Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416660 | XP_003600894.1 | 91.599 | 619 | 26 | 1 | 1 | 619 | 1 | 593 | 0.0 | 1140 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416660 | sp|Q8GV43|PLCD6_ARATH | 49.762 | 629 | 260 | 11 | 7 | 614 | 20 | 613 | 0.0 | 600 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416660 | G7JB93 | 91.599 | 619 | 26 | 1 | 1 | 619 | 1 | 593 | 0.0 | 1140 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0217700 | Msa0416660 | 0.801241 | 9.881470e-49 | -8.615850e-47 |
| Msa0369230 | Msa0416660 | 0.865559 | 5.410677e-65 | -8.615850e-47 |
| Msa0416660 | Msa0463270 | 0.855004 | 8.434379e-62 | -8.615850e-47 |
| Msa0416660 | Msa0506860 | 0.812449 | 4.215920e-51 | -8.615850e-47 |
| Msa0416660 | Msa0508880 | 0.836748 | 7.801673e-57 | -8.615850e-47 |
| Msa0416660 | Msa0607320 | 0.806821 | 6.826912e-50 | -8.615850e-47 |
| Msa0416660 | Msa0899970 | 0.816949 | 4.246880e-52 | -8.615850e-47 |
| Msa0416660 | Msa0965080 | 0.812834 | 3.472484e-51 | -8.615850e-47 |
| Msa0416660 | Msa0965290 | 0.815186 | 1.051754e-51 | -8.615850e-47 |
| Msa0416660 | Msa0999680 | 0.819803 | 9.585981e-53 | -8.615850e-47 |
| Msa0416660 | Msa1034500 | 0.803398 | 3.552872e-49 | -8.615850e-47 |
| Msa0416660 | Msa1111380 | 0.800098 | 1.690530e-48 | -8.615850e-47 |
| Msa0416660 | Msa1400340 | 0.801640 | 8.184931e-49 | -8.615850e-47 |
| Msa0416660 | Msa1430550 | 0.800369 | 1.488807e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416660 | MtrunA17_Chr3g0113471 | 91.599 | 619 | 26 | 1 | 1 | 619 | 1 | 593 | 0.0 | 1140 |
| Msa0416660 | MtrunA17_Chr3g0113521 | 81.774 | 620 | 84 | 3 | 1 | 619 | 1 | 592 | 0.0 | 1027 |
| Msa0416660 | MtrunA17_Chr5g0437041 | 55.040 | 625 | 235 | 10 | 7 | 614 | 12 | 607 | 0.0 | 669 |
| Msa0416660 | MtrunA17_Chr5g0430181 | 50.249 | 603 | 252 | 10 | 24 | 611 | 22 | 591 | 0.0 | 592 |
| Msa0416660 | MtrunA17_Chr5g0437061 | 57.905 | 525 | 163 | 8 | 113 | 613 | 1 | 491 | 0.0 | 589 |
| Msa0416660 | MtrunA17_Chr5g0437081 | 48.714 | 622 | 272 | 10 | 1 | 611 | 1 | 586 | 0.0 | 577 |
| Msa0416660 | MtrunA17_Chr3g0113531 | 47.826 | 621 | 281 | 9 | 2 | 613 | 6 | 592 | 0.0 | 554 |
| Msa0416660 | MtrunA17_Chr3g0112551 | 48.777 | 613 | 260 | 9 | 12 | 613 | 2 | 571 | 0.0 | 551 |
| Msa0416660 | MtrunA17_Chr5g0430191 | 44.137 | 614 | 278 | 14 | 3 | 611 | 17 | 570 | 9.54e-166 | 485 |
| Msa0416660 | MtrunA17_Chr5g0437051 | 42.857 | 91 | 48 | 1 | 23 | 109 | 18 | 108 | 1.94e-17 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416660 | AT2G40116.1 | 49.762 | 629 | 260 | 11 | 7 | 614 | 20 | 613 | 0.0 | 600 |
| Msa0416660 | AT3G08510.2 | 48.534 | 614 | 273 | 11 | 1 | 609 | 1 | 576 | 0.0 | 562 |
| Msa0416660 | AT3G08510.1 | 48.534 | 614 | 273 | 11 | 1 | 609 | 1 | 576 | 0.0 | 562 |
| Msa0416660 | AT5G58690.3 | 48.173 | 602 | 272 | 6 | 13 | 613 | 15 | 577 | 0.0 | 561 |
| Msa0416660 | AT5G58690.1 | 48.173 | 602 | 272 | 6 | 13 | 613 | 15 | 577 | 0.0 | 561 |
| Msa0416660 | AT5G58690.2 | 48.409 | 597 | 268 | 6 | 18 | 613 | 1 | 558 | 0.0 | 560 |
| Msa0416660 | AT5G58700.3 | 47.403 | 616 | 285 | 7 | 7 | 613 | 11 | 596 | 0.0 | 557 |
| Msa0416660 | AT5G58700.1 | 47.403 | 616 | 285 | 7 | 7 | 613 | 11 | 596 | 0.0 | 557 |
| Msa0416660 | AT3G55940.1 | 47.106 | 622 | 273 | 12 | 1 | 609 | 1 | 579 | 0.0 | 550 |
| Msa0416660 | AT5G58700.2 | 50.973 | 514 | 214 | 6 | 109 | 613 | 4 | 488 | 1.56e-176 | 510 |
| Msa0416660 | AT5G58670.1 | 45.779 | 616 | 272 | 11 | 3 | 614 | 2 | 559 | 2.13e-173 | 504 |
| Msa0416660 | AT3G08510.4 | 45.440 | 614 | 263 | 12 | 1 | 609 | 1 | 547 | 1.80e-172 | 502 |
| Msa0416660 | AT3G08510.3 | 45.440 | 614 | 263 | 12 | 1 | 609 | 1 | 547 | 1.80e-172 | 502 |
| Msa0416660 | AT4G38530.1 | 44.300 | 614 | 277 | 13 | 6 | 614 | 5 | 558 | 5.40e-170 | 496 |
| Msa0416660 | AT3G47290.1 | 38.826 | 528 | 240 | 11 | 87 | 611 | 81 | 528 | 3.25e-107 | 333 |
| Msa0416660 | AT3G47290.2 | 38.252 | 515 | 235 | 10 | 87 | 598 | 81 | 515 | 2.88e-103 | 325 |
| Msa0416660 | AT3G47220.1 | 38.086 | 533 | 236 | 16 | 87 | 611 | 82 | 528 | 2.97e-96 | 305 |
Find 133 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTGACACATTCATTTATTT+TGG | 0.148652 | 3_2:+63566134 | Msa0416660:three_prime_UTR |
| GAGTAATTGAACTTGATTTA+TGG | 0.148872 | 3_2:+63563658 | Msa0416660:CDS |
| TGGACAATTGGTATCCTATT+TGG | 0.164917 | 3_2:+63565839 | Msa0416660:CDS |
| AGAACAAAATTGCACCTTAT+TGG | 0.178097 | 3_2:+63561775 | Msa0416660:CDS |
| AATGAGTAAGAAAATGATTT+TGG | 0.189464 | 3_2:-63561466 | None:intergenic |
| TGTTTCAAAGCCTCTATAAT+TGG | 0.221396 | 3_2:-63563627 | None:intergenic |
| AGTGCATACCTCATCCTTTA+AGG | 0.223441 | 3_2:-63561921 | None:intergenic |
| CTCCTTTAGGATAAATTCTT+AGG | 0.242663 | 3_2:-63564882 | None:intergenic |
| CAGATGGCAAATAAAATATT+TGG | 0.245584 | 3_2:+63564243 | Msa0416660:intron |
| TGATTTCAATGGTCCCTTAA+AGG | 0.259016 | 3_2:+63561907 | Msa0416660:CDS |
| GATTGAACACGTTCTCCTTT+AGG | 0.264859 | 3_2:-63564895 | None:intergenic |
| AAATTGCACCTTATTGGATT+TGG | 0.270742 | 3_2:+63561781 | Msa0416660:CDS |
| ACTTCTTGAATTAGAAATTC+AGG | 0.277184 | 3_2:-63565461 | None:intergenic |
| CTCATGGAGCCGACCTAATT+AGG | 0.293120 | 3_2:+63564762 | Msa0416660:CDS |
| ATCCGGAGCAACGCGAGTTC+TGG | 0.295971 | 3_2:-63565892 | None:intergenic |
| TGTATTCACGCGCACCTTGC+TGG | 0.315471 | 3_2:-63564616 | None:intergenic |
| GTTCTATGGCAGAAAGTAAA+TGG | 0.329143 | 3_2:+63564551 | Msa0416660:intron |
| AGTTTGATAGGTACCTAATT+AGG | 0.337092 | 3_2:-63564775 | None:intergenic |
| AAACATTTGGTTAGTGCAAC+TGG | 0.337432 | 3_2:-63563839 | None:intergenic |
