Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0412250 | XP_013460123.1 | 98.658 | 596 | 6 | 1 | 1 | 596 | 1 | 594 | 0.0 | 1226 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0412250 | sp|P53537|PHSH_VICFA | 93.792 | 596 | 37 | 0 | 1 | 596 | 1 | 596 | 0.0 | 1177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0412250 | A0A072UWD1 | 98.658 | 596 | 6 | 1 | 1 | 596 | 1 | 594 | 0.0 | 1226 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0364780 | Msa0412250 | 0.977602 | 4.139782e-144 | -8.615850e-47 |
| Msa0412190 | Msa0412250 | 0.817889 | 2.609293e-52 | -8.615850e-47 |
| Msa0412250 | Msa0456760 | 0.960748 | 6.570162e-119 | -8.615850e-47 |
| Msa0412250 | Msa0504090 | 0.975977 | 5.936198e-141 | -8.615850e-47 |
| Msa0412250 | Msa0928940 | 0.806098 | 9.700709e-50 | -8.615850e-47 |
| Msa0412250 | Msa1071640 | 0.812741 | 3.638818e-51 | -8.615850e-47 |
| Msa0412250 | Msa1137940 | 0.804112 | 2.525784e-49 | -8.615850e-47 |
| Msa0412250 | Msa1158090 | 0.821140 | 4.730606e-53 | -8.615850e-47 |
| Msa0412250 | Msa1180050 | 0.828979 | 6.651093e-55 | -8.615850e-47 |
| Msa0412250 | Msa1198720 | 0.805303 | 1.424687e-49 | -8.615850e-47 |
| Msa0412250 | Msa1252300 | 0.803294 | 3.733415e-49 | -8.615850e-47 |
| Msa0412250 | Msa1270770 | 0.828797 | 7.363802e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0412250 | MtrunA17_Chr3g0103771 | 98.658 | 596 | 6 | 1 | 1 | 596 | 1 | 594 | 0.0 | 1226 |
| Msa0412250 | MtrunA17_Chr2g0282731 | 49.043 | 575 | 283 | 7 | 26 | 596 | 180 | 748 | 0.0 | 572 |
| Msa0412250 | MtrunA17_Chr6g0454411 | 62.019 | 416 | 152 | 3 | 26 | 436 | 90 | 504 | 3.72e-180 | 535 |
| Msa0412250 | MtrunA17_Chr6g0454411 | 60.000 | 155 | 62 | 0 | 442 | 596 | 576 | 730 | 1.05e-60 | 217 |
| Msa0412250 | MtrunA17_Chr4g0043041 | 56.044 | 455 | 194 | 3 | 18 | 466 | 71 | 525 | 1.99e-176 | 525 |
| Msa0412250 | MtrunA17_Chr4g0043041 | 60.248 | 161 | 63 | 1 | 437 | 596 | 574 | 734 | 5.39e-62 | 221 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0412250 | AT3G46970.1 | 79.865 | 591 | 117 | 1 | 8 | 596 | 5 | 595 | 0.0 | 1008 |
| Msa0412250 | AT3G29320.1 | 56.598 | 629 | 217 | 5 | 24 | 596 | 87 | 715 | 0.0 | 739 |
Find 154 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGGCTTGCTTCTTGCTTTC+TGG | 0.078572 | 3_2:-55534765 | Msa0412250:CDS |
| TCAATATATCACTGTGTAAT+TGG | 0.122849 | 3_2:+55532813 | None:intergenic |
| TTAACCACTTAGTGATTATT+TGG | 0.195969 | 3_2:+55532681 | None:intergenic |
| ACTTTCCAACATGCGCATTT+TGG | 0.216640 | 3_2:-55533133 | Msa0412250:CDS |
| CCATCCGAACAACTGGCTTC+TGG | 0.226210 | 3_2:+55533100 | None:intergenic |
| GACCATTTCTCCAGTGCTTC+GGG | 0.261697 | 3_2:+55533355 | None:intergenic |
| AACACTTAATTTACCTGCTT+GGG | 0.262521 | 3_2:-55534732 | Msa0412250:CDS |
| TGAATGTCAAATAGAGTATC+AGG | 0.269003 | 3_2:+55532417 | None:intergenic |
| TTGCAAATTATGTTTCAATA+TGG | 0.291770 | 3_2:-55532778 | Msa0412250:CDS |
| TTTACACTTACCTTCCATTA+GGG | 0.309550 | 3_2:+55534456 | None:intergenic |
| ATTTACACTTACCTTCCATT+AGG | 0.314637 | 3_2:+55534455 | None:intergenic |
| AGAGTTGATGCGTTTACTTA+TGG | 0.314885 | 3_2:-55533592 | Msa0412250:CDS |
| GTGTGTATGCCAGCCGAAAA+TGG | 0.331791 | 3_2:-55534338 | Msa0412250:intron |
| GCTTATGATGTGCCAATTCC+TGG | 0.336675 | 3_2:-55534288 | Msa0412250:CDS |
| GCGAAGACTGATGGTGTTCT+TGG | 0.337746 | 3_2:+55534257 | None:intergenic |
| CCTGCCTCCTCTCCTTGAAC+CGG | 0.339166 | 3_2:+55533691 | None:intergenic |
| ACCACCATTAGTCTCTTCTA+TGG | 0.342780 | 3_2:+55536222 | None:intergenic |
| GTGTTCTTGGTTTGGTATCC+AGG | 0.343283 | 3_2:+55534270 | None:intergenic |
| GCATCAACTCTGGTATTGAT+AGG | 0.348225 | 3_2:+55533604 | None:intergenic |
| TTGGTTTGGTATCCAGGAAT+TGG | 0.357731 | 3_2:+55534276 | None:intergenic |
| TTGTACCCTATCAGATTCTT+TGG | 0.358703 | 3_2:-55534494 | Msa0412250:CDS |
| CATCCGAACAACTGGCTTCT+GGG | 0.363739 | 3_2:+55533101 | None:intergenic |
| AGACCATTTCTCCAGTGCTT+CGG | 0.373578 | 3_2:+55533354 | None:intergenic |
| CAACACTTAATTTACCTGCT+TGG | 0.390154 | 3_2:-55534733 | Msa0412250:CDS |
| AAATTTGCCATCCGAACAAC+TGG | 0.392112 | 3_2:+55533093 | None:intergenic |
| ACACCATCAGTCTTCGCCTC+TGG | 0.401475 | 3_2:-55534251 | Msa0412250:CDS |
| GCTTCACTCACGAGCTCAAC+AGG | 0.402172 | 3_2:-55534157 | Msa0412250:intron |
| CGAGCCTTGACCAATGCTAT+TGG | 0.405477 | 3_2:-55535101 | Msa0412250:CDS |
| TTCTTGCTTTCTGGATTCCA+TGG | 0.411344 | 3_2:-55534756 | Msa0412250:CDS |
| GACTGATGGTGTTCTTGGTT+TGG | 0.418565 | 3_2:+55534262 | None:intergenic |
| TCCCCGAAGCACTGGAGAAA+TGG | 0.420397 | 3_2:-55533357 | Msa0412250:CDS |
| CCACCTTCTGTGGCATCCCC+AGG | 0.425804 | 3_2:+55533872 | None:intergenic |
| ACCTGGCCAAAGAATCTGAT+AGG | 0.427402 | 3_2:+55534488 | None:intergenic |
| TGTTCGTGATCGTCTCGTTC+AGG | 0.427671 | 3_2:-55536038 | Msa0412250:intron |
| CAATATATCACTGTGTAATT+GGG | 0.428524 | 3_2:+55532814 | None:intergenic |
| CACTGTCCTCCCCGAAGCAC+TGG | 0.430389 | 3_2:-55533365 | Msa0412250:CDS |
| GATAAGTAGTAAGTTTGCTT+GGG | 0.432852 | 3_2:+55535143 | None:intergenic |
| TGATAAGTAGTAAGTTTGCT+TGG | 0.439266 | 3_2:+55535142 | None:intergenic |
| GGACATCATTTCCCGGTTCA+AGG | 0.446314 | 3_2:-55533703 | Msa0412250:CDS |
| AGGTTCCAAAATAAAACTAA+TGG | 0.448080 | 3_2:-55532749 | Msa0412250:CDS |
| GTGATTATTTGGCTTAGCTC+AGG | 0.450262 | 3_2:+55532692 | None:intergenic |
| AATTACAGGACATCATTTCC+CGG | 0.450355 | 3_2:-55533710 | Msa0412250:intron |
