AlfalfaGEDB | Msa0508880

M. sativa cultivar zhongmu-4 / Msa0508880

KEGG: K05857
GO: -
PFAM: PF00388.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0508880	XP_003600894.1	90.953	619	30	1	1	619	1	593	0.0	1129

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0508880	sp\|Q8GV43\|PLCD6_ARATH	50.238	631	254	11	7	614	20	613	0.0	604

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0508880	G7JB93	90.953	619	30	1	1	619	1	593	0.0	1129

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007990	Msa0508880	0.805484	1.305582e-49	-8.615850e-47
Msa0056450	Msa0508880	0.811720	6.078433e-51	-8.615850e-47
Msa0089980	Msa0508880	0.816940	4.267841e-52	-8.615850e-47
Msa0090010	Msa0508880	0.817003	4.130540e-52	-8.615850e-47
Msa0092410	Msa0508880	0.802631	5.119922e-49	-8.615850e-47
Msa0103250	Msa0508880	0.812712	3.693457e-51	-8.615850e-47
Msa0104670	Msa0508880	0.802859	4.592407e-49	-8.615850e-47
Msa0106620	Msa0508880	0.825209	5.310977e-54	-8.615850e-47
Msa0106710	Msa0508880	0.815503	8.941087e-52	-8.615850e-47
Msa0112270	Msa0508880	0.803181	3.941383e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0508880	MtrunA17_Chr3g0113471	90.953	619	30	1	1	619	1	593	0.0	1129
Msa0508880	MtrunA17_Chr3g0113521	81.452	620	86	3	1	619	1	592	0.0	1019
Msa0508880	MtrunA17_Chr5g0437041	56.571	624	227	10	7	614	12	607	0.0	670
Msa0508880	MtrunA17_Chr5g0437061	58.286	525	161	7	113	613	1	491	0.0	595
Msa0508880	MtrunA17_Chr5g0430181	50.415	603	251	10	24	611	22	591	0.0	590
Msa0508880	MtrunA17_Chr5g0437081	49.357	622	268	10	1	611	1	586	0.0	578
Msa0508880	MtrunA17_Chr3g0113531	47.987	621	280	9	2	613	6	592	0.0	552
Msa0508880	MtrunA17_Chr3g0112551	48.529	612	263	8	12	613	2	571	0.0	548
Msa0508880	MtrunA17_Chr5g0430191	44.300	614	277	14	3	611	17	570	1.88e-164	482
Msa0508880	MtrunA17_Chr5g0437051	42.857	91	48	1	23	109	18	108	1.21e-17	79.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0508880	AT2G40116.1	50.238	631	254	11	7	614	20	613	0.0	604
Msa0508880	AT5G58690.3	48.671	602	269	6	13	613	15	577	0.0	565
Msa0508880	AT5G58690.1	48.671	602	269	6	13	613	15	577	0.0	565
Msa0508880	AT5G58690.2	48.911	597	265	6	18	613	1	558	0.0	564
Msa0508880	AT3G08510.2	49.186	614	269	11	1	609	1	576	0.0	563
Msa0508880	AT3G08510.1	49.186	614	269	11	1	609	1	576	0.0	563
Msa0508880	AT5G58700.3	47.403	616	285	7	7	613	11	596	0.0	556
Msa0508880	AT5G58700.1	47.403	616	285	7	7	613	11	596	0.0	556
Msa0508880	AT3G55940.1	47.910	622	268	12	1	609	1	579	0.0	554
Msa0508880	AT5G58700.2	50.973	514	214	6	109	613	4	488	1.67e-176	510