| AGAACCACCTTTAGATCTTA+AGG | 0.339714 | 3_2:+63561673 | Msa0416660:CDS |
| TCAGTTTGAGGATGCTCCTT+TGG | 0.341714 | 3_2:-63564357 | None:intergenic |
| GGACACAATTCCTACCTTAC+TGG | 0.347434 | 3_2:+63563573 | Msa0416660:CDS |
| TCGAACTCTTCGTCCCAAAT+AGG | 0.347640 | 3_2:-63565853 | None:intergenic |
| TTGACGGCGGTAAAGTTAAA+AGG | 0.351013 | 3_2:+63564699 | Msa0416660:CDS |
| GGACAATTGGTATCCTATTT+GGG | 0.357053 | 3_2:+63565840 | Msa0416660:CDS |
| GCGTGACAGGTTTGTATTGC+TGG | 0.359926 | 3_2:+63565775 | Msa0416660:intron |
| TCACATTATTTCATGTATAC+AGG | 0.373381 | 3_2:+63563552 | Msa0416660:CDS |
| CAGAGCTAAGACATGGATTT+CGG | 0.377392 | 3_2:+63565977 | Msa0416660:CDS |
| AATGAAACTAGCAGTATTGC+AGG | 0.384072 | 3_2:+63561845 | Msa0416660:CDS |
| GCAAAGTTATCCTGAAGTTT+TGG | 0.384127 | 3_2:-63563935 | None:intergenic |
| TCCATTTGACACATGATTGT+TGG | 0.385768 | 3_2:-63564385 | None:intergenic |
| AGACGTCGTTCATCCAGATA+TGG | 0.386264 | 3_2:+63566088 | Msa0416660:exon |
| AGTTGCACTAACCAAATGTT+TGG | 0.392870 | 3_2:+63563841 | Msa0416660:CDS |
| CCACCTAACACCAAAACTTC+AGG | 0.394243 | 3_2:+63563925 | Msa0416660:CDS |
| GTGAATCCGATTCCCATATC+TGG | 0.402336 | 3_2:-63566101 | None:intergenic |
| CCATGTCTTAGCTCTGATAT+AGG | 0.405158 | 3_2:-63565970 | None:intergenic |
| TATAAACTCTCTTCCACAAA+AGG | 0.407161 | 3_2:+63561519 | Msa0416660:five_prime_UTR |
| ATTGCAGGTACATCATGATA+TGG | 0.407698 | 3_2:+63563518 | Msa0416660:intron |
| GATTGGCTCCAAATCCAATA+AGG | 0.408541 | 3_2:-63561789 | None:intergenic |
| CAGTATTGCAGGACTCAGTT+TGG | 0.408717 | 3_2:+63561856 | Msa0416660:CDS |
| ACAATATATTTAAAGTTTCA+AGG | 0.413897 | 3_2:-63566065 | None:intergenic |
| ACAGGAACAACAAGATTCTA+TGG | 0.416912 | 3_2:+63564437 | Msa0416660:CDS |
| TAAATGTGGCCTAAAATTTG+TGG | 0.417479 | 3_2:-63564917 | None:intergenic |
| ACATAGAACAAAACTTTCAT+AGG | 0.418791 | 3_2:+63561249 | Msa0416660:five_prime_UTR |
| TTCCAGAACTCGCGTTGCTC+CGG | 0.431005 | 3_2:+63565890 | Msa0416660:CDS |
| CAATGCTTATCTAACTAGAT+AGG | 0.435098 | 3_2:-63564164 | None:intergenic |
| GGTGGTATTAAAGTAGTTCA+TGG | 0.435995 | 3_2:+63563699 | Msa0416660:CDS |
| CGAGTTCTGGAACAGTCAAT+TGG | 0.437931 | 3_2:-63565879 | None:intergenic |
| CTAACCTTTGTGTAGAAGTC+TGG | 0.438109 | 3_2:-63565690 | None:intergenic |
| CTGCTTCTAGATGATTTCAA+TGG | 0.441202 | 3_2:+63561896 | Msa0416660:CDS |
| CGAAGTGAAAGATAAAGATA+AGG | 0.444805 | 3_2:+63565915 | Msa0416660:CDS |
| GGATCAACTACTTAGATTCA+TGG | 0.446194 | 3_2:+63561739 | Msa0416660:CDS |
| TAGTAAATTGATTTCCAGTA+AGG | 0.448160 | 3_2:-63563587 | None:intergenic |
| CAAGTGTAAAGATGGACAAT+TGG | 0.450323 | 3_2:+63565827 | Msa0416660:CDS |
| TTTGGAGCCAATCATTGAAA+AGG | 0.458273 | 3_2:+63561799 | Msa0416660:CDS |
| TGAACATCCCTTGCATCAAT+CGG | 0.458373 | 3_2:-63565406 | None:intergenic |
| CTTTATCTTTCACTTCGATC+CGG | 0.459942 | 3_2:-63565909 | None:intergenic |
| TCTTCTAAAGTTAGAATCAC+TGG | 0.460622 | 3_2:-63563902 | None:intergenic |
| GTTTGAGGATGCTCCTTTGG+TGG | 0.464803 | 3_2:-63564354 | None:intergenic |
| CCACATTTAGGGTGGATGTA+TGG | 0.468165 | 3_2:+63564931 | Msa0416660:CDS |
| GTGCATACCTCATCCTTTAA+GGG | 0.469745 | 3_2:-63561920 | None:intergenic |
| CCACCATCTTTAGTTGAAGA+TGG | 0.471280 | 3_2:-63563681 | None:intergenic |
| TGGCCATCTTCAACTAAAGA+TGG | 0.471964 | 3_2:+63563678 | Msa0416660:CDS |
| ATCCTAAGAATTTATCCTAA+AGG | 0.472397 | 3_2:+63564880 | Msa0416660:CDS |
| GATGAAAACAAGTGTAAAGA+TGG | 0.472423 | 3_2:+63565819 | Msa0416660:CDS |
| GAAGTGAAAGATAAAGATAA+GGG | 0.476695 | 3_2:+63565916 | Msa0416660:CDS |
| GATGGTTGCATTCAATATGC+AGG | 0.480468 | 3_2:+63564960 | Msa0416660:CDS |
| AAAGCTTCCTTAAGATCTAA+AGG | 0.481386 | 3_2:-63561680 | None:intergenic |
| GAAAGTAAATGGTGAAGAGA+TGG | 0.484846 | 3_2:+63564562 | Msa0416660:intron |
| TCAAGAAGTTGCAAATAATG+AGG | 0.498455 | 3_2:+63565475 | Msa0416660:CDS |
| GCCAACAATCATGTGTCAAA+TGG | 0.498994 | 3_2:+63564384 | Msa0416660:CDS |
| CAATGGTCCCTTAAAGGATG+AGG | 0.514587 | 3_2:+63561913 | Msa0416660:CDS |
| AAATCTGCTTCTGAATCTCA+TGG | 0.515731 | 3_2:+63564746 | Msa0416660:CDS |
| TGTTGCTTTGTGTGACAGAA+AGG | 0.520816 | 3_2:+63566002 | Msa0416660:CDS |
| AAGTATACAAAGGAGTTGGC+TGG | 0.527209 | 3_2:+63565625 | Msa0416660:CDS |
| CAGGTTTGTATTGCTGGAGT+GGG | 0.531989 | 3_2:+63565781 | Msa0416660:intron |
| CAGTGATAAACCAATTATAG+AGG | 0.533232 | 3_2:+63563617 | Msa0416660:CDS |
| AAGGATAGACTAAAAGTTGA+CGG | 0.536336 | 3_2:+63564683 | Msa0416660:CDS |
| AGGTATAATGTTAGTCATGA+AGG | 0.539347 | 3_2:+63566179 | Msa0416660:three_prime_UTR |
| GTTCATCCAGATATGGGAAT+CGG | 0.539767 | 3_2:+63566095 | Msa0416660:three_prime_UTR |
| TGGTGAAAATTACATGTCAA+AGG | 0.547867 | 3_2:+63561718 | Msa0416660:CDS |
| CAAGGGATGTTCAAAGCGAA+TGG | 0.550048 | 3_2:+63565416 | Msa0416660:CDS |
| TTGTTGGCACCATCAGTTTG+AGG | 0.553822 | 3_2:-63564369 | None:intergenic |
| TTGAAGATATGCATATTGTC+CGG | 0.556239 | 3_2:-63564107 | None:intergenic |
| ATTATAGAGGCTTTGAAACA+AGG | 0.556418 | 3_2:+63563630 | Msa0416660:CDS |
| CCTATATCAGAGCTAAGACA+TGG | 0.556857 | 3_2:+63565970 | Msa0416660:CDS |
| TGAAGATGAAACATGGGGAC+AGG | 0.561303 | 3_2:+63564419 | Msa0416660:CDS |
| GACGTCGTTCATCCAGATAT+GGG | 0.561720 | 3_2:+63566089 | Msa0416660:exon |
| AGACATTTGATTACAATCCA+TGG | 0.562214 | 3_2:+63564638 | Msa0416660:CDS |
| AAAATCAGAAGGTACTATGA+AGG | 0.562601 | 3_2:+63564664 | Msa0416660:CDS |
| ATAAACTCTCTTCCACAAAA+GGG | 0.564431 | 3_2:+63561520 | Msa0416660:five_prime_UTR |
| GTCAAAGTATACAAAGGAGT+TGG | 0.566387 | 3_2:+63565621 | Msa0416660:CDS |
| AAATCACTCCGATTGATGCA+AGG | 0.570110 | 3_2:+63565398 | Msa0416660:CDS |
