Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0422410 | XP_024635366.1 | 94.836 | 426 | 6 | 2 | 1 | 426 | 1 | 410 | 0.0 | 800 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0422410 | sp|Q8RXN3|PPT1_ARATH | 67.053 | 431 | 114 | 7 | 1 | 426 | 1 | 408 | 0.0 | 531 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0422410 | G7J5E5 | 94.836 | 426 | 6 | 2 | 1 | 426 | 1 | 410 | 0.0 | 800 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0422410 | Msa0450250 | 0.937913 | 1.597205e-98 | -8.615850e-47 |
Msa0422410 | Msa0511120 | 0.940576 | 1.841384e-100 | -8.615850e-47 |
Msa0422410 | Msa0511200 | 0.940635 | 1.663645e-100 | -8.615850e-47 |
Msa0422410 | Msa0578970 | -0.806437 | 8.231501e-50 | -8.615850e-47 |
Msa0422410 | Msa0610590 | -0.803377 | 3.588309e-49 | -8.615850e-47 |
Msa0422410 | Msa0876850 | 0.824152 | 9.422321e-54 | -8.615850e-47 |
Msa0422410 | Msa0942080 | 0.827606 | 1.426134e-54 | -8.615850e-47 |
Msa0422410 | Msa1316560 | 0.815081 | 1.109473e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0422410 | MtrunA17_Chr3g0117501 | 94.836 | 426 | 6 | 2 | 1 | 426 | 1 | 410 | 0.0 | 800 |
Msa0422410 | MtrunA17_Chr4g0058971 | 74.766 | 321 | 64 | 2 | 105 | 425 | 79 | 382 | 6.18e-174 | 491 |
Msa0422410 | MtrunA17_Chr6g0449891 | 67.751 | 338 | 97 | 1 | 88 | 425 | 90 | 415 | 3.88e-158 | 452 |
Msa0422410 | MtrunA17_Chr2g0288011 | 39.335 | 361 | 187 | 6 | 73 | 418 | 52 | 395 | 2.61e-66 | 217 |
Msa0422410 | MtrunA17_Chr3g0097931 | 39.233 | 339 | 188 | 4 | 81 | 418 | 80 | 401 | 1.14e-65 | 215 |
Msa0422410 | MtrunA17_Chr2g0291851 | 40.588 | 340 | 179 | 5 | 82 | 415 | 70 | 392 | 3.92e-65 | 214 |
Msa0422410 | MtrunA17_Chr4g0046561 | 37.822 | 349 | 193 | 7 | 83 | 426 | 69 | 398 | 8.68e-65 | 213 |
Msa0422410 | MtrunA17_Chr4g0074541 | 40.533 | 338 | 178 | 4 | 81 | 418 | 78 | 392 | 2.47e-62 | 206 |
Msa0422410 | MtrunA17_Chr5g0419001 | 34.606 | 393 | 226 | 5 | 48 | 426 | 28 | 403 | 3.26e-62 | 206 |
Msa0422410 | MtrunA17_Chr3g0114581 | 29.204 | 339 | 193 | 15 | 101 | 422 | 3 | 311 | 6.48e-23 | 99.0 |
Msa0422410 | MtrunA17_Chr1g0160071 | 29.042 | 334 | 185 | 15 | 104 | 422 | 14 | 310 | 2.54e-21 | 94.4 |
Msa0422410 | MtrunA17_Chr4g0008071 | 25.723 | 311 | 198 | 6 | 118 | 418 | 20 | 307 | 1.08e-18 | 86.3 |
Msa0422410 | MtrunA17_Chr3g0112981 | 26.667 | 240 | 159 | 3 | 179 | 418 | 97 | 319 | 1.02e-17 | 83.6 |
Msa0422410 | MtrunA17_Chr5g0436341 | 26.613 | 248 | 159 | 4 | 171 | 418 | 79 | 303 | 3.25e-16 | 79.0 |
Msa0422410 | MtrunA17_Chr8g0382081 | 25.439 | 228 | 153 | 2 | 191 | 418 | 96 | 306 | 4.20e-15 | 75.9 |
Msa0422410 | MtrunA17_Chr4g0056661 | 25.703 | 249 | 163 | 4 | 176 | 422 | 122 | 350 | 1.61e-11 | 65.5 |
Msa0422410 | MtrunA17_Chr2g0307091 | 23.599 | 339 | 221 | 10 | 100 | 426 | 2 | 314 | 7.06e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0422410 | AT5G33320.1 | 67.053 | 431 | 114 | 7 | 1 | 426 | 1 | 408 | 0.0 | 531 |
Msa0422410 | AT3G01550.1 | 60.534 | 337 | 120 | 2 | 87 | 423 | 55 | 378 | 1.45e-134 | 392 |
Msa0422410 | AT3G01550.2 | 59.347 | 337 | 119 | 3 | 87 | 423 | 55 | 373 | 2.35e-128 | 375 |
Msa0422410 | AT5G17630.1 | 39.503 | 362 | 197 | 5 | 63 | 422 | 67 | 408 | 4.58e-74 | 238 |
Msa0422410 | AT5G54800.1 | 40.483 | 331 | 178 | 3 | 90 | 417 | 73 | 387 | 5.11e-68 | 221 |
Msa0422410 | AT1G61800.1 | 39.437 | 355 | 190 | 5 | 65 | 418 | 58 | 388 | 3.20e-66 | 216 |
Msa0422410 | AT1G61800.2 | 39.437 | 355 | 190 | 5 | 65 | 418 | 58 | 388 | 5.55e-66 | 216 |
Msa0422410 | AT5G46110.4 | 35.580 | 371 | 206 | 8 | 68 | 424 | 54 | 405 | 3.40e-64 | 212 |