| GCTGATGCTTTGCGCAAGTT+CGG | 0.450707 | 3_2:-55535053 | Msa0412250:CDS |
| ATGTTAGAAGCAATCTCATC+AGG | 0.454704 | 3_2:+55536142 | None:intergenic |
| TTATCAATGGAGTTCCTTCA+AGG | 0.457142 | 3_2:-55535125 | Msa0412250:CDS |
| GCCAATGGATTTGCAACAGC+AGG | 0.459057 | 3_2:+55536172 | None:intergenic |
| AGGAGGAAGTTGCTGAGGAC+TGG | 0.459433 | 3_2:-55534652 | Msa0412250:CDS |
| CACCATCAGTCTTCGCCTCT+GGG | 0.463304 | 3_2:-55534250 | Msa0412250:CDS |
| CTTATGGATGAAGAAGGGCT+TGG | 0.467886 | 3_2:-55533576 | Msa0412250:CDS |
| AGGAGAGGAGGCAGGGACCT+TGG | 0.468311 | 3_2:-55533683 | Msa0412250:CDS |
| CCGGTTCAAGGAGAGGAGGC+AGG | 0.470005 | 3_2:-55533691 | Msa0412250:CDS |
| GCACTAGGAAATGGTGGTCT+TGG | 0.471328 | 3_2:-55534788 | Msa0412250:CDS |
| TGGTCAAGGCTCGACCTTGA+AGG | 0.476017 | 3_2:+55535111 | None:intergenic |
| ATTCAAATTTCCAATAGCAT+TGG | 0.479715 | 3_2:+55535091 | None:intergenic |
| CCCTATCAGATTCTTTGGCC+AGG | 0.486248 | 3_2:-55534489 | Msa0412250:CDS |
| ATCCCCAGAAGCCAGTTGTT+CGG | 0.488192 | 3_2:-55533104 | Msa0412250:CDS |
| CGTTTACTTATGGATGAAGA+AGG | 0.488789 | 3_2:-55533582 | Msa0412250:CDS |
| GGCTTGGATGGGATGAAGCA+TGG | 0.489941 | 3_2:-55533560 | Msa0412250:CDS |
| CAGGTCGAGGTTAACCCTAA+TGG | 0.489967 | 3_2:-55534470 | Msa0412250:CDS |
| GGAGGCAGGGACCTTGGAAC+TGG | 0.491790 | 3_2:-55533677 | Msa0412250:CDS |
| AGAGTGGTCGTCTGCAAAGA+TGG | 0.498113 | 3_2:-55532496 | Msa0412250:CDS |
| TTCACTCTCAAGATCCAGTC+GGG | 0.498449 | 3_2:+55533155 | None:intergenic |
| CAAACAGAAGTTTAGCCCTT+GGG | 0.500543 | 3_2:-55534537 | Msa0412250:intron |
| CAGTACGTTCTGAAGGTGAC+AGG | 0.500818 | 3_2:-55532453 | Msa0412250:CDS |
| CCAAACAGAAGTTTAGCCCT+TGG | 0.504145 | 3_2:-55534538 | Msa0412250:intron |
| TGGATGAAGAAGGGCTTGGA+TGG | 0.504963 | 3_2:-55533572 | Msa0412250:CDS |
| TACGTGAAGAAGATATTTGA+AGG | 0.507748 | 3_2:+55536710 | None:intergenic |
| AGCAACCTTCGTCGGAAACT+CGG | 0.508546 | 3_2:+55533653 | None:intergenic |
| GCAAACTTACTACTTATCAA+TGG | 0.509704 | 3_2:-55535138 | Msa0412250:CDS |
| GATAATCGCAAAAGAAGGTC+AGG | 0.510735 | 3_2:-55534672 | Msa0412250:CDS |
| CAGATTCTTTGGCCAGGTCG+AGG | 0.513698 | 3_2:-55534483 | Msa0412250:CDS |
| TCCTGCTGTTGCAAATCCAT+TGG | 0.514029 | 3_2:-55536173 | Msa0412250:CDS |
| AAGGATGCAGCACTAGGAAA+TGG | 0.519194 | 3_2:-55534797 | Msa0412250:CDS |
| CCTGGGGATGCCACAGAAGG+TGG | 0.519394 | 3_2:-55533872 | Msa0412250:CDS |
| GGCCATCTATTATAGGTGAA+TGG | 0.521441 | 3_2:-55532842 | Msa0412250:intron |
| CAGGAAAAGGATGCAGCACT+AGG | 0.524810 | 3_2:-55534803 | Msa0412250:CDS |
| GAAGAAGATATTTGAAGGAA+TGG | 0.527283 | 3_2:+55536715 | None:intergenic |
| TTCCCAGAGGCGAAGACTGA+TGG | 0.530304 | 3_2:+55534248 | None:intergenic |
| TTTGAAGGAATGGTATTGCT+AGG | 0.531412 | 3_2:+55536725 | None:intergenic |
| ACTCTGGTATTGATAGGGTC+GGG | 0.533523 | 3_2:+55533610 | None:intergenic |
| AAACAGATAATCGCAAAAGA+AGG | 0.533857 | 3_2:-55534677 | Msa0412250:CDS |
| TGTTCAAGCTCAAACTTGAA+AGG | 0.537591 | 3_2:+55536085 | None:intergenic |
| ACACTTAATTTACCTGCTTG+GGG | 0.538160 | 3_2:-55534731 | Msa0412250:CDS |
| ATAAGTAAACGCATCAACTC+TGG | 0.539867 | 3_2:+55533594 | None:intergenic |
| GCCAGCCGAAAATGGATTGG+CGG | 0.540426 | 3_2:-55534330 | Msa0412250:intron |
| AACTCTGGTATTGATAGGGT+CGG | 0.542303 | 3_2:+55533609 | None:intergenic |
| GCTTGGATGGGATGAAGCAT+GGG | 0.543851 | 3_2:-55533559 | Msa0412250:CDS |
| ATGGCATTACACCTCGAAGA+TGG | 0.545189 | 3_2:-55532730 | Msa0412250:CDS |
| CAGAAGGTGGAAAACTTCTA+CGG | 0.546061 | 3_2:-55533859 | Msa0412250:CDS |
| GATGGCTAATAAGCAGCGCT+TGG | 0.548918 | 3_2:-55532478 | Msa0412250:CDS |
| ACCGATCTTGACTTACTGAC+AGG | 0.549416 | 3_2:-55532641 | Msa0412250:CDS |
| CTGCCTCCTCTCCTTGAACC+GGG | 0.550039 | 3_2:+55533692 | None:intergenic |
| GAAGAGACTAATGGTGGTGG+TGG | 0.550100 | 3_2:-55536217 | Msa0412250:CDS |
| ACTTGAAGAAATAACCGAGC+AGG | 0.556341 | 3_2:-55535024 | Msa0412250:intron |
| TAGGAAATGGTGGTCTTGGT+CGG | 0.558516 | 3_2:-55534784 | Msa0412250:CDS |
| ATTGTCCAAAATGCGCATGT+TGG | 0.561027 | 3_2:+55533128 | None:intergenic |
| GAAATTGCTTCCTCGTCACA+TGG | 0.561842 | 3_2:-55533317 | Msa0412250:CDS |
| GTAGCTGCCTCTTGTACTCG+TGG | 0.562138 | 3_2:+55532382 | None:intergenic |
| ATCCGAACAACTGGCTTCTG+GGG | 0.563192 | 3_2:+55533102 | None:intergenic |
| CATCAACTCTGGTATTGATA+GGG | 0.569093 | 3_2:+55533605 | None:intergenic |
| GGTTCCATAGAAGAGACTAA+TGG | 0.569947 | 3_2:-55536226 | Msa0412250:CDS |
| TCATTTCCCGGTTCAAGGAG+AGG | 0.571549 | 3_2:-55533698 | Msa0412250:CDS |
| ATGTTTCAATATGGCCAACA+AGG | 0.571618 | 3_2:-55532769 | Msa0412250:CDS |
| TAAGCCAAATAATCACTAAG+TGG | 0.573231 | 3_2:-55532685 | Msa0412250:CDS |
| AGCGTATCCACGAGTACAAG+AGG | 0.573947 | 3_2:-55532389 | Msa0412250:CDS |
| GGATGAAGAAGGGCTTGGAT+GGG | 0.574485 | 3_2:-55533571 | Msa0412250:CDS |
| CACTTAATTTACCTGCTTGG+GGG | 0.574585 | 3_2:-55534730 | Msa0412250:CDS |
| ACCTGTCAGTAAGTCAAGAT+CGG | 0.576769 | 3_2:+55532640 | None:intergenic |
| AATGATAAGTAAAACCCGAC+TGG | 0.577293 | 3_2:-55533169 | Msa0412250:CDS |
| AGGTAAATTAAGTGTTGCCA+TGG | 0.577786 | 3_2:+55534739 | None:intergenic |
| CGGTTCAAGGAGAGGAGGCA+GGG | 0.579612 | 3_2:-55533690 | Msa0412250:CDS |
| CATTAGGGTTAACCTCGACC+TGG | 0.581641 | 3_2:+55534471 | None:intergenic |
| AATTGTACAGCAACCTTCGT+CGG | 0.581739 | 3_2:+55533645 | None:intergenic |
| TCTGTTTAAATAGTCCGTAC+CGG | 0.582859 | 3_2:+55534693 | None:intergenic |
