AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0422410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0422410 MtrunA17_Chr3g0117501 94.836 426 6 2 1 426 1 410 0.0 800
Msa0422410 MtrunA17_Chr4g0058971 74.766 321 64 2 105 425 79 382 6.18e-174 491
Msa0422410 MtrunA17_Chr6g0449891 67.751 338 97 1 88 425 90 415 3.88e-158 452
Msa0422410 MtrunA17_Chr2g0288011 39.335 361 187 6 73 418 52 395 2.61e-66 217
Msa0422410 MtrunA17_Chr3g0097931 39.233 339 188 4 81 418 80 401 1.14e-65 215
Msa0422410 MtrunA17_Chr2g0291851 40.588 340 179 5 82 415 70 392 3.92e-65 214
Msa0422410 MtrunA17_Chr4g0046561 37.822 349 193 7 83 426 69 398 8.68e-65 213
Msa0422410 MtrunA17_Chr4g0074541 40.533 338 178 4 81 418 78 392 2.47e-62 206
Msa0422410 MtrunA17_Chr5g0419001 34.606 393 226 5 48 426 28 403 3.26e-62 206
Msa0422410 MtrunA17_Chr3g0114581 29.204 339 193 15 101 422 3 311 6.48e-23 99.0
Msa0422410 MtrunA17_Chr1g0160071 29.042 334 185 15 104 422 14 310 2.54e-21 94.4
Msa0422410 MtrunA17_Chr4g0008071 25.723 311 198 6 118 418 20 307 1.08e-18 86.3
Msa0422410 MtrunA17_Chr3g0112981 26.667 240 159 3 179 418 97 319 1.02e-17 83.6
Msa0422410 MtrunA17_Chr5g0436341 26.613 248 159 4 171 418 79 303 3.25e-16 79.0
Msa0422410 MtrunA17_Chr8g0382081 25.439 228 153 2 191 418 96 306 4.20e-15 75.9
Msa0422410 MtrunA17_Chr4g0056661 25.703 249 163 4 176 422 122 350 1.61e-11 65.5
Msa0422410 MtrunA17_Chr2g0307091 23.599 339 221 10 100 426 2 314 7.06e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0422410 AT5G33320.1 67.053 431 114 7 1 426 1 408 0.0 531
Msa0422410 AT3G01550.1 60.534 337 120 2 87 423 55 378 1.45e-134 392
Msa0422410 AT3G01550.2 59.347 337 119 3 87 423 55 373 2.35e-128 375
Msa0422410 AT5G17630.1 39.503 362 197 5 63 422 67 408 4.58e-74 238
Msa0422410 AT5G54800.1 40.483 331 178 3 90 417 73 387 5.11e-68 221
Msa0422410 AT1G61800.1 39.437 355 190 5 65 418 58 388 3.20e-66 216
Msa0422410 AT1G61800.2 39.437 355 190 5 65 418 58 388 5.55e-66 216
Msa0422410 AT5G46110.4 35.580 371 206 8 68 424 54 405 3.40e-64 212
Msa0422410 AT5G46110.1 35.389 373 208 8 68 426 54 407 3.54e-64 212
Msa0422410 AT5G46110.2 37.942 311 171 6 117 424 1 292 2.25e-62 204
Msa0422410 AT5G46110.3 34.316 373 201 9 68 426 54 396 1.38e-58 197
Msa0422410 AT1G21870.1 28.657 335 189 13 104 424 15 313 5.75e-23 99.8
Msa0422410 AT4G03950.1 28.438 320 153 12 104 420 11 257 2.63e-22 96.3
Msa0422410 AT1G77610.1 27.988 343 191 15 97 422 2 305 5.95e-21 93.6
Msa0422410 AT3G10290.1 24.765 319 213 5 107 418 54 352 7.79e-20 90.9
Msa0422410 AT3G11320.1 25.890 309 207 7 118 422 18 308 9.79e-18 84.0
Msa0422410 AT5G04160.1 26.140 329 206 8 102 418 3 306 1.29e-17 83.6
Msa0422410 AT1G43310.1 74.468 47 12 0 223 269 41 87 1.42e-17 78.2
Msa0422410 AT5G05820.1 25.902 305 205 6 118 418 18 305 1.73e-17 83.2
Msa0422410 AT1G12500.1 26.877 253 155 6 173 422 131 356 3.23e-14 73.9
Msa0422410 AT5G11230.1 24.012 329 222 9 96 417 2 309 8.95e-11 63.5

Find 146 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGATCCTTGTTCGGTTTA+TGG 0.127694 3_2:+71711609 Msa0422410:CDS
GCGGAGTCACCAGCGCTTTC+GGG 0.195666 3_2:-71711551 None:intergenic
ATTCAGAATTTGCAGCTATT+TGG 0.225406 3_2:-71715094 None:intergenic
GAAGGCTGTGGACTGCATTT+TGG 0.267902 3_2:-71711273 None:intergenic
GGCGGAGTCACCAGCGCTTT+CGG 0.269788 3_2:-71711552 None:intergenic
GTCTCTCCTGTGAATGCTTT+TGG 0.293260 3_2:+71714860 Msa0422410:CDS
CTCGCTATTGTGCATACTTT+GGG 0.297295 3_2:+71712151 Msa0422410:CDS
GTCGTTGTTGTTAGATGATT+TGG 0.302177 3_2:-71711372 None:intergenic
CAAATTCTGAATTTATTTGT+AGG 0.303251 3_2:+71715105 Msa0422410:three_prime_UTR
TGAACTACAGTCACGGTTAC+AGG 0.306882 3_2:-71711833 None:intergenic
TTGCCGACGGAATGGGTAAC+AGG 0.314706 3_2:-71714782 None:intergenic
TTGTAGGTGAGATAGGAATA+TGG 0.317006 3_2:+71715121 Msa0422410:three_prime_UTR
TGGGGTTGGTGTGGAGAGGG+AGG 0.317556 3_2:-71711310 None:intergenic
TGGTGTGGAGAGGGAGGGTA+GGG 0.320081 3_2:-71711304 None:intergenic
CGGCGGAGAGACGGAGGTTA+AGG 0.320918 3_2:-71711349 None:intergenic
AATTTATTTGTAGGTGAGAT+AGG 0.325683 3_2:+71715114 Msa0422410:three_prime_UTR
ATCCTTTCTGCAATGTTCCT+TGG 0.335342 3_2:+71712259 Msa0422410:CDS
ACGTAATGTTCTTAGCAAAA+AGG 0.346379 3_2:+71713029 Msa0422410:CDS
CACCTTTCCAAGACTCATAT+TGG 0.360488 3_2:-71712185 None:intergenic
ATTTGTAATAATTTATATAC+AGG 0.369573 3_2:-71715453 None:intergenic
TCTCGTTTGTTAAAGTTGAT+AGG 0.371226 3_2:+71713303 Msa0422410:CDS
CTTCAGCTTGGATCCTTGTT+CGG 0.377633 3_2:+71711602 Msa0422410:CDS
CCCTCACCAAACATTGTTGC+TGG 0.382642 3_2:+71711120 Msa0422410:five_prime_UTR
ACTCGCTATTGTGCATACTT+TGG 0.384453 3_2:+71712150 Msa0422410:CDS
AAATCTCAATGTTGTTTAAG+TGG 0.395765 3_2:-71711219 None:intergenic
TTGGTGTGGAGAGGGAGGGT+AGG 0.399116 3_2:-71711305 None:intergenic
TTGTTTCTTTCAGGAATCAT+TGG 0.401238 3_2:+71713163 Msa0422410:intron
TATGTCATCATAATCTGTTT+TGG 0.401392 3_2:+71715341 Msa0422410:three_prime_UTR
CCGCCACCAGCAACAATGTT+TGG 0.409290 3_2:-71711126 None:intergenic
CTGTTCTTGTAACCTTTATG+TGG 0.412077 3_2:+71711870 Msa0422410:CDS