Msa0422410 | AT5G46110.1 | 35.389 | 373 | 208 | 8 | 68 | 426 | 54 | 407 | 3.54e-64 | 212 |
Msa0422410 | AT5G46110.2 | 37.942 | 311 | 171 | 6 | 117 | 424 | 1 | 292 | 2.25e-62 | 204 |
Msa0422410 | AT5G46110.3 | 34.316 | 373 | 201 | 9 | 68 | 426 | 54 | 396 | 1.38e-58 | 197 |
Msa0422410 | AT1G21870.1 | 28.657 | 335 | 189 | 13 | 104 | 424 | 15 | 313 | 5.75e-23 | 99.8 |
Msa0422410 | AT4G03950.1 | 28.438 | 320 | 153 | 12 | 104 | 420 | 11 | 257 | 2.63e-22 | 96.3 |
Msa0422410 | AT1G77610.1 | 27.988 | 343 | 191 | 15 | 97 | 422 | 2 | 305 | 5.95e-21 | 93.6 |
Msa0422410 | AT3G10290.1 | 24.765 | 319 | 213 | 5 | 107 | 418 | 54 | 352 | 7.79e-20 | 90.9 |
Msa0422410 | AT3G11320.1 | 25.890 | 309 | 207 | 7 | 118 | 422 | 18 | 308 | 9.79e-18 | 84.0 |
Msa0422410 | AT5G04160.1 | 26.140 | 329 | 206 | 8 | 102 | 418 | 3 | 306 | 1.29e-17 | 83.6 |
Msa0422410 | AT1G43310.1 | 74.468 | 47 | 12 | 0 | 223 | 269 | 41 | 87 | 1.42e-17 | 78.2 |
Msa0422410 | AT5G05820.1 | 25.902 | 305 | 205 | 6 | 118 | 418 | 18 | 305 | 1.73e-17 | 83.2 |
Msa0422410 | AT1G12500.1 | 26.877 | 253 | 155 | 6 | 173 | 422 | 131 | 356 | 3.23e-14 | 73.9 |
Msa0422410 | AT5G11230.1 | 24.012 | 329 | 222 | 9 | 96 | 417 | 2 | 309 | 8.95e-11 | 63.5 |
Find 146 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGGATCCTTGTTCGGTTTA+TGG | 0.127694 | 3_2:+71711609 | Msa0422410:CDS |
GCGGAGTCACCAGCGCTTTC+GGG | 0.195666 | 3_2:-71711551 | None:intergenic |
ATTCAGAATTTGCAGCTATT+TGG | 0.225406 | 3_2:-71715094 | None:intergenic |
GAAGGCTGTGGACTGCATTT+TGG | 0.267902 | 3_2:-71711273 | None:intergenic |
GGCGGAGTCACCAGCGCTTT+CGG | 0.269788 | 3_2:-71711552 | None:intergenic |
GTCTCTCCTGTGAATGCTTT+TGG | 0.293260 | 3_2:+71714860 | Msa0422410:CDS |
CTCGCTATTGTGCATACTTT+GGG | 0.297295 | 3_2:+71712151 | Msa0422410:CDS |
GTCGTTGTTGTTAGATGATT+TGG | 0.302177 | 3_2:-71711372 | None:intergenic |
CAAATTCTGAATTTATTTGT+AGG | 0.303251 | 3_2:+71715105 | Msa0422410:three_prime_UTR |
TGAACTACAGTCACGGTTAC+AGG | 0.306882 | 3_2:-71711833 | None:intergenic |
TTGCCGACGGAATGGGTAAC+AGG | 0.314706 | 3_2:-71714782 | None:intergenic |
TTGTAGGTGAGATAGGAATA+TGG | 0.317006 | 3_2:+71715121 | Msa0422410:three_prime_UTR |
TGGGGTTGGTGTGGAGAGGG+AGG | 0.317556 | 3_2:-71711310 | None:intergenic |
TGGTGTGGAGAGGGAGGGTA+GGG | 0.320081 | 3_2:-71711304 | None:intergenic |
CGGCGGAGAGACGGAGGTTA+AGG | 0.320918 | 3_2:-71711349 | None:intergenic |
AATTTATTTGTAGGTGAGAT+AGG | 0.325683 | 3_2:+71715114 | Msa0422410:three_prime_UTR |
ATCCTTTCTGCAATGTTCCT+TGG | 0.335342 | 3_2:+71712259 | Msa0422410:CDS |
ACGTAATGTTCTTAGCAAAA+AGG | 0.346379 | 3_2:+71713029 | Msa0422410:CDS |
CACCTTTCCAAGACTCATAT+TGG | 0.360488 | 3_2:-71712185 | None:intergenic |
ATTTGTAATAATTTATATAC+AGG | 0.369573 | 3_2:-71715453 | None:intergenic |
TCTCGTTTGTTAAAGTTGAT+AGG | 0.371226 | 3_2:+71713303 | Msa0422410:CDS |
CTTCAGCTTGGATCCTTGTT+CGG | 0.377633 | 3_2:+71711602 | Msa0422410:CDS |
CCCTCACCAAACATTGTTGC+TGG | 0.382642 | 3_2:+71711120 | Msa0422410:five_prime_UTR |
ACTCGCTATTGTGCATACTT+TGG | 0.384453 | 3_2:+71712150 | Msa0422410:CDS |
AAATCTCAATGTTGTTTAAG+TGG | 0.395765 | 3_2:-71711219 | None:intergenic |
TTGGTGTGGAGAGGGAGGGT+AGG | 0.399116 | 3_2:-71711305 | None:intergenic |
TTGTTTCTTTCAGGAATCAT+TGG | 0.401238 | 3_2:+71713163 | Msa0422410:intron |
TATGTCATCATAATCTGTTT+TGG | 0.401392 | 3_2:+71715341 | Msa0422410:three_prime_UTR |
CCGCCACCAGCAACAATGTT+TGG | 0.409290 | 3_2:-71711126 | None:intergenic |
CTGTTCTTGTAACCTTTATG+TGG | 0.412077 | 3_2:+71711870 | Msa0422410:CDS |