| AGGTCAGGAGGAAGTTGCTG+AGG | 0.588335 | 3_2:-55534657 | Msa0412250:CDS |
| ATTTCCAATAGCATTGGTCA+AGG | 0.590725 | 3_2:+55535097 | None:intergenic |
| CCAGAAGCCAGTTGTTCGGA+TGG | 0.591835 | 3_2:-55533100 | Msa0412250:CDS |
| AGTGAGGACTATACTGAGCA+TGG | 0.592114 | 3_2:+55536113 | None:intergenic |
| AATCGCAAAAGAAGGTCAGG+AGG | 0.592795 | 3_2:-55534669 | Msa0412250:CDS |
| TCGTGCCTCACAATTTCCCA+AGG | 0.598830 | 3_2:+55534521 | None:intergenic |
| GGAAACTCGGACCAGTTCCA+AGG | 0.600518 | 3_2:+55533666 | None:intergenic |
| AGTTGCTGAGGACTGGCTCG+AGG | 0.600739 | 3_2:-55534645 | Msa0412250:intron |
| TTAGCCCTTGGGAAATTGTG+AGG | 0.601926 | 3_2:-55534526 | Msa0412250:CDS |
| TATCCTGGGGATGCCACAGA+AGG | 0.602412 | 3_2:-55533875 | Msa0412250:CDS |
| GTTTACTTATGGATGAAGAA+GGG | 0.604886 | 3_2:-55533581 | Msa0412250:CDS |
| CTGGTCCGAGTTTCCGACGA+AGG | 0.604965 | 3_2:-55533658 | Msa0412250:CDS |
| TTTGTGATAGGAGAAAGATA+AGG | 0.605342 | 3_2:-55536261 | Msa0412250:intron |
| AATGGTCTCAGTCTGTAATG+TGG | 0.608222 | 3_2:-55533339 | Msa0412250:CDS |
| ACACAGTGATATATTGAAGT+CGG | 0.612649 | 3_2:-55532807 | Msa0412250:CDS |
| TGGTATTGATAGGGTCGGGT+GGG | 0.615079 | 3_2:+55533614 | None:intergenic |
| CTTGGCACAGTACGTTCTGA+AGG | 0.618440 | 3_2:-55532460 | Msa0412250:CDS |
| TATGGTTTGAGGTACCGGTA+CGG | 0.619433 | 3_2:-55534707 | Msa0412250:CDS |
| CTGGTATTGATAGGGTCGGG+TGG | 0.620002 | 3_2:+55533613 | None:intergenic |
| TATGCCAGCCGAAAATGGAT+TGG | 0.620660 | 3_2:-55534333 | Msa0412250:intron |
| AGTACGTTCTGAAGGTGACA+GGG | 0.624712 | 3_2:-55532452 | Msa0412250:CDS |
| ATAGAAGAGACTAATGGTGG+TGG | 0.626585 | 3_2:-55536220 | Msa0412250:CDS |
| TGGATGGGATGAAGCATGGG+AGG | 0.633226 | 3_2:-55533556 | Msa0412250:CDS |
| ACCATTTCTCCAGTGCTTCG+GGG | 0.634093 | 3_2:+55533356 | None:intergenic |
| CCTGGCCAAAGAATCTGATA+GGG | 0.634245 | 3_2:+55534489 | None:intergenic |
| GATGCAGCACTAGGAAATGG+TGG | 0.643582 | 3_2:-55534794 | Msa0412250:CDS |
| TCGGATGGCAAATTTGTGTG+TGG | 0.644056 | 3_2:-55533085 | Msa0412250:CDS |
| GAATGTCAAATAGAGTATCA+GGG | 0.648034 | 3_2:+55532418 | None:intergenic |
| GTTCACTCTCAAGATCCAGT+CGG | 0.648340 | 3_2:+55533154 | None:intergenic |
| TCGAGGTTAACCCTAATGGA+AGG | 0.648776 | 3_2:-55534466 | Msa0412250:intron |
| TTTCCCGGTTCAAGGAGAGG+AGG | 0.656952 | 3_2:-55533695 | Msa0412250:CDS |
| ATTTCTCCAGTGCTTCGGGG+AGG | 0.665090 | 3_2:+55533359 | None:intergenic |
| CGTGCCTCACAATTTCCCAA+GGG | 0.676969 | 3_2:+55534522 | None:intergenic |
| TCCATAGAAGAGACTAATGG+TGG | 0.677254 | 3_2:-55536223 | Msa0412250:CDS |
| TCTATGATTTCCATGTGACG+AGG | 0.683452 | 3_2:+55533307 | None:intergenic |
| CACAAGCTTTAGCTTCCCAG+AGG | 0.688674 | 3_2:+55534235 | None:intergenic |
| AACTTGAAAGGCGAAAAGTG+AGG | 0.693705 | 3_2:+55536097 | None:intergenic |
| ATGAAGATCTGCAAGCAGAG+TGG | 0.702272 | 3_2:-55532512 | Msa0412250:CDS |
| CTTACTGACAGGTCTTCGAG+AGG | 0.704813 | 3_2:-55532630 | Msa0412250:intron |
| GTACGTTCTGAAGGTGACAG+GGG | 0.729253 | 3_2:-55532451 | Msa0412250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAACAATTTGATTAA+TGG | - | chr3_2:55532662-55532681 | Msa0412250:CDS | 10.0% |
| !! | TTTATAACAATTTGATTAAT+GGG | - | chr3_2:55532663-55532682 | Msa0412250:CDS | 10.0% |
| !!! | AAATTTTTAATTTTTTCTCT+TGG | - | chr3_2:55532693-55532712 | Msa0412250:CDS | 10.0% |
| !!! | AATTTTTAATTTTTTCTCTT+GGG | - | chr3_2:55532694-55532713 | Msa0412250:CDS | 10.0% |
| !! | AAGAAAGAGATTATTAAAAA+AGG | + | chr3_2:55532418-55532437 | None:intergenic | 15.0% |
| !!! | TTTTGTATTTTTTTCTTACT+TGG | - | chr3_2:55532587-55532606 | Msa0412250:intron | 15.0% |
| !! | AAAACATAAAAAATTAACAC+TGG | + | chr3_2:55532793-55532812 | None:intergenic | 15.0% |
| !!! | AATTTAAAGCTAATTAACTA+AGG | - | chr3_2:55533709-55533728 | Msa0412250:intron | 15.0% |
| !!! | ATTTAAAGCTAATTAACTAA+GGG | - | chr3_2:55533710-55533729 | Msa0412250:intron | 15.0% |
| !!! | ATATAAAAGTACTTATAGTT+TGG | - | chr3_2:55534716-55534735 | Msa0412250:CDS | 15.0% |
| !!! | GATTTATTTTTATTCAATGA+TGG | - | chr3_2:55534875-55534894 | Msa0412250:intron | 15.0% |
| !! | TTTCACAAATAATATAAAGA+GGG | + | chr3_2:55536180-55536199 | None:intergenic | 15.0% |
| !! | ATTTCACAAATAATATAAAG+AGG | + | chr3_2:55536181-55536200 | None:intergenic | 15.0% |
| !! | AAATTTATTTACTTCATGTT+GGG | - | chr3_2:55536213-55536232 | Msa0412250:CDS | 15.0% |
| !! | AAGTTGAATAATTGAAGAAA+TGG | + | chr3_2:55532443-55532462 | None:intergenic | 20.0% |
| !!! | TTTTCTGACAATTTGATTAA+TGG | - | chr3_2:55532551-55532570 | Msa0412250:intron | 20.0% |
| !! | TTTCTGACAATTTGATTAAT+GGG | - | chr3_2:55532552-55532571 | Msa0412250:intron | 20.0% |
| !!! | TTTATGTTTTGTTTTGTGAT+AGG | - | chr3_2:55532803-55532822 | Msa0412250:CDS | 20.0% |
| !! | AAAGATAAGGATTTGAAAAA+TGG | - | chr3_2:55532828-55532847 | Msa0412250:CDS | 20.0% |
| !! | AAGATAAGGATTTGAAAAAT+GGG | - | chr3_2:55532829-55532848 | Msa0412250:CDS | 20.0% |
| !! | TGTTATAGTTATAGCTATAA+TGG | - | chr3_2:55533214-55533233 | Msa0412250:intron | 20.0% |
| !! | AAAGAAGTAAAAAAGGTAAA+AGG | + | chr3_2:55533583-55533602 | None:intergenic | 20.0% |
| !!! | TTTGTTCTGAAATCTTATAA+TGG | + | chr3_2:55535055-55535074 | None:intergenic | 20.0% |
| !!! | ATTTGTTTTGTAGATTTGTT+CGG | - | chr3_2:55535173-55535192 | Msa0412250:CDS | 20.0% |
| !! | AAATAATATAAAGAGGGTTA+CGG | + | chr3_2:55536174-55536193 | None:intergenic | 20.0% |
| !! | GAAATTTATTTACTTCATGT+TGG | - | chr3_2:55536212-55536231 | Msa0412250:CDS | 20.0% |
