Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508880 | XP_003600894.1 | 90.953 | 619 | 30 | 1 | 1 | 619 | 1 | 593 | 0.0 | 1129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508880 | sp|Q8GV43|PLCD6_ARATH | 50.238 | 631 | 254 | 11 | 7 | 614 | 20 | 613 | 0.0 | 604 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508880 | G7JB93 | 90.953 | 619 | 30 | 1 | 1 | 619 | 1 | 593 | 0.0 | 1129 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007990 | Msa0508880 | 0.805484 | 1.305582e-49 | -8.615850e-47 |
| Msa0056450 | Msa0508880 | 0.811720 | 6.078433e-51 | -8.615850e-47 |
| Msa0089980 | Msa0508880 | 0.816940 | 4.267841e-52 | -8.615850e-47 |
| Msa0090010 | Msa0508880 | 0.817003 | 4.130540e-52 | -8.615850e-47 |
| Msa0092410 | Msa0508880 | 0.802631 | 5.119922e-49 | -8.615850e-47 |
| Msa0103250 | Msa0508880 | 0.812712 | 3.693457e-51 | -8.615850e-47 |
| Msa0104670 | Msa0508880 | 0.802859 | 4.592407e-49 | -8.615850e-47 |
| Msa0106620 | Msa0508880 | 0.825209 | 5.310977e-54 | -8.615850e-47 |
| Msa0106710 | Msa0508880 | 0.815503 | 8.941087e-52 | -8.615850e-47 |
| Msa0112270 | Msa0508880 | 0.803181 | 3.941383e-49 | -8.615850e-47 |
| Msa0125650 | Msa0508880 | 0.807581 | 4.714565e-50 | -8.615850e-47 |
| Msa0149300 | Msa0508880 | 0.806158 | 9.422239e-50 | -8.615850e-47 |
| Msa0170030 | Msa0508880 | 0.805016 | 1.635888e-49 | -8.615850e-47 |
| Msa0183760 | Msa0508880 | 0.807080 | 6.019391e-50 | -8.615850e-47 |
| Msa0187030 | Msa0508880 | 0.818960 | 1.492385e-52 | -8.615850e-47 |
| Msa0187830 | Msa0508880 | 0.803088 | 4.118097e-49 | -8.615850e-47 |
| Msa0204840 | Msa0508880 | 0.802273 | 6.067638e-49 | -8.615850e-47 |
| Msa0217700 | Msa0508880 | 0.829577 | 4.761110e-55 | -8.615850e-47 |
| Msa0225220 | Msa0508880 | 0.825134 | 5.531108e-54 | -8.615850e-47 |
| Msa0237210 | Msa0508880 | 0.813911 | 2.014130e-51 | -8.615850e-47 |
| Msa0369230 | Msa0508880 | 0.931306 | 4.589727e-94 | -8.615850e-47 |
| Msa0382370 | Msa0508880 | 0.808408 | 3.143148e-50 | -8.615850e-47 |
| Msa0416660 | Msa0508880 | 0.836748 | 7.801673e-57 | -8.615850e-47 |
| Msa0430750 | Msa0508880 | 0.801141 | 1.035822e-48 | -8.615850e-47 |
| Msa0432160 | Msa0508880 | 0.835556 | 1.566920e-56 | -8.615850e-47 |
| Msa0432670 | Msa0508880 | 0.806582 | 7.671368e-50 | -8.615850e-47 |
| Msa0443020 | Msa0508880 | 0.808902 | 2.464863e-50 | -8.615850e-47 |
| Msa0450400 | Msa0508880 | -0.801677 | 8.043376e-49 | -8.615850e-47 |
| Msa0463270 | Msa0508880 | 0.897321 | 1.574953e-76 | -8.615850e-47 |
| Msa0468250 | Msa0508880 | 0.801881 | 7.305323e-49 | -8.615850e-47 |
| Msa0476680 | Msa0508880 | 0.840922 | 6.493989e-58 | -8.615850e-47 |
| Msa0240900 | Msa0508880 | 0.824149 | 9.438567e-54 | -8.615850e-47 |
| Msa0241140 | Msa0508880 | 0.802894 | 4.518112e-49 | -8.615850e-47 |
| Msa0244880 | Msa0508880 | 0.812875 | 3.402445e-51 | -8.615850e-47 |
| Msa0264830 | Msa0508880 | 0.801289 | 9.660670e-49 | -8.615850e-47 |
| Msa0269560 | Msa0508880 | 0.812362 | 4.405774e-51 | -8.615850e-47 |
| Msa0274980 | Msa0508880 | 0.822557 | 2.223127e-53 | -8.615850e-47 |
| Msa0302870 | Msa0508880 | 0.804029 | 2.628047e-49 | -8.615850e-47 |
| Msa0305840 | Msa0508880 | 0.816195 | 6.267407e-52 | -8.615850e-47 |
| Msa0315690 | Msa0508880 | 0.818637 | 1.766549e-52 | -8.615850e-47 |
| Msa0317970 | Msa0508880 | 0.827475 | 1.532642e-54 | -8.615850e-47 |
| Msa0340340 | Msa0508880 | 0.801631 | 8.218226e-49 | -8.615850e-47 |
| Msa0342010 | Msa0508880 | 0.826702 | 2.346117e-54 | -8.615850e-47 |
| Msa0344930 | Msa0508880 | 0.801263 | 9.776531e-49 | -8.615850e-47 |
| Msa0485240 | Msa0508880 | 0.804000 | 2.664420e-49 | -8.615850e-47 |
| Msa0506860 | Msa0508880 | 0.841747 | 3.939374e-58 | -8.615850e-47 |
| Msa0508880 | Msa0521010 | 0.842618 | 2.316613e-58 | -8.615850e-47 |
| Msa0508880 | Msa0553200 | 0.813208 | 2.875867e-51 | -8.615850e-47 |
| Msa0508880 | Msa0562570 | 0.800756 | 1.241038e-48 | -8.615850e-47 |
| Msa0508880 | Msa0579660 | 0.819276 | 1.264362e-52 | -8.615850e-47 |
| Msa0508880 | Msa0583360 | -0.808346 | 3.240281e-50 | -8.615850e-47 |
| Msa0508880 | Msa0607320 | 0.830124 | 3.504903e-55 | -8.615850e-47 |
| Msa0508880 | Msa0632370 | 0.806908 | 6.545061e-50 | -8.615850e-47 |
| Msa0508880 | Msa0661320 | 0.807142 | 5.840266e-50 | -8.615850e-47 |
| Msa0508880 | Msa0673120 | 0.800439 | 1.440668e-48 | -8.615850e-47 |
| Msa0508880 | Msa0733010 | 0.845295 | 4.438616e-59 | -8.615850e-47 |
| Msa0508880 | Msa0738240 | 0.804824 | 1.794772e-49 | -8.615850e-47 |
| Msa0508880 | Msa0751260 | 0.823020 | 1.734319e-53 | -8.615850e-47 |
| Msa0508880 | Msa0786980 | 0.823700 | 1.202802e-53 | -8.615850e-47 |
| Msa0508880 | Msa0795070 | 0.814319 | 1.636537e-51 | -8.615850e-47 |
| Msa0508880 | Msa0797770 | 0.815626 | 8.396052e-52 | -8.615850e-47 |
| Msa0508880 | Msa0828240 | 0.805039 | 1.618327e-49 | -8.615850e-47 |
| Msa0508880 | Msa0830230 | 0.804170 | 2.456210e-49 | -8.615850e-47 |
| Msa0508880 | Msa0833530 | 0.812153 | 4.892921e-51 | -8.615850e-47 |
| Msa0508880 | Msa0835230 | 0.810387 | 1.182093e-50 | -8.615850e-47 |
| Msa0508880 | Msa0855870 | 0.811641 | 6.325896e-51 | -8.615850e-47 |
| Msa0508880 | Msa0868160 | 0.803998 | 2.667649e-49 | -8.615850e-47 |
| Msa0508880 | Msa0899970 | 0.830661 | 2.590380e-55 | -8.615850e-47 |
| Msa0508880 | Msa0902830 | 0.805403 | 1.357682e-49 | -8.615850e-47 |
| Msa0508880 | Msa0936390 | 0.807483 | 4.943717e-50 | -8.615850e-47 |
| Msa0508880 | Msa0965080 | 0.829186 | 5.924915e-55 | -8.615850e-47 |
| Msa0508880 | Msa0965290 | 0.840062 | 1.090210e-57 | -8.615850e-47 |
| Msa0508880 | Msa0971650 | 0.817970 | 2.501220e-52 | -8.615850e-47 |
| Msa0508880 | Msa0986510 | 0.801207 | 1.003793e-48 | -8.615850e-47 |
| Msa0508880 | Msa0999680 | 0.843917 | 1.043146e-58 | -8.615850e-47 |
| Msa0508880 | Msa1022820 | 0.800611 | 1.329010e-48 | -8.615850e-47 |
| Msa0508880 | Msa1028280 | 0.807013 | 6.219252e-50 | -8.615850e-47 |
| Msa0508880 | Msa1034500 | 0.844391 | 7.782657e-59 | -8.615850e-47 |
| Msa0508880 | Msa1038080 | 0.810550 | 1.089986e-50 | -8.615850e-47 |
| Msa0508880 | Msa1080960 | 0.813549 | 2.419555e-51 | -8.615850e-47 |