CTTCAATATTTACAACAAAC+AGG | 0.414806 | 3_2:+71711649 | Msa0422410:CDS |
AGGCCTACACCCTGGGTGAT+TGG | 0.426673 | 3_2:+71712777 | Msa0422410:CDS |
TGTAGGTGAGATAGGAATAT+GGG | 0.427352 | 3_2:+71715122 | Msa0422410:three_prime_UTR |
TTACTGAAGCCTCTTTCAAT+TGG | 0.432373 | 3_2:+71712841 | Msa0422410:CDS |
AGGGAGCGTCTGAAACGGTT+GGG | 0.432953 | 3_2:-71711329 | None:intergenic |
AGCGCTTTCGGGGACGGAAG+TGG | 0.442160 | 3_2:-71711540 | None:intergenic |
GGTTCACTCGTGCCTATTGT+TGG | 0.445657 | 3_2:+71712798 | Msa0422410:CDS |
ACAGCAGATTGCAGGTAAGC+AGG | 0.445859 | 3_2:-71713275 | None:intergenic |
AGATACTCACAGCAGATTGC+AGG | 0.447914 | 3_2:-71713283 | None:intergenic |
AGTGCAACTCCACCAACAAT+AGG | 0.455372 | 3_2:-71712810 | None:intergenic |
GAGTGCAGCAAGAAGAGATC+TGG | 0.457303 | 3_2:-71713428 | None:intergenic |
CTTCATTCACTCGTCAATCA+TGG | 0.462555 | 3_2:+71711435 | Msa0422410:CDS |
AAGTTATTCTGCTTGGTGAT+TGG | 0.464588 | 3_2:+71715376 | Msa0422410:three_prime_UTR |
GAATTTGAAAGAAGAGGAAG+AGG | 0.466601 | 3_2:-71711471 | None:intergenic |
CACACAATTGCCGACGGAAT+GGG | 0.466624 | 3_2:-71714789 | None:intergenic |
TTCTGCAATGTTCCTTGGAG+AGG | 0.467903 | 3_2:+71712264 | Msa0422410:CDS |
GGTGTGGAGAGGGAGGGTAG+GGG | 0.472217 | 3_2:-71711303 | None:intergenic |
TAGATTTAGAGCCCACATAA+AGG | 0.472384 | 3_2:-71711882 | None:intergenic |
GGCGGAGAGACGGAGGTTAA+GGG | 0.474532 | 3_2:-71711348 | None:intergenic |
TGGAGATCTGAAACGGAAGA+TGG | 0.475429 | 3_2:-71711253 | None:intergenic |
TGCTAAGAACATTACGTGAC+TGG | 0.485983 | 3_2:-71713023 | None:intergenic |
TGATAGGATTGTTGTATCAC+AGG | 0.486171 | 3_2:+71713319 | Msa0422410:CDS |
GTCACCAGCGCTTTCGGGGA+CGG | 0.490017 | 3_2:-71711546 | None:intergenic |
CAGATCTTACCAATTGAAAG+AGG | 0.491870 | 3_2:-71712850 | None:intergenic |
ACTGTAGTTCAATTTGCTGT+TGG | 0.493045 | 3_2:+71711845 | Msa0422410:CDS |
GAGGGTAGGGGAGAGAGTGA+AGG | 0.493247 | 3_2:-71711291 | None:intergenic |
TCACACAATTGCCGACGGAA+TGG | 0.493383 | 3_2:-71714790 | None:intergenic |
CCAAACATTGTTGCTGGTGG+CGG | 0.495853 | 3_2:+71711126 | Msa0422410:five_prime_UTR |
GGGGTTGGTGTGGAGAGGGA+GGG | 0.496153 | 3_2:-71711309 | None:intergenic |
TACTCACACAATTAAAGCTA+TGG | 0.496545 | 3_2:+71712219 | Msa0422410:CDS |
GCGTCTGAAACGGTTGGGGT+TGG | 0.501064 | 3_2:-71711324 | None:intergenic |
CAGCAGATTGCAGGTAAGCA+GGG | 0.503249 | 3_2:-71713274 | None:intergenic |
TGTTCTTGTAACCTTTATGT+GGG | 0.507076 | 3_2:+71711871 | Msa0422410:CDS |
TATTGTTGGTGGAGTTGCAC+TGG | 0.508448 | 3_2:+71712812 | Msa0422410:CDS |
GGTTGGGGTTGGTGTGGAGA+GGG | 0.509075 | 3_2:-71711313 | None:intergenic |
AGCTCCCGCAGCTATCTTCA+TGG | 0.509736 | 3_2:+71713235 | Msa0422410:CDS |
GATAATGTGTGGCATGGCAT+GGG | 0.510507 | 3_2:-71715163 | None:intergenic |
TCGGGGACGGAAGTGGCTTG+AGG | 0.514782 | 3_2:-71711533 | None:intergenic |
GCCTAAAATCACTGGTGCCA+TGG | 0.518278 | 3_2:+71711913 | Msa0422410:CDS |
GGTACCGCTATAGCTCTTGC+TGG | 0.520308 | 3_2:+71714977 | Msa0422410:intron |
CGGTTGGGGTTGGTGTGGAG+AGG | 0.521702 | 3_2:-71711314 | None:intergenic |
AGGTCTGAATTTGAAAGAAG+AGG | 0.522741 | 3_2:-71711477 | None:intergenic |
AAAGCATTCACAGGAGAGAC+AGG | 0.525906 | 3_2:-71714857 | None:intergenic |
GGATAATGTGTGGCATGGCA+TGG | 0.529645 | 3_2:-71715164 | None:intergenic |
GAAGTAGGAACAAGAGGAAG+AGG | 0.529831 | 3_2:-71711497 | None:intergenic |
ACAATGCAAGTTATTCTGCT+TGG | 0.529975 | 3_2:+71715369 | Msa0422410:three_prime_UTR |
CACCAATATGAGTCTTGGAA+AGG | 0.530315 | 3_2:+71712183 | Msa0422410:CDS |
GGCTTGAGGAGGAGAAAGAT+CGG | 0.533503 | 3_2:-71711519 | None:intergenic |