| !! | TTGCAAATTATGTTTCAATA+TGG | - | chr3_2:55536298-55536317 | Msa0412250:intron | 20.0% |
| !!! | TAATGCCATTAGTTTTATTT+TGG | + | chr3_2:55536335-55536354 | None:intergenic | 20.0% |
| !! | CTATAGATATAAAAAGTTGA+AGG | - | chr3_2:55536736-55536755 | Msa0412250:five_prime_UTR | 20.0% |
| !! | TTTTGTGACAATTGGATTAA+TGG | - | chr3_2:55532766-55532785 | Msa0412250:CDS | 25.0% |
| ! | TTTGTGACAATTGGATTAAT+GGG | - | chr3_2:55532767-55532786 | Msa0412250:CDS | 25.0% |
| ! | TTGTACATTTACTCTGAATT+GGG | - | chr3_2:55533076-55533095 | Msa0412250:CDS | 25.0% |
| !!! | GTTTTTTATGAAAACATACC+AGG | + | chr3_2:55533259-55533278 | None:intergenic | 25.0% |
| ! | GTCACATAAAGAAGTAAAAA+AGG | + | chr3_2:55533590-55533609 | None:intergenic | 25.0% |
| ! | GATGATAATTATTTCAGCAA+TGG | - | chr3_2:55533877-55533896 | Msa0412250:CDS | 25.0% |
| ! | ATTCAAATTTCCAATAGCAT+TGG | + | chr3_2:55533988-55534007 | None:intergenic | 25.0% |
| !! | GAAGTGATTTGGATTTATAA+AGG | + | chr3_2:55534183-55534202 | None:intergenic | 25.0% |
| ! | AAATATGTCATACACTTTCA+TGG | + | chr3_2:55534486-55534505 | None:intergenic | 25.0% |
| !!! | AAAATAGTTTTACACTGCTT+TGG | - | chr3_2:55534661-55534680 | Msa0412250:CDS | 25.0% |
| ! | AGGATACAACAAAATTCAAT+AGG | + | chr3_2:55535079-55535098 | None:intergenic | 25.0% |
| ! | ATGTTTGATTCTTCTTTACA+GGG | + | chr3_2:55535122-55535141 | None:intergenic | 25.0% |
| ! | AATGTTTGATTCTTCTTTAC+AGG | + | chr3_2:55535123-55535142 | None:intergenic | 25.0% |
| ! | TTTAATATGAAACTGCTTCA+CGG | + | chr3_2:55535151-55535170 | None:intergenic | 25.0% |
| !! | AATCCAGAATTTAACTTACT+TGG | + | chr3_2:55535278-55535297 | None:intergenic | 25.0% |
| ! | AAGTTAAATTCTGGATTCAA+TGG | - | chr3_2:55535281-55535300 | Msa0412250:intron | 25.0% |
| ! | CAATCTAGAAAGAAAGAAAA+TGG | + | chr3_2:55535602-55535621 | None:intergenic | 25.0% |
| !!! | AGCATCATATTTTAGCAATA+AGG | + | chr3_2:55535657-55535676 | None:intergenic | 25.0% |
| ! | TTTCTCCAAATACACTTAAA+AGG | - | chr3_2:55536090-55536109 | Msa0412250:CDS | 25.0% |
| !!! | ATCAACCTTTTAAGTGTATT+TGG | + | chr3_2:55536098-55536117 | None:intergenic | 25.0% |
| ! | CAATATATCACTGTGTAATT+GGG | + | chr3_2:55536265-55536284 | None:intergenic | 25.0% |
| ! | TCAATATATCACTGTGTAAT+TGG | + | chr3_2:55536266-55536285 | None:intergenic | 25.0% |
| ! | AGGTTCCAAAATAAAACTAA+TGG | - | chr3_2:55536327-55536346 | Msa0412250:intron | 25.0% |
| ! | TTAACCACTTAGTGATTATT+TGG | + | chr3_2:55536398-55536417 | None:intergenic | 25.0% |
| ! | TGTTAGAATGTTTCAATAAC+AGG | + | chr3_2:55536506-55536525 | None:intergenic | 25.0% |
| GAAGAAGATATTTGAAGGAA+TGG | + | chr3_2:55532364-55532383 | None:intergenic | 30.0% | |
| TACGTGAAGAAGATATTTGA+AGG | + | chr3_2:55532369-55532388 | None:intergenic | 30.0% | |
| GGAAAAAGAGAATCTATGTT+TGG | + | chr3_2:55532397-55532416 | None:intergenic | 30.0% | |
| ! | GTTCAGATTTTTGTGACAAT+TGG | - | chr3_2:55532758-55532777 | Msa0412250:CDS | 30.0% |
| TTTGTGATAGGAGAAAGATA+AGG | - | chr3_2:55532815-55532834 | Msa0412250:CDS | 30.0% | |
| CTTGTACATTTACTCTGAAT+TGG | - | chr3_2:55533075-55533094 | Msa0412250:CDS | 30.0% | |
| TAATCATTTGTGAGAGTCAA+TGG | - | chr3_2:55533132-55533151 | Msa0412250:CDS | 30.0% | |
| GTTATAGCTATAATGGTCAT+TGG | - | chr3_2:55533221-55533240 | Msa0412250:intron | 30.0% | |
| CAGGATAGCTTATATGAATA+CGG | + | chr3_2:55533354-55533373 | None:intergenic | 30.0% | |
| ATCATACCAACAATTTGACT+TGG | - | chr3_2:55533528-55533547 | Msa0412250:intron | 30.0% | |
| CAACTTTAGTCACATTAACT+TGG | - | chr3_2:55533638-55533657 | Msa0412250:CDS | 30.0% | |
| CAATACAAGTATACTAACCT+AGG | + | chr3_2:55533821-55533840 | None:intergenic | 30.0% | |
| CTAGGTTAGTATACTTGTAT+TGG | - | chr3_2:55533819-55533838 | Msa0412250:intron | 30.0% | |
| !! | GTATACTTGTATTGGTTGTT+TGG | - | chr3_2:55533827-55533846 | Msa0412250:CDS | 30.0% |
| ! | GATAAGTAGTAAGTTTGCTT+GGG | + | chr3_2:55533936-55533955 | None:intergenic | 30.0% |
| ! | TGATAAGTAGTAAGTTTGCT+TGG | + | chr3_2:55533937-55533956 | None:intergenic | 30.0% |
| GCAAACTTACTACTTATCAA+TGG | - | chr3_2:55533938-55533957 | Msa0412250:intron | 30.0% | |
| TCCAAATCACTTCATATCTA+TGG | - | chr3_2:55534190-55534209 | Msa0412250:CDS | 30.0% | |
| ACCATAGATATGAAGTGATT+TGG | + | chr3_2:55534194-55534213 | None:intergenic | 30.0% | |
| !! | GTAATCGTGTTTTTATATGC+TGG | + | chr3_2:55534229-55534248 | None:intergenic | 30.0% |
| CTGCAAAGATTCATGTTAAA+AGG | + | chr3_2:55534256-55534275 | None:intergenic | 30.0% | |
| ! | CTTTTAACATGAATCTTTGC+AGG | - | chr3_2:55534254-55534273 | Msa0412250:CDS | 30.0% |
| AACACTTAATTTACCTGCTT+GGG | - | chr3_2:55534344-55534363 | Msa0412250:intron | 30.0% | |
| AAACAGATAATCGCAAAAGA+AGG | - | chr3_2:55534399-55534418 | Msa0412250:intron | 30.0% | |
| TTTACACTTACCTTCCATTA+GGG | + | chr3_2:55534623-55534642 | None:intergenic | 30.0% | |
| ATTTACACTTACCTTCCATT+AGG | + | chr3_2:55534624-55534643 | None:intergenic | 30.0% | |
| ! | GTGAATTTTGAATCTTGTTC+AGG | - | chr3_2:55534951-55534970 | Msa0412250:intron | 30.0% |
| ACTCCAAGTAAGTTAAATTC+TGG | - | chr3_2:55535272-55535291 | Msa0412250:intron | 30.0% | |
| GTTTACTTATGGATGAAGAA+GGG | - | chr3_2:55535495-55535514 | Msa0412250:intron | 30.0% | |
| TATGATGCTATATCTTAACC+AGG | - | chr3_2:55535668-55535687 | Msa0412250:intron | 30.0% | |
| GAGTTTATTGAAGAGAAACA+AGG | + | chr3_2:55535828-55535847 | None:intergenic | 30.0% | |