| GTCTTATGATAATTTGCTGA+AGG | 0.570195 | 3_2:+63566159 | Msa0416660:three_prime_UTR |
| AAATTGATTTCCAGTAAGGT+AGG | 0.573386 | 3_2:-63563583 | None:intergenic |
| GGATGTTCAAAGCGAATGGA+GGG | 0.590594 | 3_2:+63565420 | Msa0416660:CDS |
| ACCTTTGTGTAGAAGTCTGG+TGG | 0.590735 | 3_2:-63565687 | None:intergenic |
| TTCAAAGCGAATGGAGGGTG+CGG | 0.590959 | 3_2:+63565425 | Msa0416660:CDS |
| TACATGAAATAATGTGACAA+GGG | 0.596814 | 3_2:-63563546 | None:intergenic |
| ACAGGTTTGTATTGCTGGAG+TGG | 0.597595 | 3_2:+63565780 | Msa0416660:intron |
| AATCACTCCGATTGATGCAA+GGG | 0.599396 | 3_2:+63565399 | Msa0416660:CDS |
| TATATCAACTAAACCACCAA+AGG | 0.600524 | 3_2:+63564341 | Msa0416660:CDS |
| AATCGTCTGAAGATGAAACA+TGG | 0.601806 | 3_2:+63564412 | Msa0416660:CDS |
| TTATCTAACTAGATAGGAGA+TGG | 0.603242 | 3_2:-63564158 | None:intergenic |
| GGGATGTTCAAAGCGAATGG+AGG | 0.604762 | 3_2:+63565419 | Msa0416660:CDS |
| TTTCAGACACCATCACGTGC+CGG | 0.605791 | 3_2:+63564088 | Msa0416660:intron |
| TATTTGCTCATTTAAAACAG+AGG | 0.609376 | 3_2:+63561553 | Msa0416660:five_prime_UTR |
| GTGGATGTATGGAGCTCAGA+TGG | 0.609593 | 3_2:+63564942 | Msa0416660:CDS |
| TATATTTATGCATGAGATCG+AGG | 0.610657 | 3_2:-63561195 | None:intergenic |
| TAAACTGAAAACTGAGGACA+TGG | 0.614826 | 3_2:+63564461 | Msa0416660:CDS |
| CCATACATCCACCCTAAATG+TGG | 0.621111 | 3_2:-63564931 | None:intergenic |
| ATCCATGGTGGAAAATCAGA+AGG | 0.621784 | 3_2:+63564653 | Msa0416660:CDS |
| GCATATTGTCCGGCACGTGA+TGG | 0.621968 | 3_2:-63564097 | None:intergenic |
| ATCGTCTGAAGATGAAACAT+GGG | 0.625646 | 3_2:+63564413 | Msa0416660:CDS |
| TGATAGGTACCTAATTAGGT+CGG | 0.627187 | 3_2:-63564771 | None:intergenic |
| GTTGCTTTGTGTGACAGAAA+GGG | 0.634451 | 3_2:+63566003 | Msa0416660:CDS |
| AAACAGGTCAAAGTATACAA+AGG | 0.637507 | 3_2:+63565615 | Msa0416660:intron |
| AAGGAGCATCCTCAAACTGA+TGG | 0.641373 | 3_2:+63564360 | Msa0416660:CDS |
| CCATCTTCAACTAAAGATGG+TGG | 0.646507 | 3_2:+63563681 | Msa0416660:CDS |
| TCTGTTATACAATCTGTCGT+AGG | 0.648459 | 3_2:-63564282 | None:intergenic |
| GCTTCCTTAAGATCTAAAGG+TGG | 0.660925 | 3_2:-63561677 | None:intergenic |
| CATTTGATTACAATCCATGG+TGG | 0.664989 | 3_2:+63564641 | Msa0416660:CDS |
| TTTAAAACAGAGGAAAACAG+AGG | 0.666307 | 3_2:+63561563 | Msa0416660:five_prime_UTR |
| TTTGGTTAGTGCAACTGGAG+TGG | 0.667170 | 3_2:-63563834 | None:intergenic |
| TATACAAAGGAGTTGGCTGG+AGG | 0.672328 | 3_2:+63565628 | Msa0416660:CDS |
| ATACATGAAATAATGTGACA+AGG | 0.675745 | 3_2:-63563547 | None:intergenic |
| TATTACAAATCAAACCAGCA+AGG | 0.677933 | 3_2:+63564602 | Msa0416660:CDS |
| ATATATTTAAAGTTTCAAGG+TGG | 0.680940 | 3_2:-63566062 | None:intergenic |
| TATGGCTAAACTGAAAACTG+AGG | 0.685214 | 3_2:+63564455 | Msa0416660:CDS |
| TCCACCAGACTTCTACACAA+AGG | 0.690190 | 3_2:+63565686 | Msa0416660:CDS |
| TCAACTACTTAGATTCATGG+TGG | 0.694803 | 3_2:+63561742 | Msa0416660:CDS |
| TCGTCTGAAGATGAAACATG+GGG | 0.715707 | 3_2:+63564414 | Msa0416660:CDS |
| GATAGACTAAAAGTTGACGG+CGG | 0.769968 | 3_2:+63564686 | Msa0416660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTCTTTTCTAG+AGG | - | chr3_2:63561134-63561153 | None:intergenic | 15.0% |
| !!! | TATATATTTTTATGCTAATG+TGG | + | chr3_2:63561954-63561973 | Msa0416660:intron | 15.0% |
| !! | GTTATGAAAAAAAATTATCT+TGG | - | chr3_2:63563010-63563029 | None:intergenic | 15.0% |
| !!! | AAAATGAGATGATTTTTATT+CGG | + | chr3_2:63563301-63563320 | Msa0416660:intron | 15.0% |
| !! | GTATTATTTAATCTAATCAA+AGG | - | chr3_2:63563354-63563373 | None:intergenic | 15.0% |
| !!! | ATTTTTTCATATTATTAGTC+AGG | - | chr3_2:63563487-63563506 | None:intergenic | 15.0% |
| !!! | TCATATTATTATTTTTTTGG+TGG | - | chr3_2:63565128-63565147 | None:intergenic | 15.0% |
| !!! | AATATCACTATTGTTTTAAA+AGG | - | chr3_2:63565250-63565269 | None:intergenic | 15.0% |
| !! | AAATAAATTTACAAAATGTG+TGG | - | chr3_2:63565738-63565757 | None:intergenic | 15.0% |
| !!! | ACAATATATTTAAAGTTTCA+AGG | - | chr3_2:63566068-63566087 | None:intergenic | 15.0% |
| !!! | AAAATGATTTTGGTTTTCAA+TGG | - | chr3_2:63561281-63561300 | None:intergenic | 20.0% |
| !!! | AATGAGTAAGAAAATGATTT+TGG | - | chr3_2:63561291-63561310 | None:intergenic | 20.0% |
| !!! | AAAATGATTTTGGTTTTCAA+TGG | - | chr3_2:63561281-63561300 | None:intergenic | 20.0% |
| !!! | AATGAGTAAGAAAATGATTT+TGG | - | chr3_2:63561291-63561310 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTCATTCTCAATT+TGG | - | chr3_2:63561603-63561622 | None:intergenic | 20.0% |
| !! | TCCTTGAAAATATATACTAA+CGG | - | chr3_2:63562110-63562129 | None:intergenic | 20.0% |
| !!! | ACTCATTAACTTATGTTTTA+AGG | - | chr3_2:63562147-63562166 | None:intergenic | 20.0% |
| !!! | TAACATGACCTATATTTTTA+TGG | + | chr3_2:63562281-63562300 | Msa0416660:intron | 20.0% |
| !!! | AACATGACCTATATTTTTAT+GGG | + | chr3_2:63562282-63562301 | Msa0416660:intron | 20.0% |
| !! | TTAGAGAATATTTCTTCTTT+GGG | - | chr3_2:63562347-63562366 | None:intergenic | 20.0% |
| !! | TTTAGAGAATATTTCTTCTT+TGG | - | chr3_2:63562348-63562367 | None:intergenic | 20.0% |
| !! | CAATAGTAGAAATAGATTAT+TGG | - | chr3_2:63562425-63562444 | None:intergenic | 20.0% |
| !!! | TAACATTTCCCTATTTTTAT+TGG | + | chr3_2:63562475-63562494 | Msa0416660:intron | 20.0% |
| !!! | AACATTTCCCTATTTTTATT+GGG | + | chr3_2:63562476-63562495 | Msa0416660:intron | 20.0% |
| !! | TCAGATTTGACAAATAAAAA+TGG | - | chr3_2:63562680-63562699 | None:intergenic | 20.0% |
| !!! | TAGCCAAACATTTTATTATT+TGG | + | chr3_2:63562738-63562757 | Msa0416660:intron | 20.0% |
| !! | GTTCCAAATAATAAAATGTT+TGG | - | chr3_2:63562744-63562763 | None:intergenic | 20.0% |