CTTCAATATTTACAACAAAC+AGG 0.414806 3_2:+71711649 Msa0422410:CDS
AGGCCTACACCCTGGGTGAT+TGG 0.426673 3_2:+71712777 Msa0422410:CDS
TGTAGGTGAGATAGGAATAT+GGG 0.427352 3_2:+71715122 Msa0422410:three_prime_UTR
TTACTGAAGCCTCTTTCAAT+TGG 0.432373 3_2:+71712841 Msa0422410:CDS
AGGGAGCGTCTGAAACGGTT+GGG 0.432953 3_2:-71711329 None:intergenic
AGCGCTTTCGGGGACGGAAG+TGG 0.442160 3_2:-71711540 None:intergenic
GGTTCACTCGTGCCTATTGT+TGG 0.445657 3_2:+71712798 Msa0422410:CDS
ACAGCAGATTGCAGGTAAGC+AGG 0.445859 3_2:-71713275 None:intergenic
AGATACTCACAGCAGATTGC+AGG 0.447914 3_2:-71713283 None:intergenic
AGTGCAACTCCACCAACAAT+AGG 0.455372 3_2:-71712810 None:intergenic
GAGTGCAGCAAGAAGAGATC+TGG 0.457303 3_2:-71713428 None:intergenic
CTTCATTCACTCGTCAATCA+TGG 0.462555 3_2:+71711435 Msa0422410:CDS
AAGTTATTCTGCTTGGTGAT+TGG 0.464588 3_2:+71715376 Msa0422410:three_prime_UTR
GAATTTGAAAGAAGAGGAAG+AGG 0.466601 3_2:-71711471 None:intergenic
CACACAATTGCCGACGGAAT+GGG 0.466624 3_2:-71714789 None:intergenic
TTCTGCAATGTTCCTTGGAG+AGG 0.467903 3_2:+71712264 Msa0422410:CDS
GGTGTGGAGAGGGAGGGTAG+GGG 0.472217 3_2:-71711303 None:intergenic
TAGATTTAGAGCCCACATAA+AGG 0.472384 3_2:-71711882 None:intergenic
GGCGGAGAGACGGAGGTTAA+GGG 0.474532 3_2:-71711348 None:intergenic
TGGAGATCTGAAACGGAAGA+TGG 0.475429 3_2:-71711253 None:intergenic
TGCTAAGAACATTACGTGAC+TGG 0.485983 3_2:-71713023 None:intergenic
TGATAGGATTGTTGTATCAC+AGG 0.486171 3_2:+71713319 Msa0422410:CDS
GTCACCAGCGCTTTCGGGGA+CGG 0.490017 3_2:-71711546 None:intergenic
CAGATCTTACCAATTGAAAG+AGG 0.491870 3_2:-71712850 None:intergenic
ACTGTAGTTCAATTTGCTGT+TGG 0.493045 3_2:+71711845 Msa0422410:CDS
GAGGGTAGGGGAGAGAGTGA+AGG 0.493247 3_2:-71711291 None:intergenic
TCACACAATTGCCGACGGAA+TGG 0.493383 3_2:-71714790 None:intergenic
CCAAACATTGTTGCTGGTGG+CGG 0.495853 3_2:+71711126 Msa0422410:five_prime_UTR
GGGGTTGGTGTGGAGAGGGA+GGG 0.496153 3_2:-71711309 None:intergenic
TACTCACACAATTAAAGCTA+TGG 0.496545 3_2:+71712219 Msa0422410:CDS
GCGTCTGAAACGGTTGGGGT+TGG 0.501064 3_2:-71711324 None:intergenic
CAGCAGATTGCAGGTAAGCA+GGG 0.503249 3_2:-71713274 None:intergenic
TGTTCTTGTAACCTTTATGT+GGG 0.507076 3_2:+71711871 Msa0422410:CDS
TATTGTTGGTGGAGTTGCAC+TGG 0.508448 3_2:+71712812 Msa0422410:CDS
GGTTGGGGTTGGTGTGGAGA+GGG 0.509075 3_2:-71711313 None:intergenic
AGCTCCCGCAGCTATCTTCA+TGG 0.509736 3_2:+71713235 Msa0422410:CDS
GATAATGTGTGGCATGGCAT+GGG 0.510507 3_2:-71715163 None:intergenic
TCGGGGACGGAAGTGGCTTG+AGG 0.514782 3_2:-71711533 None:intergenic
GCCTAAAATCACTGGTGCCA+TGG 0.518278 3_2:+71711913 Msa0422410:CDS
GGTACCGCTATAGCTCTTGC+TGG 0.520308 3_2:+71714977 Msa0422410:intron
CGGTTGGGGTTGGTGTGGAG+AGG 0.521702 3_2:-71711314 None:intergenic
AGGTCTGAATTTGAAAGAAG+AGG 0.522741 3_2:-71711477 None:intergenic
AAAGCATTCACAGGAGAGAC+AGG 0.525906 3_2:-71714857 None:intergenic
GGATAATGTGTGGCATGGCA+TGG 0.529645 3_2:-71715164 None:intergenic
GAAGTAGGAACAAGAGGAAG+AGG 0.529831 3_2:-71711497 None:intergenic
ACAATGCAAGTTATTCTGCT+TGG 0.529975 3_2:+71715369 Msa0422410:three_prime_UTR
CACCAATATGAGTCTTGGAA+AGG 0.530315 3_2:+71712183 Msa0422410:CDS
GGCTTGAGGAGGAGAAAGAT+CGG 0.533503 3_2:-71711519 None:intergenic
TACAAGAGGCCTAAAATCAC+TGG 0.538197 3_2:+71711905 Msa0422410:CDS
TGCTGGTGGCGGACTACACG+AGG 0.541795 3_2:+71711137 Msa0422410:five_prime_UTR
TTCTTACATGATATTGCAGA+GGG 0.548286 3_2:+71714754 Msa0422410:CDS
TTGAAAGAAGAGGAAGAGGA+AGG 0.548852 3_2:-71711467 None:intergenic
AGATCGGAAGTAGGAACAAG+AGG 0.551121 3_2:-71711503 None:intergenic
GCATGGCATGGGGTCAAGAA+AGG 0.552207 3_2:-71715152 None:intergenic
AGAGGAAGAGGAAGGAGACA+TGG 0.552637 3_2:-71711459 None:intergenic
CCCTCCATGAAGATAGCTGC+GGG 0.553556 3_2:-71713239 None:intergenic
GGAGGAGAAAGATCGGAAGT+AGG 0.554082 3_2:-71711512 None:intergenic
GGGAGCGTCTGAAACGGTTG+GGG 0.557883 3_2:-71711328 None:intergenic
ATGATTTGGCGGCGGAGAGA+CGG 0.559649 3_2:-71711358 None:intergenic
TGCCGACGGAATGGGTAACA+GGG 0.564452 3_2:-71714781 None:intergenic
ACTTCCGTCCCCGAAAGCGC+TGG 0.564558 3_2:+71711542 Msa0422410:CDS
TCTTTACCAAAAGCATTCAC+AGG 0.565255 3_2:-71714866 None:intergenic
TCACTCGTGCCTATTGTTGG+TGG 0.566205 3_2:+71712801 Msa0422410:CDS
AAGGGAGCGTCTGAAACGGT+TGG 0.567588 3_2:-71711330 None:intergenic
CTAACAGAGGCCTACACCCT+GGG 0.568546 3_2:+71712770 Msa0422410:intron
AACTCACTTGCTGATACGCA+TGG 0.568987 3_2:-71713456 None:intergenic
GGCTGGATTTGCGAGTGCAA+TGG 0.570606 3_2:+71712984 Msa0422410:CDS
GAACCAATCACCCAGGGTGT+AGG 0.571373 3_2:-71712780 None:intergenic
TCTAACAGAGGCCTACACCC+TGG 0.571500 3_2:+71712769 Msa0422410:intron
CAATATGAGTCTTGGAAAGG+TGG 0.571553 3_2:+71712186 Msa0422410:CDS
ACAATGTTTGGTGAGGGAGT+TGG 0.573594 3_2:-71711114 None:intergenic
AAAGGTCATGGTTAAGCAAG+AGG 0.575123 3_2:+71713047 Msa0422410:CDS
TCCCCTGTTACCCATTCCGT+CGG 0.576931 3_2:+71714779 Msa0422410:CDS
GTTGTTGTTAGATGATTTGG+CGG 0.577181 3_2:-71711369 None:intergenic
GAAAGGATGACAGAAAAGAA+AGG 0.577210 3_2:-71712244 None:intergenic
AGGGGAGAGAGTGAAGGCTG+TGG 0.579441 3_2:-71711285 None:intergenic