| Msa0508880 | Msa1084640 | 0.807161 | 5.786492e-50 | -8.615850e-47 |
| Msa0508880 | Msa1088410 | 0.821391 | 4.140176e-53 | -8.615850e-47 |
| Msa0508880 | Msa1089450 | 0.823978 | 1.035096e-53 | -8.615850e-47 |
| Msa0508880 | Msa1111380 | 0.839787 | 1.285378e-57 | -8.615850e-47 |
| Msa0508880 | Msa1145810 | 0.817757 | 2.794486e-52 | -8.615850e-47 |
| Msa0508880 | Msa1188180 | 0.823586 | 1.278909e-53 | -8.615850e-47 |
| Msa0508880 | Msa1225860 | -0.812625 | 3.859450e-51 | -8.615850e-47 |
| Msa0508880 | Msa1243870 | 0.814381 | 1.586258e-51 | -8.615850e-47 |
| Msa0508880 | Msa1283740 | 0.830688 | 2.551337e-55 | -8.615850e-47 |
| Msa0508880 | Msa1340200 | 0.806084 | 9.768727e-50 | -8.615850e-47 |
| Msa0508880 | Msa1345810 | 0.831028 | 2.105257e-55 | -8.615850e-47 |
| Msa0508880 | Msa1358240 | 0.803475 | 3.424242e-49 | -8.615850e-47 |
| Msa0508880 | Msa1389880 | 0.809365 | 1.961286e-50 | -8.615850e-47 |
| Msa0508880 | Msa1400340 | 0.810425 | 1.160010e-50 | -8.615850e-47 |
| Msa0508880 | Msa1403710 | 0.813063 | 3.093165e-51 | -8.615850e-47 |
| Msa0508880 | Msa1416730 | 0.802929 | 4.442631e-49 | -8.615850e-47 |
| Msa0508880 | Msa1418240 | 0.803768 | 2.978202e-49 | -8.615850e-47 |
| Msa0508880 | Msa1424630 | 0.800606 | 1.332106e-48 | -8.615850e-47 |
| Msa0508880 | Msa1430550 | 0.821684 | 3.542389e-53 | -8.615850e-47 |
| Msa0508880 | Msa1446780 | 0.804459 | 2.138075e-49 | -8.615850e-47 |
| Msa0508880 | Msa1448560 | 0.804999 | 1.649173e-49 | -8.615850e-47 |
| Msa0508880 | Msa1458340 | 0.804578 | 2.019436e-49 | -8.615850e-47 |
| Msa0508880 | Msa1462360 | 0.802266 | 6.085853e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508880 | MtrunA17_Chr3g0113471 | 90.953 | 619 | 30 | 1 | 1 | 619 | 1 | 593 | 0.0 | 1129 |
| Msa0508880 | MtrunA17_Chr3g0113521 | 81.452 | 620 | 86 | 3 | 1 | 619 | 1 | 592 | 0.0 | 1019 |
| Msa0508880 | MtrunA17_Chr5g0437041 | 56.571 | 624 | 227 | 10 | 7 | 614 | 12 | 607 | 0.0 | 670 |
| Msa0508880 | MtrunA17_Chr5g0437061 | 58.286 | 525 | 161 | 7 | 113 | 613 | 1 | 491 | 0.0 | 595 |
| Msa0508880 | MtrunA17_Chr5g0430181 | 50.415 | 603 | 251 | 10 | 24 | 611 | 22 | 591 | 0.0 | 590 |
| Msa0508880 | MtrunA17_Chr5g0437081 | 49.357 | 622 | 268 | 10 | 1 | 611 | 1 | 586 | 0.0 | 578 |
| Msa0508880 | MtrunA17_Chr3g0113531 | 47.987 | 621 | 280 | 9 | 2 | 613 | 6 | 592 | 0.0 | 552 |
| Msa0508880 | MtrunA17_Chr3g0112551 | 48.529 | 612 | 263 | 8 | 12 | 613 | 2 | 571 | 0.0 | 548 |
| Msa0508880 | MtrunA17_Chr5g0430191 | 44.300 | 614 | 277 | 14 | 3 | 611 | 17 | 570 | 1.88e-164 | 482 |
| Msa0508880 | MtrunA17_Chr5g0437051 | 42.857 | 91 | 48 | 1 | 23 | 109 | 18 | 108 | 1.21e-17 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508880 | AT2G40116.1 | 50.238 | 631 | 254 | 11 | 7 | 614 | 20 | 613 | 0.0 | 604 |
| Msa0508880 | AT5G58690.3 | 48.671 | 602 | 269 | 6 | 13 | 613 | 15 | 577 | 0.0 | 565 |
| Msa0508880 | AT5G58690.1 | 48.671 | 602 | 269 | 6 | 13 | 613 | 15 | 577 | 0.0 | 565 |
| Msa0508880 | AT5G58690.2 | 48.911 | 597 | 265 | 6 | 18 | 613 | 1 | 558 | 0.0 | 564 |
| Msa0508880 | AT3G08510.2 | 49.186 | 614 | 269 | 11 | 1 | 609 | 1 | 576 | 0.0 | 563 |
| Msa0508880 | AT3G08510.1 | 49.186 | 614 | 269 | 11 | 1 | 609 | 1 | 576 | 0.0 | 563 |
| Msa0508880 | AT5G58700.3 | 47.403 | 616 | 285 | 7 | 7 | 613 | 11 | 596 | 0.0 | 556 |
| Msa0508880 | AT5G58700.1 | 47.403 | 616 | 285 | 7 | 7 | 613 | 11 | 596 | 0.0 | 556 |
| Msa0508880 | AT3G55940.1 | 47.910 | 622 | 268 | 12 | 1 | 609 | 1 | 579 | 0.0 | 554 |
| Msa0508880 | AT5G58700.2 | 50.973 | 514 | 214 | 6 | 109 | 613 | 4 | 488 | 1.67e-176 | 510 |
| Msa0508880 | AT3G08510.4 | 46.091 | 614 | 259 | 12 | 1 | 609 | 1 | 547 | 5.44e-173 | 503 |
| Msa0508880 | AT3G08510.3 | 46.091 | 614 | 259 | 12 | 1 | 609 | 1 | 547 | 5.44e-173 | 503 |
| Msa0508880 | AT5G58670.1 | 45.942 | 616 | 271 | 13 | 3 | 614 | 2 | 559 | 2.15e-171 | 499 |
| Msa0508880 | AT4G38530.1 | 44.137 | 614 | 278 | 13 | 6 | 614 | 5 | 558 | 5.10e-169 | 493 |
| Msa0508880 | AT3G47290.1 | 39.015 | 528 | 239 | 11 | 87 | 611 | 81 | 528 | 4.24e-107 | 333 |
| Msa0508880 | AT3G47290.2 | 38.835 | 515 | 232 | 11 | 87 | 598 | 81 | 515 | 4.71e-103 | 324 |
| Msa0508880 | AT3G47220.1 | 38.230 | 531 | 238 | 16 | 87 | 611 | 82 | 528 | 1.46e-95 | 303 |
Find 132 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTAATTGAACTTGATTTA+TGG | 0.148872 | 3_4:+57102195 | Msa0508880:CDS |
| TGGACAATTGGTATCCTATT+TGG | 0.164917 | 3_4:+57104381 | Msa0508880:CDS |
| AGAACAAAATTGCACCTTAT+TGG | 0.178097 | 3_4:+57100463 | Msa0508880:CDS |
| AATGAGTAAGAAAATGATTT+TGG | 0.189464 | 3_4:-57100154 | None:intergenic |
| TGTGACACGTTCATTTATTT+TGG | 0.198420 | 3_4:+57104676 | Msa0508880:three_prime_UTR |
| TGTTTCAAAGCCTCTATAAT+TGG | 0.221396 | 3_4:-57102164 | None:intergenic |
| AGTGCATACCTCATCCTTTA+AGG | 0.223441 | 3_4:-57100609 | None:intergenic |
| CTCCTTTAGGATAAATTCTT+AGG | 0.242663 | 3_4:-57103432 | None:intergenic |
| CAGATGGCAAATAAAATATT+TGG | 0.245584 | 3_4:+57102780 | Msa0508880:intron |
| GTGAATCCGATTCCCATATT+TGG | 0.253107 | 3_4:-57104643 | None:intergenic |
| TGATTTCAATGGTCCCTTAA+AGG | 0.259016 | 3_4:+57100595 | Msa0508880:CDS |
| GATTGAACACGTTCTCCTTT+AGG | 0.264859 | 3_4:-57103445 | None:intergenic |
| AGACGTCGTTCATCCAAATA+TGG | 0.269481 | 3_4:+57104630 | Msa0508880:exon |
| AAATTGCACCTTATTGGATT+TGG | 0.270742 | 3_4:+57100469 | Msa0508880:CDS |
| ATTTCTTGAATTAGAAATTC+AGG | 0.279667 | 3_4:-57103995 | None:intergenic |
| GTGTGACAGGTTTGTATTGC+TGG | 0.315703 | 3_4:+57104317 | Msa0508880:intron |
| CTCATGGAGCCGACCTAATT+AGG | 0.322220 | 3_4:+57103299 | Msa0508880:CDS |
| AAACATTTGGTTAGTGCAAC+TGG | 0.337432 | 3_4:-57102376 | None:intergenic |
| AGTTTGATAGGTACCTAATT+AGG | 0.337781 | 3_4:-57103312 | None:intergenic |
| AGAACCACCTTTAGATCTTA+AGG | 0.339714 | 3_4:+57100361 | Msa0508880:CDS |
| TCAGTTTGAGGATGCTCCTT+TGG | 0.341714 | 3_4:-57102894 | None:intergenic |
| GGACACAATTCCTACCTTAC+TGG | 0.347434 | 3_4:+57102110 | Msa0508880:CDS |
| TCGAACTCTTCGTCCCAAAT+AGG | 0.347640 | 3_4:-57104395 | None:intergenic |
| GGACAATTGGTATCCTATTT+GGG | 0.357053 | 3_4:+57104382 | Msa0508880:CDS |