| !! | TTCATAACAAAAAAACTAAG+AGG | + | chr3_2:63563022-63563041 | Msa0416660:intron | 20.0% |
| !! | GCAAAAATTTCAAAATTGTT+AGG | + | chr3_2:63563060-63563079 | Msa0416660:intron | 20.0% |
| !!! | ATAAAACTCTTGGTTTATTT+TGG | - | chr3_2:63563168-63563187 | None:intergenic | 20.0% |
| !!! | CTTTATTTCAATAAAACTCT+TGG | - | chr3_2:63563178-63563197 | None:intergenic | 20.0% |
| !! | ATTCAATCACTTCTATTTAT+AGG | - | chr3_2:63564052-63564071 | None:intergenic | 20.0% |
| !!! | AGAAAAAATGATGATGAATA+TGG | - | chr3_2:63564216-63564235 | None:intergenic | 20.0% |
| !!! | AATTGTGTTTTTGGTATATT+TGG | + | chr3_2:63564987-63565006 | Msa0416660:intron | 20.0% |
| !! | AGATGGTTAATAATATGAAA+TGG | + | chr3_2:63565099-63565118 | Msa0416660:intron | 20.0% |
| !! | AGGTTTAAAAAAAATGTATG+CGG | - | chr3_2:63565329-63565348 | None:intergenic | 20.0% |
| !!! | TAAACACTTTTTTTTATGAC+AGG | + | chr3_2:63565367-63565386 | Msa0416660:intron | 20.0% |
| !!! | AAACACTTTTTTTTATGACA+GGG | + | chr3_2:63565368-63565387 | Msa0416660:intron | 20.0% |
| !!! | ATATATTTAAAGTTTCAAGG+TGG | - | chr3_2:63566065-63566084 | None:intergenic | 20.0% |
| ! | ATTGGAAAAAAAATGTAGTC+AGG | - | chr3_2:63561104-63561123 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTTTCTAGAGGTT+AGG | - | chr3_2:63561129-63561148 | None:intergenic | 25.0% |
| !!! | TATGAAAGTTTTGTTCTATG+TGG | - | chr3_2:63561250-63561269 | None:intergenic | 25.0% |
| ! | ACATAGAACAAAACTTTCAT+AGG | + | chr3_2:63561249-63561268 | Msa0416660:five_prime_UTR | 25.0% |
| !!! | TATGAAAGTTTTGTTCTATG+TGG | - | chr3_2:63561250-63561269 | None:intergenic | 25.0% |
| ! | ACATAGAACAAAACTTTCAT+AGG | + | chr3_2:63561249-63561268 | Msa0416660:five_prime_UTR | 25.0% |
| !! | TATTTGCTCATTTAAAACAG+AGG | + | chr3_2:63561553-63561572 | Msa0416660:five_prime_UTR | 25.0% |
| !! | TTAAGCTTTTTGACCAAAAA+AGG | + | chr3_2:63561635-63561654 | Msa0416660:CDS | 25.0% |
| !!! | CTTATTCACTTTACCTTTTT+TGG | - | chr3_2:63561651-63561670 | None:intergenic | 25.0% |
| ! | CAAAAAAGGTAAAGTGAATA+AGG | + | chr3_2:63561649-63561668 | Msa0416660:CDS | 25.0% |
| !! | TTCAAAACCTTTTCAATGAT+TGG | - | chr3_2:63561809-63561828 | None:intergenic | 25.0% |
| !! | ACCGTTAGTATATATTTTCA+AGG | + | chr3_2:63562106-63562125 | Msa0416660:intron | 25.0% |
| ! | AATTGAATACGCAAGTATTA+AGG | + | chr3_2:63562223-63562242 | Msa0416660:intron | 25.0% |
| ! | ATTGAATACGCAAGTATTAA+GGG | + | chr3_2:63562224-63562243 | Msa0416660:intron | 25.0% |
| ! | ATCACTACCCATAAAAATAT+AGG | - | chr3_2:63562292-63562311 | None:intergenic | 25.0% |
| ! | TAGAGAATATTTCTTCTTTG+GGG | - | chr3_2:63562346-63562365 | None:intergenic | 25.0% |
| !!! | AAATGTTAATTTGTCCCTTA+AGG | - | chr3_2:63562463-63562482 | None:intergenic | 25.0% |
| ! | AACATGACCCAATAAAAATA+GGG | - | chr3_2:63562486-63562505 | None:intergenic | 25.0% |
| ! | TAACATGACCCAATAAAAAT+AGG | - | chr3_2:63562487-63562506 | None:intergenic | 25.0% |
| ! | CACAAGTTAAAGAATTCAAA+AGG | + | chr3_2:63562523-63562542 | Msa0416660:intron | 25.0% |
| ! | ATAGAATGCACAAAATTTCA+GGG | - | chr3_2:63562558-63562577 | None:intergenic | 25.0% |
| ! | TATAGAATGCACAAAATTTC+AGG | - | chr3_2:63562559-63562578 | None:intergenic | 25.0% |
| !! | CCAATATAGTAACTTTTTGT+TGG | - | chr3_2:63562617-63562636 | None:intergenic | 25.0% |
| ! | CCAACAAAAAGTTACTATAT+TGG | + | chr3_2:63562614-63562633 | Msa0416660:intron | 25.0% |
| ! | TAATACTCTAAACAAAGAAG+TGG | - | chr3_2:63562796-63562815 | None:intergenic | 25.0% |
| !!! | TTATTTTGGTAGATAGGAAA+TGG | - | chr3_2:63563154-63563173 | None:intergenic | 25.0% |
| !! | CATACACTTAGAATTTTCAT+TGG | - | chr3_2:63563249-63563268 | None:intergenic | 25.0% |
| ! | AAATTTATGTATCTCATTGC+AGG | + | chr3_2:63563503-63563522 | Msa0416660:intron | 25.0% |
| ! | TACATGAAATAATGTGACAA+GGG | - | chr3_2:63563549-63563568 | None:intergenic | 25.0% |
| ! | ATACATGAAATAATGTGACA+AGG | - | chr3_2:63563550-63563569 | None:intergenic | 25.0% |
| ! | TCACATTATTTCATGTATAC+AGG | + | chr3_2:63563552-63563571 | Msa0416660:CDS | 25.0% |
| !! | TAGTAAATTGATTTCCAGTA+AGG | - | chr3_2:63563590-63563609 | None:intergenic | 25.0% |
| ! | GAGTAATTGAACTTGATTTA+TGG | + | chr3_2:63563658-63563677 | Msa0416660:CDS | 25.0% |
| !! | GATTGTTTTCTTGAATCTTA+TGG | + | chr3_2:63563779-63563798 | Msa0416660:intron | 25.0% |
| ! | TTAATTCTTGAAATCAATGC+AGG | + | chr3_2:63563804-63563823 | Msa0416660:intron | 25.0% |
| !! | GACAAATGCATATTCTTTTA+TGG | - | chr3_2:63563870-63563889 | None:intergenic | 25.0% |
| !!! | ATTTTTTCTATTCATGCAGA+TGG | + | chr3_2:63564227-63564246 | Msa0416660:intron | 25.0% |
| ! | CAGATGGCAAATAAAATATT+TGG | + | chr3_2:63564243-63564262 | Msa0416660:intron | 25.0% |
| !!! | TTTTCTGAAAAGTGAAATGA+TGG | - | chr3_2:63564509-63564528 | None:intergenic | 25.0% |
| ! | GTATAGAAATCAAGTTTGAT+AGG | - | chr3_2:63564790-63564809 | None:intergenic | 25.0% |
| !! | CATACATTGTTATGTTTTTC+AGG | + | chr3_2:63564842-63564861 | Msa0416660:intron | 25.0% |
| ! | ATCCTAAGAATTTATCCTAA+AGG | + | chr3_2:63564880-63564899 | Msa0416660:CDS | 25.0% |
| ! | AATTACGTTCATGAATTAGA+TGG | + | chr3_2:63565082-63565101 | Msa0416660:intron | 25.0% |
| ! | CTTGAAAATCATGGTTAATT+AGG | - | chr3_2:63565184-63565203 | None:intergenic | 25.0% |
| !!! | GTTTTAAAAGGTTCTCTAAT+AGG | - | chr3_2:63565238-63565257 | None:intergenic | 25.0% |
| ! | TAAAAAAAATGTATGCGGAA+TGG | - | chr3_2:63565324-63565343 | None:intergenic | 25.0% |
| !! | TTAAACCTTGTTGTCATATT+AGG | + | chr3_2:63565341-63565360 | Msa0416660:intron | 25.0% |
| ! | TATTTCCTAATATGACAACA+AGG | - | chr3_2:63565349-63565368 | None:intergenic | 25.0% |