| TCTTCAATAAACTCAGTGAA+AGG | - | chr3_2:55535834-55535853 | Msa0412250:intron | 30.0% | |
| AGTGTATTTGGAGAAATTAG+AGG | + | chr3_2:55536086-55536105 | None:intergenic | 30.0% | |
| TCAACCATGAAAAAACTAGA+TGG | + | chr3_2:55536139-55536158 | None:intergenic | 30.0% | |
| ACACAGTGATATATTGAAGT+CGG | - | chr3_2:55536269-55536288 | Msa0412250:intron | 30.0% | |
| !!! | GTTTTATTTTGGAACCTTGT+TGG | + | chr3_2:55536324-55536343 | None:intergenic | 30.0% |
| TAAGCCAAATAATCACTAAG+TGG | - | chr3_2:55536391-55536410 | Msa0412250:intron | 30.0% | |
| AGTGGTTAAAAACTGATAAG+TGG | - | chr3_2:55536409-55536428 | Msa0412250:intron | 30.0% | |
| GTGGTTAAAAACTGATAAGT+GGG | - | chr3_2:55536410-55536429 | Msa0412250:intron | 30.0% | |
| ! | GAATGTCAAATAGAGTATCA+GGG | + | chr3_2:55536661-55536680 | None:intergenic | 30.0% |
| ! | TGAATGTCAAATAGAGTATC+AGG | + | chr3_2:55536662-55536681 | None:intergenic | 30.0% |
| TTTGAAGGAATGGTATTGCT+AGG | + | chr3_2:55532354-55532373 | None:intergenic | 35.0% | |
| !! | TTTTTCTCTTGGGTTGCTTT+TGG | - | chr3_2:55532704-55532723 | Msa0412250:CDS | 35.0% |
| !!! | TTTTCTCTTGGGTTGCTTTT+GGG | - | chr3_2:55532705-55532724 | Msa0412250:CDS | 35.0% |
| ATGTTAGAAGCAATCTCATC+AGG | + | chr3_2:55532937-55532956 | None:intergenic | 35.0% | |
| TGTTCAAGCTCAAACTTGAA+AGG | + | chr3_2:55532994-55533013 | None:intergenic | 35.0% | |
| !! | TATAAGTGCACTTTTGCTGT+AGG | - | chr3_2:55533168-55533187 | Msa0412250:CDS | 35.0% |
| CGTATTCATATAAGCTATCC+TGG | - | chr3_2:55533352-55533371 | Msa0412250:CDS | 35.0% | |
| !!! | CAAGTTGCGATTCGTTTTTT+AGG | - | chr3_2:55533668-55533687 | Msa0412250:CDS | 35.0% |
| TAGGACTTAAATCAAATGCG+AGG | + | chr3_2:55533802-55533821 | None:intergenic | 35.0% | |
| ! | TCGCATTTGATTTAAGTCCT+AGG | - | chr3_2:55533801-55533820 | Msa0412250:intron | 35.0% |
| !! | CTTGTATTGGTTGTTTGGAT+AGG | - | chr3_2:55533832-55533851 | Msa0412250:CDS | 35.0% |
| TTATCAATGGAGTTCCTTCA+AGG | - | chr3_2:55533951-55533970 | Msa0412250:intron | 35.0% | |
| !! | ATTTCCAATAGCATTGGTCA+AGG | + | chr3_2:55533982-55534001 | None:intergenic | 35.0% |
| ! | GCAACTTTTTATTACCTGCT+CGG | + | chr3_2:55534069-55534088 | None:intergenic | 35.0% |
| CAATCTCTCTTCTTTAGTAC+TGG | - | chr3_2:55534099-55534118 | Msa0412250:intron | 35.0% | |
| ACATGAATCTTTGCAGGAAA+AGG | - | chr3_2:55534260-55534279 | Msa0412250:CDS | 35.0% | |
| ! | AGGTAAATTAAGTGTTGCCA+TGG | + | chr3_2:55534340-55534359 | None:intergenic | 35.0% |
| CAACACTTAATTTACCTGCT+TGG | - | chr3_2:55534343-55534362 | Msa0412250:intron | 35.0% | |
| ACACTTAATTTACCTGCTTG+GGG | - | chr3_2:55534345-55534364 | Msa0412250:intron | 35.0% | |
| TCTGTTTAAATAGTCCGTAC+CGG | + | chr3_2:55534386-55534405 | None:intergenic | 35.0% | |
| TTGTACCCTATCAGATTCTT+TGG | - | chr3_2:55534582-55534601 | Msa0412250:intron | 35.0% | |
| ! | TTTTACACTGCTTTGGTACA+TGG | - | chr3_2:55534668-55534687 | Msa0412250:CDS | 35.0% |
| CATGATCTTTGACAATGAAC+TGG | + | chr3_2:55534982-55535001 | None:intergenic | 35.0% | |
| AGAGGTGATAATCATGATTG+AGG | + | chr3_2:55535099-55535118 | None:intergenic | 35.0% | |
| !! | ATTTGTTCGGTTTTGTATCC+TGG | - | chr3_2:55535186-55535205 | Msa0412250:intron | 35.0% |
| !! | TTTGTTCGGTTTTGTATCCT+GGG | - | chr3_2:55535187-55535206 | Msa0412250:intron | 35.0% |
| AATTACAGGACATCATTTCC+CGG | - | chr3_2:55535366-55535385 | Msa0412250:intron | 35.0% | |
| !! | CATCAACTCTGGTATTGATA+GGG | + | chr3_2:55535474-55535493 | None:intergenic | 35.0% |
| ATAAGTAAACGCATCAACTC+TGG | + | chr3_2:55535485-55535504 | None:intergenic | 35.0% | |
| !! | AGAGTTGATGCGTTTACTTA+TGG | - | chr3_2:55535484-55535503 | Msa0412250:intron | 35.0% |
| CGTTTACTTATGGATGAAGA+AGG | - | chr3_2:55535494-55535513 | Msa0412250:intron | 35.0% | |
| ATTAGTGTAAGCAATTGTCC+TGG | + | chr3_2:55535689-55535708 | None:intergenic | 35.0% | |
| TATCATTGTAGTGAACTGCA+TGG | + | chr3_2:55535894-55535913 | None:intergenic | 35.0% | |
| AATGATAAGTAAAACCCGAC+TGG | - | chr3_2:55535907-55535926 | Msa0412250:intron | 35.0% | |
| AAGACATCAATAGGGTAAGA+TGG | + | chr3_2:55536059-55536078 | None:intergenic | 35.0% | |
| GAGGATAGAAGACATCAATA+GGG | + | chr3_2:55536067-55536086 | None:intergenic | 35.0% | |
| AGAGGATAGAAGACATCAAT+AGG | + | chr3_2:55536068-55536087 | None:intergenic | 35.0% | |
| !!! | GACACCATCTAGTTTTTTCA+TGG | - | chr3_2:55536132-55536151 | Msa0412250:CDS | 35.0% |
| CTCCATTCACCTATAATAGA+TGG | + | chr3_2:55536239-55536258 | None:intergenic | 35.0% | |
| ATGTTTCAATATGGCCAACA+AGG | - | chr3_2:55536307-55536326 | Msa0412250:intron | 35.0% | |
| CAAAAATTGATCCATCTTCG+AGG | + | chr3_2:55536360-55536379 | None:intergenic | 35.0% | |
| ACATTCTAACATTTGATCCC+TGG | - | chr3_2:55536515-55536534 | Msa0412250:intron | 35.0% | |
| !!! | ACTGCTACTTTTCTCTCAAC+TGG | - | chr3_2:55532472-55532491 | Msa0412250:CDS | 40.0% |
| !!! | CTGCTACTTTTCTCTCAACT+GGG | - | chr3_2:55532473-55532492 | Msa0412250:CDS | 40.0% |
| GGTTCCATAGAAGAGACTAA+TGG | - | chr3_2:55532850-55532869 | Msa0412250:intron | 40.0% | |
| TCCATAGAAGAGACTAATGG+TGG | - | chr3_2:55532853-55532872 | Msa0412250:intron | 40.0% | |
| ! | ACCACCATTAGTCTCTTCTA+TGG | + | chr3_2:55532857-55532876 | None:intergenic | 40.0% |
| ATAGAAGAGACTAATGGTGG+TGG | - | chr3_2:55532856-55532875 | Msa0412250:intron | 40.0% | |
| !! | TCATCAGGTTTTTCAGCCAA+TGG | + | chr3_2:55532922-55532941 | None:intergenic | 40.0% |