TACAAGAGGCCTAAAATCAC+TGG | 0.538197 | 3_2:+71711905 | Msa0422410:CDS |
TGCTGGTGGCGGACTACACG+AGG | 0.541795 | 3_2:+71711137 | Msa0422410:five_prime_UTR |
TTCTTACATGATATTGCAGA+GGG | 0.548286 | 3_2:+71714754 | Msa0422410:CDS |
TTGAAAGAAGAGGAAGAGGA+AGG | 0.548852 | 3_2:-71711467 | None:intergenic |
AGATCGGAAGTAGGAACAAG+AGG | 0.551121 | 3_2:-71711503 | None:intergenic |
GCATGGCATGGGGTCAAGAA+AGG | 0.552207 | 3_2:-71715152 | None:intergenic |
AGAGGAAGAGGAAGGAGACA+TGG | 0.552637 | 3_2:-71711459 | None:intergenic |
CCCTCCATGAAGATAGCTGC+GGG | 0.553556 | 3_2:-71713239 | None:intergenic |
GGAGGAGAAAGATCGGAAGT+AGG | 0.554082 | 3_2:-71711512 | None:intergenic |
GGGAGCGTCTGAAACGGTTG+GGG | 0.557883 | 3_2:-71711328 | None:intergenic |
ATGATTTGGCGGCGGAGAGA+CGG | 0.559649 | 3_2:-71711358 | None:intergenic |
TGCCGACGGAATGGGTAACA+GGG | 0.564452 | 3_2:-71714781 | None:intergenic |
ACTTCCGTCCCCGAAAGCGC+TGG | 0.564558 | 3_2:+71711542 | Msa0422410:CDS |
TCTTTACCAAAAGCATTCAC+AGG | 0.565255 | 3_2:-71714866 | None:intergenic |
TCACTCGTGCCTATTGTTGG+TGG | 0.566205 | 3_2:+71712801 | Msa0422410:CDS |
AAGGGAGCGTCTGAAACGGT+TGG | 0.567588 | 3_2:-71711330 | None:intergenic |
CTAACAGAGGCCTACACCCT+GGG | 0.568546 | 3_2:+71712770 | Msa0422410:intron |
AACTCACTTGCTGATACGCA+TGG | 0.568987 | 3_2:-71713456 | None:intergenic |
GGCTGGATTTGCGAGTGCAA+TGG | 0.570606 | 3_2:+71712984 | Msa0422410:CDS |
GAACCAATCACCCAGGGTGT+AGG | 0.571373 | 3_2:-71712780 | None:intergenic |
TCTAACAGAGGCCTACACCC+TGG | 0.571500 | 3_2:+71712769 | Msa0422410:intron |
CAATATGAGTCTTGGAAAGG+TGG | 0.571553 | 3_2:+71712186 | Msa0422410:CDS |
ACAATGTTTGGTGAGGGAGT+TGG | 0.573594 | 3_2:-71711114 | None:intergenic |
AAAGGTCATGGTTAAGCAAG+AGG | 0.575123 | 3_2:+71713047 | Msa0422410:CDS |
TCCCCTGTTACCCATTCCGT+CGG | 0.576931 | 3_2:+71714779 | Msa0422410:CDS |
GTTGTTGTTAGATGATTTGG+CGG | 0.577181 | 3_2:-71711369 | None:intergenic |
GAAAGGATGACAGAAAAGAA+AGG | 0.577210 | 3_2:-71712244 | None:intergenic |
AGGGGAGAGAGTGAAGGCTG+TGG | 0.579441 | 3_2:-71711285 | None:intergenic |
TATTGAAGTAGATGTTGAAG+AGG | 0.581047 | 3_2:-71711634 | None:intergenic |
TCGCTATTGTGCATACTTTG+GGG | 0.588012 | 3_2:+71712152 | Msa0422410:CDS |
GAACTACAGTCACGGTTACA+GGG | 0.591540 | 3_2:-71711832 | None:intergenic |
AACGACGGCGTAAATCTCAA+TGG | 0.595180 | 3_2:+71711389 | Msa0422410:CDS |
TGAAACGGTTGGGGTTGGTG+TGG | 0.596713 | 3_2:-71711319 | None:intergenic |
GGTTAAGGGAGCGTCTGAAA+CGG | 0.598374 | 3_2:-71711334 | None:intergenic |
GGGACGGAAGTGGCTTGAGG+AGG | 0.601394 | 3_2:-71711530 | None:intergenic |
CTCCAAGGAACATTGCAGAA+AGG | 0.601742 | 3_2:-71712261 | None:intergenic |
ACGTGACTGGTTTGTCACAT+TGG | 0.602709 | 3_2:-71713010 | None:intergenic |
ACCAGCAACAATGTTTGGTG+AGG | 0.604584 | 3_2:-71711121 | None:intergenic |
AGCAAATTGAACTACAGTCA+CGG | 0.606377 | 3_2:-71711840 | None:intergenic |
CCCGCAGCTATCTTCATGGA+GGG | 0.610657 | 3_2:+71713239 | Msa0422410:CDS |
TTTCTTACATGATATTGCAG+AGG | 0.611685 | 3_2:+71714753 | Msa0422410:CDS |
TCACCAAACATTGTTGCTGG+TGG | 0.614402 | 3_2:+71711123 | Msa0422410:five_prime_UTR |
GTTGTTAGATGATTTGGCGG+CGG | 0.614664 | 3_2:-71711366 | None:intergenic |
CGGAGTCACCAGCGCTTTCG+GGG | 0.619544 | 3_2:-71711550 | None:intergenic |
ATCAAAATCACACCTTCATG+TGG | 0.627621 | 3_2:-71715296 | None:intergenic |
AACGCCAGCAAGAGCTATAG+CGG | 0.629902 | 3_2:-71714981 | None:intergenic |
TTAGCACTCTAACCTCTCCA+AGG | 0.630079 | 3_2:-71712276 | None:intergenic |
TCCCGCAGCTATCTTCATGG+AGG | 0.630179 | 3_2:+71713238 | Msa0422410:CDS |