| !!! | AACACTTTTTTTTATGACAG+GGG | + | chr3_2:63565369-63565388 | Msa0416660:intron | 25.0% |
| ! | ACTTCTTGAATTAGAAATTC+AGG | - | chr3_2:63565464-63565483 | None:intergenic | 25.0% |
| ! | ACCTTTAATCACTTTACAAA+AGG | + | chr3_2:63565550-63565569 | Msa0416660:intron | 25.0% |
| ! | CCTTTAATCACTTTACAAAA+GGG | + | chr3_2:63565551-63565570 | Msa0416660:intron | 25.0% |
| ! | GAAGTGAAAGATAAAGATAA+GGG | + | chr3_2:63565916-63565935 | Msa0416660:CDS | 25.0% |
| TATATTTATGCATGAGATCG+AGG | - | chr3_2:63561198-63561217 | None:intergenic | 30.0% | |
| TATAAACTCTCTTCCACAAA+AGG | + | chr3_2:63561341-63561360 | Msa0416660:intron | 30.0% | |
| ATAAACTCTCTTCCACAAAA+GGG | + | chr3_2:63561342-63561361 | Msa0416660:intron | 30.0% | |
| TATAAACTCTCTTCCACAAA+AGG | + | chr3_2:63561341-63561360 | Msa0416660:intron | 30.0% | |
| ATAAACTCTCTTCCACAAAA+GGG | + | chr3_2:63561342-63561361 | Msa0416660:intron | 30.0% | |
| ! | TTTAAAACAGAGGAAAACAG+AGG | + | chr3_2:63561563-63561582 | Msa0416660:five_prime_UTR | 30.0% |
| AAAGCTTCCTTAAGATCTAA+AGG | - | chr3_2:63561683-63561702 | None:intergenic | 30.0% | |
| ! | ATTTTCACCATTTGCAAACT+TGG | - | chr3_2:63561708-63561727 | None:intergenic | 30.0% |
| TGGTGAAAATTACATGTCAA+AGG | + | chr3_2:63561718-63561737 | Msa0416660:CDS | 30.0% | |
| AGAACAAAATTGCACCTTAT+TGG | + | chr3_2:63561775-63561794 | Msa0416660:CDS | 30.0% | |
| AAATTGCACCTTATTGGATT+TGG | + | chr3_2:63561781-63561800 | Msa0416660:CDS | 30.0% | |
| !!! | CATTGAAAAGGTTTTGAAAG+TGG | + | chr3_2:63561811-63561830 | Msa0416660:CDS | 30.0% |
| AAAAAACCATTTGAGCAATG+TGG | + | chr3_2:63562073-63562092 | Msa0416660:intron | 30.0% | |
| !! | ATTCATTAACTTGTGCCTTA+AGG | + | chr3_2:63562445-63562464 | Msa0416660:intron | 30.0% |
| !! | TTCATTAACTTGTGCCTTAA+GGG | + | chr3_2:63562446-63562465 | Msa0416660:intron | 30.0% |
| AATGTTAACTTATGCCCTTA+AGG | - | chr3_2:63562655-63562674 | None:intergenic | 30.0% | |
| ACTAGAAACTCAACATTCAT+TGG | + | chr3_2:63562715-63562734 | Msa0416660:intron | 30.0% | |
| !! | AAATTTTTGCCACTTGAACT+AGG | - | chr3_2:63563050-63563069 | None:intergenic | 30.0% |
| !!! | CTTGGTTTATTTTGGTAGAT+AGG | - | chr3_2:63563160-63563179 | None:intergenic | 30.0% |
| ! | AAATTGATTTCCAGTAAGGT+AGG | - | chr3_2:63563586-63563605 | None:intergenic | 30.0% |
| CAGTGATAAACCAATTATAG+AGG | + | chr3_2:63563617-63563636 | Msa0416660:CDS | 30.0% | |
| TGTTTCAAAGCCTCTATAAT+TGG | - | chr3_2:63563630-63563649 | None:intergenic | 30.0% | |
| !! | ATTATAGAGGCTTTGAAACA+AGG | + | chr3_2:63563630-63563649 | Msa0416660:CDS | 30.0% |
| ! | GGTGCATTATATTTTTCTAG+TGG | - | chr3_2:63563747-63563766 | None:intergenic | 30.0% |
| AATATAATGCACCATAGAGT+TGG | + | chr3_2:63563754-63563773 | Msa0416660:intron | 30.0% | |
| AAAACAATCATCCAACTCTA+TGG | - | chr3_2:63563768-63563787 | None:intergenic | 30.0% | |
| ! | TTTTATGGCTTCCAAACATT+TGG | - | chr3_2:63563855-63563874 | None:intergenic | 30.0% |
| !! | TCTTCTAAAGTTAGAATCAC+TGG | - | chr3_2:63563905-63563924 | None:intergenic | 30.0% |
| TTGAAGATATGCATATTGTC+CGG | - | chr3_2:63564110-63564129 | None:intergenic | 30.0% | |
| TTATCTAACTAGATAGGAGA+TGG | - | chr3_2:63564161-63564180 | None:intergenic | 30.0% | |
| CAATGCTTATCTAACTAGAT+AGG | - | chr3_2:63564167-63564186 | None:intergenic | 30.0% | |
| GGAATAGCAAAATAGTCATA+AGG | - | chr3_2:63564195-63564214 | None:intergenic | 30.0% | |
| ACCAGCATCACTAAAAAATA+TGG | + | chr3_2:63564314-63564333 | Msa0416660:CDS | 30.0% | |
| !!! | ACCATATTTTTTAGTGATGC+TGG | - | chr3_2:63564318-63564337 | None:intergenic | 30.0% |
| TATATCAACTAAACCACCAA+AGG | + | chr3_2:63564341-63564360 | Msa0416660:CDS | 30.0% | |
| AATCTGAATCATCTGTTCTA+TGG | + | chr3_2:63564537-63564556 | Msa0416660:intron | 30.0% | |
| TATTACAAATCAAACCAGCA+AGG | + | chr3_2:63564602-63564621 | Msa0416660:CDS | 30.0% | |
| AGACATTTGATTACAATCCA+TGG | + | chr3_2:63564638-63564657 | Msa0416660:CDS | 30.0% | |
| !! | AAAATCAGAAGGTACTATGA+AGG | + | chr3_2:63564664-63564683 | Msa0416660:CDS | 30.0% |
| AAGGATAGACTAAAAGTTGA+CGG | + | chr3_2:63564683-63564702 | Msa0416660:CDS | 30.0% | |
| AGTTTGATAGGTACCTAATT+AGG | - | chr3_2:63564778-63564797 | None:intergenic | 30.0% | |
| !! | CTCCTTTAGGATAAATTCTT+AGG | - | chr3_2:63564885-63564904 | None:intergenic | 30.0% |
| ! | GTGTTCAATCCACAAATTTT+AGG | + | chr3_2:63564908-63564927 | Msa0416660:CDS | 30.0% |
| TAAATGTGGCCTAAAATTTG+TGG | - | chr3_2:63564920-63564939 | None:intergenic | 30.0% | |
| ! | ACAAATTTTAGGCCACATTT+AGG | + | chr3_2:63564919-63564938 | Msa0416660:CDS | 30.0% |
| ! | CAAATTTTAGGCCACATTTA+GGG | + | chr3_2:63564920-63564939 | Msa0416660:CDS | 30.0% |
| CATAACGCAATTCAAATACA+TGG | + | chr3_2:63565057-63565076 | Msa0416660:intron | 30.0% | |
| TCATGGTTAATTAGGTTTGA+TGG | - | chr3_2:63565176-63565195 | None:intergenic | 30.0% | |
| !! | TAACCATGATTTTCAAGCAT+TGG | + | chr3_2:63565187-63565206 | Msa0416660:intron | 30.0% |
| TCAAGAAGTTGCAAATAATG+AGG | + | chr3_2:63565475-63565494 | Msa0416660:CDS | 30.0% | |
| ! | ACTTTTAATATCTGCTTCAC+TGG | - | chr3_2:63565524-63565543 | None:intergenic | 30.0% |
| ! | CCCTTTTGTAAAGTGATTAA+AGG | - | chr3_2:63565554-63565573 | None:intergenic | 30.0% |
| AAACAGGTCAAAGTATACAA+AGG | + | chr3_2:63565615-63565634 | Msa0416660:intron | 30.0% | |
| GATGAAAACAAGTGTAAAGA+TGG | + | chr3_2:63565819-63565838 | Msa0416660:CDS | 30.0% | |
| CGAAGTGAAAGATAAAGATA+AGG | + | chr3_2:63565915-63565934 | Msa0416660:CDS | 30.0% | |
| ! | CGTGACACATTCATTTATTT+TGG | + | chr3_2:63566134-63566153 | Msa0416660:three_prime_UTR | 30.0% |
| !! | GTCTTATGATAATTTGCTGA+AGG | + | chr3_2:63566159-63566178 | Msa0416660:three_prime_UTR | 30.0% |