| AACTTGAAAGGCGAAAAGTG+AGG | + | chr3_2:55532982-55533001 | None:intergenic | 40.0% | |
| !!! | CATTGGTGATGTTTTTGACC+TGG | - | chr3_2:55533238-55533257 | Msa0412250:intron | 40.0% |
| CTTATTTCCATAAGCTCTCC+AGG | + | chr3_2:55533373-55533392 | None:intergenic | 40.0% | |
| AACTTGATCCTACAGCTTTC+TGG | + | chr3_2:55533463-55533482 | None:intergenic | 40.0% | |
| TTTGTACGACAGAAAGCTGT+AGG | - | chr3_2:55533501-55533520 | Msa0412250:intron | 40.0% | |
| CAGCAACCAAGTCAAATTGT+TGG | + | chr3_2:55533537-55533556 | None:intergenic | 40.0% | |
| ACTTGAAGAAATAACCGAGC+AGG | - | chr3_2:55534052-55534071 | Msa0412250:intron | 40.0% | |
| GAAGCTTTCATTATGAGCGA+TGG | + | chr3_2:55534161-55534180 | None:intergenic | 40.0% | |
| TTCTTGCTTTCTGGATTCCA+TGG | - | chr3_2:55534320-55534339 | Msa0412250:CDS | 40.0% | |
| CACTTAATTTACCTGCTTGG+GGG | - | chr3_2:55534346-55534365 | Msa0412250:intron | 40.0% | |
| GATAATCGCAAAAGAAGGTC+AGG | - | chr3_2:55534404-55534423 | Msa0412250:intron | 40.0% | |
| CAAACAGAAGTTTAGCCCTT+GGG | - | chr3_2:55534539-55534558 | Msa0412250:intron | 40.0% | |
| !! | TTGGTTTGGTATCCAGGAAT+TGG | + | chr3_2:55534803-55534822 | None:intergenic | 40.0% |
| TGATTCTTCTTTACAGGGAG+AGG | + | chr3_2:55535117-55535136 | None:intergenic | 40.0% | |
| !! | TTGTTCGGTTTTGTATCCTG+GGG | - | chr3_2:55535188-55535207 | Msa0412250:intron | 40.0% |
| ! | TAGAAGTTTTCCACCTTCTG+TGG | + | chr3_2:55535217-55535236 | None:intergenic | 40.0% |
| CAGAAGGTGGAAAACTTCTA+CGG | - | chr3_2:55535217-55535236 | Msa0412250:intron | 40.0% | |
| AAATTCTGGATTCAATGGCG+TGG | - | chr3_2:55535286-55535305 | Msa0412250:intron | 40.0% | |
| TCTCACCTTCAACCAATTAC+AGG | - | chr3_2:55535352-55535371 | Msa0412250:intron | 40.0% | |
| GATGTCCTGTAATTGGTTGA+AGG | + | chr3_2:55535360-55535379 | None:intergenic | 40.0% | |
| GGGAAATGATGTCCTGTAAT+TGG | + | chr3_2:55535367-55535386 | None:intergenic | 40.0% | |
| AATTGTACAGCAACCTTCGT+CGG | + | chr3_2:55535434-55535453 | None:intergenic | 40.0% | |
| !! | AACTCTGGTATTGATAGGGT+CGG | + | chr3_2:55535470-55535489 | None:intergenic | 40.0% |
| !! | GCATCAACTCTGGTATTGAT+AGG | + | chr3_2:55535475-55535494 | None:intergenic | 40.0% |
| AATGGTCTCAGTCTGTAATG+TGG | - | chr3_2:55535737-55535756 | Msa0412250:intron | 40.0% | |
| TCTATGATTTCCATGTGACG+AGG | + | chr3_2:55535772-55535791 | None:intergenic | 40.0% | |
| ! | ACTTTCCAACATGCGCATTT+TGG | - | chr3_2:55535943-55535962 | Msa0412250:intron | 40.0% |
| ATTGTCCAAAATGCGCATGT+TGG | + | chr3_2:55535951-55535970 | None:intergenic | 40.0% | |
| AAATTTGCCATCCGAACAAC+TGG | + | chr3_2:55535986-55536005 | None:intergenic | 40.0% | |
| CATGTTGGGCCATCTATTAT+AGG | - | chr3_2:55536227-55536246 | Msa0412250:CDS | 40.0% | |
| GGCCATCTATTATAGGTGAA+TGG | - | chr3_2:55536234-55536253 | Msa0412250:exon | 40.0% | |
| ! | GTGATTATTTGGCTTAGCTC+AGG | + | chr3_2:55536387-55536406 | None:intergenic | 40.0% |
| ACCTGTCAGTAAGTCAAGAT+CGG | + | chr3_2:55536439-55536458 | None:intergenic | 40.0% | |
| TTCATTGTCAGCAAACTGCA+GGG | + | chr3_2:55536549-55536568 | None:intergenic | 40.0% | |
| TCCTGCTGTTGCAAATCCAT+TGG | - | chr3_2:55532903-55532922 | Msa0412250:intron | 45.0% | |
| AGTGAGGACTATACTGAGCA+TGG | + | chr3_2:55532966-55532985 | None:intergenic | 45.0% | |
| AAGCTATCCTGGAGAGCTTA+TGG | - | chr3_2:55533363-55533382 | Msa0412250:CDS | 45.0% | |
| AGACAGTTTGGGAGAGCTTA+TGG | + | chr3_2:55533430-55533449 | None:intergenic | 45.0% | |
| GCGTACTTGTGAGACAGTTT+GGG | + | chr3_2:55533441-55533460 | None:intergenic | 45.0% | |
| AAGGATGCAGCACTAGGAAA+TGG | - | chr3_2:55534279-55534298 | Msa0412250:CDS | 45.0% | |
| ! | TAGGAAATGGTGGTCTTGGT+CGG | - | chr3_2:55534292-55534311 | Msa0412250:CDS | 45.0% |
| AATTTACCTGCTTGGGGGTA+TGG | - | chr3_2:55534351-55534370 | Msa0412250:intron | 45.0% | |
| !! | TATGGTTTGAGGTACCGGTA+CGG | - | chr3_2:55534369-55534388 | Msa0412250:intron | 45.0% |
| AATCGCAAAAGAAGGTCAGG+AGG | - | chr3_2:55534407-55534426 | Msa0412250:intron | 45.0% | |
| CCAAGGGCTAAACTTCTGTT+TGG | + | chr3_2:55534541-55534560 | None:intergenic | 45.0% | |
| CCAAACAGAAGTTTAGCCCT+TGG | - | chr3_2:55534538-55534557 | Msa0412250:intron | 45.0% | |
| TTAGCCCTTGGGAAATTGTG+AGG | - | chr3_2:55534550-55534569 | Msa0412250:intron | 45.0% | |
| CCTGGCCAAAGAATCTGATA+GGG | + | chr3_2:55534590-55534609 | None:intergenic | 45.0% | |
| ACCTGGCCAAAGAATCTGAT+AGG | + | chr3_2:55534591-55534610 | None:intergenic | 45.0% | |
| TCGAGGTTAACCCTAATGGA+AGG | - | chr3_2:55534610-55534629 | Msa0412250:intron | 45.0% | |
| TATGCCAGCCGAAAATGGAT+TGG | - | chr3_2:55534743-55534762 | Msa0412250:CDS | 45.0% | |
| ! | CTTCTCCGCCAATCCATTTT+CGG | + | chr3_2:55534754-55534773 | None:intergenic | 45.0% |
| GCTTATGATGTGCCAATTCC+TGG | - | chr3_2:55534788-55534807 | Msa0412250:CDS | 45.0% | |
| !! | GTGTTCTTGGTTTGGTATCC+AGG | + | chr3_2:55534809-55534828 | None:intergenic | 45.0% |
| ! | GACTGATGGTGTTCTTGGTT+TGG | + | chr3_2:55534817-55534836 | None:intergenic | 45.0% |
| !! | ACTCTGGTATTGATAGGGTC+GGG | + | chr3_2:55535469-55535488 | None:intergenic | 45.0% |
| CTTATGGATGAAGAAGGGCT+TGG | - | chr3_2:55535500-55535519 | Msa0412250:intron | 45.0% | |
| AGACCATTTCTCCAGTGCTT+CGG | + | chr3_2:55535725-55535744 | None:intergenic | 45.0% | |
| GAAATTGCTTCCTCGTCACA+TGG | - | chr3_2:55535759-55535778 | Msa0412250:intron | 45.0% | |
| TTCACTCTCAAGATCCAGTC+GGG | + | chr3_2:55535924-55535943 | None:intergenic | 45.0% | |