| TCACATTATTTCATGTATAC+AGG | 0.373381 | 3_4:+57102089 | Msa0508880:CDS |
| TTAACCTTTGTGTAAAAGTC+TGG | 0.380524 | 3_4:-57104225 | None:intergenic |
| ATCCGGAGCAACGCGAGCTC+TGG | 0.380866 | 3_4:-57104434 | None:intergenic |
| AATGAAACTAGCAGTATTGC+AGG | 0.384072 | 3_4:+57100533 | Msa0508880:CDS |
| GCAAAGTTATCCTGAAGTTT+TGG | 0.384127 | 3_4:-57102472 | None:intergenic |
| TCCATTTGACACATGATTGT+TGG | 0.385768 | 3_4:-57102922 | None:intergenic |
| TGTATTCACGTGCACCTTGC+TGG | 0.389565 | 3_4:-57103153 | None:intergenic |
| CAGAGCTAAGACATGGATTT+CGG | 0.389763 | 3_4:+57104519 | Msa0508880:CDS |
| AGTTGCACTAACCAAATGTT+TGG | 0.392870 | 3_4:+57102378 | Msa0508880:CDS |
| CCACCTAACACCAAAACTTC+AGG | 0.394243 | 3_4:+57102462 | Msa0508880:CDS |
| TATAAACTCTCTTCCACAAA+AGG | 0.407161 | 3_4:+57100207 | Msa0508880:five_prime_UTR |
| ATTGCAGGTACATCATGATA+TGG | 0.407698 | 3_4:+57102055 | Msa0508880:intron |
| GATTGGCTCCAAATCCAATA+AGG | 0.408541 | 3_4:-57100477 | None:intergenic |
| CAGTATTGCAGGACTCAGTT+TGG | 0.408717 | 3_4:+57100544 | Msa0508880:CDS |
| ACAGGAACAACAAGATTCTA+TGG | 0.416912 | 3_4:+57102974 | Msa0508880:CDS |
| TAAATGTGGCCTAAAATTTG+TGG | 0.417479 | 3_4:-57103467 | None:intergenic |
| TGAACATCCCTTGCATCAAC+CGG | 0.429950 | 3_4:-57103940 | None:intergenic |
| AAAGATAGACTAAAAGTTGA+TGG | 0.432276 | 3_4:+57103220 | Msa0508880:CDS |
| CAACAGGTAAAAGTATATAA+AGG | 0.432650 | 3_4:+57104150 | Msa0508880:intron |
| ACAATGTATTTAAAGTTTCA+AGG | 0.432965 | 3_4:-57104607 | None:intergenic |
| TTCCAGAGCTCGCGTTGCTC+CGG | 0.434663 | 3_4:+57104432 | Msa0508880:CDS |
| TTGATGGTGGTAAAGTTAGA+AGG | 0.435066 | 3_4:+57103236 | Msa0508880:CDS |
| CAATGCTTATCTAACTAGAT+AGG | 0.435098 | 3_4:-57102701 | None:intergenic |
| GGTGGTATTAAAGTAGTTCA+TGG | 0.435995 | 3_4:+57102236 | Msa0508880:CDS |
| CTGCTTCTAGATGATTTCAA+TGG | 0.441202 | 3_4:+57100584 | Msa0508880:CDS |
| ACATAGAACAACACTTTCAT+AGG | 0.443060 | 3_4:+57100115 | Msa0508880:five_prime_UTR |
| CGAGCTCTGGAACAGTCAAT+TGG | 0.444259 | 3_4:-57104421 | None:intergenic |
| CGAAGTGAAAGATAAAGATA+AGG | 0.444805 | 3_4:+57104457 | Msa0508880:CDS |
| GGATCAACTACTTAGATTCA+TGG | 0.446194 | 3_4:+57100427 | Msa0508880:CDS |
| TAGTAAATTGATTTCCAGTA+AGG | 0.448160 | 3_4:-57102124 | None:intergenic |
| CAAGTGTAAAGATGGACAAT+TGG | 0.450323 | 3_4:+57104369 | Msa0508880:CDS |
| TCAAGAAATTGTACATAATG+AGG | 0.452705 | 3_4:+57104009 | Msa0508880:CDS |
| CCATGTCTTAGCTCTGATAC+AGG | 0.454126 | 3_4:-57104512 | None:intergenic |
| TTTGGAGCCAATCATTGAAA+AGG | 0.458273 | 3_4:+57100487 | Msa0508880:CDS |
| CTTTATCTTTCACTTCGATC+CGG | 0.459942 | 3_4:-57104451 | None:intergenic |
| TCTTCTAAAGTTAGAATCAC+TGG | 0.460622 | 3_4:-57102439 | None:intergenic |
| GTTTGAGGATGCTCCTTTGG+TGG | 0.464803 | 3_4:-57102891 | None:intergenic |
| CCACATTTAGGGTGGATGTA+TGG | 0.468165 | 3_4:+57103481 | Msa0508880:CDS |
| GAAAGTAAGTGGTGAAGAGA+TGG | 0.469433 | 3_4:+57103099 | Msa0508880:intron |
| GTGCATACCTCATCCTTTAA+GGG | 0.469745 | 3_4:-57100608 | None:intergenic |
| CCACCATCTTTAGTTGAAGA+TGG | 0.471280 | 3_4:-57102218 | None:intergenic |
| TGGCCATCTTCAACTAAAGA+TGG | 0.471964 | 3_4:+57102215 | Msa0508880:CDS |
| ATCCTAAGAATTTATCCTAA+AGG | 0.472397 | 3_4:+57103430 | Msa0508880:CDS |
| GAAGAAAACAAGTGTAAAGA+TGG | 0.472423 | 3_4:+57104361 | Msa0508880:CDS |
| GAAGTGAAAGATAAAGATAA+GGG | 0.476695 | 3_4:+57104458 | Msa0508880:CDS |
| GATGGTTGCATTCAATATGC+AGG | 0.480468 | 3_4:+57103510 | Msa0508880:CDS |
| AAAGATTCCTTAAGATCTAA+AGG | 0.489446 | 3_4:-57100368 | None:intergenic |
| GCCAACAATCATGTGTCAAA+TGG | 0.498994 | 3_4:+57102921 | Msa0508880:CDS |
| CAATGGTCCCTTAAAGGATG+AGG | 0.514587 | 3_4:+57100601 | Msa0508880:CDS |
| GTTCATCCAAATATGGGAAT+CGG | 0.518589 | 3_4:+57104637 | Msa0508880:three_prime_UTR |
| TGTTGCTTTGTGTGACAGAA+AGG | 0.520816 | 3_4:+57104544 | Msa0508880:CDS |
| AAACATTTGATTACAATCCA+TGG | 0.524741 | 3_4:+57103175 | Msa0508880:CDS |
| GACGTCGTTCATCCAAATAT+GGG | 0.525484 | 3_4:+57104631 | Msa0508880:exon |
| AATCGTCTGCAGATGAAACA+TGG | 0.528007 | 3_4:+57102949 | Msa0508880:CDS |
| AAATCTGCTTCTGAGTCTCA+TGG | 0.528727 | 3_4:+57103283 | Msa0508880:CDS |
| CAGGTTTGTATTGCTGGAGT+GGG | 0.531989 | 3_4:+57104323 | Msa0508880:intron |
| CAGTGATAAACCAATTATAG+AGG | 0.533232 | 3_4:+57102154 | Msa0508880:CDS |
| TGCAGATGAAACATGGGGAC+AGG | 0.544750 | 3_4:+57102956 | Msa0508880:CDS |
| GTAAAAGTATATAAAGGAGT+TGG | 0.544857 | 3_4:+57104156 | Msa0508880:CDS |
| TGGTGAAAATTACATGTCAA+AGG | 0.547867 | 3_4:+57100406 | Msa0508880:CDS |
| CAAGGGATGTTCAAAGCGAA+TGG | 0.550048 | 3_4:+57103950 | Msa0508880:CDS |
| TTGTTGGCACCATCAGTTTG+AGG | 0.553822 | 3_4:-57102906 | None:intergenic |
| AAGTATATAAAGGAGTTGGT+TGG | 0.554621 | 3_4:+57104160 | Msa0508880:CDS |
| AAATCACTCCGGTTGATGCA+AGG | 0.554660 | 3_4:+57103932 | Msa0508880:CDS |
| TTGAAGATATGCATATTGTC+CGG | 0.556239 | 3_4:-57102644 | None:intergenic |
| ATTATAGAGGCTTTGAAACA+AGG | 0.556418 | 3_4:+57102167 | Msa0508880:CDS |
| CCTGTATCAGAGCTAAGACA+TGG | 0.557267 | 3_4:+57104512 | Msa0508880:CDS |
| ACCTTTGTGTAAAAGTCTGG+TGG | 0.557595 | 3_4:-57104222 | None:intergenic |
| ATCTGCTGAAGGTATAATGT+TGG | 0.561315 | 3_4:+57104733 | Msa0508880:three_prime_UTR |
| AATCACTCCGGTTGATGCAA+GGG | 0.562532 | 3_4:+57103933 | Msa0508880:CDS |
| ATAAACTCTCTTCCACAAAA+GGG | 0.564431 | 3_4:+57100208 | Msa0508880:five_prime_UTR |
| TATGAAAGTGTTGTTCTATG+TGG | 0.569005 | 3_4:-57100113 | None:intergenic |
| GTTCTATGGCAGAAAGTAAG+TGG | 0.570718 | 3_4:+57103088 | Msa0508880:intron |
| ACAGGTTTGTATTGCTGGAG+TGG | 0.572958 | 3_4:+57104322 | Msa0508880:intron |
| AAATTGATTTCCAGTAAGGT+AGG | 0.573386 | 3_4:-57102120 | None:intergenic |
| ATTTAAAGATAATCTGCTGA+AGG | 0.582512 | 3_4:+57104722 | Msa0508880:three_prime_UTR |
| GGATGTTCAAAGCGAATGGA+GGG | 0.590594 | 3_4:+57103954 | Msa0508880:CDS |
| TTCAAAGCGAATGGAGGGTG+CGG | 0.590959 | 3_4:+57103959 | Msa0508880:CDS |
| TACATGAAATAATGTGACAA+GGG | 0.596814 | 3_4:-57102083 | None:intergenic |
| AGGGGCATGGCAAATCACTC+CGG | 0.598085 | 3_4:+57103921 | Msa0508880:intron |
| TATATCAACTAAACCACCAA+AGG | 0.600524 | 3_4:+57102878 | Msa0508880:CDS |