| AGGTATAATGTTAGTCATGA+AGG | + | chr3_2:63566179-63566198 | Msa0416660:three_prime_UTR | 30.0% | |
| !! | TTTTCTAGAGGTTAGGTGAT+TGG | - | chr3_2:63561122-63561141 | None:intergenic | 35.0% |
| ! | TAATTTCTCACACCCTTTTG+TGG | - | chr3_2:63561357-63561376 | None:intergenic | 35.0% |
| ! | TAATTTCTCACACCCTTTTG+TGG | - | chr3_2:63561357-63561376 | None:intergenic | 35.0% |
| AGAACCACCTTTAGATCTTA+AGG | + | chr3_2:63561673-63561692 | Msa0416660:CDS | 35.0% | |
| !! | GCTTTTTCCAAGTTTGCAAA+TGG | + | chr3_2:63561698-63561717 | Msa0416660:CDS | 35.0% |
| GGATCAACTACTTAGATTCA+TGG | + | chr3_2:63561739-63561758 | Msa0416660:CDS | 35.0% | |
| TCAACTACTTAGATTCATGG+TGG | + | chr3_2:63561742-63561761 | Msa0416660:CDS | 35.0% | |
| ! | TTTGGAGCCAATCATTGAAA+AGG | + | chr3_2:63561799-63561818 | Msa0416660:CDS | 35.0% |
| AATGAAACTAGCAGTATTGC+AGG | + | chr3_2:63561845-63561864 | Msa0416660:CDS | 35.0% | |
| CTGCTTCTAGATGATTTCAA+TGG | + | chr3_2:63561896-63561915 | Msa0416660:CDS | 35.0% | |
| TGATTTCAATGGTCCCTTAA+AGG | + | chr3_2:63561907-63561926 | Msa0416660:CDS | 35.0% | |
| ATATACTAACGGTAAAGTGC+AGG | - | chr3_2:63562099-63562118 | None:intergenic | 35.0% | |
| !! | TTCTTTAACTTGTGCCCTAA+GGG | - | chr3_2:63562517-63562536 | None:intergenic | 35.0% |
| !! | ATTCTTTAACTTGTGCCCTA+AGG | - | chr3_2:63562518-63562537 | None:intergenic | 35.0% |
| ATTCCTTATCTTGTGCCTTA+AGG | + | chr3_2:63562637-63562656 | Msa0416660:intron | 35.0% | |
| TTCCTTATCTTGTGCCTTAA+GGG | + | chr3_2:63562638-63562657 | Msa0416660:intron | 35.0% | |
| CGTGTGGGATAATAGAAAAT+TGG | - | chr3_2:63562893-63562912 | None:intergenic | 35.0% | |
| ATTGCAGGTACATCATGATA+TGG | + | chr3_2:63563518-63563537 | Msa0416660:intron | 35.0% | |
| GGTGGTATTAAAGTAGTTCA+TGG | + | chr3_2:63563699-63563718 | Msa0416660:CDS | 35.0% | |
| AAACATTTGGTTAGTGCAAC+TGG | - | chr3_2:63563842-63563861 | None:intergenic | 35.0% | |
| AGTTGCACTAACCAAATGTT+TGG | + | chr3_2:63563841-63563860 | Msa0416660:CDS | 35.0% | |
| !!! | TATCCTGAAGTTTTGGTGTT+AGG | - | chr3_2:63563931-63563950 | None:intergenic | 35.0% |
| ! | GCAAAGTTATCCTGAAGTTT+TGG | - | chr3_2:63563938-63563957 | None:intergenic | 35.0% |
| TCTGTTATACAATCTGTCGT+AGG | - | chr3_2:63564285-63564304 | None:intergenic | 35.0% | |
| !!! | TTTTTTAGTGATGCTGGTGA+GGG | - | chr3_2:63564312-63564331 | None:intergenic | 35.0% |
| !!! | ATTTTTTAGTGATGCTGGTG+AGG | - | chr3_2:63564313-63564332 | None:intergenic | 35.0% |
| TCCATTTGACACATGATTGT+TGG | - | chr3_2:63564388-63564407 | None:intergenic | 35.0% | |
| AATCGTCTGAAGATGAAACA+TGG | + | chr3_2:63564412-63564431 | Msa0416660:CDS | 35.0% | |
| ATCGTCTGAAGATGAAACAT+GGG | + | chr3_2:63564413-63564432 | Msa0416660:CDS | 35.0% | |
| ACAGGAACAACAAGATTCTA+TGG | + | chr3_2:63564437-63564456 | Msa0416660:CDS | 35.0% | |
| TATGGCTAAACTGAAAACTG+AGG | + | chr3_2:63564455-63564474 | Msa0416660:CDS | 35.0% | |
| TAAACTGAAAACTGAGGACA+TGG | + | chr3_2:63564461-63564480 | Msa0416660:CDS | 35.0% | |
| GTTCTATGGCAGAAAGTAAA+TGG | + | chr3_2:63564551-63564570 | Msa0416660:intron | 35.0% | |
| GAAAGTAAATGGTGAAGAGA+TGG | + | chr3_2:63564562-63564581 | Msa0416660:intron | 35.0% | |
| CATTTGATTACAATCCATGG+TGG | + | chr3_2:63564641-63564660 | Msa0416660:CDS | 35.0% | |
| AAATCTGCTTCTGAATCTCA+TGG | + | chr3_2:63564746-63564765 | Msa0416660:CDS | 35.0% | |
| TGATAGGTACCTAATTAGGT+CGG | - | chr3_2:63564774-63564793 | None:intergenic | 35.0% | |
| GCTGAATTAAACCTACCATA+AGG | + | chr3_2:63564814-63564833 | Msa0416660:intron | 35.0% | |
| ACAATGTATGTCAAGCCTTA+TGG | - | chr3_2:63564832-63564851 | None:intergenic | 35.0% | |
| ! | GCAGGTTAGAATTGTGTTTT+TGG | + | chr3_2:63564978-63564997 | Msa0416660:intron | 35.0% |
| ATGCCAATGCTTGAAAATCA+TGG | - | chr3_2:63565193-63565212 | None:intergenic | 35.0% | |
| TAAAAGGTTCTCTAATAGGC+TGG | - | chr3_2:63565234-63565253 | None:intergenic | 35.0% | |
| CATAAGAAACCATAATGTCG+TGG | + | chr3_2:63565298-63565317 | Msa0416660:intron | 35.0% | |
| !!! | TTTTTTTTATGACAGGGGCA+TGG | + | chr3_2:63565374-63565393 | Msa0416660:intron | 35.0% |
| ! | AGGCTTTTGATCCTAAAAGA+AGG | + | chr3_2:63565495-63565514 | Msa0416660:CDS | 35.0% |
| ! | TTCACTGGAAACCTTCTTTT+AGG | - | chr3_2:63565509-63565528 | None:intergenic | 35.0% |
| GTCAAAGTATACAAAGGAGT+TGG | + | chr3_2:63565621-63565640 | Msa0416660:CDS | 35.0% | |
| CAAGTGTAAAGATGGACAAT+TGG | + | chr3_2:63565827-63565846 | Msa0416660:CDS | 35.0% | |
| TGGACAATTGGTATCCTATT+TGG | + | chr3_2:63565839-63565858 | Msa0416660:CDS | 35.0% | |
| GGACAATTGGTATCCTATTT+GGG | + | chr3_2:63565840-63565859 | Msa0416660:CDS | 35.0% | |
| CTTTATCTTTCACTTCGATC+CGG | - | chr3_2:63565912-63565931 | None:intergenic | 35.0% | |
| ! | AACTCTGTCAAGCTTTTACT+TGG | + | chr3_2:63566036-63566055 | Msa0416660:CDS | 35.0% |
| GCTTCCTTAAGATCTAAAGG+TGG | - | chr3_2:63561680-63561699 | None:intergenic | 40.0% | |
| ! | GATTGGCTCCAAATCCAATA+AGG | - | chr3_2:63561792-63561811 | None:intergenic | 40.0% |
| GTGCATACCTCATCCTTTAA+GGG | - | chr3_2:63561923-63561942 | None:intergenic | 40.0% | |
| AGTGCATACCTCATCCTTTA+AGG | - | chr3_2:63561924-63561943 | None:intergenic | 40.0% | |
| !! | TCATGTTAACTTGTGCCCTT+AGG | + | chr3_2:63562499-63562518 | Msa0416660:intron | 40.0% |
| !! | CATGTTAACTTGTGCCCTTA+GGG | + | chr3_2:63562500-63562519 | Msa0416660:intron | 40.0% |
| ACAAATCTCACACTTTGGTG+GGG | - | chr3_2:63562845-63562864 | None:intergenic | 40.0% | |
| CACAAATCTCACACTTTGGT+GGG | - | chr3_2:63562846-63562865 | None:intergenic | 40.0% | |
| TCACAAATCTCACACTTTGG+TGG | - | chr3_2:63562847-63562866 | None:intergenic | 40.0% | |