CAATTGTGTGAAGCGTGTTG+TGG | 0.634531 | 3_2:+71714802 | Msa0422410:CDS |
ATTTGGCGGCGGAGAGACGG+AGG | 0.634566 | 3_2:-71711355 | None:intergenic |
CCAGCAACAATGTTTGGTGA+GGG | 0.637781 | 3_2:-71711120 | None:intergenic |
AAAGTATGCACAATAGCGAG+TGG | 0.638254 | 3_2:-71712148 | None:intergenic |
GAGGTACCATAAACCGAACA+AGG | 0.639078 | 3_2:-71711615 | None:intergenic |
AGCAGATTGCAGGTAAGCAG+GGG | 0.639869 | 3_2:-71713273 | None:intergenic |
CACGAGTGAACCAATCACCC+AGG | 0.642426 | 3_2:-71712787 | None:intergenic |
GTAGGTGAGATAGGAATATG+GGG | 0.645517 | 3_2:+71715123 | Msa0422410:three_prime_UTR |
AAAATGGATAATGTGTGGCA+TGG | 0.646505 | 3_2:-71715169 | None:intergenic |
GGGCTCTAAATCTATACAAG+AGG | 0.650564 | 3_2:+71711891 | Msa0422410:CDS |
ACGCTTCACACAATTGCCGA+CGG | 0.667607 | 3_2:-71714795 | None:intergenic |
ACCCTCCATGAAGATAGCTG+CGG | 0.681078 | 3_2:-71713240 | None:intergenic |
ATAATGTGTGGCATGGCATG+GGG | 0.684494 | 3_2:-71715162 | None:intergenic |
ACGAGTGAACCAATCACCCA+GGG | 0.685336 | 3_2:-71712786 | None:intergenic |
GCCGACGGAATGGGTAACAG+GGG | 0.690384 | 3_2:-71714780 | None:intergenic |
CAACGAACTAGACTCGGCGG+CGG | 0.699628 | 3_2:-71711570 | None:intergenic |
AAATCATCTAACAACAACGA+CGG | 0.712539 | 3_2:+71711374 | Msa0422410:CDS |
GCTGGTGGCGGACTACACGA+GGG | 0.719767 | 3_2:+71711138 | Msa0422410:five_prime_UTR |
AGACATAATTGAAATCCACA+TGG | 0.736794 | 3_2:-71715210 | None:intergenic |
TAGCAACGAACTAGACTCGG+CGG | 0.750243 | 3_2:-71711573 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ACTATTTTTTAAGAAAAAAA+TGG | - | chr3_2:71715188-71715207 | None:intergenic | 10.0% |
!! | ATTTGTAATAATTTATATAC+AGG | - | chr3_2:71715456-71715475 | None:intergenic | 10.0% |
!! | TCTTATTCTCAAATTATTAT+GGG | - | chr3_2:71712033-71712052 | None:intergenic | 15.0% |
!! | TACAAAATATTAACAAATAG+CGG | - | chr3_2:71712599-71712618 | None:intergenic | 15.0% |
!!! | CTCTGATTATATTTTTTTAT+AGG | + | chr3_2:71714956-71714975 | Msa0422410:intron | 15.0% |
!!! | AGAGTATTTTATTTTCAATG+TGG | + | chr3_2:71711773-71711792 | Msa0422410:intron | 20.0% |
!!! | GTCTTATTCTCAAATTATTA+TGG | - | chr3_2:71712034-71712053 | None:intergenic | 20.0% |
!! | GAACAAGATTAAATTTAAAC+CGG | - | chr3_2:71712402-71712421 | None:intergenic | 20.0% |
!!! | ACTCTTTTGATATATTTCTA+TGG | + | chr3_2:71712513-71712532 | Msa0422410:intron | 20.0% |
!! | AATACATTTGATGTATTCTA+AGG | + | chr3_2:71712708-71712727 | Msa0422410:intron | 20.0% |
!!! | TGATTTGTAAAGAAAAGATT+CGG | + | chr3_2:71712917-71712936 | Msa0422410:intron | 20.0% |
!!! | ATTCCTTTAAAGAAAATAGA+GGG | - | chr3_2:71713521-71713540 | None:intergenic | 20.0% |
!! | TGTGTAATTGAAATTCTAAA+AGG | - | chr3_2:71713766-71713785 | None:intergenic | 20.0% |
!! | AATTGAGATGAAATAAATGA+GGG | - | chr3_2:71713812-71713831 | None:intergenic | 20.0% |
!! | TACTTAAGAAACACTTAAAT+TGG | + | chr3_2:71713933-71713952 | Msa0422410:intron | 20.0% |
!! | ACTTAAGAAACACTTAAATT+GGG | + | chr3_2:71713934-71713953 | Msa0422410:intron | 20.0% |
!!! | TTTAAATTTTAATGAACGTC+AGG | + | chr3_2:71714057-71714076 | Msa0422410:intron | 20.0% |
!!! | AGTAATATTTTTCTGTGAAT+GGG | + | chr3_2:71714722-71714741 | Msa0422410:intron | 20.0% |
!! | AAAAATATAATCAGAGTGAA+GGG | - | chr3_2:71714952-71714971 | None:intergenic | 20.0% |
!! | AAAAAATATAATCAGAGTGA+AGG | - | chr3_2:71714953-71714972 | None:intergenic | 20.0% |
!! | CAAATTCTGAATTTATTTGT+AGG | + | chr3_2:71715105-71715124 | Msa0422410:three_prime_UTR | 20.0% |
!!! | ATATGAGAAAAATTCTAAAG+AGG | - | chr3_2:71715275-71715294 | None:intergenic | 20.0% |
!! | AAATCTCAATGTTGTTTAAG+TGG | - | chr3_2:71711222-71711241 | None:intergenic | 25.0% |