| TTATCTAACTAGATAGGAGA+TGG | 0.603242 | 3_4:-57102695 | None:intergenic |
| GGGATGTTCAAAGCGAATGG+AGG | 0.604762 | 3_4:+57103953 | Msa0508880:CDS |
| TTTCAGACACCATCACGTGC+CGG | 0.605791 | 3_4:+57102625 | Msa0508880:intron |
| GATAGACTAAAAGTTGATGG+TGG | 0.608816 | 3_4:+57103223 | Msa0508880:CDS |
| GTGGATGTATGGAGCTCAGA+TGG | 0.609593 | 3_4:+57103492 | Msa0508880:CDS |
| TATATTTATGCATGAGATCG+AGG | 0.610657 | 3_4:-57100061 | None:intergenic |
| TAAACTGAAAACTGAGGACA+TGG | 0.614826 | 3_4:+57102998 | Msa0508880:CDS |
| CCATACATCCACCCTAAATG+TGG | 0.621111 | 3_4:-57103481 | None:intergenic |
| ATCCATGGTGGAAAATCAGA+AGG | 0.621784 | 3_4:+57103190 | Msa0508880:CDS |
| GCATATTGTCCGGCACGTGA+TGG | 0.621968 | 3_4:-57102634 | None:intergenic |
| ATCGTCTGCAGATGAAACAT+GGG | 0.625273 | 3_4:+57102950 | Msa0508880:CDS |
| TATTTGCTCATTCAAAACAG+AGG | 0.626026 | 3_4:+57100241 | Msa0508880:five_prime_UTR |
| TGATAGGTACCTAATTAGGT+CGG | 0.627187 | 3_4:-57103308 | None:intergenic |
| GTTGCTTTGTGTGACAGAAA+GGG | 0.634451 | 3_4:+57104545 | Msa0508880:CDS |
| AAGGAGCATCCTCAAACTGA+TGG | 0.641373 | 3_4:+57102897 | Msa0508880:CDS |
| CCATCTTCAACTAAAGATGG+TGG | 0.646507 | 3_4:+57102218 | Msa0508880:CDS |
| TCTGTTATACAATCTGTCGT+AGG | 0.648459 | 3_4:-57102819 | None:intergenic |
| ATGTATTTAAAGTTTCAAGG+TGG | 0.653263 | 3_4:-57104604 | None:intergenic |
| CATTTGATTACAATCCATGG+TGG | 0.665611 | 3_4:+57103178 | Msa0508880:CDS |
| TTTGGTTAGTGCAACTGGAG+TGG | 0.667170 | 3_4:-57102371 | None:intergenic |
| ATACATGAAATAATGTGACA+AGG | 0.675745 | 3_4:-57102084 | None:intergenic |
| GATTCCTTAAGATCTAAAGG+TGG | 0.677642 | 3_4:-57100365 | None:intergenic |
| TTCAAAACAGAGGAAAACAG+AGG | 0.677844 | 3_4:+57100251 | Msa0508880:five_prime_UTR |
| TATTACAAATCAAACCAGCA+AGG | 0.677933 | 3_4:+57103139 | Msa0508880:CDS |
| TATGGCTAAACTGAAAACTG+AGG | 0.685214 | 3_4:+57102992 | Msa0508880:CDS |
| TCAACTACTTAGATTCATGG+TGG | 0.694803 | 3_4:+57100430 | Msa0508880:CDS |
| TCGTCTGCAGATGAAACATG+GGG | 0.715707 | 3_4:+57102951 | Msa0508880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTATGAAAAAAAATTATTT+TGG | - | chr3_4:57101509-57101528 | None:intergenic | 10.0% |
| !!! | TTTTATTTTTTTTTTATGAC+AGG | + | chr3_4:57103901-57103920 | Msa0508880:intron | 10.0% |
| !!! | TTTATTTTTTTTTTATGACA+GGG | + | chr3_4:57103902-57103921 | Msa0508880:intron | 10.0% |
| !!! | TATATATTTTTATGCTAATG+TGG | + | chr3_4:57100642-57100661 | Msa0508880:intron | 15.0% |
| !!! | ACAGTTAGTATATATTTTTA+AGG | + | chr3_4:57100794-57100813 | Msa0508880:intron | 15.0% |
| !!! | TTTTTTTTAGATAGATGAAA+TGG | - | chr3_4:57101653-57101672 | None:intergenic | 15.0% |
| !!! | AAAATGAGATGATTTTTATT+CGG | + | chr3_4:57101838-57101857 | Msa0508880:intron | 15.0% |
| !! | GTATTATTTAATCTAATCAA+AGG | - | chr3_4:57101891-57101910 | None:intergenic | 15.0% |
| !!! | ATTTTTTCATATTATTAGTC+AGG | - | chr3_4:57102024-57102043 | None:intergenic | 15.0% |
| !! | AGATGGTTAATAATATAAAA+TGG | + | chr3_4:57103650-57103669 | Msa0508880:intron | 15.0% |
| !!! | AATATCACTATTGTTTTAAA+AGG | - | chr3_4:57103771-57103790 | None:intergenic | 15.0% |
| !!! | TTATTTTTTTTTTATGACAG+GGG | + | chr3_4:57103903-57103922 | Msa0508880:intron | 15.0% |
| !!! | AAAATGATTTTGGTTTTCAA+TGG | - | chr3_4:57100147-57100166 | None:intergenic | 20.0% |
| !!! | AATGAGTAAGAAAATGATTT+TGG | - | chr3_4:57100157-57100176 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTCATTCTCAATT+TGG | - | chr3_4:57100291-57100310 | None:intergenic | 20.0% |
| !!! | TAACATGACCTATATTTTTA+TGG | + | chr3_4:57100969-57100988 | Msa0508880:intron | 20.0% |
| !!! | AACATGACCTATATTTTTAT+GGG | + | chr3_4:57100970-57100989 | Msa0508880:intron | 20.0% |
| !! | TTAGAGAATATTTCTTCTTT+GGG | - | chr3_4:57101035-57101054 | None:intergenic | 20.0% |
| !! | TTTAGAGAATATTTCTTCTT+TGG | - | chr3_4:57101036-57101055 | None:intergenic | 20.0% |
| !! | CAATAGTAGAAATAGATTAT+TGG | - | chr3_4:57101113-57101132 | None:intergenic | 20.0% |
| !! | AGATTTGGCAAATAAAAATA+GGG | - | chr3_4:57101174-57101193 | None:intergenic | 20.0% |
| !!! | TAGCCAAACATTTTATTATT+TGG | + | chr3_4:57101234-57101253 | Msa0508880:intron | 20.0% |
| !! | GTTCCAAATAATAAAATGTT+TGG | - | chr3_4:57101240-57101259 | None:intergenic | 20.0% |
| !! | TAATACTATAAACAAAGAAG+TGG | - | chr3_4:57101292-57101311 | None:intergenic | 20.0% |
| !! | TTTCATAACAAAAAACTAAG+AGG | + | chr3_4:57101520-57101539 | Msa0508880:intron | 20.0% |
| !! | GCAAAAATTTCAAAATTGTT+AGG | + | chr3_4:57101558-57101577 | Msa0508880:intron | 20.0% |
| !! | AAATTTCAAAATTGTTAGGT+CGG | + | chr3_4:57101562-57101581 | Msa0508880:intron | 20.0% |
| !!! | CTTTATTTCAATAAAACTCT+TGG | - | chr3_4:57101682-57101701 | None:intergenic | 20.0% |
| !!! | ATACACTTAGAATTTTCATT+GGG | - | chr3_4:57101785-57101804 | None:intergenic | 20.0% |
| !! | ATTCAATCACTTCTATTTAT+AGG | - | chr3_4:57102589-57102608 | None:intergenic | 20.0% |
| !!! | AGAAAAAATGATGATGAATA+TGG | - | chr3_4:57102753-57102772 | None:intergenic | 20.0% |
| !!! | TTTTCTGAAAAATGAAATGA+TGG | - | chr3_4:57103046-57103065 | None:intergenic | 20.0% |
| !!! | AATTGTGTTTTTGGTATATT+TGG | + | chr3_4:57103537-57103556 | Msa0508880:intron | 20.0% |
| !! | AATTACGTTCATTAATTAGA+TGG | + | chr3_4:57103633-57103652 | Msa0508880:intron | 20.0% |
| !! | ATTTCTTGAATTAGAAATTC+AGG | - | chr3_4:57103998-57104017 | None:intergenic | 20.0% |
| !!! | TCTTTTAGTAAAGTGATTAA+AGG | - | chr3_4:57104088-57104107 | None:intergenic | 20.0% |
| !!! | ACATTTTGCAAAAATTCATT+TGG | + | chr3_4:57104279-57104298 | Msa0508880:intron | 20.0% |
| !!! | ACAATGTATTTAAAGTTTCA+AGG | - | chr3_4:57104610-57104629 | None:intergenic | 20.0% |
| ! | TTGGAAAAAAAAATGTAGTC+AGG | - | chr3_4:57099970-57099989 | None:intergenic | 25.0% |
| !! | GTTTTCTTTTTCTTTTCTAG+AGG | - | chr3_4:57100001-57100020 | None:intergenic | 25.0% |
| !! | TTAAGCTTTTTGACCAAAAA+AGG | + | chr3_4:57100323-57100342 | Msa0508880:CDS | 25.0% |
| !!! | CTTATTCACTTTACCTTTTT+TGG | - | chr3_4:57100339-57100358 | None:intergenic | 25.0% |
| ! | CAAAAAAGGTAAAGTGAATA+AGG | + | chr3_4:57100337-57100356 | Msa0508880:CDS | 25.0% |