| CACTCACAAATCTCACACTT+TGG | - | chr3_2:63562850-63562869 | None:intergenic | 40.0% | |
| CAAAGTGTGAGATTTGTGAG+TGG | + | chr3_2:63562848-63562867 | Msa0416660:intron | 40.0% | |
| ATTCTCCGTATAGAAACCGT+GGG | - | chr3_2:63562917-63562936 | None:intergenic | 40.0% | |
| TATTCTCCGTATAGAAACCG+TGG | - | chr3_2:63562918-63562937 | None:intergenic | 40.0% | |
| ATACGGAGAATAGTCTATCG+CGG | + | chr3_2:63562926-63562945 | Msa0416660:intron | 40.0% | |
| TAAGAGGTTCCTAGTTCAAG+TGG | + | chr3_2:63563038-63563057 | Msa0416660:intron | 40.0% | |
| GTAAACTCACACACACGAAA+TGG | - | chr3_2:63563121-63563140 | None:intergenic | 40.0% | |
| TTCGGTACGTAAGTTCTCAA+TGG | + | chr3_2:63563319-63563338 | Msa0416660:intron | 40.0% | |
| TGGCCATCTTCAACTAAAGA+TGG | + | chr3_2:63563678-63563697 | Msa0416660:CDS | 40.0% | |
| CCACCATCTTTAGTTGAAGA+TGG | - | chr3_2:63563684-63563703 | None:intergenic | 40.0% | |
| CCATCTTCAACTAAAGATGG+TGG | + | chr3_2:63563681-63563700 | Msa0416660:CDS | 40.0% | |
| CGTCATGTATCAGTGCTTAT+AGG | - | chr3_2:63563997-63564016 | None:intergenic | 40.0% | |
| ! | CTATGTGATAGTGTTGTGTC+CGG | - | chr3_2:63564026-63564045 | None:intergenic | 40.0% |
| GCCAACAATCATGTGTCAAA+TGG | + | chr3_2:63564384-63564403 | Msa0416660:CDS | 40.0% | |
| TCGTCTGAAGATGAAACATG+GGG | + | chr3_2:63564414-63564433 | Msa0416660:CDS | 40.0% | |
| TGAAAACTGAGGACATGGTA+AGG | + | chr3_2:63564466-63564485 | Msa0416660:intron | 40.0% | |
| ! | ATCCATGGTGGAAAATCAGA+AGG | + | chr3_2:63564653-63564672 | Msa0416660:CDS | 40.0% |
| ! | TACCTTCTGATTTTCCACCA+TGG | - | chr3_2:63564658-63564677 | None:intergenic | 40.0% |
| GATAGACTAAAAGTTGACGG+CGG | + | chr3_2:63564686-63564705 | Msa0416660:CDS | 40.0% | |
| TTGACGGCGGTAAAGTTAAA+AGG | + | chr3_2:63564699-63564718 | Msa0416660:CDS | 40.0% | |
| ! | TGTATGTCAAGCCTTATGGT+AGG | - | chr3_2:63564828-63564847 | None:intergenic | 40.0% |
| GATTGAACACGTTCTCCTTT+AGG | - | chr3_2:63564898-63564917 | None:intergenic | 40.0% | |
| ! | ATTTTAGGCCACATTTAGGG+TGG | + | chr3_2:63564923-63564942 | Msa0416660:CDS | 40.0% |
| GATGGTTGCATTCAATATGC+AGG | + | chr3_2:63564960-63564979 | Msa0416660:CDS | 40.0% | |
| !! | TCAAGCATTGGCATATTGCA+TGG | + | chr3_2:63565199-63565218 | Msa0416660:intron | 40.0% |
| AAATCACTCCGATTGATGCA+AGG | + | chr3_2:63565398-63565417 | Msa0416660:CDS | 40.0% | |
| AATCACTCCGATTGATGCAA+GGG | + | chr3_2:63565399-63565418 | Msa0416660:CDS | 40.0% | |
| TGAACATCCCTTGCATCAAT+CGG | - | chr3_2:63565409-63565428 | None:intergenic | 40.0% | |
| AAGTATACAAAGGAGTTGGC+TGG | + | chr3_2:63565625-63565644 | Msa0416660:CDS | 40.0% | |
| CTAACCTTTGTGTAGAAGTC+TGG | - | chr3_2:63565693-63565712 | None:intergenic | 40.0% | |
| !! | CCATGTCTTAGCTCTGATAT+AGG | - | chr3_2:63565973-63565992 | None:intergenic | 40.0% |
| CCTATATCAGAGCTAAGACA+TGG | + | chr3_2:63565970-63565989 | Msa0416660:CDS | 40.0% | |
| CAGAGCTAAGACATGGATTT+CGG | + | chr3_2:63565977-63565996 | Msa0416660:CDS | 40.0% | |
| !! | TGTTGCTTTGTGTGACAGAA+AGG | + | chr3_2:63566002-63566021 | Msa0416660:CDS | 40.0% |
| ! | GTTGCTTTGTGTGACAGAAA+GGG | + | chr3_2:63566003-63566022 | Msa0416660:CDS | 40.0% |
| GTTCATCCAGATATGGGAAT+CGG | + | chr3_2:63566095-63566114 | Msa0416660:three_prime_UTR | 40.0% | |
| CAGTATTGCAGGACTCAGTT+TGG | + | chr3_2:63561856-63561875 | Msa0416660:CDS | 45.0% | |
| CAATGGTCCCTTAAAGGATG+AGG | + | chr3_2:63561913-63561932 | Msa0416660:CDS | 45.0% | |
| TGCCCTTAAGGCACAAGATA+AGG | - | chr3_2:63562643-63562662 | None:intergenic | 45.0% | |
| TTCTCCGTATAGAAACCGTG+GGG | - | chr3_2:63562916-63562935 | None:intergenic | 45.0% | |
| AACTCACACACACGAAATGG+AGG | - | chr3_2:63563118-63563137 | None:intergenic | 45.0% | |
| GGTACGTAAGTTCTCAATGG+AGG | + | chr3_2:63563322-63563341 | Msa0416660:intron | 45.0% | |
| GGACACAATTCCTACCTTAC+TGG | + | chr3_2:63563573-63563592 | Msa0416660:CDS | 45.0% | |
| TTTGGTTAGTGCAACTGGAG+TGG | - | chr3_2:63563837-63563856 | None:intergenic | 45.0% | |
| !!! | CCTGAAGTTTTGGTGTTAGG+TGG | - | chr3_2:63563928-63563947 | None:intergenic | 45.0% |
| CCACCTAACACCAAAACTTC+AGG | + | chr3_2:63563925-63563944 | Msa0416660:CDS | 45.0% | |
| TCAGTTTGAGGATGCTCCTT+TGG | - | chr3_2:63564360-63564379 | None:intergenic | 45.0% | |
| !! | AAGGAGCATCCTCAAACTGA+TGG | + | chr3_2:63564360-63564379 | Msa0416660:CDS | 45.0% |
| TTGTTGGCACCATCAGTTTG+AGG | - | chr3_2:63564372-63564391 | None:intergenic | 45.0% | |
| TGAAGATGAAACATGGGGAC+AGG | + | chr3_2:63564419-63564438 | Msa0416660:CDS | 45.0% | |
| CTGAGGACATGGTAAGGAAT+AGG | + | chr3_2:63564472-63564491 | Msa0416660:intron | 45.0% | |
| CCATACATCCACCCTAAATG+TGG | - | chr3_2:63564934-63564953 | None:intergenic | 45.0% | |
| ! | CCACATTTAGGGTGGATGTA+TGG | + | chr3_2:63564931-63564950 | Msa0416660:CDS | 45.0% |
| CAAGGGATGTTCAAAGCGAA+TGG | + | chr3_2:63565416-63565435 | Msa0416660:CDS | 45.0% | |
| GGATGTTCAAAGCGAATGGA+GGG | + | chr3_2:63565420-63565439 | Msa0416660:CDS | 45.0% | |
| TATACAAAGGAGTTGGCTGG+AGG | + | chr3_2:63565628-63565647 | Msa0416660:CDS | 45.0% | |
| TCCACCAGACTTCTACACAA+AGG | + | chr3_2:63565686-63565705 | Msa0416660:CDS | 45.0% | |
| ACCTTTGTGTAGAAGTCTGG+TGG | - | chr3_2:63565690-63565709 | None:intergenic | 45.0% | |
| GATCAATCTGATTGCGTGAC+AGG | + | chr3_2:63565762-63565781 | Msa0416660:intron | 45.0% | |
| ACAGGTTTGTATTGCTGGAG+TGG | + | chr3_2:63565780-63565799 | Msa0416660:intron | 45.0% | |
| CAGGTTTGTATTGCTGGAGT+GGG | + | chr3_2:63565781-63565800 | Msa0416660:intron | 45.0% | |
| TCGAACTCTTCGTCCCAAAT+AGG | - | chr3_2:63565856-63565875 | None:intergenic | 45.0% | |