TATTGAAGTAGATGTTGAAG+AGG 0.581047 3_2:-71711634 None:intergenic
TCGCTATTGTGCATACTTTG+GGG 0.588012 3_2:+71712152 Msa0422410:CDS
GAACTACAGTCACGGTTACA+GGG 0.591540 3_2:-71711832 None:intergenic
AACGACGGCGTAAATCTCAA+TGG 0.595180 3_2:+71711389 Msa0422410:CDS
TGAAACGGTTGGGGTTGGTG+TGG 0.596713 3_2:-71711319 None:intergenic
GGTTAAGGGAGCGTCTGAAA+CGG 0.598374 3_2:-71711334 None:intergenic
GGGACGGAAGTGGCTTGAGG+AGG 0.601394 3_2:-71711530 None:intergenic
CTCCAAGGAACATTGCAGAA+AGG 0.601742 3_2:-71712261 None:intergenic
ACGTGACTGGTTTGTCACAT+TGG 0.602709 3_2:-71713010 None:intergenic
ACCAGCAACAATGTTTGGTG+AGG 0.604584 3_2:-71711121 None:intergenic
AGCAAATTGAACTACAGTCA+CGG 0.606377 3_2:-71711840 None:intergenic
CCCGCAGCTATCTTCATGGA+GGG 0.610657 3_2:+71713239 Msa0422410:CDS
TTTCTTACATGATATTGCAG+AGG 0.611685 3_2:+71714753 Msa0422410:CDS
TCACCAAACATTGTTGCTGG+TGG 0.614402 3_2:+71711123 Msa0422410:five_prime_UTR
GTTGTTAGATGATTTGGCGG+CGG 0.614664 3_2:-71711366 None:intergenic
CGGAGTCACCAGCGCTTTCG+GGG 0.619544 3_2:-71711550 None:intergenic
ATCAAAATCACACCTTCATG+TGG 0.627621 3_2:-71715296 None:intergenic
AACGCCAGCAAGAGCTATAG+CGG 0.629902 3_2:-71714981 None:intergenic
TTAGCACTCTAACCTCTCCA+AGG 0.630079 3_2:-71712276 None:intergenic
TCCCGCAGCTATCTTCATGG+AGG 0.630179 3_2:+71713238 Msa0422410:CDS
CAATTGTGTGAAGCGTGTTG+TGG 0.634531 3_2:+71714802 Msa0422410:CDS
ATTTGGCGGCGGAGAGACGG+AGG 0.634566 3_2:-71711355 None:intergenic
CCAGCAACAATGTTTGGTGA+GGG 0.637781 3_2:-71711120 None:intergenic
AAAGTATGCACAATAGCGAG+TGG 0.638254 3_2:-71712148 None:intergenic
GAGGTACCATAAACCGAACA+AGG 0.639078 3_2:-71711615 None:intergenic
AGCAGATTGCAGGTAAGCAG+GGG 0.639869 3_2:-71713273 None:intergenic
CACGAGTGAACCAATCACCC+AGG 0.642426 3_2:-71712787 None:intergenic
GTAGGTGAGATAGGAATATG+GGG 0.645517 3_2:+71715123 Msa0422410:three_prime_UTR
AAAATGGATAATGTGTGGCA+TGG 0.646505 3_2:-71715169 None:intergenic
GGGCTCTAAATCTATACAAG+AGG 0.650564 3_2:+71711891 Msa0422410:CDS
ACGCTTCACACAATTGCCGA+CGG 0.667607 3_2:-71714795 None:intergenic
ACCCTCCATGAAGATAGCTG+CGG 0.681078 3_2:-71713240 None:intergenic
ATAATGTGTGGCATGGCATG+GGG 0.684494 3_2:-71715162 None:intergenic
ACGAGTGAACCAATCACCCA+GGG 0.685336 3_2:-71712786 None:intergenic
GCCGACGGAATGGGTAACAG+GGG 0.690384 3_2:-71714780 None:intergenic
CAACGAACTAGACTCGGCGG+CGG 0.699628 3_2:-71711570 None:intergenic
AAATCATCTAACAACAACGA+CGG 0.712539 3_2:+71711374 Msa0422410:CDS
GCTGGTGGCGGACTACACGA+GGG 0.719767 3_2:+71711138 Msa0422410:five_prime_UTR
AGACATAATTGAAATCCACA+TGG 0.736794 3_2:-71715210 None:intergenic
TAGCAACGAACTAGACTCGG+CGG 0.750243 3_2:-71711573 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTATTTTTTAAGAAAAAAA+TGG - chr3_2:71715188-71715207 None:intergenic 10.0%
!! ATTTGTAATAATTTATATAC+AGG - chr3_2:71715456-71715475 None:intergenic 10.0%
!! TCTTATTCTCAAATTATTAT+GGG - chr3_2:71712033-71712052 None:intergenic 15.0%
!! TACAAAATATTAACAAATAG+CGG - chr3_2:71712599-71712618 None:intergenic 15.0%
!!! CTCTGATTATATTTTTTTAT+AGG + chr3_2:71714956-71714975 Msa0422410:intron 15.0%
!!! AGAGTATTTTATTTTCAATG+TGG + chr3_2:71711773-71711792 Msa0422410:intron 20.0%
!!! GTCTTATTCTCAAATTATTA+TGG - chr3_2:71712034-71712053 None:intergenic 20.0%
!! GAACAAGATTAAATTTAAAC+CGG - chr3_2:71712402-71712421 None:intergenic 20.0%
!!! ACTCTTTTGATATATTTCTA+TGG + chr3_2:71712513-71712532 Msa0422410:intron 20.0%
!! AATACATTTGATGTATTCTA+AGG + chr3_2:71712708-71712727 Msa0422410:intron 20.0%
!!! TGATTTGTAAAGAAAAGATT+CGG + chr3_2:71712917-71712936 Msa0422410:intron 20.0%
!!! ATTCCTTTAAAGAAAATAGA+GGG - chr3_2:71713521-71713540 None:intergenic 20.0%
!! TGTGTAATTGAAATTCTAAA+AGG - chr3_2:71713766-71713785 None:intergenic 20.0%
!! AATTGAGATGAAATAAATGA+GGG - chr3_2:71713812-71713831 None:intergenic 20.0%
!! TACTTAAGAAACACTTAAAT+TGG + chr3_2:71713933-71713952 Msa0422410:intron 20.0%
!! ACTTAAGAAACACTTAAATT+GGG + chr3_2:71713934-71713953 Msa0422410:intron 20.0%
!!! TTTAAATTTTAATGAACGTC+AGG + chr3_2:71714057-71714076 Msa0422410:intron 20.0%
!!! AGTAATATTTTTCTGTGAAT+GGG + chr3_2:71714722-71714741 Msa0422410:intron 20.0%
!! AAAAATATAATCAGAGTGAA+GGG - chr3_2:71714952-71714971 None:intergenic 20.0%
!! AAAAAATATAATCAGAGTGA+AGG - chr3_2:71714953-71714972 None:intergenic 20.0%
!! CAAATTCTGAATTTATTTGT+AGG + chr3_2:71715105-71715124 Msa0422410:three_prime_UTR 20.0%
!!! ATATGAGAAAAATTCTAAAG+AGG - chr3_2:71715275-71715294 None:intergenic 20.0%
!! AAATCTCAATGTTGTTTAAG+TGG - chr3_2:71711222-71711241 None:intergenic 25.0%
! CTTCAATATTTACAACAAAC+AGG + chr3_2:71711649-71711668 Msa0422410:CDS 25.0%
! TTGAGTTATACTATGAAACA+CGG + chr3_2:71711979-71711998 Msa0422410:intron 25.0%
! AACACATAACATCTAATTGA+AGG - chr3_2:71712083-71712102 None:intergenic 25.0%
! TTTATTCATATTCCGCTATA+TGG + chr3_2:71712573-71712592 Msa0422410:intron 25.0%
!!! TCTAGCTTTTGTATTGTAAT+TGG + chr3_2:71712678-71712697 Msa0422410:intron 25.0%
! TGAATTCTAATATGCTTTGA+TGG + chr3_2:71712949-71712968 Msa0422410:intron 25.0%
!!! CTTTGATGGATTATTGAATA+GGG + chr3_2:71712963-71712982 Msa0422410:intron 25.0%