| ! | AAAGATTCCTTAAGATCTAA+AGG | - | chr3_4:57100371-57100390 | None:intergenic | 25.0% |
| !! | TTCAAAACCTTTTCAATGAT+TGG | - | chr3_4:57100497-57100516 | None:intergenic | 25.0% |
| !!! | ACTCATTAACTTGTGTTTTA+AGG | - | chr3_4:57100835-57100854 | None:intergenic | 25.0% |
| ! | ATCACTACCCATAAAAATAT+AGG | - | chr3_4:57100980-57100999 | None:intergenic | 25.0% |
| ! | TAGAGAATATTTCTTCTTTG+GGG | - | chr3_4:57101034-57101053 | None:intergenic | 25.0% |
| !!! | AAAAGTTAATTTGTCCCTTA+AGG | - | chr3_4:57101151-57101170 | None:intergenic | 25.0% |
| ! | CAGATTTGGCAAATAAAAAT+AGG | - | chr3_4:57101175-57101194 | None:intergenic | 25.0% |
| ! | GTAAATTAACACATACAAAG+TGG | - | chr3_4:57101620-57101639 | None:intergenic | 25.0% |
| !! | TACACTTAGAATTTTCATTG+GGG | - | chr3_4:57101784-57101803 | None:intergenic | 25.0% |
| !! | CATACACTTAGAATTTTCAT+TGG | - | chr3_4:57101786-57101805 | None:intergenic | 25.0% |
| ! | AAATTTATGTATCTCATTGC+AGG | + | chr3_4:57102040-57102059 | Msa0508880:intron | 25.0% |
| ! | TACATGAAATAATGTGACAA+GGG | - | chr3_4:57102086-57102105 | None:intergenic | 25.0% |
| ! | ATACATGAAATAATGTGACA+AGG | - | chr3_4:57102087-57102106 | None:intergenic | 25.0% |
| ! | TCACATTATTTCATGTATAC+AGG | + | chr3_4:57102089-57102108 | Msa0508880:CDS | 25.0% |
| !! | TAGTAAATTGATTTCCAGTA+AGG | - | chr3_4:57102127-57102146 | None:intergenic | 25.0% |
| ! | GAGTAATTGAACTTGATTTA+TGG | + | chr3_4:57102195-57102214 | Msa0508880:CDS | 25.0% |
| !!! | GACAAAAGCATATTCTTTTA+TGG | - | chr3_4:57102407-57102426 | None:intergenic | 25.0% |
| !!! | ATTTTTTCTATTCATGCAGA+TGG | + | chr3_4:57102764-57102783 | Msa0508880:intron | 25.0% |
| ! | CAGATGGCAAATAAAATATT+TGG | + | chr3_4:57102780-57102799 | Msa0508880:intron | 25.0% |
| ! | AAACATTTGATTACAATCCA+TGG | + | chr3_4:57103175-57103194 | Msa0508880:CDS | 25.0% |
| ! | AAAGATAGACTAAAAGTTGA+TGG | + | chr3_4:57103220-57103239 | Msa0508880:CDS | 25.0% |
| ! | AATCTTCATGTAAGTTTGAT+AGG | - | chr3_4:57103327-57103346 | None:intergenic | 25.0% |
| !! | CATACATAGTTATGTTTTTC+AGG | + | chr3_4:57103392-57103411 | Msa0508880:intron | 25.0% |
| ! | ATCCTAAGAATTTATCCTAA+AGG | + | chr3_4:57103430-57103449 | Msa0508880:CDS | 25.0% |
| !! | AATCATGGTTAATTAGGTTT+TGG | - | chr3_4:57103699-57103718 | None:intergenic | 25.0% |
| ! | CTTGAAAATCATGGTTAATT+AGG | - | chr3_4:57103705-57103724 | None:intergenic | 25.0% |
| !!! | GTTTTAAAAGGTTCTCTAAT+AGG | - | chr3_4:57103759-57103778 | None:intergenic | 25.0% |
| ! | AGGTTTAAAAGAAATGTATG+TGG | - | chr3_4:57103854-57103873 | None:intergenic | 25.0% |
| !! | TTAAACCTTGTTGTCATATT+AGG | + | chr3_4:57103866-57103885 | Msa0508880:intron | 25.0% |
| ! | TAATTCCTAATATGACAACA+AGG | - | chr3_4:57103874-57103893 | None:intergenic | 25.0% |
| ! | TCAAGAAATTGTACATAATG+AGG | + | chr3_4:57104009-57104028 | Msa0508880:CDS | 25.0% |
| !! | TATTTTTCATGTTCAACAAC+AGG | + | chr3_4:57104134-57104153 | Msa0508880:intron | 25.0% |
| !! | CAACAGGTAAAAGTATATAA+AGG | + | chr3_4:57104150-57104169 | Msa0508880:intron | 25.0% |
| !! | GTAAAAGTATATAAAGGAGT+TGG | + | chr3_4:57104156-57104175 | Msa0508880:CDS | 25.0% |
| !! | ATGAATTTTTGCAAAATGTG+TGG | - | chr3_4:57104278-57104297 | None:intergenic | 25.0% |
| ! | GAAGTGAAAGATAAAGATAA+GGG | + | chr3_4:57104458-57104477 | Msa0508880:CDS | 25.0% |
| !! | ATGTATTTAAAGTTTCAAGG+TGG | - | chr3_4:57104607-57104626 | None:intergenic | 25.0% |
| ! | ATTTAAAGATAATCTGCTGA+AGG | + | chr3_4:57104722-57104741 | Msa0508880:three_prime_UTR | 25.0% |
| !! | CTTTTTCTTTTCTAGAGGTT+AGG | - | chr3_4:57099996-57100015 | None:intergenic | 30.0% |
| TATATTTATGCATGAGATCG+AGG | - | chr3_4:57100064-57100083 | None:intergenic | 30.0% | |
| !! | TATGAAAGTGTTGTTCTATG+TGG | - | chr3_4:57100116-57100135 | None:intergenic | 30.0% |
| ACATAGAACAACACTTTCAT+AGG | + | chr3_4:57100115-57100134 | Msa0508880:five_prime_UTR | 30.0% | |
| TATAAACTCTCTTCCACAAA+AGG | + | chr3_4:57100207-57100226 | Msa0508880:five_prime_UTR | 30.0% | |
| ATAAACTCTCTTCCACAAAA+GGG | + | chr3_4:57100208-57100227 | Msa0508880:five_prime_UTR | 30.0% | |
| TATTTGCTCATTCAAAACAG+AGG | + | chr3_4:57100241-57100260 | Msa0508880:five_prime_UTR | 30.0% | |
| ! | TCTTTTTCCAAGTTTGCAAA+TGG | + | chr3_4:57100386-57100405 | Msa0508880:CDS | 30.0% |
| ! | ATTTTCACCATTTGCAAACT+TGG | - | chr3_4:57100396-57100415 | None:intergenic | 30.0% |
| TGGTGAAAATTACATGTCAA+AGG | + | chr3_4:57100406-57100425 | Msa0508880:CDS | 30.0% | |
| AGAACAAAATTGCACCTTAT+TGG | + | chr3_4:57100463-57100482 | Msa0508880:CDS | 30.0% | |
| AAATTGCACCTTATTGGATT+TGG | + | chr3_4:57100469-57100488 | Msa0508880:CDS | 30.0% | |
| !!! | CATTGAAAAGGTTTTGAAAG+TGG | + | chr3_4:57100499-57100518 | Msa0508880:CDS | 30.0% |
| AAAAAACCATTTGAGCAATG+TGG | + | chr3_4:57100761-57100780 | Msa0508880:intron | 30.0% | |
| ATATACTAACTGTAAAGTGC+AGG | - | chr3_4:57100787-57100806 | None:intergenic | 30.0% | |
| !! | ATTCATTAACTTGTGCCTTA+AGG | + | chr3_4:57101133-57101152 | Msa0508880:intron | 30.0% |
| !! | TTCATTAACTTGTGCCTTAA+GGG | + | chr3_4:57101134-57101153 | Msa0508880:intron | 30.0% |
| ACTAGAAACTCAACATTCAT+TGG | + | chr3_4:57101211-57101230 | Msa0508880:intron | 30.0% | |
| !! | AAATTTTTGCCACTTGAACT+AGG | - | chr3_4:57101548-57101567 | None:intergenic | 30.0% |
| AATTAACACATACAAAGTGG+AGG | - | chr3_4:57101617-57101636 | None:intergenic | 30.0% | |
| ! | ACACTTAGAATTTTCATTGG+GGG | - | chr3_4:57101783-57101802 | None:intergenic | 30.0% |
| ! | AAATTGATTTCCAGTAAGGT+AGG | - | chr3_4:57102123-57102142 | None:intergenic | 30.0% |
| CAGTGATAAACCAATTATAG+AGG | + | chr3_4:57102154-57102173 | Msa0508880:CDS | 30.0% | |
| TGTTTCAAAGCCTCTATAAT+TGG | - | chr3_4:57102167-57102186 | None:intergenic | 30.0% | |
| !! | ATTATAGAGGCTTTGAAACA+AGG | + | chr3_4:57102167-57102186 | Msa0508880:CDS | 30.0% |
| ! | GGTGCATTATATTTTTCTAG+TGG | - | chr3_4:57102284-57102303 | None:intergenic | 30.0% |
| AATATAATGCACCATAGAGT+TGG | + | chr3_4:57102291-57102310 | Msa0508880:intron | 30.0% | |
| AAAACAATCATCCAACTCTA+TGG | - | chr3_4:57102305-57102324 | None:intergenic | 30.0% | |
| TTACTTCTTGAAATCAATGC+AGG | + | chr3_4:57102341-57102360 | Msa0508880:intron | 30.0% | |