| GTTCACTCTCAAGATCCAGT+CGG | + | chr3_2:55535925-55535944 | None:intergenic | 45.0% | |
| TCGGATGGCAAATTTGTGTG+TGG | - | chr3_2:55535991-55536010 | Msa0412250:intron | 45.0% | |
| ATGGCATTACACCTCGAAGA+TGG | - | chr3_2:55536346-55536365 | Msa0412250:intron | 45.0% | |
| ACCGATCTTGACTTACTGAC+AGG | - | chr3_2:55536435-55536454 | Msa0412250:intron | 45.0% | |
| !! | GTTGCATGTAGAGAAGCATC+CGG | + | chr3_2:55536478-55536497 | None:intergenic | 45.0% |
| ACTGCAGGGAAAAAACACCA+GGG | + | chr3_2:55536535-55536554 | None:intergenic | 45.0% | |
| AACTGCAGGGAAAAAACACC+AGG | + | chr3_2:55536536-55536555 | None:intergenic | 45.0% | |
| CTTCATTGTCAGCAAACTGC+AGG | + | chr3_2:55536550-55536569 | None:intergenic | 45.0% | |
| ATGAAGATCTGCAAGCAGAG+TGG | - | chr3_2:55536564-55536583 | Msa0412250:intron | 45.0% | |
| !! | AGTACGTTCTGAAGGTGACA+GGG | - | chr3_2:55536624-55536643 | Msa0412250:intron | 45.0% |
| !! | GAAGAGACTAATGGTGGTGG+TGG | - | chr3_2:55532859-55532878 | Msa0412250:intron | 50.0% |
| ! | GCCAATGGATTTGCAACAGC+AGG | + | chr3_2:55532907-55532926 | None:intergenic | 50.0% |
| TGTTCGTGATCGTCTCGTTC+AGG | - | chr3_2:55533038-55533057 | Msa0412250:intron | 50.0% | |
| GGCGTACTTGTGAGACAGTT+TGG | + | chr3_2:55533442-55533461 | None:intergenic | 50.0% | |
| CAAGTACGCCAGAAAGCTGT+AGG | - | chr3_2:55533452-55533471 | Msa0412250:intron | 50.0% | |
| CGAGCCTTGACCAATGCTAT+TGG | - | chr3_2:55533975-55533994 | Msa0412250:intron | 50.0% | |
| GCTGATGCTTTGCGCAAGTT+CGG | - | chr3_2:55534023-55534042 | Msa0412250:intron | 50.0% | |
| CAGGAAAAGGATGCAGCACT+AGG | - | chr3_2:55534273-55534292 | Msa0412250:CDS | 50.0% | |
| GATGCAGCACTAGGAAATGG+TGG | - | chr3_2:55534282-55534301 | Msa0412250:CDS | 50.0% | |
| GCACTAGGAAATGGTGGTCT+TGG | - | chr3_2:55534288-55534307 | Msa0412250:CDS | 50.0% | |
| ! | TCGGCTTGCTTCTTGCTTTC+TGG | - | chr3_2:55534311-55534330 | Msa0412250:CDS | 50.0% |
| CGTGCCTCACAATTTCCCAA+GGG | + | chr3_2:55534557-55534576 | None:intergenic | 50.0% | |
| TCGTGCCTCACAATTTCCCA+AGG | + | chr3_2:55534558-55534577 | None:intergenic | 50.0% | |
| CCCTATCAGATTCTTTGGCC+AGG | - | chr3_2:55534587-55534606 | Msa0412250:intron | 50.0% | |
| CATTAGGGTTAACCTCGACC+TGG | + | chr3_2:55534608-55534627 | None:intergenic | 50.0% | |
| CAGGTCGAGGTTAACCCTAA+TGG | - | chr3_2:55534606-55534625 | Msa0412250:intron | 50.0% | |
| GTGTGTATGCCAGCCGAAAA+TGG | - | chr3_2:55534738-55534757 | Msa0412250:CDS | 50.0% | |
| ! | GCGAAGACTGATGGTGTTCT+TGG | + | chr3_2:55534822-55534841 | None:intergenic | 50.0% |
| ! | CACAAGCTTTAGCTTCCCAG+AGG | + | chr3_2:55534844-55534863 | None:intergenic | 50.0% |
| GGACATCATTTCCCGGTTCA+AGG | - | chr3_2:55535373-55535392 | Msa0412250:intron | 50.0% | |
| TCATTTCCCGGTTCAAGGAG+AGG | - | chr3_2:55535378-55535397 | Msa0412250:intron | 50.0% | |
| AGCAACCTTCGTCGGAAACT+CGG | + | chr3_2:55535426-55535445 | None:intergenic | 50.0% | |
| !! | TGGTATTGATAGGGTCGGGT+GGG | + | chr3_2:55535465-55535484 | None:intergenic | 50.0% |
| TGGATGAAGAAGGGCTTGGA+TGG | - | chr3_2:55535504-55535523 | Msa0412250:intron | 50.0% | |
| GGATGAAGAAGGGCTTGGAT+GGG | - | chr3_2:55535505-55535524 | Msa0412250:intron | 50.0% | |
| GCTTGGATGGGATGAAGCAT+GGG | - | chr3_2:55535517-55535536 | Msa0412250:intron | 50.0% | |
| !! | GCAGAACTTGTTGCGTTGTG+TGG | - | chr3_2:55535564-55535583 | Msa0412250:intron | 50.0% |
| ACCATTTCTCCAGTGCTTCG+GGG | + | chr3_2:55535723-55535742 | None:intergenic | 50.0% | |
| GACCATTTCTCCAGTGCTTC+GGG | + | chr3_2:55535724-55535743 | None:intergenic | 50.0% | |
| ATCCCCAGAAGCCAGTTGTT+CGG | - | chr3_2:55535972-55535991 | Msa0412250:intron | 50.0% | |
| ! | ATCCGAACAACTGGCTTCTG+GGG | + | chr3_2:55535977-55535996 | None:intergenic | 50.0% |
| ! | CATCCGAACAACTGGCTTCT+GGG | + | chr3_2:55535978-55535997 | None:intergenic | 50.0% |
| CTTACTGACAGGTCTTCGAG+AGG | - | chr3_2:55536446-55536465 | Msa0412250:intron | 50.0% | |
| AGAGTGGTCGTCTGCAAAGA+TGG | - | chr3_2:55536580-55536599 | Msa0412250:intron | 50.0% | |
| GATGGCTAATAAGCAGCGCT+TGG | - | chr3_2:55536598-55536617 | Msa0412250:intron | 50.0% | |
| CTTGGCACAGTACGTTCTGA+AGG | - | chr3_2:55536616-55536635 | Msa0412250:intron | 50.0% | |
| !! | CAGTACGTTCTGAAGGTGAC+AGG | - | chr3_2:55536623-55536642 | Msa0412250:intron | 50.0% |
| !! | GTACGTTCTGAAGGTGACAG+GGG | - | chr3_2:55536625-55536644 | Msa0412250:intron | 50.0% |
| AGCGTATCCACGAGTACAAG+AGG | - | chr3_2:55536687-55536706 | Msa0412250:intron | 50.0% | |
| TGGTCAAGGCTCGACCTTGA+AGG | + | chr3_2:55533968-55533987 | None:intergenic | 55.0% | |
| CTCAAACCATACCCCCAAGC+AGG | + | chr3_2:55534360-55534379 | None:intergenic | 55.0% | |
| ! | CTGCTTGGGGGTATGGTTTG+AGG | - | chr3_2:55534358-55534377 | Msa0412250:intron | 55.0% |
| ! | GGGGGTATGGTTTGAGGTAC+CGG | - | chr3_2:55534364-55534383 | Msa0412250:intron | 55.0% |
| AGGTCAGGAGGAAGTTGCTG+AGG | - | chr3_2:55534419-55534438 | Msa0412250:intron | 55.0% | |
| AGGAGGAAGTTGCTGAGGAC+TGG | - | chr3_2:55534424-55534443 | Msa0412250:intron | 55.0% | |
| CAGATTCTTTGGCCAGGTCG+AGG | - | chr3_2:55534593-55534612 | Msa0412250:intron | 55.0% | |
| !! | GCCAGCCGAAAATGGATTGG+CGG | - | chr3_2:55534746-55534765 | Msa0412250:CDS | 55.0% |
| ! | TCCGCCAATCCATTTTCGGC+TGG | + | chr3_2:55534750-55534769 | None:intergenic | 55.0% |
| ACACCATCAGTCTTCGCCTC+TGG | - | chr3_2:55534825-55534844 | Msa0412250:intron | 55.0% | |