! CATAAAATGTCTTCTTGAAT+GGG - chr3_2:71713103-71713122 None:intergenic 25.0%
! TCATAAAATGTCTTCTTGAA+TGG - chr3_2:71713104-71713123 None:intergenic 25.0%
!!! ACAATGATTTTGTTTCTTTC+AGG + chr3_2:71713154-71713173 Msa0422410:intron 25.0%
! TATACATTATCTTTCTTGAC+AGG + chr3_2:71713381-71713400 Msa0422410:intron 25.0%
! ATACATTATCTTTCTTGACA+GGG + chr3_2:71713382-71713401 Msa0422410:intron 25.0%
!! CATTCCTTTAAAGAAAATAG+AGG - chr3_2:71713522-71713541 None:intergenic 25.0%
! GCATGTTATAAAACATTTCA+CGG - chr3_2:71713686-71713705 None:intergenic 25.0%
! GAATTGAGATGAAATAAATG+AGG - chr3_2:71713813-71713832 None:intergenic 25.0%
! CTTAAGAAACACTTAAATTG+GGG + chr3_2:71713935-71713954 Msa0422410:intron 25.0%
! TACTTCATAAGATAATCTAC+AGG - chr3_2:71714549-71714568 None:intergenic 25.0%
! ATATTACTCTTTCATTGCAT+TGG - chr3_2:71714710-71714729 None:intergenic 25.0%
!! GAGTAATATTTTTCTGTGAA+TGG + chr3_2:71714721-71714740 Msa0422410:intron 25.0%
!!! TTTTAAAACTAAGCTGTCTT+TGG - chr3_2:71715043-71715062 None:intergenic 25.0%
!!! AAGACAGCTTAGTTTTAAAA+TGG + chr3_2:71715043-71715062 Msa0422410:exon 25.0%
! AATTTATTTGTAGGTGAGAT+AGG + chr3_2:71715114-71715133 Msa0422410:three_prime_UTR 25.0%
! AGAAAAAAATGGATAATGTG+TGG - chr3_2:71715177-71715196 None:intergenic 25.0%
! CTTAAAAAATAGTTACCATG+TGG + chr3_2:71715195-71715214 Msa0422410:three_prime_UTR 25.0%
!! TAAAGAGGACAACATTTTAA+CGG - chr3_2:71715260-71715279 None:intergenic 25.0%
!! TATGTCATCATAATCTGTTT+TGG + chr3_2:71715341-71715360 Msa0422410:three_prime_UTR 25.0%
AAATCATCTAACAACAACGA+CGG + chr3_2:71711374-71711393 Msa0422410:CDS 30.0%
TATTGAAGTAGATGTTGAAG+AGG - chr3_2:71711637-71711656 None:intergenic 30.0%
GAGAAAATAGATCTCATGAA+AGG - chr3_2:71711690-71711709 None:intergenic 30.0%
! TATGTTTTGTGTTTTCGCAA+CGG + chr3_2:71711747-71711766 Msa0422410:intron 30.0%
TGTTCTTGTAACCTTTATGT+GGG + chr3_2:71711871-71711890 Msa0422410:CDS 30.0%
AAAGAGAGAAGAAAATACCA+TGG - chr3_2:71711933-71711952 None:intergenic 30.0%
TCAATGTTTGTGTAACTGTA+TGG - chr3_2:71712008-71712027 None:intergenic 30.0%
TACTCACACAATTAAAGCTA+TGG + chr3_2:71712219-71712238 Msa0422410:CDS 30.0%
AGACTAATTACAGTAACCAA+TGG - chr3_2:71712335-71712354 None:intergenic 30.0%
AGTATGCATCAAACTATTAC+CGG + chr3_2:71712380-71712399 Msa0422410:intron 30.0%
AAGATTGTAGTGTAACATCA+AGG - chr3_2:71712473-71712492 None:intergenic 30.0%
TTGATGTTACACTACAATCT+TGG + chr3_2:71712472-71712491 Msa0422410:intron 30.0%
TTGTTCAAATTCTGCTATGA+TGG + chr3_2:71712649-71712668 Msa0422410:intron 30.0%
TCTGTTAGAAATCGAAACAA+TGG - chr3_2:71712758-71712777 None:intergenic 30.0%
ATTGTTTCGATTTCTAACAG+AGG + chr3_2:71712757-71712776 Msa0422410:intron 30.0%
!! GCTTTGATGGATTATTGAAT+AGG + chr3_2:71712962-71712981 Msa0422410:intron 30.0%
ACGTAATGTTCTTAGCAAAA+AGG + chr3_2:71713029-71713048 Msa0422410:CDS 30.0%
! TTGTTTCTTTCAGGAATCAT+TGG + chr3_2:71713163-71713182 Msa0422410:intron 30.0%
! TCTCGTTTGTTAAAGTTGAT+AGG + chr3_2:71713303-71713322 Msa0422410:CDS 30.0%
TACATTATCTTTCTTGACAG+GGG + chr3_2:71713383-71713402 Msa0422410:intron 30.0%
!! TTTTTCTGTTCTAGTCTTCT+AGG + chr3_2:71713484-71713503 Msa0422410:intron 30.0%
! TGTCCCTCTATTTTCTTTAA+AGG + chr3_2:71713515-71713534 Msa0422410:intron 30.0%
GACAAAGAACTATAAGCAAA+AGG - chr3_2:71713588-71713607 None:intergenic 30.0%
TGCTTATAGTTCTTTGTCTT+TGG + chr3_2:71713590-71713609 Msa0422410:intron 30.0%
! GAGTAATAGAGTACACTTTT+AGG + chr3_2:71713971-71713990 Msa0422410:intron 30.0%
! CTCGACTATAAATTTGCTTT+AGG - chr3_2:71714104-71714123 None:intergenic 30.0%
TCAAAGTTTACGGTGAAAAA+AGG - chr3_2:71714298-71714317 None:intergenic 30.0%
!!! TTTTTTCACCGTAAACTTTG+AGG + chr3_2:71714297-71714316 Msa0422410:intron 30.0%
!! GTTCAAAAGTATTCTAACGT+CGG - chr3_2:71714478-71714497 None:intergenic 30.0%
TGCATTGAAAGATAAGGAAA+TGG - chr3_2:71714500-71714519 None:intergenic 30.0%
! ATATGTCAGCATTTCTTTTC+AGG - chr3_2:71714613-71714632 None:intergenic 30.0%
AAAGAAATGCTGACATATGA+AGG + chr3_2:71714615-71714634 Msa0422410:intron 30.0%
AAGAAATGCTGACATATGAA+GGG + chr3_2:71714616-71714635 Msa0422410:intron 30.0%
TTTCTTACATGATATTGCAG+AGG + chr3_2:71714753-71714772 Msa0422410:CDS 30.0%
TTCTTACATGATATTGCAGA+GGG + chr3_2:71714754-71714773 Msa0422410:CDS 30.0%
ATTCAGAATTTGCAGCTATT+TGG - chr3_2:71715097-71715116 None:intergenic 30.0%
AGACATAATTGAAATCCACA+TGG - chr3_2:71715213-71715232 None:intergenic 30.0%
! TTTTCTCATATACCACATGA+AGG + chr3_2:71715284-71715303 Msa0422410:three_prime_UTR 30.0%
!!! GCGAGTGTTTTGAAGTTTAA+GGG - chr3_2:71711173-71711192 None:intergenic 35.0%
!! TGCATTTTGGAGATCTGAAA+CGG - chr3_2:71711263-71711282 None:intergenic 35.0%
! GTTGTTGTTAGATGATTTGG+CGG - chr3_2:71711372-71711391 None:intergenic 35.0%
! GTCGTTGTTGTTAGATGATT+TGG - chr3_2:71711375-71711394 None:intergenic 35.0%
GAATGAAGAAGAAGAAGAAG+AGG - chr3_2:71711423-71711442 None:intergenic 35.0%
GAATTTGAAAGAAGAGGAAG+AGG - chr3_2:71711474-71711493 None:intergenic 35.0%
AGGTCTGAATTTGAAAGAAG+AGG - chr3_2:71711480-71711499 None:intergenic 35.0%