| ! | TTTTATGGCTTCCAAACATT+TGG | - | chr3_4:57102392-57102411 | None:intergenic | 30.0% |
| !! | TCTTCTAAAGTTAGAATCAC+TGG | - | chr3_4:57102442-57102461 | None:intergenic | 30.0% |
| TTGAAGATATGCATATTGTC+CGG | - | chr3_4:57102647-57102666 | None:intergenic | 30.0% | |
| TTATCTAACTAGATAGGAGA+TGG | - | chr3_4:57102698-57102717 | None:intergenic | 30.0% | |
| CAATGCTTATCTAACTAGAT+AGG | - | chr3_4:57102704-57102723 | None:intergenic | 30.0% | |
| GGAATAGCAAAATAGTCATA+AGG | - | chr3_4:57102732-57102751 | None:intergenic | 30.0% | |
| ACCAGCATCACTAAAAAATA+TGG | + | chr3_4:57102851-57102870 | Msa0508880:CDS | 30.0% | |
| !!! | ACCATATTTTTTAGTGATGC+TGG | - | chr3_4:57102855-57102874 | None:intergenic | 30.0% |
| TATATCAACTAAACCACCAA+AGG | + | chr3_4:57102878-57102897 | Msa0508880:CDS | 30.0% | |
| AATCTGAATCATCTGTTCTA+TGG | + | chr3_4:57103074-57103093 | Msa0508880:intron | 30.0% | |
| TATTACAAATCAAACCAGCA+AGG | + | chr3_4:57103139-57103158 | Msa0508880:CDS | 30.0% | |
| AGTTTGATAGGTACCTAATT+AGG | - | chr3_4:57103315-57103334 | None:intergenic | 30.0% | |
| GCTGAATTAAACCTATCATA+TGG | + | chr3_4:57103364-57103383 | Msa0508880:intron | 30.0% | |
| !! | CTCCTTTAGGATAAATTCTT+AGG | - | chr3_4:57103435-57103454 | None:intergenic | 30.0% |
| ! | GTGTTCAATCCACAAATTTT+AGG | + | chr3_4:57103458-57103477 | Msa0508880:CDS | 30.0% |
| TAAATGTGGCCTAAAATTTG+TGG | - | chr3_4:57103470-57103489 | None:intergenic | 30.0% | |
| ! | ACAAATTTTAGGCCACATTT+AGG | + | chr3_4:57103469-57103488 | Msa0508880:CDS | 30.0% |
| ! | CAAATTTTAGGCCACATTTA+GGG | + | chr3_4:57103470-57103489 | Msa0508880:CDS | 30.0% |
| CATAACGCAATTCAAATACA+TGG | + | chr3_4:57103608-57103627 | Msa0508880:intron | 30.0% | |
| !! | TAACCATGATTTTCAAGCAT+TGG | + | chr3_4:57103708-57103727 | Msa0508880:intron | 30.0% |
| ! | ACTTTTAATATCTGCTTCAC+TGG | - | chr3_4:57104058-57104077 | None:intergenic | 30.0% |
| ! | AAGTATATAAAGGAGTTGGT+TGG | + | chr3_4:57104160-57104179 | Msa0508880:CDS | 30.0% |
| TTAACCTTTGTGTAAAAGTC+TGG | - | chr3_4:57104228-57104247 | None:intergenic | 30.0% | |
| GAAGAAAACAAGTGTAAAGA+TGG | + | chr3_4:57104361-57104380 | Msa0508880:CDS | 30.0% | |
| CGAAGTGAAAGATAAAGATA+AGG | + | chr3_4:57104457-57104476 | Msa0508880:CDS | 30.0% | |
| ! | TGTGACACGTTCATTTATTT+TGG | + | chr3_4:57104676-57104695 | Msa0508880:three_prime_UTR | 30.0% |
| !!! | TATTTTGGTAGTCTGATCAA+TGG | + | chr3_4:57104691-57104710 | Msa0508880:three_prime_UTR | 30.0% |
| !! | TTTTCTAGAGGTTAGGTGAT+TGG | - | chr3_4:57099989-57100008 | None:intergenic | 35.0% |
| ! | TAATTTCTCACACCCTTTTG+TGG | - | chr3_4:57100223-57100242 | None:intergenic | 35.0% |
| TTCAAAACAGAGGAAAACAG+AGG | + | chr3_4:57100251-57100270 | Msa0508880:five_prime_UTR | 35.0% | |
| AGAACCACCTTTAGATCTTA+AGG | + | chr3_4:57100361-57100380 | Msa0508880:CDS | 35.0% | |
| GATTCCTTAAGATCTAAAGG+TGG | - | chr3_4:57100368-57100387 | None:intergenic | 35.0% | |
| GGATCAACTACTTAGATTCA+TGG | + | chr3_4:57100427-57100446 | Msa0508880:CDS | 35.0% | |
| TCAACTACTTAGATTCATGG+TGG | + | chr3_4:57100430-57100449 | Msa0508880:CDS | 35.0% | |
| ! | TTTGGAGCCAATCATTGAAA+AGG | + | chr3_4:57100487-57100506 | Msa0508880:CDS | 35.0% |
| AATGAAACTAGCAGTATTGC+AGG | + | chr3_4:57100533-57100552 | Msa0508880:CDS | 35.0% | |
| CTGCTTCTAGATGATTTCAA+TGG | + | chr3_4:57100584-57100603 | Msa0508880:CDS | 35.0% | |
| TGATTTCAATGGTCCCTTAA+AGG | + | chr3_4:57100595-57100614 | Msa0508880:CDS | 35.0% | |
| ! | TAGTGATAACTTGTGCTCTT+AGG | + | chr3_4:57100993-57101012 | Msa0508880:intron | 35.0% |
| AAGTGCAACACAATCAGATT+TGG | - | chr3_4:57101189-57101208 | None:intergenic | 35.0% | |
| ATTGCAGGTACATCATGATA+TGG | + | chr3_4:57102055-57102074 | Msa0508880:intron | 35.0% | |
| GGTGGTATTAAAGTAGTTCA+TGG | + | chr3_4:57102236-57102255 | Msa0508880:CDS | 35.0% | |
| AAACATTTGGTTAGTGCAAC+TGG | - | chr3_4:57102379-57102398 | None:intergenic | 35.0% | |
| AGTTGCACTAACCAAATGTT+TGG | + | chr3_4:57102378-57102397 | Msa0508880:CDS | 35.0% | |
| !!! | TATCCTGAAGTTTTGGTGTT+AGG | - | chr3_4:57102468-57102487 | None:intergenic | 35.0% |
| ! | GCAAAGTTATCCTGAAGTTT+TGG | - | chr3_4:57102475-57102494 | None:intergenic | 35.0% |
| TCTGTTATACAATCTGTCGT+AGG | - | chr3_4:57102822-57102841 | None:intergenic | 35.0% | |
| !!! | TTTTTTAGTGATGCTGGTGA+GGG | - | chr3_4:57102849-57102868 | None:intergenic | 35.0% |
| !!! | ATTTTTTAGTGATGCTGGTG+AGG | - | chr3_4:57102850-57102869 | None:intergenic | 35.0% |
| TCCATTTGACACATGATTGT+TGG | - | chr3_4:57102925-57102944 | None:intergenic | 35.0% | |
| ACAGGAACAACAAGATTCTA+TGG | + | chr3_4:57102974-57102993 | Msa0508880:CDS | 35.0% | |
| TATGGCTAAACTGAAAACTG+AGG | + | chr3_4:57102992-57103011 | Msa0508880:CDS | 35.0% | |
| TAAACTGAAAACTGAGGACA+TGG | + | chr3_4:57102998-57103017 | Msa0508880:CDS | 35.0% | |
| CATTTGATTACAATCCATGG+TGG | + | chr3_4:57103178-57103197 | Msa0508880:CDS | 35.0% | |
| !! | GATAGACTAAAAGTTGATGG+TGG | + | chr3_4:57103223-57103242 | Msa0508880:CDS | 35.0% |
| !! | TTGATGGTGGTAAAGTTAGA+AGG | + | chr3_4:57103236-57103255 | Msa0508880:CDS | 35.0% |
| TGATAGGTACCTAATTAGGT+CGG | - | chr3_4:57103311-57103330 | None:intergenic | 35.0% | |
| TGTATGTCAAGCCATATGAT+AGG | - | chr3_4:57103378-57103397 | None:intergenic | 35.0% | |
| ! | GCAGGTTAGAATTGTGTTTT+TGG | + | chr3_4:57103528-57103547 | Msa0508880:intron | 35.0% |
| !! | CATGGTTAATTAGGTTTTGG+TGG | - | chr3_4:57103696-57103715 | None:intergenic | 35.0% |
| ATGCCAATGCTTGAAAATCA+TGG | - | chr3_4:57103714-57103733 | None:intergenic | 35.0% | |
| TAAAAGGTTCTCTAATAGGC+TGG | - | chr3_4:57103755-57103774 | None:intergenic | 35.0% | |
| CATAAGAAACCATAATGTCG+TGG | + | chr3_4:57103819-57103838 | Msa0508880:intron | 35.0% | |
| AGAAATGTATGTGGTCACAA+TGG | - | chr3_4:57103845-57103864 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTATGACAGGGGCA+TGG | + | chr3_4:57103908-57103927 | Msa0508880:intron | 35.0% |
| ! | AGGCTTTTGATCCTAAAAGA+AGG | + | chr3_4:57104029-57104048 | Msa0508880:CDS | 35.0% |
| ! | TTCACTGGAAACCTTCTTTT+AGG | - | chr3_4:57104043-57104062 | None:intergenic | 35.0% |