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Find 132 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTTGATTACAATCCA+TGG	0.524741	3_4:+57103175	Msa0508880:CDS
AAACATTTGGTTAGTGCAAC+TGG	0.337432	3_4:-57102376	None:intergenic
AAAGATAGACTAAAAGTTGA+TGG	0.432276	3_4:+57103220	Msa0508880:CDS
AAAGATTCCTTAAGATCTAA+AGG	0.489446	3_4:-57100368	None:intergenic
AAATCACTCCGGTTGATGCA+AGG	0.554660	3_4:+57103932	Msa0508880:CDS
AAATCTGCTTCTGAGTCTCA+TGG	0.528727	3_4:+57103283	Msa0508880:CDS
AAATTGATTTCCAGTAAGGT+AGG	0.573386	3_4:-57102120	None:intergenic
AAATTGCACCTTATTGGATT+TGG	0.270742	3_4:+57100469	Msa0508880:CDS
AAGGAGCATCCTCAAACTGA+TGG	0.641373	3_4:+57102897	Msa0508880:CDS
AAGTATATAAAGGAGTTGGT+TGG	0.554621	3_4:+57104160	Msa0508880:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATATTTATGCATGAGATCG+AGG	-	chr3_4:57100064-57100083	None:intergenic	30.0%
ACATAGAACAACACTTTCAT+AGG	+	chr3_4:57100115-57100134	Msa0508880:five_prime_UTR	30.0%
TATAAACTCTCTTCCACAAA+AGG	+	chr3_4:57100207-57100226	Msa0508880:five_prime_UTR	30.0%
ATAAACTCTCTTCCACAAAA+GGG	+	chr3_4:57100208-57100227	Msa0508880:five_prime_UTR	30.0%
TATTTGCTCATTCAAAACAG+AGG	+	chr3_4:57100241-57100260	Msa0508880:five_prime_UTR	30.0%
TGGTGAAAATTACATGTCAA+AGG	+	chr3_4:57100406-57100425	Msa0508880:CDS	30.0%
AGAACAAAATTGCACCTTAT+TGG	+	chr3_4:57100463-57100482	Msa0508880:CDS	30.0%
AAATTGCACCTTATTGGATT+TGG	+	chr3_4:57100469-57100488	Msa0508880:CDS	30.0%
AAAAAACCATTTGAGCAATG+TGG	+	chr3_4:57100761-57100780	Msa0508880:intron	30.0%
ATATACTAACTGTAAAGTGC+AGG	-	chr3_4:57100787-57100806	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	57099966	57104765	57099966	ID=Msa0508880;Name=Msa0508880
chr3_4	mRNA	57099966	57104765	57099966	ID=Msa0508880-mRNA-1;Parent=Msa0508880;Name=Msa0508880-mRNA-1;_AED=0.09;_eAED=0.09;_QI=333\|0.77\|0.9\|0.9\|1\|1\|10\|134\|619
chr3_4	exon	57099966	57100622	57099966	ID=Msa0508880-mRNA-1:exon:12971;Parent=Msa0508880-mRNA-1
chr3_4	exon	57102062	57102261	57102062	ID=Msa0508880-mRNA-1:exon:12972;Parent=Msa0508880-mRNA-1
chr3_4	exon	57102363	57102498	57102363	ID=Msa0508880-mRNA-1:exon:12973;Parent=Msa0508880-mRNA-1
chr3_4	exon	57102631	57102708	57102631	ID=Msa0508880-mRNA-1:exon:12974;Parent=Msa0508880-mRNA-1
chr3_4	exon	57102783	57103019	57102783	ID=Msa0508880-mRNA-1:exon:12975;Parent=Msa0508880-mRNA-1
chr3_4	exon	57103100	57103320	57103100	ID=Msa0508880-mRNA-1:exon:12976;Parent=Msa0508880-mRNA-1
chr3_4	exon	57103414	57103531	57103414	ID=Msa0508880-mRNA-1:exon:12977;Parent=Msa0508880-mRNA-1
chr3_4	exon	57103923	57104075	57103923	ID=Msa0508880-mRNA-1:exon:12978;Parent=Msa0508880-mRNA-1
chr3_4	exon	57104156	57104242	57104156	ID=Msa0508880-mRNA-1:exon:12979;Parent=Msa0508880-mRNA-1
chr3_4	exon	57104326	57104765	57104326	ID=Msa0508880-mRNA-1:exon:12980;Parent=Msa0508880-mRNA-1
chr3_4	five_prime_UTR	57099966	57100298	57099966	ID=Msa0508880-mRNA-1:five_prime_utr;Parent=Msa0508880-mRNA-1
chr3_4	CDS	57100299	57100622	57100299	ID=Msa0508880-mRNA-1:cds;Parent=Msa0508880-mRNA-1
chr3_4	CDS	57102062	57102261	57102062	ID=Msa0508880-mRNA-1:cds;Parent=Msa0508880-mRNA-1
chr3_4	CDS	57102363	57102498	57102363	ID=Msa0508880-mRNA-1:cds;Parent=Msa0508880-mRNA-1
chr3_4	CDS	57102631	57102708	57102631	ID=Msa0508880-mRNA-1:cds;Parent=Msa0508880-mRNA-1
chr3_4	CDS	57102783	57103019	57102783	ID=Msa0508880-mRNA-1:cds;Parent=Msa0508880-mRNA-1
chr3_4	CDS	57103100	57103320	57103100	ID=Msa0508880-mRNA-1:cds;Parent=Msa0508880-mRNA-1
chr3_4	CDS	57103414	57103531	57103414	ID=Msa0508880-mRNA-1:cds;Parent=Msa0508880-mRNA-1
chr3_4	CDS	57103923	57104075	57103923	ID=Msa0508880-mRNA-1:cds;Parent=Msa0508880-mRNA-1
chr3_4	CDS	57104156	57104242	57104156	ID=Msa0508880-mRNA-1:cds;Parent=Msa0508880-mRNA-1
chr3_4	CDS	57104326	57104631	57104326	ID=Msa0508880-mRNA-1:cds;Parent=Msa0508880-mRNA-1
chr3_4	three_prime_UTR	57104632	57104765	57104632	ID=Msa0508880-mRNA-1:three_prime_utr;Parent=Msa0508880-mRNA-1