! TTTTAGCAACGAACTAGACT+CGG - chr3_2:71711579-71711598 None:intergenic 35.0%
TTGCTAAAAACTCTTCAGCT+TGG + chr3_2:71711590-71711609 Msa0422410:CDS 35.0%
! ATGTGGATTTTCCTTTTTGC+AGG + chr3_2:71711790-71711809 Msa0422410:intron 35.0%
!! TTCCTTTTTGCAGGTTTTGA+AGG + chr3_2:71711799-71711818 Msa0422410:intron 35.0%
AGCAAATTGAACTACAGTCA+CGG - chr3_2:71711843-71711862 None:intergenic 35.0%
!! ACTGTAGTTCAATTTGCTGT+TGG + chr3_2:71711845-71711864 Msa0422410:CDS 35.0%
CTGTTCTTGTAACCTTTATG+TGG + chr3_2:71711870-71711889 Msa0422410:CDS 35.0%
! TAGATTTAGAGCCCACATAA+AGG - chr3_2:71711885-71711904 None:intergenic 35.0%
! CTTTTCACCAATATGAGTCT+TGG + chr3_2:71712178-71712197 Msa0422410:CDS 35.0%
GAAAGGATGACAGAAAAGAA+AGG - chr3_2:71712247-71712266 None:intergenic 35.0%
! TGTTGCAATCCATGATTTTG+CGG + chr3_2:71712424-71712443 Msa0422410:intron 35.0%
! CTGTGGATTGCATAAAACAA+TGG + chr3_2:71712550-71712569 Msa0422410:intron 35.0%
TTACTGAAGCCTCTTTCAAT+TGG + chr3_2:71712841-71712860 Msa0422410:CDS 35.0%
CAGATCTTACCAATTGAAAG+AGG - chr3_2:71712853-71712872 None:intergenic 35.0%
TGTTCTTAGCAAAAAGGTCA+TGG + chr3_2:71713035-71713054 Msa0422410:CDS 35.0%
GCAAGAGGTAATATGATCTT+TGG + chr3_2:71713062-71713081 Msa0422410:intron 35.0%
TGATAGGATTGTTGTATCAC+AGG + chr3_2:71713319-71713338 Msa0422410:CDS 35.0%
GACACTTAAGATGAGAATGA+GGG - chr3_2:71713710-71713729 None:intergenic 35.0%
TGACACTTAAGATGAGAATG+AGG - chr3_2:71713711-71713730 None:intergenic 35.0%
!! ATGAGGGCATTAGTAGAAAA+AGG - chr3_2:71713796-71713815 None:intergenic 35.0%
AAGAAACACTTAAATTGGGG+TGG + chr3_2:71713938-71713957 Msa0422410:intron 35.0%
TTTAGGCCTCTAAACATGTT+GGG - chr3_2:71714087-71714106 None:intergenic 35.0%
GCTTAAGTGTAACATAGGAT+AGG - chr3_2:71714387-71714406 None:intergenic 35.0%
TCCTATGTTACACTTAAGCA+TGG + chr3_2:71714388-71714407 Msa0422410:intron 35.0%
ACCATGCTTAAGTGTAACAT+AGG - chr3_2:71714392-71714411 None:intergenic 35.0%
CAACAGTGCATTGAAAGATA+AGG - chr3_2:71714506-71714525 None:intergenic 35.0%
!!! TCAGCATTTCTTTTCAGGTT+AGG - chr3_2:71714608-71714627 None:intergenic 35.0%
GACATATGAAGGGAAAATAG+TGG + chr3_2:71714626-71714645 Msa0422410:intron 35.0%
!! TCTTTACCAAAAGCATTCAC+AGG - chr3_2:71714869-71714888 None:intergenic 35.0%
TGGTAAAGATTGCTTCTTTC+TGG + chr3_2:71714880-71714899 Msa0422410:intron 35.0%
TTGTAGGTGAGATAGGAATA+TGG + chr3_2:71715121-71715140 Msa0422410:three_prime_UTR 35.0%
TGTAGGTGAGATAGGAATAT+GGG + chr3_2:71715122-71715141 Msa0422410:three_prime_UTR 35.0%
AAAATGGATAATGTGTGGCA+TGG - chr3_2:71715172-71715191 None:intergenic 35.0%
ATCAAAATCACACCTTCATG+TGG - chr3_2:71715299-71715318 None:intergenic 35.0%
ACAATGCAAGTTATTCTGCT+TGG + chr3_2:71715369-71715388 Msa0422410:three_prime_UTR 35.0%
! AAGTTATTCTGCTTGGTGAT+TGG + chr3_2:71715376-71715395 Msa0422410:three_prime_UTR 35.0%
!!! GGCGAGTGTTTTGAAGTTTA+AGG - chr3_2:71711174-71711193 None:intergenic 40.0%
CTTCATTCACTCGTCAATCA+TGG + chr3_2:71711435-71711454 Msa0422410:CDS 40.0%
TTGAAAGAAGAGGAAGAGGA+AGG - chr3_2:71711470-71711489 None:intergenic 40.0%
TTGGATCCTTGTTCGGTTTA+TGG + chr3_2:71711609-71711628 Msa0422410:CDS 40.0%
TGCCTTCAAAACCTGCAAAA+AGG - chr3_2:71711804-71711823 None:intergenic 40.0%
!! GGGCTCTAAATCTATACAAG+AGG + chr3_2:71711891-71711910 Msa0422410:CDS 40.0%
TACAAGAGGCCTAAAATCAC+TGG + chr3_2:71711905-71711924 Msa0422410:CDS 40.0%
AAAGTATGCACAATAGCGAG+TGG - chr3_2:71712151-71712170 None:intergenic 40.0%
ACTCGCTATTGTGCATACTT+TGG + chr3_2:71712150-71712169 Msa0422410:CDS 40.0%
CTCGCTATTGTGCATACTTT+GGG + chr3_2:71712151-71712170 Msa0422410:CDS 40.0%
TCGCTATTGTGCATACTTTG+GGG + chr3_2:71712152-71712171 Msa0422410:CDS 40.0%
CACCAATATGAGTCTTGGAA+AGG + chr3_2:71712183-71712202 Msa0422410:CDS 40.0%
CACCTTTCCAAGACTCATAT+TGG - chr3_2:71712188-71712207 None:intergenic 40.0%
CAATATGAGTCTTGGAAAGG+TGG + chr3_2:71712186-71712205 Msa0422410:CDS 40.0%
ATCCTTTCTGCAATGTTCCT+TGG + chr3_2:71712259-71712278 Msa0422410:CDS 40.0%
! TTTTTCCCGCAATATGCCAT+TGG + chr3_2:71712316-71712335 Msa0422410:intron 40.0%
AGTAACCAATGGCATATTGC+GGG - chr3_2:71712324-71712343 None:intergenic 40.0%
CAGTAACCAATGGCATATTG+CGG - chr3_2:71712325-71712344 None:intergenic 40.0%
TGGTACAATGTTGTCAACTG+TGG + chr3_2:71712533-71712552 Msa0422410:intron 40.0%
AACAAATAGCGGCCATATAG+CGG - chr3_2:71712588-71712607 None:intergenic 40.0%
!! GATGGATTATTGAATAGGGC+TGG + chr3_2:71712967-71712986 Msa0422410:intron 40.0%
TGCTAAGAACATTACGTGAC+TGG - chr3_2:71713026-71713045 None:intergenic 40.0%
AAAGGTCATGGTTAAGCAAG+AGG + chr3_2:71713047-71713066 Msa0422410:CDS 40.0%
!! TCTTCTTGAATGGGAGCATT+AGG - chr3_2:71713094-71713113 None:intergenic 40.0%
TTATCTTTCTTGACAGGGGT+TGG + chr3_2:71713387-71713406 Msa0422410:intron 40.0%
TGAAGTTGCAAGAACCTGAT+AGG + chr3_2:71713545-71713564 Msa0422410:intron 40.0%
GAAGTTGCAAGAACCTGATA+GGG + chr3_2:71713546-71713565 Msa0422410:intron 40.0%
AAGTTGCAAGAACCTGATAG+GGG + chr3_2:71713547-71713566 Msa0422410:intron 40.0%
! ATAACTGTCTGCTACTTGCT+GGG + chr3_2:71713652-71713671 Msa0422410:intron 40.0%