| CACAAAGGTTAATTAGTACC+CGG | + | chr3_4:57104236-57104255 | Msa0508880:intron | 35.0% | |
| TGGAGAAGAACTATACAAAC+CGG | - | chr3_4:57104258-57104277 | None:intergenic | 35.0% | |
| CAAGTGTAAAGATGGACAAT+TGG | + | chr3_4:57104369-57104388 | Msa0508880:CDS | 35.0% | |
| TGGACAATTGGTATCCTATT+TGG | + | chr3_4:57104381-57104400 | Msa0508880:CDS | 35.0% | |
| GGACAATTGGTATCCTATTT+GGG | + | chr3_4:57104382-57104401 | Msa0508880:CDS | 35.0% | |
| CTTTATCTTTCACTTCGATC+CGG | - | chr3_4:57104454-57104473 | None:intergenic | 35.0% | |
| ! | AACTCTGTCAAGCTTTTACT+TGG | + | chr3_4:57104578-57104597 | Msa0508880:CDS | 35.0% |
| GTTCATCCAAATATGGGAAT+CGG | + | chr3_4:57104637-57104656 | Msa0508880:three_prime_UTR | 35.0% | |
| ! | ATCTGCTGAAGGTATAATGT+TGG | + | chr3_4:57104733-57104752 | Msa0508880:three_prime_UTR | 35.0% |
| ! | GATTGGCTCCAAATCCAATA+AGG | - | chr3_4:57100480-57100499 | None:intergenic | 40.0% |
| GTGCATACCTCATCCTTTAA+GGG | - | chr3_4:57100611-57100630 | None:intergenic | 40.0% | |
| AGTGCATACCTCATCCTTTA+AGG | - | chr3_4:57100612-57100631 | None:intergenic | 40.0% | |
| ACAAATCTCACACTTTGGTG+GGG | - | chr3_4:57101341-57101360 | None:intergenic | 40.0% | |
| CACAAATCTCACACTTTGGT+GGG | - | chr3_4:57101342-57101361 | None:intergenic | 40.0% | |
| TCACAAATCTCACACTTTGG+TGG | - | chr3_4:57101343-57101362 | None:intergenic | 40.0% | |
| CACTCACAAATCTCACACTT+TGG | - | chr3_4:57101346-57101365 | None:intergenic | 40.0% | |
| CAAAGTGTGAGATTTGTGAG+TGG | + | chr3_4:57101344-57101363 | Msa0508880:intron | 40.0% | |
| GTGTGGGGTACATAGAAAAT+TGG | - | chr3_4:57101389-57101408 | None:intergenic | 40.0% | |
| ATTCTCCGTATAGAAACCGT+GGG | - | chr3_4:57101414-57101433 | None:intergenic | 40.0% | |
| TATTCTCCGTATAGAAACCG+TGG | - | chr3_4:57101415-57101434 | None:intergenic | 40.0% | |
| TAAGAGGTTCCTAGTTCAAG+TGG | + | chr3_4:57101536-57101555 | Msa0508880:intron | 40.0% | |
| !! | ACATACAAAGTGGAGGTGTT+GGG | - | chr3_4:57101610-57101629 | None:intergenic | 40.0% |
| TTCGGTACGTAAGTTCTCAA+TGG | + | chr3_4:57101856-57101875 | Msa0508880:intron | 40.0% | |
| TGGCCATCTTCAACTAAAGA+TGG | + | chr3_4:57102215-57102234 | Msa0508880:CDS | 40.0% | |
| CCACCATCTTTAGTTGAAGA+TGG | - | chr3_4:57102221-57102240 | None:intergenic | 40.0% | |
| CCATCTTCAACTAAAGATGG+TGG | + | chr3_4:57102218-57102237 | Msa0508880:CDS | 40.0% | |
| CGTCATGTATCAGTGCTTAT+AGG | - | chr3_4:57102534-57102553 | None:intergenic | 40.0% | |
| ! | CTATGTGATAGTGTTGTGTC+CGG | - | chr3_4:57102563-57102582 | None:intergenic | 40.0% |
| GCCAACAATCATGTGTCAAA+TGG | + | chr3_4:57102921-57102940 | Msa0508880:CDS | 40.0% | |
| AATCGTCTGCAGATGAAACA+TGG | + | chr3_4:57102949-57102968 | Msa0508880:CDS | 40.0% | |
| ATCGTCTGCAGATGAAACAT+GGG | + | chr3_4:57102950-57102969 | Msa0508880:CDS | 40.0% | |
| TGAAAACTGAGGACATGGTA+AGG | + | chr3_4:57103003-57103022 | Msa0508880:intron | 40.0% | |
| GTTCTATGGCAGAAAGTAAG+TGG | + | chr3_4:57103088-57103107 | Msa0508880:intron | 40.0% | |
| GAAAGTAAGTGGTGAAGAGA+TGG | + | chr3_4:57103099-57103118 | Msa0508880:intron | 40.0% | |
| ! | ATCCATGGTGGAAAATCAGA+AGG | + | chr3_4:57103190-57103209 | Msa0508880:CDS | 40.0% |
| ! | TACCTTCTGATTTTCCACCA+TGG | - | chr3_4:57103195-57103214 | None:intergenic | 40.0% |
| AAATCTGCTTCTGAGTCTCA+TGG | + | chr3_4:57103283-57103302 | Msa0508880:CDS | 40.0% | |
| GATTGAACACGTTCTCCTTT+AGG | - | chr3_4:57103448-57103467 | None:intergenic | 40.0% | |
| ! | ATTTTAGGCCACATTTAGGG+TGG | + | chr3_4:57103473-57103492 | Msa0508880:CDS | 40.0% |
| GATGGTTGCATTCAATATGC+AGG | + | chr3_4:57103510-57103529 | Msa0508880:CDS | 40.0% | |
| !! | TCAAGCATTGGCATATTGCA+TGG | + | chr3_4:57103720-57103739 | Msa0508880:intron | 40.0% |
| ! | TCCACCAGACTTTTACACAA+AGG | + | chr3_4:57104221-57104240 | Msa0508880:CDS | 40.0% |
| ACCTTTGTGTAAAAGTCTGG+TGG | - | chr3_4:57104225-57104244 | None:intergenic | 40.0% | |
| GGAGAAGAACTATACAAACC+GGG | - | chr3_4:57104257-57104276 | None:intergenic | 40.0% | |
| GATCAATCTGATTGTGTGAC+AGG | + | chr3_4:57104304-57104323 | Msa0508880:intron | 40.0% | |
| ! | AAGGGATCAGATGATTTTGC+TGG | + | chr3_4:57104476-57104495 | Msa0508880:CDS | 40.0% |
| CAGAGCTAAGACATGGATTT+CGG | + | chr3_4:57104519-57104538 | Msa0508880:CDS | 40.0% | |
| !! | TGTTGCTTTGTGTGACAGAA+AGG | + | chr3_4:57104544-57104563 | Msa0508880:CDS | 40.0% |
| ! | GTTGCTTTGTGTGACAGAAA+GGG | + | chr3_4:57104545-57104564 | Msa0508880:CDS | 40.0% |
| AGACGTCGTTCATCCAAATA+TGG | + | chr3_4:57104630-57104649 | Msa0508880:exon | 40.0% | |
| GACGTCGTTCATCCAAATAT+GGG | + | chr3_4:57104631-57104650 | Msa0508880:exon | 40.0% | |
| GTGAATCCGATTCCCATATT+TGG | - | chr3_4:57104646-57104665 | None:intergenic | 40.0% | |
| CAGTATTGCAGGACTCAGTT+TGG | + | chr3_4:57100544-57100563 | Msa0508880:CDS | 45.0% | |
| CAATGGTCCCTTAAAGGATG+AGG | + | chr3_4:57100601-57100620 | Msa0508880:CDS | 45.0% | |
| TTCTCCGTATAGAAACCGTG+GGG | - | chr3_4:57101413-57101432 | None:intergenic | 45.0% | |
| ACGGAGAATAGTCTCTATCG+CGG | + | chr3_4:57101425-57101444 | Msa0508880:intron | 45.0% | |
| !! | AGGTGTTGGGATTTGAATCC+CGG | - | chr3_4:57101597-57101616 | None:intergenic | 45.0% |
| ! | CACATACAAAGTGGAGGTGT+TGG | - | chr3_4:57101611-57101630 | None:intergenic | 45.0% |
| GGTACGTAAGTTCTCAATGG+AGG | + | chr3_4:57101859-57101878 | Msa0508880:intron | 45.0% | |
| GGACACAATTCCTACCTTAC+TGG | + | chr3_4:57102110-57102129 | Msa0508880:CDS | 45.0% | |
| TTTGGTTAGTGCAACTGGAG+TGG | - | chr3_4:57102374-57102393 | None:intergenic | 45.0% | |
| !!! | CCTGAAGTTTTGGTGTTAGG+TGG | - | chr3_4:57102465-57102484 | None:intergenic | 45.0% |
| CCACCTAACACCAAAACTTC+AGG | + | chr3_4:57102462-57102481 | Msa0508880:CDS | 45.0% | |
| TCAGTTTGAGGATGCTCCTT+TGG | - | chr3_4:57102897-57102916 | None:intergenic | 45.0% | |
| !! | AAGGAGCATCCTCAAACTGA+TGG | + | chr3_4:57102897-57102916 | Msa0508880:CDS | 45.0% |
| TTGTTGGCACCATCAGTTTG+AGG | - | chr3_4:57102909-57102928 | None:intergenic | 45.0% | |
| TCGTCTGCAGATGAAACATG+GGG | + | chr3_4:57102951-57102970 | Msa0508880:CDS | 45.0% | |
| CTGAGGACATGGTAAGGAAT+AGG | + | chr3_4:57103009-57103028 | Msa0508880:intron | 45.0% | |
