAAAGTGGACTGCAACC+GGG | + | chr3_1:57151652-57151671 | Msa0364340:CDS | 50.0% |
| GCCAATGGATGCTAGAGCTC+AGG | + | chr3_1:57151304-57151323 | Msa0364340:CDS | 55.0% | |
| ACAACCACACTAAGGGTCGC+TGG | + | chr3_1:57151602-57151621 | Msa0364340:CDS | 55.0% | |
| AAAGCCAGCGACCCTTAGTG+TGG | - | chr3_1:57151609-57151628 | None:intergenic | 55.0% | |
| GCCAATGGATGCTAGAGCTC+AGG | + | chr3_1:57151304-57151323 | Msa0364340:CDS | 55.0% | |
| ACAACCACACTAAGGGTCGC+TGG | + | chr3_1:57151602-57151621 | Msa0364340:CDS | 55.0% | |
| AAAGCCAGCGACCCTTAGTG+TGG | - | chr3_1:57151609-57151628 | None:intergenic | 55.0% | |
| !! | AAGGGTCGCTGGCTTTCGTC+CGG | + | chr3_1:57151613-57151632 | Msa0364340:CDS | 60.0% |
| !! | AAGGGTCGCTGGCTTTCGTC+CGG | + | chr3_1:57151613-57151632 | Msa0364340:CDS | 60.0% |
| !! | GTCGCTGGCTTTCGTCCGGT+TGG | + | chr3_1:57151617-57151636 | Msa0364340:CDS | 65.0% |
| !! | GTCGCTGGCTTTCGTCCGGT+TGG | + | chr3_1:57151617-57151636 | Msa0364340:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 57150368 | 57151750 | 57150368 | ID=Msa0364340;Name=Msa0364340 |
| chr3_1 | mRNA | 57150368 | 57151750 | 57150368 | ID=Msa0364340-mRNA-1;Parent=Msa0364340;Name=Msa0364340-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|4|0|288 |
| chr3_1 | exon | 57150368 | 57150439 | 57150368 | ID=Msa0364340-mRNA-1:exon:10722;Parent=Msa0364340-mRNA-1 |
| chr3_1 | exon | 57150723 | 57151125 | 57150723 | ID=Msa0364340-mRNA-1:exon:10723;Parent=Msa0364340-mRNA-1 |
| chr3_1 | exon | 57151261 | 57151406 | 57151261 | ID=Msa0364340-mRNA-1:exon:10724;Parent=Msa0364340-mRNA-1 |
| chr3_1 | exon | 57151505 | 57151750 | 57151505 | ID=Msa0364340-mRNA-1:exon:10725;Parent=Msa0364340-mRNA-1 |
| chr3_1 | CDS | 57150368 | 57150439 | 57150368 | ID=Msa0364340-mRNA-1:cds;Parent=Msa0364340-mRNA-1 |
| chr3_1 | CDS | 57150723 | 57151125 | 57150723 | ID=Msa0364340-mRNA-1:cds;Parent=Msa0364340-mRNA-1 |
| chr3_1 | CDS | 57151261 | 57151406 | 57151261 | ID=Msa0364340-mRNA-1:cds;Parent=Msa0364340-mRNA-1 |
| chr3_1 | CDS | 57151505 | 57151750 | 57151505 | ID=Msa0364340-mRNA-1:cds;Parent=Msa0364340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