! TGCTTGCTAGACTAAACTCT+AGG + chr3_2:71714019-71714038 Msa0422410:intron 40.0%
TTGCTAGACTAAACTCTAGG+TGG + chr3_2:71714022-71714041 Msa0422410:intron 40.0%
TTAGGCCTCTAAACATGTTG+GGG - chr3_2:71714086-71714105 None:intergenic 40.0%
CTTTAGGCCTCTAAACATGT+TGG - chr3_2:71714088-71714107 None:intergenic 40.0%
AGCCTCTTGACTAACTAAGT+TGG + chr3_2:71714210-71714229 Msa0422410:intron 40.0%
GCCTCTTGACTAACTAAGTT+GGG + chr3_2:71714211-71714230 Msa0422410:intron 40.0%
TCCCAACTTAGTTAGTCAAG+AGG - chr3_2:71714215-71714234 None:intergenic 40.0%
! CAGGTGATTTTCTGTCAAGA+TGG - chr3_2:71714530-71714549 None:intergenic 40.0%
! TGGCGTTTTCTTCTACTCAA+GGG + chr3_2:71714997-71715016 Msa0422410:CDS 40.0%
GTAGGTGAGATAGGAATATG+GGG + chr3_2:71715123-71715142 Msa0422410:three_prime_UTR 40.0%
! ACAATGTTTGGTGAGGGAGT+TGG - chr3_2:71711117-71711136 None:intergenic 45.0%
! CCAGCAACAATGTTTGGTGA+GGG - chr3_2:71711123-71711142 None:intergenic 45.0%
! ACCAGCAACAATGTTTGGTG+AGG - chr3_2:71711124-71711143 None:intergenic 45.0%
TCACCAAACATTGTTGCTGG+TGG + chr3_2:71711123-71711142 Msa0422410:five_prime_UTR 45.0%
! TGGAGATCTGAAACGGAAGA+TGG - chr3_2:71711256-71711275 None:intergenic 45.0%
! GTTGTTAGATGATTTGGCGG+CGG - chr3_2:71711369-71711388 None:intergenic 45.0%
AACGACGGCGTAAATCTCAA+TGG + chr3_2:71711389-71711408 Msa0422410:CDS 45.0%
GAAGTAGGAACAAGAGGAAG+AGG - chr3_2:71711500-71711519 None:intergenic 45.0%
AGATCGGAAGTAGGAACAAG+AGG - chr3_2:71711506-71711525 None:intergenic 45.0%
CTTCAGCTTGGATCCTTGTT+CGG + chr3_2:71711602-71711621 Msa0422410:CDS 45.0%
! GAGGTACCATAAACCGAACA+AGG - chr3_2:71711618-71711637 None:intergenic 45.0%
GAACTACAGTCACGGTTACA+GGG - chr3_2:71711835-71711854 None:intergenic 45.0%
TGAACTACAGTCACGGTTAC+AGG - chr3_2:71711836-71711855 None:intergenic 45.0%
! ACCATGGCACCAGTGATTTT+AGG - chr3_2:71711917-71711936 None:intergenic 45.0%
CTCCAAGGAACATTGCAGAA+AGG - chr3_2:71712264-71712283 None:intergenic 45.0%
TTCTGCAATGTTCCTTGGAG+AGG + chr3_2:71712264-71712283 Msa0422410:CDS 45.0%
TTAGCACTCTAACCTCTCCA+AGG - chr3_2:71712279-71712298 None:intergenic 45.0%
AGTTCGCAACCGCAAAATCA+TGG - chr3_2:71712436-71712455 None:intergenic 45.0%
! ATTTTGCGGTTGCGAACTCA+AGG + chr3_2:71712438-71712457 Msa0422410:intron 45.0%
AGTGCAACTCCACCAACAAT+AGG - chr3_2:71712813-71712832 None:intergenic 45.0%
! TATTGTTGGTGGAGTTGCAC+TGG + chr3_2:71712812-71712831 Msa0422410:CDS 45.0%
ATGTGTCCTGTTCCTTCTAG+AGG + chr3_2:71712873-71712892 Msa0422410:intron 45.0%
!! CTTCTAGAGGTAGTGGAGAA+GGG + chr3_2:71712886-71712905 Msa0422410:intron 45.0%
!! ACGTGACTGGTTTGTCACAT+TGG - chr3_2:71713013-71713032 None:intergenic 45.0%
AGATACTCACAGCAGATTGC+AGG - chr3_2:71713286-71713305 None:intergenic 45.0%
! AACTCACTTGCTGATACGCA+TGG - chr3_2:71713459-71713478 None:intergenic 45.0%
! CATAACTGTCTGCTACTTGC+TGG + chr3_2:71713651-71713670 Msa0422410:intron 45.0%
TGTACTCTATTACTCCCTCC+AGG - chr3_2:71713966-71713985 None:intergenic 45.0%
! TTGCTGCTCAATGCATTGAC+TGG + chr3_2:71713996-71714015 Msa0422410:intron 45.0%
ATCAAATTCTGCCGAGTCCA+AGG + chr3_2:71714169-71714188 Msa0422410:intron 45.0%
ACATCTCCCTGTTCAAACCT+TGG - chr3_2:71714189-71714208 None:intergenic 45.0%
GACTAGGGCCTCAAAGTTTA+CGG - chr3_2:71714308-71714327 None:intergenic 45.0%
!! TAAACTTTGAGGCCCTAGTC+TGG + chr3_2:71714308-71714327 Msa0422410:intron 45.0%
!! AAACTTTGAGGCCCTAGTCT+GGG + chr3_2:71714309-71714328 Msa0422410:intron 45.0%
!! TTTTCTGTGAATGGGCTTGC+AGG + chr3_2:71714730-71714749 Msa0422410:intron 45.0%
CAATTGTGTGAAGCGTGTTG+TGG + chr3_2:71714802-71714821 Msa0422410:CDS 45.0%
! AAAGCATTCACAGGAGAGAC+AGG - chr3_2:71714860-71714879 None:intergenic 45.0%
! GTCTCTCCTGTGAATGCTTT+TGG + chr3_2:71714860-71714879 Msa0422410:CDS 45.0%
! CTGGCGTTTTCTTCTACTCA+AGG + chr3_2:71714996-71715015 Msa0422410:CDS 45.0%
ATAATGTGTGGCATGGCATG+GGG - chr3_2:71715165-71715184 None:intergenic 45.0%
GATAATGTGTGGCATGGCAT+GGG - chr3_2:71715166-71715185 None:intergenic 45.0%
!!! TGTTTTTATTTATTTTAAAA+AGG - chr3_2:71714127-71714146 None:intergenic 5.0%
CCCTCACCAAACATTGTTGC+TGG + chr3_2:71711120-71711139 Msa0422410:five_prime_UTR 50.0%
CCAAACATTGTTGCTGGTGG+CGG + chr3_2:71711126-71711145 Msa0422410:five_prime_UTR 50.0%
TGAGTCTCTCTCTCTCTCTG+GGG - chr3_2:71711195-71711214 None:intergenic 50.0%
GTGAGTCTCTCTCTCTCTCT+GGG - chr3_2:71711196-71711215 None:intergenic 50.0%
AGTGAGTCTCTCTCTCTCTC+TGG - chr3_2:71711197-71711216 None:intergenic 50.0%
!! GAAGGCTGTGGACTGCATTT+TGG - chr3_2:71711276-71711295 None:intergenic 50.0%
!! GGTTAAGGGAGCGTCTGAAA+CGG - chr3_2:71711337-71711356 None:intergenic 50.0%
AGAGGAAGAGGAAGGAGACA+TGG - chr3_2:71711462-71711481 None:intergenic 50.0%
GGAGGAGAAAGATCGGAAGT+AGG - chr3_2:71711515-71711534 None:intergenic 50.0%
GGCTTGAGGAGGAGAAAGAT+CGG - chr3_2:71711522-71711541 None:intergenic 50.0%
TAGCAACGAACTAGACTCGG+CGG - chr3_2:71711576-71711595 None:intergenic 50.0%
! GCCTAAAATCACTGGTGCCA+TGG + chr3_2:71711913-71711932 Msa0422410:CDS 50.0%
ACGAGTGAACCAATCACCCA+GGG - chr3_2:71712789-71712808 None:intergenic 50.0%