! | CTTCAATATTTACAACAAAC+AGG | + | chr3_2:71711649-71711668 | Msa0422410:CDS | 25.0% |
! | TTGAGTTATACTATGAAACA+CGG | + | chr3_2:71711979-71711998 | Msa0422410:intron | 25.0% |
! | AACACATAACATCTAATTGA+AGG | - | chr3_2:71712083-71712102 | None:intergenic | 25.0% |
! | TTTATTCATATTCCGCTATA+TGG | + | chr3_2:71712573-71712592 | Msa0422410:intron | 25.0% |
!!! | TCTAGCTTTTGTATTGTAAT+TGG | + | chr3_2:71712678-71712697 | Msa0422410:intron | 25.0% |
! | TGAATTCTAATATGCTTTGA+TGG | + | chr3_2:71712949-71712968 | Msa0422410:intron | 25.0% |
!!! | CTTTGATGGATTATTGAATA+GGG | + | chr3_2:71712963-71712982 | Msa0422410:intron | 25.0% |
! | CATAAAATGTCTTCTTGAAT+GGG | - | chr3_2:71713103-71713122 | None:intergenic | 25.0% |
! | TCATAAAATGTCTTCTTGAA+TGG | - | chr3_2:71713104-71713123 | None:intergenic | 25.0% |
!!! | ACAATGATTTTGTTTCTTTC+AGG | + | chr3_2:71713154-71713173 | Msa0422410:intron | 25.0% |
! | TATACATTATCTTTCTTGAC+AGG | + | chr3_2:71713381-71713400 | Msa0422410:intron | 25.0% |
! | ATACATTATCTTTCTTGACA+GGG | + | chr3_2:71713382-71713401 | Msa0422410:intron | 25.0% |
!! | CATTCCTTTAAAGAAAATAG+AGG | - | chr3_2:71713522-71713541 | None:intergenic | 25.0% |
! | GCATGTTATAAAACATTTCA+CGG | - | chr3_2:71713686-71713705 | None:intergenic | 25.0% |
! | GAATTGAGATGAAATAAATG+AGG | - | chr3_2:71713813-71713832 | None:intergenic | 25.0% |
! | CTTAAGAAACACTTAAATTG+GGG | + | chr3_2:71713935-71713954 | Msa0422410:intron | 25.0% |
! | TACTTCATAAGATAATCTAC+AGG | - | chr3_2:71714549-71714568 | None:intergenic | 25.0% |
! | ATATTACTCTTTCATTGCAT+TGG | - | chr3_2:71714710-71714729 | None:intergenic | 25.0% |
!! | GAGTAATATTTTTCTGTGAA+TGG | + | chr3_2:71714721-71714740 | Msa0422410:intron | 25.0% |
!!! | TTTTAAAACTAAGCTGTCTT+TGG | - | chr3_2:71715043-71715062 | None:intergenic | 25.0% |
!!! | AAGACAGCTTAGTTTTAAAA+TGG | + | chr3_2:71715043-71715062 | Msa0422410:exon | 25.0% |
! | AATTTATTTGTAGGTGAGAT+AGG | + | chr3_2:71715114-71715133 | Msa0422410:three_prime_UTR | 25.0% |
! | AGAAAAAAATGGATAATGTG+TGG | - | chr3_2:71715177-71715196 | None:intergenic | 25.0% |
! | CTTAAAAAATAGTTACCATG+TGG | + | chr3_2:71715195-71715214 | Msa0422410:three_prime_UTR | 25.0% |
!! | TAAAGAGGACAACATTTTAA+CGG | - | chr3_2:71715260-71715279 | None:intergenic | 25.0% |
!! | TATGTCATCATAATCTGTTT+TGG | + | chr3_2:71715341-71715360 | Msa0422410:three_prime_UTR | 25.0% |
AAATCATCTAACAACAACGA+CGG | + | chr3_2:71711374-71711393 | Msa0422410:CDS | 30.0% | |
TATTGAAGTAGATGTTGAAG+AGG | - | chr3_2:71711637-71711656 | None:intergenic | 30.0% | |
GAGAAAATAGATCTCATGAA+AGG | - | chr3_2:71711690-71711709 | None:intergenic | 30.0% | |
! | TATGTTTTGTGTTTTCGCAA+CGG | + | chr3_2:71711747-71711766 | Msa0422410:intron | 30.0% |
TGTTCTTGTAACCTTTATGT+GGG | + | chr3_2:71711871-71711890 | Msa0422410:CDS | 30.0% | |
AAAGAGAGAAGAAAATACCA+TGG | - | chr3_2:71711933-71711952 | None:intergenic | 30.0% | |
TCAATGTTTGTGTAACTGTA+TGG | - | chr3_2:71712008-71712027 | None:intergenic | 30.0% | |
TACTCACACAATTAAAGCTA+TGG | + | chr3_2:71712219-71712238 | Msa0422410:CDS | 30.0% | |
AGACTAATTACAGTAACCAA+TGG | - | chr3_2:71712335-71712354 | None:intergenic | 30.0% | |
AGTATGCATCAAACTATTAC+CGG | + | chr3_2:71712380-71712399 | Msa0422410:intron | 30.0% | |
AAGATTGTAGTGTAACATCA+AGG | - | chr3_2:71712473-71712492 | None:intergenic | 30.0% | |
TTGATGTTACACTACAATCT+TGG | + | chr3_2:71712472-71712491 | Msa0422410:intron | 30.0% | |
TTGTTCAAATTCTGCTATGA+TGG | + | chr3_2:71712649-71712668 | Msa0422410:intron | 30.0% | |