Gene Sequence

>Msa0508880

ATGAAAAAAAAGATCATCAAGTTGTTAAGCTTTTTGACCAAAAAAGGTAAAGTGAATAAGGAAGAACCACCTTTAGATCTTAAGGAATCTTTTTCCAAGTTTGCAAATGGTGAAAATTACATGTCAAAGGATCAACTACTTAGATTCATGGTGGAATATCAAAGAGAACAAAATTGCACCTTATTGGATTTGGAGCCAATCATTGAAAAGGTTTTGAAAGTGGAAAGTTCTAACAATGAAACTAGCAGTATTGCAGGACTCAGTTTGGATGACTTCATAGATTTTCTGCTTCTAGATGATTTCAATGGTCCCTTAAAGGATGAGGTACATCATGATATGGAAGCTCCCTTGTCACATTATTTCATGTATACAGGACACAATTCCTACCTTACTGGAAATCAATTTACTAGTGAGAGCAGTGATAAACCAATTATAGAGGCTTTGAAACAAGGTGTTCGAGTAATTGAACTTGATTTATGGCCATCTTCAACTAAAGATGGTGGTATTAAAGTAGTTCATGGAAAGACTCTCACCACTCCAGTTGCACTAACCAAATGTTTGGAAGCCATAAAAGAATATGCTTTTGTCAAATCTGAATTTCCAGTGATTCTAACTTTAGAAGACCACCTAACACCAAAACTTCAGGATAACTTTGCACAAACACCATCACGTGCCGGACAATATGCATATCTTCAATCTAAAGCATCAGTTCTACAAAGCTTAACCATCTCCTATCTAATGGCAAATAAAATATTTGGAGAAATGCTTTATTGTCCTACGACAGATTGTATAACAGAATTTCCCTCACCAGCATCACTAAAAAATATGGTACTTATATCAACTAAACCACCAAAGGAGCATCCTCAAACTGATGGTGCCAACAATCATGTGTCAAATGGAAGTGAATCGTCTGCAGATGAAACATGGGGACAGGAACAACAAGATTCTATGGCTAAACTGAAAACTGAGGACATGAAAGTAAGTGGTGAAGAGATGGAAGATATTAGTACAAGTTATTACAAATCAAACCAGCAAGGTGCACGTGAATACAAACATTTGATTACAATCCATGGTGGAAAATCAGAAGGTACTATGAAAGATAGACTAAAAGTTGATGGTGGTAAAGTTAGAAGGCTAAGTTTGAGTGAGAAAAAACTCAAATCTGCTTCTGAGTCTCATGGAGCCGACCTAATTAGGTTCACACAGAAAAATATCCTAAGAATTTATCCTAAAGGAGAACGTGTTCAATCCACAAATTTTAGGCCACATTTAGGGTGGATGTATGGAGCTCAGATGGTTGCATTCAATATGCAGGGGCATGGCAAATCACTCCGGTTGATGCAAGGGATGTTCAAAGCGAATGGAGGGTGCGGTTATGTGAAAAAACCTGAATTTCTAATTCAAGAAATTGTACATAATGAGGCTTTTGATCCTAAAAGAAGGTTTCCAGTGAAGCAGATATTAAAAGTAAAAGTATATAAAGGAGTTGGTTGGATTTCAGATTTTAGTCGAACGCACTTCGATCGATTCTCTCCACCAGACTTTTACACAAAGGTTTGTATTGCTGGAGTGGGAGCTGATAGTGTGAAGAAGAAAACAAGTGTAAAGATGGACAATTGGTATCCTATTTGGGACGAAGAGTTCGAATTCCAATTGACTGTTCCAGAGCTCGCGTTGCTCCGGATCGAAGTGAAAGATAAAGATAAGGGATCAGATGATTTTGCTGGACAAACTTGTTTGCCTGTATCAGAGCTAAGACATGGATTTCGGTCTGTTGCTTTGTGTGACAGAAAGGGAAAAAAATATAACTCTGTCAAGCTTTTACTTGGATTCCACCTTGAAACTTTAAATACATTGTAG

Protein sequence

>Msa0508880

MKKKIIKLLSFLTKKGKVNKEEPPLDLKESFSKFANGENYMSKDQLLRFMVEYQREQNCTLLDLEPIIEKVLKVESSNNETSSIAGLSLDDFIDFLLLDDFNGPLKDEVHHDMEAPLSHYFMYTGHNSYLTGNQFTSESSDKPIIEALKQGVRVIELDLWPSSTKDGGIKVVHGKTLTTPVALTKCLEAIKEYAFVKSEFPVILTLEDHLTPKLQDNFAQTPSRAGQYAYLQSKASVLQSLTISYLMANKIFGEMLYCPTTDCITEFPSPASLKNMVLISTKPPKEHPQTDGANNHVSNGSESSADETWGQEQQDSMAKLKTEDMKVSGEEMEDISTSYYKSNQQGAREYKHLITIHGGKSEGTMKDRLKVDGGKVRRLSLSEKKLKSASESHGADLIRFTQKNILRIYPKGERVQSTNFRPHLGWMYGAQMVAFNMQGHGKSLRLMQGMFKANGGCGYVKKPEFLIQEIVHNEAFDPKRRFPVKQILKVKVYKGVGWISDFSRTHFDRFSPPDFYTKVCIAGVGADSVKKKTSVKMDNWYPIWDEEFEFQLTVPELALLRIEVKDKDKGSDDFAGQTCLPVSELRHGFRSVALCDRKGKKYNSVKLLLGFHLETLNTL*