GGTTCACTCGTGCCTATTGT+TGG + chr3_2:71712798-71712817 Msa0422410:CDS 50.0%
TCACTCGTGCCTATTGTTGG+TGG + chr3_2:71712801-71712820 Msa0422410:CDS 50.0%
! CCACTACCTCTAGAAGGAAC+AGG - chr3_2:71712882-71712901 None:intergenic 50.0%
! CCTGTTCCTTCTAGAGGTAG+TGG + chr3_2:71712879-71712898 Msa0422410:intron 50.0%
CCTTCTCCACTACCTCTAGA+AGG - chr3_2:71712888-71712907 None:intergenic 50.0%
!! CCTTCTAGAGGTAGTGGAGA+AGG + chr3_2:71712885-71712904 Msa0422410:intron 50.0%
!! GAGGTAGTGGAGAAGGGATA+TGG + chr3_2:71712892-71712911 Msa0422410:intron 50.0%
ACCCTCCATGAAGATAGCTG+CGG - chr3_2:71713243-71713262 None:intergenic 50.0%
AGCAGATTGCAGGTAAGCAG+GGG - chr3_2:71713276-71713295 None:intergenic 50.0%
CAGCAGATTGCAGGTAAGCA+GGG - chr3_2:71713277-71713296 None:intergenic 50.0%
ACAGCAGATTGCAGGTAAGC+AGG - chr3_2:71713278-71713297 None:intergenic 50.0%
GAGTGCAGCAAGAAGAGATC+TGG - chr3_2:71713431-71713450 None:intergenic 50.0%
TTGCAAGAACCTGATAGGGG+AGG + chr3_2:71713550-71713569 Msa0422410:intron 50.0%
!! GTTGATTAGCCTCCCCTATC+AGG - chr3_2:71713562-71713581 None:intergenic 50.0%
ACTTAAATTGGGGTGGAGCC+TGG + chr3_2:71713945-71713964 Msa0422410:intron 50.0%
CCCTGTTCAAACCTTGGACT+CGG - chr3_2:71714183-71714202 None:intergenic 50.0%
CCGAGTCCAAGGTTTGAACA+GGG + chr3_2:71714180-71714199 Msa0422410:intron 50.0%
! TACTTGGCTCTTCGGCTCTT+CGG + chr3_2:71714333-71714352 Msa0422410:intron 50.0%
! GCTGCATGTTTCTGACAGTG+TGG + chr3_2:71714418-71714437 Msa0422410:intron 50.0%
CACACAATTGCCGACGGAAT+GGG - chr3_2:71714792-71714811 None:intergenic 50.0%
TCACACAATTGCCGACGGAA+TGG - chr3_2:71714793-71714812 None:intergenic 50.0%
ACGCTTCACACAATTGCCGA+CGG - chr3_2:71714798-71714817 None:intergenic 50.0%
AACGCCAGCAAGAGCTATAG+CGG - chr3_2:71714984-71715003 None:intergenic 50.0%
GGATAATGTGTGGCATGGCA+TGG - chr3_2:71715167-71715186 None:intergenic 50.0%
CCGCCACCAGCAACAATGTT+TGG - chr3_2:71711129-71711148 None:intergenic 55.0%
!! TGAAACGGTTGGGGTTGGTG+TGG - chr3_2:71711322-71711341 None:intergenic 55.0%
!! AGGGAGCGTCTGAAACGGTT+GGG - chr3_2:71711332-71711351 None:intergenic 55.0%
!! AAGGGAGCGTCTGAAACGGT+TGG - chr3_2:71711333-71711352 None:intergenic 55.0%
! ATGATTTGGCGGCGGAGAGA+CGG - chr3_2:71711361-71711380 None:intergenic 55.0%
TCTAACAGAGGCCTACACCC+TGG + chr3_2:71712769-71712788 Msa0422410:intron 55.0%
CTAACAGAGGCCTACACCCT+GGG + chr3_2:71712770-71712789 Msa0422410:intron 55.0%
GAACCAATCACCCAGGGTGT+AGG - chr3_2:71712783-71712802 None:intergenic 55.0%
CACGAGTGAACCAATCACCC+AGG - chr3_2:71712790-71712809 None:intergenic 55.0%
GGCTGGATTTGCGAGTGCAA+TGG + chr3_2:71712984-71713003 Msa0422410:CDS 55.0%
AGCTCCCGCAGCTATCTTCA+TGG + chr3_2:71713235-71713254 Msa0422410:CDS 55.0%
TCCCGCAGCTATCTTCATGG+AGG + chr3_2:71713238-71713257 Msa0422410:CDS 55.0%
CCCTCCATGAAGATAGCTGC+GGG - chr3_2:71713242-71713261 None:intergenic 55.0%
CCCGCAGCTATCTTCATGGA+GGG + chr3_2:71713239-71713258 Msa0422410:CDS 55.0%
TAAATTGGGGTGGAGCCTGG+AGG + chr3_2:71713948-71713967 Msa0422410:intron 55.0%
AAATTGGGGTGGAGCCTGGA+GGG + chr3_2:71713949-71713968 Msa0422410:intron 55.0%
GGTCGCCCCAACATGTTTAG+AGG + chr3_2:71714078-71714097 Msa0422410:intron 55.0%
GCCGAGTCCAAGGTTTGAAC+AGG + chr3_2:71714179-71714198 Msa0422410:intron 55.0%
GAGCCAAGTAGCCCAGACTA+GGG - chr3_2:71714323-71714342 None:intergenic 55.0%
AGAGCCAAGTAGCCCAGACT+AGG - chr3_2:71714324-71714343 None:intergenic 55.0%
! GTCTGGGCTACTTGGCTCTT+CGG + chr3_2:71714325-71714344 Msa0422410:intron 55.0%
TCCCCTGTTACCCATTCCGT+CGG + chr3_2:71714779-71714798 Msa0422410:CDS 55.0%
TGCCGACGGAATGGGTAACA+GGG - chr3_2:71714784-71714803 None:intergenic 55.0%
TTGCCGACGGAATGGGTAAC+AGG - chr3_2:71714785-71714804 None:intergenic 55.0%
GGTACCGCTATAGCTCTTGC+TGG + chr3_2:71714977-71714996 Msa0422410:intron 55.0%
GCATGGCATGGGGTCAAGAA+AGG - chr3_2:71715155-71715174 None:intergenic 55.0%
AGGGGAGAGAGTGAAGGCTG+TGG - chr3_2:71711288-71711307 None:intergenic 60.0%
GAGGGTAGGGGAGAGAGTGA+AGG - chr3_2:71711294-71711313 None:intergenic 60.0%
TGGTGTGGAGAGGGAGGGTA+GGG - chr3_2:71711307-71711326 None:intergenic 60.0%
TTGGTGTGGAGAGGGAGGGT+AGG - chr3_2:71711308-71711327 None:intergenic 60.0%
!! GGTTGGGGTTGGTGTGGAGA+GGG - chr3_2:71711316-71711335 None:intergenic 60.0%
! GCGTCTGAAACGGTTGGGGT+TGG - chr3_2:71711327-71711346 None:intergenic 60.0%
!! GGGAGCGTCTGAAACGGTTG+GGG - chr3_2:71711331-71711350 None:intergenic 60.0%
GGCGGAGAGACGGAGGTTAA+GGG - chr3_2:71711351-71711370 None:intergenic 60.0%
CAACGAACTAGACTCGGCGG+CGG - chr3_2:71711573-71711592 None:intergenic 60.0%
AGGCCTACACCCTGGGTGAT+TGG + chr3_2:71712777-71712796 Msa0422410:CDS 60.0%
AGGCCCTAGTCTGGGCTACT+TGG + chr3_2:71714317-71714336 Msa0422410:intron 60.0%
GCCGACGGAATGGGTAACAG+GGG - chr3_2:71714783-71714802 None:intergenic 60.0%
!! TGCTGGTGGCGGACTACACG+AGG + chr3_2:71711137-71711156 Msa0422410:five_prime_UTR 65.0%
!! GCTGGTGGCGGACTACACGA+GGG + chr3_2:71711138-71711157 Msa0422410:five_prime_UTR 65.0%
GGTGTGGAGAGGGAGGGTAG+GGG - chr3_2:71711306-71711325 None:intergenic 65.0%