| !! | CGAGTTCTGGAACAGTCAAT+TGG | - | chr3_2:63565882-63565901 | None:intergenic | 45.0% |
| ! | AAGGGATCAGACGATTTTGC+TGG | + | chr3_2:63565934-63565953 | Msa0416660:CDS | 45.0% |
| AGACGTCGTTCATCCAGATA+TGG | + | chr3_2:63566088-63566107 | Msa0416660:exon | 45.0% | |
| GACGTCGTTCATCCAGATAT+GGG | + | chr3_2:63566089-63566108 | Msa0416660:exon | 45.0% | |
| GTGAATCCGATTCCCATATC+TGG | - | chr3_2:63566104-63566123 | None:intergenic | 45.0% | |
| !!! | ATTTCATATTATTATTTTTT+TGG | - | chr3_2:63565131-63565150 | None:intergenic | 5.0% |
| !! | AAAAAAATAATAATATGAAA+TGG | + | chr3_2:63565130-63565149 | Msa0416660:intron | 5.0% |
| TGCAGGCCACATTGCTCAAA+TGG | - | chr3_2:63562082-63562101 | None:intergenic | 50.0% | |
| !! | ACACACGAAATGGAGGTGTC+GGG | - | chr3_2:63563111-63563130 | None:intergenic | 50.0% |
| ! | CACACACGAAATGGAGGTGT+CGG | - | chr3_2:63563112-63563131 | None:intergenic | 50.0% |
| CTGATACATGACGCAGACAC+CGG | + | chr3_2:63564004-63564023 | Msa0416660:intron | 50.0% | |
| TTTCAGACACCATCACGTGC+CGG | + | chr3_2:63564088-63564107 | Msa0416660:intron | 50.0% | |
| GTTTGAGGATGCTCCTTTGG+TGG | - | chr3_2:63564357-63564376 | None:intergenic | 50.0% | |
| CTCATGGAGCCGACCTAATT+AGG | + | chr3_2:63564762-63564781 | Msa0416660:CDS | 50.0% | |
| GTGGATGTATGGAGCTCAGA+TGG | + | chr3_2:63564942-63564961 | Msa0416660:CDS | 50.0% | |
| GGGATGTTCAAAGCGAATGG+AGG | + | chr3_2:63565419-63565438 | Msa0416660:CDS | 50.0% | |
| TTCAAAGCGAATGGAGGGTG+CGG | + | chr3_2:63565425-63565444 | Msa0416660:CDS | 50.0% | |
| GCGTGACAGGTTTGTATTGC+TGG | + | chr3_2:63565775-63565794 | Msa0416660:intron | 50.0% | |
| TCACACTTTGGTGGGGTACG+TGG | - | chr3_2:63562838-63562857 | None:intergenic | 55.0% | |
| CTATTATCCCACACGCCCCA+CGG | + | chr3_2:63562898-63562917 | Msa0416660:intron | 55.0% | |
| ATAGAAACCGTGGGGCGTGT+GGG | - | chr3_2:63562908-63562927 | None:intergenic | 55.0% | |
| TATAGAAACCGTGGGGCGTG+TGG | - | chr3_2:63562909-63562928 | None:intergenic | 55.0% | |
| CACGCCCCACGGTTTCTATA+CGG | + | chr3_2:63562909-63562928 | Msa0416660:intron | 55.0% | |
| CGGAGAATAGTCTATCGCGG+TGG | + | chr3_2:63562929-63562948 | Msa0416660:intron | 55.0% | |
| GCATATTGTCCGGCACGTGA+TGG | - | chr3_2:63564100-63564119 | None:intergenic | 55.0% | |
| TGTATTCACGCGCACCTTGC+TGG | - | chr3_2:63564619-63564638 | None:intergenic | 55.0% | |
| GCGGAATGGCCACGACATTA+TGG | - | chr3_2:63565310-63565329 | None:intergenic | 55.0% | |
| TTCCAGAACTCGCGTTGCTC+CGG | + | chr3_2:63565890-63565909 | Msa0416660:CDS | 55.0% | |
| ATCCGGAGCAACGCGAGTTC+TGG | - | chr3_2:63565895-63565914 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 63561100 | 63566218 | 63561100 | ID=Msa0416660;Name=Msa0416660 |
| chr3_2 | mRNA | 63561100 | 63566218 | 63561100 | ID=Msa0416660-mRNA-1;Parent=Msa0416660;Name=Msa0416660-mRNA-1;_AED=0.08;_eAED=0.08;_QI=333|0.8|0.90|0.90|0.9|0.81|11|129|619 |
| chr3_2 | exon | 63561100 | 63561270 | 63561100 | ID=Msa0416660-mRNA-1:exon:13844;Parent=Msa0416660-mRNA-1 |
| chr3_2 | exon | 63561449 | 63561934 | 63561449 | ID=Msa0416660-mRNA-1:exon:13845;Parent=Msa0416660-mRNA-1 |
| chr3_2 | exon | 63563525 | 63563724 | 63563525 | ID=Msa0416660-mRNA-1:exon:13846;Parent=Msa0416660-mRNA-1 |
| chr3_2 | exon | 63563826 | 63563961 | 63563826 | ID=Msa0416660-mRNA-1:exon:13847;Parent=Msa0416660-mRNA-1 |
| chr3_2 | exon | 63564094 | 63564171 | 63564094 | ID=Msa0416660-mRNA-1:exon:13848;Parent=Msa0416660-mRNA-1 |
| chr3_2 | exon | 63564246 | 63564482 | 63564246 | ID=Msa0416660-mRNA-1:exon:13849;Parent=Msa0416660-mRNA-1 |
| chr3_2 | exon | 63564563 | 63564783 | 63564563 | ID=Msa0416660-mRNA-1:exon:13850;Parent=Msa0416660-mRNA-1 |
| chr3_2 | exon | 63564864 | 63564981 | 63564864 | ID=Msa0416660-mRNA-1:exon:13851;Parent=Msa0416660-mRNA-1 |
| chr3_2 | exon | 63565389 | 63565541 | 63565389 | ID=Msa0416660-mRNA-1:exon:13852;Parent=Msa0416660-mRNA-1 |
| chr3_2 | exon | 63565621 | 63565707 | 63565621 | ID=Msa0416660-mRNA-1:exon:13853;Parent=Msa0416660-mRNA-1 |
| chr3_2 | exon | 63565784 | 63566218 | 63565784 | ID=Msa0416660-mRNA-1:exon:13854;Parent=Msa0416660-mRNA-1 |
| chr3_2 | five_prime_UTR | 63561100 | 63561270 | 63561100 | ID=Msa0416660-mRNA-1:five_prime_utr;Parent=Msa0416660-mRNA-1 |
| chr3_2 | five_prime_UTR | 63561449 | 63561610 | 63561449 | ID=Msa0416660-mRNA-1:five_prime_utr;Parent=Msa0416660-mRNA-1 |
| chr3_2 | CDS | 63561611 | 63561934 | 63561611 | ID=Msa0416660-mRNA-1:cds;Parent=Msa0416660-mRNA-1 |
| chr3_2 | CDS | 63563525 | 63563724 | 63563525 | ID=Msa0416660-mRNA-1:cds;Parent=Msa0416660-mRNA-1 |
| chr3_2 | CDS | 63563826 | 63563961 | 63563826 | ID=Msa0416660-mRNA-1:cds;Parent=Msa0416660-mRNA-1 |
| chr3_2 | CDS | 63564094 | 63564171 | 63564094 | ID=Msa0416660-mRNA-1:cds;Parent=Msa0416660-mRNA-1 |
| chr3_2 | CDS | 63564246 | 63564482 | 63564246 | ID=Msa0416660-mRNA-1:cds;Parent=Msa0416660-mRNA-1 |
| chr3_2 | CDS | 63564563 | 63564783 | 63564563 | ID=Msa0416660-mRNA-1:cds;Parent=Msa0416660-mRNA-1 |
| chr3_2 | CDS | 63564864 | 63564981 | 63564864 | ID=Msa0416660-mRNA-1:cds;Parent=Msa0416660-mRNA-1 |
| chr3_2 | CDS | 63565389 | 63565541 | 63565389 | ID=Msa0416660-mRNA-1:cds;Parent=Msa0416660-mRNA-1 |
| chr3_2 | CDS | 63565621 | 63565707 | 63565621 | ID=Msa0416660-mRNA-1:cds;Parent=Msa0416660-mRNA-1 |
| chr3_2 | CDS | 63565784 | 63566089 | 63565784 | ID=Msa0416660-mRNA-1:cds;Parent=Msa0416660-mRNA-1 |
| chr3_2 | three_prime_UTR | 63566090 | 63566218 | 63566090 | ID=Msa0416660-mRNA-1:three_prime_utr;Parent=Msa0416660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