TCTGTTAGAAATCGAAACAA+TGG | - | chr3_2:71712758-71712777 | None:intergenic | 30.0% | |
ATTGTTTCGATTTCTAACAG+AGG | + | chr3_2:71712757-71712776 | Msa0422410:intron | 30.0% | |
!! | GCTTTGATGGATTATTGAAT+AGG | + | chr3_2:71712962-71712981 | Msa0422410:intron | 30.0% |
ACGTAATGTTCTTAGCAAAA+AGG | + | chr3_2:71713029-71713048 | Msa0422410:CDS | 30.0% | |
! | TTGTTTCTTTCAGGAATCAT+TGG | + | chr3_2:71713163-71713182 | Msa0422410:intron | 30.0% |
! | TCTCGTTTGTTAAAGTTGAT+AGG | + | chr3_2:71713303-71713322 | Msa0422410:CDS | 30.0% |
TACATTATCTTTCTTGACAG+GGG | + | chr3_2:71713383-71713402 | Msa0422410:intron | 30.0% | |
!! | TTTTTCTGTTCTAGTCTTCT+AGG | + | chr3_2:71713484-71713503 | Msa0422410:intron | 30.0% |
! | TGTCCCTCTATTTTCTTTAA+AGG | + | chr3_2:71713515-71713534 | Msa0422410:intron | 30.0% |
GACAAAGAACTATAAGCAAA+AGG | - | chr3_2:71713588-71713607 | None:intergenic | 30.0% | |
TGCTTATAGTTCTTTGTCTT+TGG | + | chr3_2:71713590-71713609 | Msa0422410:intron | 30.0% | |
! | GAGTAATAGAGTACACTTTT+AGG | + | chr3_2:71713971-71713990 | Msa0422410:intron | 30.0% |
! | CTCGACTATAAATTTGCTTT+AGG | - | chr3_2:71714104-71714123 | None:intergenic | 30.0% |
TCAAAGTTTACGGTGAAAAA+AGG | - | chr3_2:71714298-71714317 | None:intergenic | 30.0% | |
!!! | TTTTTTCACCGTAAACTTTG+AGG | + | chr3_2:71714297-71714316 | Msa0422410:intron | 30.0% |
!! | GTTCAAAAGTATTCTAACGT+CGG | - | chr3_2:71714478-71714497 | None:intergenic | 30.0% |
TGCATTGAAAGATAAGGAAA+TGG | - | chr3_2:71714500-71714519 | None:intergenic | 30.0% | |
! | ATATGTCAGCATTTCTTTTC+AGG | - | chr3_2:71714613-71714632 | None:intergenic | 30.0% |
AAAGAAATGCTGACATATGA+AGG | + | chr3_2:71714615-71714634 | Msa0422410:intron | 30.0% | |
AAGAAATGCTGACATATGAA+GGG | + | chr3_2:71714616-71714635 | Msa0422410:intron | 30.0% | |
TTTCTTACATGATATTGCAG+AGG | + | chr3_2:71714753-71714772 | Msa0422410:CDS | 30.0% | |
TTCTTACATGATATTGCAGA+GGG | + | chr3_2:71714754-71714773 | Msa0422410:CDS | 30.0% | |
ATTCAGAATTTGCAGCTATT+TGG | - | chr3_2:71715097-71715116 | None:intergenic | 30.0% | |
AGACATAATTGAAATCCACA+TGG | - | chr3_2:71715213-71715232 | None:intergenic | 30.0% | |
! | TTTTCTCATATACCACATGA+AGG | + | chr3_2:71715284-71715303 | Msa0422410:three_prime_UTR | 30.0% |
!!! | GCGAGTGTTTTGAAGTTTAA+GGG | - | chr3_2:71711173-71711192 | None:intergenic | 35.0% |
!! | TGCATTTTGGAGATCTGAAA+CGG | - | chr3_2:71711263-71711282 | None:intergenic | 35.0% |
! | GTTGTTGTTAGATGATTTGG+CGG | - | chr3_2:71711372-71711391 | None:intergenic | 35.0% |
! | GTCGTTGTTGTTAGATGATT+TGG | - | chr3_2:71711375-71711394 | None:intergenic | 35.0% |
GAATGAAGAAGAAGAAGAAG+AGG | - | chr3_2:71711423-71711442 | None:intergenic | 35.0% | |
GAATTTGAAAGAAGAGGAAG+AGG | - | chr3_2:71711474-71711493 | None:intergenic | 35.0% | |
AGGTCTGAATTTGAAAGAAG+AGG | - | chr3_2:71711480-71711499 | None:intergenic | 35.0% | |
! | TTTTAGCAACGAACTAGACT+CGG | - | chr3_2:71711579-71711598 | None:intergenic | 35.0% |
TTGCTAAAAACTCTTCAGCT+TGG | + | chr3_2:71711590-71711609 | Msa0422410:CDS | 35.0% | |
! | ATGTGGATTTTCCTTTTTGC+AGG | + | chr3_2:71711790-71711809 | Msa0422410:intron | 35.0% |
!! | TTCCTTTTTGCAGGTTTTGA+AGG | + | chr3_2:71711799-71711818 | Msa0422410:intron | 35.0% |
AGCAAATTGAACTACAGTCA+CGG | - | chr3_2:71711843-71711862 | None:intergenic | 35.0% | |
!! | ACTGTAGTTCAATTTGCTGT+TGG | + | chr3_2:71711845-71711864 | Msa0422410:CDS | 35.0% |
CTGTTCTTGTAACCTTTATG+TGG | + | chr3_2:71711870-71711889 | Msa0422410:CDS | 35.0% | |