!! GGGGTTGGTGTGGAGAGGGA+GGG - chr3_2:71711312-71711331 None:intergenic 65.0%
!! TGGGGTTGGTGTGGAGAGGG+AGG - chr3_2:71711313-71711332 None:intergenic 65.0%
!! CGGTTGGGGTTGGTGTGGAG+AGG - chr3_2:71711317-71711336 None:intergenic 65.0%
CGGCGGAGAGACGGAGGTTA+AGG - chr3_2:71711352-71711371 None:intergenic 65.0%
ATTTGGCGGCGGAGAGACGG+AGG - chr3_2:71711358-71711377 None:intergenic 65.0%
GGGACGGAAGTGGCTTGAGG+AGG - chr3_2:71711533-71711552 None:intergenic 65.0%
TCGGGGACGGAAGTGGCTTG+AGG - chr3_2:71711536-71711555 None:intergenic 65.0%
AGCGCTTTCGGGGACGGAAG+TGG - chr3_2:71711543-71711562 None:intergenic 65.0%
! ACTTCCGTCCCCGAAAGCGC+TGG + chr3_2:71711542-71711561 Msa0422410:CDS 65.0%
GTCACCAGCGCTTTCGGGGA+CGG - chr3_2:71711549-71711568 None:intergenic 65.0%
CGGAGTCACCAGCGCTTTCG+GGG - chr3_2:71711553-71711572 None:intergenic 65.0%
GCGGAGTCACCAGCGCTTTC+GGG - chr3_2:71711554-71711573 None:intergenic 65.0%
GGCGGAGTCACCAGCGCTTT+CGG - chr3_2:71711555-71711574 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 71711088 71715488 71711088 ID=Msa0422410;Name=Msa0422410
chr3_2 mRNA 71711088 71715488 71711088 ID=Msa0422410-mRNA-1;Parent=Msa0422410;Name=Msa0422410-mRNA-1;_AED=0.08;_eAED=0.08;_QI=190|0.87|0.88|1|1|1|9|434|426
chr3_2 exon 71711088 71711670 71711088 ID=Msa0422410-mRNA-1:exon:17535;Parent=Msa0422410-mRNA-1
chr3_2 exon 71711812 71711934 71711812 ID=Msa0422410-mRNA-1:exon:17536;Parent=Msa0422410-mRNA-1
chr3_2 exon 71712133 71712285 71712133 ID=Msa0422410-mRNA-1:exon:17537;Parent=Msa0422410-mRNA-1
chr3_2 exon 71712777 71712862 71712777 ID=Msa0422410-mRNA-1:exon:17538;Parent=Msa0422410-mRNA-1
chr3_2 exon 71712984 71713068 71712984 ID=Msa0422410-mRNA-1:exon:17539;Parent=Msa0422410-mRNA-1
chr3_2 exon 71713176 71713340 71713176 ID=Msa0422410-mRNA-1:exon:17540;Parent=Msa0422410-mRNA-1
chr3_2 exon 71713403 71713471 71713403 ID=Msa0422410-mRNA-1:exon:17541;Parent=Msa0422410-mRNA-1
chr3_2 exon 71714752 71714881 71714752 ID=Msa0422410-mRNA-1:exon:17542;Parent=Msa0422410-mRNA-1
chr3_2 exon 71714978 71715488 71714978 ID=Msa0422410-mRNA-1:exon:17543;Parent=Msa0422410-mRNA-1
chr3_2 five_prime_UTR 71711088 71711277 71711088 ID=Msa0422410-mRNA-1:five_prime_utr;Parent=Msa0422410-mRNA-1
chr3_2 CDS 71711278 71711670 71711278 ID=Msa0422410-mRNA-1:cds;Parent=Msa0422410-mRNA-1
chr3_2 CDS 71711812 71711934 71711812 ID=Msa0422410-mRNA-1:cds;Parent=Msa0422410-mRNA-1
chr3_2 CDS 71712133 71712285 71712133 ID=Msa0422410-mRNA-1:cds;Parent=Msa0422410-mRNA-1
chr3_2 CDS 71712777 71712862 71712777 ID=Msa0422410-mRNA-1:cds;Parent=Msa0422410-mRNA-1
chr3_2 CDS 71712984 71713068 71712984 ID=Msa0422410-mRNA-1:cds;Parent=Msa0422410-mRNA-1
chr3_2 CDS 71713176 71713340 71713176 ID=Msa0422410-mRNA-1:cds;Parent=Msa0422410-mRNA-1
chr3_2 CDS 71713403 71713471 71713403 ID=Msa0422410-mRNA-1:cds;Parent=Msa0422410-mRNA-1
chr3_2 CDS 71714752 71714881 71714752 ID=Msa0422410-mRNA-1:cds;Parent=Msa0422410-mRNA-1
chr3_2 CDS 71714978 71715054 71714978 ID=Msa0422410-mRNA-1:cds;Parent=Msa0422410-mRNA-1
chr3_2 three_prime_UTR 71715055 71715488 71715055 ID=Msa0422410-mRNA-1:three_prime_utr;Parent=Msa0422410-mRNA-1
Gene Sequence

>Msa0422410

ATGCAGTCCACAGCCTTCACTCTCTCCCCTACCCTCCCTCTCCACACCAACCCCAACCGTTTCAGACGCTCCCTTAACCTCCGTCTCTCCGCCGCCAAATCATCTAACAACAACGACGGCGTAAATCTCAATGGTGTCTCTTCCTCTTCTTCTTCTTCTTCATTCACTCGTCAATCATGGTCCATGTCTCCTTCCTCTTCCTCTTCTTTCAAATTCAGACCTCTTCCTCTTGTTCCTACTTCCGATCTTTCTCCTCCTCAAGCCACTTCCGTCCCCGAAAGCGCTGGTGACTCCGCCGCCGAGTCTAGTTCGTTGCTAAAAACTCTTCAGCTTGGATCCTTGTTCGGTTTATGGTACCTCTTCAACATCTACTTCAATATTTACAACAAACAGGTTTTGAAGGCATGTCATTTCCCTGTAACCGTGACTGTAGTTCAATTTGCTGTTGGAACTGTTCTTGTAACCTTTATGTGGGCTCTAAATCTATACAAGAGGCCTAAAATCACTGGTGCCATGCTTGCAGCAATATTTCCACTCGCTATTGTGCATACTTTGGGGAATCTTTTCACCAATATGAGTCTTGGAAAGGTGGCTGTGTCATTTACTCACACAATTAAAGCTATGGAGCCTTTCTTTTCTGTCATCCTTTCTGCAATGTTCCTTGGAGAGAGGCCTACACCCTGGGTGATTGGTTCACTCGTGCCTATTGTTGGTGGAGTTGCACTGGCGTCTATTACTGAAGCCTCTTTCAATTGGGCTGGATTTGCGAGTGCAATGGCTTCCAATGTGACAAACCAGTCACGTAATGTTCTTAGCAAAAAGGTCATGGTTAAGCAAGAGGAATCATTGGACAACATAACTCTCTTCTCTATAATTACAATAATGTCTTTCTTCTTGTTAGCTCCCGCAGCTATCTTCATGGAGGGTGTTAAATTTACCCCTGCTTACCTGCAATCTGCTGTGAGTATCTCGTTTGTTAAAGTTGATAGGATTGTTGTATCACAGGGGTTGGATGTTAGACAAGTGTACACCAGATCTCTTCTTGCTGCACTCTGTTTCCATGCGTATCAGCAAGTTTCTTACATGATATTGCAGAGGGTATCCCCTGTTACCCATTCCGTCGGCAATTGTGTGAAGCGTGTTGTGGTCATTGTGAGCTCTGTCATCATCTTCAAAACACCTGTCTCTCCTGTGAATGCTTTTGGTACCGCTATAGCTCTTGCTGGCGTTTTCTTCTACTCAAGGGTGAAGCGAATTAAGTCAAAGCCAAAGACAGCTTAG

Protein sequence

>Msa0422410

MQSTAFTLSPTLPLHTNPNRFRRSLNLRLSAAKSSNNNDGVNLNGVSSSSSSSSFTRQSWSMSPSSSSSFKFRPLPLVPTSDLSPPQATSVPESAGDSAAESSSLLKTLQLGSLFGLWYLFNIYFNIYNKQVLKACHFPVTVTVVQFAVGTVLVTFMWALNLYKRPKITGAMLAAIFPLAIVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVILSAMFLGERPTPWVIGSLVPIVGGVALASITEASFNWAGFASAMASNVTNQSRNVLSKKVMVKQEESLDNITLFSIITIMSFFLLAPAAIFMEGVKFTPAYLQSAVSISFVKVDRIVVSQGLDVRQVYTRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIIFKTPVSPVNAFGTAIALAGVFFYSRVKRIKSKPKTA*