| CACCATCAGTCTTCGCCTCT+GGG | - | chr3_2:55534826-55534845 | Msa0412250:intron | 55.0% | |
| TTCCCAGAGGCGAAGACTGA+TGG | + | chr3_2:55534831-55534850 | None:intergenic | 55.0% | |
| GCTTCACTCACGAGCTCAAC+AGG | - | chr3_2:55534919-55534938 | Msa0412250:intron | 55.0% | |
| TATCCTGGGGATGCCACAGA+AGG | - | chr3_2:55535201-55535220 | Msa0412250:intron | 55.0% | |
| TTTCCCGGTTCAAGGAGAGG+AGG | - | chr3_2:55535381-55535400 | Msa0412250:intron | 55.0% | |
| GGAAACTCGGACCAGTTCCA+AGG | + | chr3_2:55535413-55535432 | None:intergenic | 55.0% | |
| !! | CTGGTATTGATAGGGTCGGG+TGG | + | chr3_2:55535466-55535485 | None:intergenic | 55.0% |
| GGCTTGGATGGGATGAAGCA+TGG | - | chr3_2:55535516-55535535 | Msa0412250:intron | 55.0% | |
| TGGATGGGATGAAGCATGGG+AGG | - | chr3_2:55535520-55535539 | Msa0412250:intron | 55.0% | |
| ATTTCTCCAGTGCTTCGGGG+AGG | + | chr3_2:55535720-55535739 | None:intergenic | 55.0% | |
| !! | TCCCCGAAGCACTGGAGAAA+TGG | - | chr3_2:55535719-55535738 | Msa0412250:intron | 55.0% |
| ! | CCATCCGAACAACTGGCTTC+TGG | + | chr3_2:55535979-55535998 | None:intergenic | 55.0% |
| CCAGAAGCCAGTTGTTCGGA+TGG | - | chr3_2:55535976-55535995 | Msa0412250:intron | 55.0% | |
| GGTCTTCGAGAGGTGAGTAC+CGG | - | chr3_2:55536456-55536475 | Msa0412250:intron | 55.0% | |
| GTAGCTGCCTCTTGTACTCG+TGG | + | chr3_2:55536697-55536716 | None:intergenic | 55.0% | |
| !! | AGTTGCTGAGGACTGGCTCG+AGG | - | chr3_2:55534431-55534450 | Msa0412250:intron | 60.0% |
| CTGCCTCCTCTCCTTGAACC+GGG | + | chr3_2:55535387-55535406 | None:intergenic | 60.0% | |
| CCTGCCTCCTCTCCTTGAAC+CGG | + | chr3_2:55535388-55535407 | None:intergenic | 60.0% | |
| CGGTTCAAGGAGAGGAGGCA+GGG | - | chr3_2:55535386-55535405 | Msa0412250:intron | 60.0% | |
| CTGGTCCGAGTTTCCGACGA+AGG | - | chr3_2:55535418-55535437 | Msa0412250:intron | 60.0% | |
| CCACCTTCTGTGGCATCCCC+AGG | + | chr3_2:55535207-55535226 | None:intergenic | 65.0% | |
| CCTGGGGATGCCACAGAAGG+TGG | - | chr3_2:55535204-55535223 | Msa0412250:intron | 65.0% | |
| CCGGTTCAAGGAGAGGAGGC+AGG | - | chr3_2:55535385-55535404 | Msa0412250:intron | 65.0% | |
| AGGAGAGGAGGCAGGGACCT+TGG | - | chr3_2:55535393-55535412 | Msa0412250:intron | 65.0% | |
| GGAGGCAGGGACCTTGGAAC+TGG | - | chr3_2:55535399-55535418 | Msa0412250:intron | 65.0% | |
| CACTGTCCTCCCCGAAGCAC+TGG | - | chr3_2:55535711-55535730 | Msa0412250:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 55532335 | 55536763 | 55532335 | ID=Msa0412250;Name=Msa0412250 |
| chr3_2 | mRNA | 55532335 | 55536763 | 55532335 | ID=Msa0412250-mRNA-1;Parent=Msa0412250;Name=Msa0412250-mRNA-1;_AED=0.07;_eAED=0.07;_QI=73|1|0.91|1|0.90|0.83|12|0|597 |
| chr3_2 | exon | 55532335 | 55532544 | 55532335 | ID=Msa0412250-mRNA-1:exon:11296;Parent=Msa0412250-mRNA-1 |
| chr3_2 | exon | 55532631 | 55532849 | 55532631 | ID=Msa0412250-mRNA-1:exon:11295;Parent=Msa0412250-mRNA-1 |
| chr3_2 | exon | 55533071 | 55533199 | 55533071 | ID=Msa0412250-mRNA-1:exon:11294;Parent=Msa0412250-mRNA-1 |
| chr3_2 | exon | 55533291 | 55533408 | 55533291 | ID=Msa0412250-mRNA-1:exon:11293;Parent=Msa0412250-mRNA-1 |
| chr3_2 | exon | 55533546 | 55533724 | 55533546 | ID=Msa0412250-mRNA-1:exon:11292;Parent=Msa0412250-mRNA-1 |
| chr3_2 | exon | 55533820 | 55533912 | 55533820 | ID=Msa0412250-mRNA-1:exon:11291;Parent=Msa0412250-mRNA-1 |
| chr3_2 | exon | 55534158 | 55534347 | 55534158 | ID=Msa0412250-mRNA-1:exon:11290;Parent=Msa0412250-mRNA-1 |
| chr3_2 | exon | 55534467 | 55534552 | 55534467 | ID=Msa0412250-mRNA-1:exon:11289;Parent=Msa0412250-mRNA-1 |
| chr3_2 | exon | 55534646 | 55534822 | 55534646 | ID=Msa0412250-mRNA-1:exon:11288;Parent=Msa0412250-mRNA-1 |
| chr3_2 | exon | 55535025 | 55535204 | 55535025 | ID=Msa0412250-mRNA-1:exon:11287;Parent=Msa0412250-mRNA-1 |
| chr3_2 | exon | 55536039 | 55536273 | 55536039 | ID=Msa0412250-mRNA-1:exon:11286;Parent=Msa0412250-mRNA-1 |
| chr3_2 | exon | 55536713 | 55536763 | 55536713 | ID=Msa0412250-mRNA-1:exon:11285;Parent=Msa0412250-mRNA-1 |
| chr3_2 | five_prime_UTR | 55536713 | 55536763 | 55536713 | ID=Msa0412250-mRNA-1:five_prime_utr;Parent=Msa0412250-mRNA-1 |
| chr3_2 | five_prime_UTR | 55536252 | 55536273 | 55536252 | ID=Msa0412250-mRNA-1:five_prime_utr;Parent=Msa0412250-mRNA-1 |
| chr3_2 | CDS | 55536039 | 55536251 | 55536039 | ID=Msa0412250-mRNA-1:cds;Parent=Msa0412250-mRNA-1 |
| chr3_2 | CDS | 55535025 | 55535204 | 55535025 | ID=Msa0412250-mRNA-1:cds;Parent=Msa0412250-mRNA-1 |
| chr3_2 | CDS | 55534646 | 55534822 | 55534646 | ID=Msa0412250-mRNA-1:cds;Parent=Msa0412250-mRNA-1 |
| chr3_2 | CDS | 55534467 | 55534552 | 55534467 | ID=Msa0412250-mRNA-1:cds;Parent=Msa0412250-mRNA-1 |
| chr3_2 | CDS | 55534158 | 55534347 | 55534158 | ID=Msa0412250-mRNA-1:cds;Parent=Msa0412250-mRNA-1 |
| chr3_2 | CDS | 55533820 | 55533912 | 55533820 | ID=Msa0412250-mRNA-1:cds;Parent=Msa0412250-mRNA-1 |
| chr3_2 | CDS | 55533546 | 55533724 | 55533546 | ID=Msa0412250-mRNA-1:cds;Parent=Msa0412250-mRNA-1 |
| chr3_2 | CDS | 55533291 | 55533408 | 55533291 | ID=Msa0412250-mRNA-1:cds;Parent=Msa0412250-mRNA-1 |
| chr3_2 | CDS | 55533071 | 55533199 | 55533071 | ID=Msa0412250-mRNA-1:cds;Parent=Msa0412250-mRNA-1 |
| chr3_2 | CDS | 55532631 | 55532849 | 55532631 | ID=Msa0412250-mRNA-1:cds;Parent=Msa0412250-mRNA-1 |
| chr3_2 | CDS | 55532335 | 55532544 | 55532335 | ID=Msa0412250-mRNA-1:cds;Parent=Msa0412250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