| CCATACATCCACCCTAAATG+TGG | - | chr3_4:57103484-57103503 | None:intergenic | 45.0% | |
| ! | CCACATTTAGGGTGGATGTA+TGG | + | chr3_4:57103481-57103500 | Msa0508880:CDS | 45.0% |
| TCACAATGGCCACGACATTA+TGG | - | chr3_4:57103831-57103850 | None:intergenic | 45.0% | |
| ! | AAATCACTCCGGTTGATGCA+AGG | + | chr3_4:57103932-57103951 | Msa0508880:CDS | 45.0% |
| ! | AATCACTCCGGTTGATGCAA+GGG | + | chr3_4:57103933-57103952 | Msa0508880:CDS | 45.0% |
| TGAACATCCCTTGCATCAAC+CGG | - | chr3_4:57103943-57103962 | None:intergenic | 45.0% | |
| CAAGGGATGTTCAAAGCGAA+TGG | + | chr3_4:57103950-57103969 | Msa0508880:CDS | 45.0% | |
| GGATGTTCAAAGCGAATGGA+GGG | + | chr3_4:57103954-57103973 | Msa0508880:CDS | 45.0% | |
| GTGTGACAGGTTTGTATTGC+TGG | + | chr3_4:57104317-57104336 | Msa0508880:intron | 45.0% | |
| ACAGGTTTGTATTGCTGGAG+TGG | + | chr3_4:57104322-57104341 | Msa0508880:intron | 45.0% | |
| CAGGTTTGTATTGCTGGAGT+GGG | + | chr3_4:57104323-57104342 | Msa0508880:intron | 45.0% | |
| TCGAACTCTTCGTCCCAAAT+AGG | - | chr3_4:57104398-57104417 | None:intergenic | 45.0% | |
| !! | CCATGTCTTAGCTCTGATAC+AGG | - | chr3_4:57104515-57104534 | None:intergenic | 45.0% |
| CCTGTATCAGAGCTAAGACA+TGG | + | chr3_4:57104512-57104531 | Msa0508880:CDS | 45.0% | |
| TGCAGGCCACATTGCTCAAA+TGG | - | chr3_4:57100770-57100789 | None:intergenic | 50.0% | |
| GAGAATAGTCTCTATCGCGG+TGG | + | chr3_4:57101428-57101447 | Msa0508880:intron | 50.0% | |
| GTTAGGTCGGACGTTATGAC+CGG | + | chr3_4:57101575-57101594 | Msa0508880:intron | 50.0% | |
| TTAGGTCGGACGTTATGACC+GGG | + | chr3_4:57101576-57101595 | Msa0508880:intron | 50.0% | |
| CTGATACATGACGCAGACAC+CGG | + | chr3_4:57102541-57102560 | Msa0508880:intron | 50.0% | |
| TTTCAGACACCATCACGTGC+CGG | + | chr3_4:57102625-57102644 | Msa0508880:intron | 50.0% | |
| GTTTGAGGATGCTCCTTTGG+TGG | - | chr3_4:57102894-57102913 | None:intergenic | 50.0% | |
| TGCAGATGAAACATGGGGAC+AGG | + | chr3_4:57102956-57102975 | Msa0508880:CDS | 50.0% | |
| TGTATTCACGTGCACCTTGC+TGG | - | chr3_4:57103156-57103175 | None:intergenic | 50.0% | |
| CTCATGGAGCCGACCTAATT+AGG | + | chr3_4:57103299-57103318 | Msa0508880:CDS | 50.0% | |
| GTGGATGTATGGAGCTCAGA+TGG | + | chr3_4:57103492-57103511 | Msa0508880:CDS | 50.0% | |
| GGGATGTTCAAAGCGAATGG+AGG | + | chr3_4:57103953-57103972 | Msa0508880:CDS | 50.0% | |
| TTCAAAGCGAATGGAGGGTG+CGG | + | chr3_4:57103959-57103978 | Msa0508880:CDS | 50.0% | |
| !! | CGAGCTCTGGAACAGTCAAT+TGG | - | chr3_4:57104424-57104443 | None:intergenic | 50.0% |
| TCACACTTTGGTGGGGTACG+TGG | - | chr3_4:57101334-57101353 | None:intergenic | 55.0% | |
| ATAGAAACCGTGGGGCGTGT+GGG | - | chr3_4:57101405-57101424 | None:intergenic | 55.0% | |
| TATAGAAACCGTGGGGCGTG+TGG | - | chr3_4:57101406-57101425 | None:intergenic | 55.0% | |
| CACGCCCCACGGTTTCTATA+CGG | + | chr3_4:57101406-57101425 | Msa0508880:intron | 55.0% | |
| GCATATTGTCCGGCACGTGA+TGG | - | chr3_4:57102637-57102656 | None:intergenic | 55.0% | |
| ! | AGGGGCATGGCAAATCACTC+CGG | + | chr3_4:57103921-57103940 | Msa0508880:intron | 55.0% |
| TATGTACCCCACACGCCCCA+CGG | + | chr3_4:57101395-57101414 | Msa0508880:intron | 60.0% | |
| TAGAAACCGTGGGGCGTGTG+GGG | - | chr3_4:57101404-57101423 | None:intergenic | 60.0% | |
| TTCCAGAGCTCGCGTTGCTC+CGG | + | chr3_4:57104432-57104451 | Msa0508880:CDS | 60.0% | |
| ATCCGGAGCAACGCGAGCTC+TGG | - | chr3_4:57104437-57104456 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 57099966 | 57104765 | 57099966 | ID=Msa0508880;Name=Msa0508880 |
| chr3_4 | mRNA | 57099966 | 57104765 | 57099966 | ID=Msa0508880-mRNA-1;Parent=Msa0508880;Name=Msa0508880-mRNA-1;_AED=0.09;_eAED=0.09;_QI=333|0.77|0.9|0.9|1|1|10|134|619 |
| chr3_4 | exon | 57099966 | 57100622 | 57099966 | ID=Msa0508880-mRNA-1:exon:12971;Parent=Msa0508880-mRNA-1 |
| chr3_4 | exon | 57102062 | 57102261 | 57102062 | ID=Msa0508880-mRNA-1:exon:12972;Parent=Msa0508880-mRNA-1 |
| chr3_4 | exon | 57102363 | 57102498 | 57102363 | ID=Msa0508880-mRNA-1:exon:12973;Parent=Msa0508880-mRNA-1 |
| chr3_4 | exon | 57102631 | 57102708 | 57102631 | ID=Msa0508880-mRNA-1:exon:12974;Parent=Msa0508880-mRNA-1 |
| chr3_4 | exon | 57102783 | 57103019 | 57102783 | ID=Msa0508880-mRNA-1:exon:12975;Parent=Msa0508880-mRNA-1 |
| chr3_4 | exon | 57103100 | 57103320 | 57103100 | ID=Msa0508880-mRNA-1:exon:12976;Parent=Msa0508880-mRNA-1 |
| chr3_4 | exon | 57103414 | 57103531 | 57103414 | ID=Msa0508880-mRNA-1:exon:12977;Parent=Msa0508880-mRNA-1 |
| chr3_4 | exon | 57103923 | 57104075 | 57103923 | ID=Msa0508880-mRNA-1:exon:12978;Parent=Msa0508880-mRNA-1 |
| chr3_4 | exon | 57104156 | 57104242 | 57104156 | ID=Msa0508880-mRNA-1:exon:12979;Parent=Msa0508880-mRNA-1 |
| chr3_4 | exon | 57104326 | 57104765 | 57104326 | ID=Msa0508880-mRNA-1:exon:12980;Parent=Msa0508880-mRNA-1 |
| chr3_4 | five_prime_UTR | 57099966 | 57100298 | 57099966 | ID=Msa0508880-mRNA-1:five_prime_utr;Parent=Msa0508880-mRNA-1 |
| chr3_4 | CDS | 57100299 | 57100622 | 57100299 | ID=Msa0508880-mRNA-1:cds;Parent=Msa0508880-mRNA-1 |
| chr3_4 | CDS | 57102062 | 57102261 | 57102062 | ID=Msa0508880-mRNA-1:cds;Parent=Msa0508880-mRNA-1 |
| chr3_4 | CDS | 57102363 | 57102498 | 57102363 | ID=Msa0508880-mRNA-1:cds;Parent=Msa0508880-mRNA-1 |
| chr3_4 | CDS | 57102631 | 57102708 | 57102631 | ID=Msa0508880-mRNA-1:cds;Parent=Msa0508880-mRNA-1 |
| chr3_4 | CDS | 57102783 | 57103019 | 57102783 | ID=Msa0508880-mRNA-1:cds;Parent=Msa0508880-mRNA-1 |
| chr3_4 | CDS | 57103100 | 57103320 | 57103100 | ID=Msa0508880-mRNA-1:cds;Parent=Msa0508880-mRNA-1 |
| chr3_4 | CDS | 57103414 | 57103531 | 57103414 | ID=Msa0508880-mRNA-1:cds;Parent=Msa0508880-mRNA-1 |
| chr3_4 | CDS | 57103923 | 57104075 | 57103923 | ID=Msa0508880-mRNA-1:cds;Parent=Msa0508880-mRNA-1 |
| chr3_4 | CDS | 57104156 | 57104242 | 57104156 | ID=Msa0508880-mRNA-1:cds;Parent=Msa0508880-mRNA-1 |
| chr3_4 | CDS | 57104326 | 57104631 | 57104326 | ID=Msa0508880-mRNA-1:cds;Parent=Msa0508880-mRNA-1 |
| chr3_4 | three_prime_UTR | 57104632 | 57104765 | 57104632 | ID=Msa0508880-mRNA-1:three_prime_utr;Parent=Msa0508880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