! | TAGATTTAGAGCCCACATAA+AGG | - | chr3_2:71711885-71711904 | None:intergenic | 35.0% |
! | CTTTTCACCAATATGAGTCT+TGG | + | chr3_2:71712178-71712197 | Msa0422410:CDS | 35.0% |
GAAAGGATGACAGAAAAGAA+AGG | - | chr3_2:71712247-71712266 | None:intergenic | 35.0% | |
! | TGTTGCAATCCATGATTTTG+CGG | + | chr3_2:71712424-71712443 | Msa0422410:intron | 35.0% |
! | CTGTGGATTGCATAAAACAA+TGG | + | chr3_2:71712550-71712569 | Msa0422410:intron | 35.0% |
TTACTGAAGCCTCTTTCAAT+TGG | + | chr3_2:71712841-71712860 | Msa0422410:CDS | 35.0% | |
CAGATCTTACCAATTGAAAG+AGG | - | chr3_2:71712853-71712872 | None:intergenic | 35.0% | |
TGTTCTTAGCAAAAAGGTCA+TGG | + | chr3_2:71713035-71713054 | Msa0422410:CDS | 35.0% | |
GCAAGAGGTAATATGATCTT+TGG | + | chr3_2:71713062-71713081 | Msa0422410:intron | 35.0% | |
TGATAGGATTGTTGTATCAC+AGG | + | chr3_2:71713319-71713338 | Msa0422410:CDS | 35.0% | |
GACACTTAAGATGAGAATGA+GGG | - | chr3_2:71713710-71713729 | None:intergenic | 35.0% | |
TGACACTTAAGATGAGAATG+AGG | - | chr3_2:71713711-71713730 | None:intergenic | 35.0% | |
!! | ATGAGGGCATTAGTAGAAAA+AGG | - | chr3_2:71713796-71713815 | None:intergenic | 35.0% |
AAGAAACACTTAAATTGGGG+TGG | + | chr3_2:71713938-71713957 | Msa0422410:intron | 35.0% | |
TTTAGGCCTCTAAACATGTT+GGG | - | chr3_2:71714087-71714106 | None:intergenic | 35.0% | |
GCTTAAGTGTAACATAGGAT+AGG | - | chr3_2:71714387-71714406 | None:intergenic | 35.0% | |
TCCTATGTTACACTTAAGCA+TGG | + | chr3_2:71714388-71714407 | Msa0422410:intron | 35.0% | |
ACCATGCTTAAGTGTAACAT+AGG | - | chr3_2:71714392-71714411 | None:intergenic | 35.0% | |
CAACAGTGCATTGAAAGATA+AGG | - | chr3_2:71714506-71714525 | None:intergenic | 35.0% | |
!!! | TCAGCATTTCTTTTCAGGTT+AGG | - | chr3_2:71714608-71714627 | None:intergenic | 35.0% |
GACATATGAAGGGAAAATAG+TGG | + | chr3_2:71714626-71714645 | Msa0422410:intron | 35.0% | |
!! | TCTTTACCAAAAGCATTCAC+AGG | - | chr3_2:71714869-71714888 | None:intergenic | 35.0% |
TGGTAAAGATTGCTTCTTTC+TGG | + | chr3_2:71714880-71714899 | Msa0422410:intron | 35.0% | |
TTGTAGGTGAGATAGGAATA+TGG | + | chr3_2:71715121-71715140 | Msa0422410:three_prime_UTR | 35.0% | |
TGTAGGTGAGATAGGAATAT+GGG | + | chr3_2:71715122-71715141 | Msa0422410:three_prime_UTR | 35.0% | |
AAAATGGATAATGTGTGGCA+TGG | - | chr3_2:71715172-71715191 | None:intergenic | 35.0% | |
ATCAAAATCACACCTTCATG+TGG | - | chr3_2:71715299-71715318 | None:intergenic | 35.0% | |
ACAATGCAAGTTATTCTGCT+TGG | + | chr3_2:71715369-71715388 | Msa0422410:three_prime_UTR | 35.0% | |
! | AAGTTATTCTGCTTGGTGAT+TGG | + | chr3_2:71715376-71715395 | Msa0422410:three_prime_UTR | 35.0% |
!!! | GGCGAGTGTTTTGAAGTTTA+AGG | - | chr3_2:71711174-71711193 | None:intergenic | 40.0% |
CTTCATTCACTCGTCAATCA+TGG | + | chr3_2:71711435-71711454 | Msa0422410:CDS | 40.0% | |
TTGAAAGAAGAGGAAGAGGA+AGG | - | chr3_2:71711470-71711489 | None:intergenic | 40.0% | |
TTGGATCCTTGTTCGGTTTA+TGG | + | chr3_2:71711609-71711628 | Msa0422410:CDS | 40.0% | |
TGCCTTCAAAACCTGCAAAA+AGG | - | chr3_2:71711804-71711823 | None:intergenic | 40.0% | |
!! | GGGCTCTAAATCTATACAAG+AGG | + | chr3_2:71711891-71711910 | Msa0422410:CDS | 40.0% |
TACAAGAGGCCTAAAATCAC+TGG | + | chr3_2:71711905-71711924 | Msa0422410:CDS | 40.0% | |
AAAGTATGCACAATAGCGAG+TGG | - | chr3_2:71712151-71712170 | None:intergenic | 40.0% | |
ACTCGCTATTGTGCATACTT+TGG | + | chr3_2:71712150-71712169 | Msa0422410:CDS | 40.0% | |
CTCGCTATTGTGCATACTTT+GGG | + | chr3_2:71712151-71712170 | Msa0422410:CDS | 40.0% | |
TCGCTATTGTGCATACTTTG+GGG | + | chr3_2:71712152-71712171 | Msa0422410:CDS | 40.0% | |
CACCAATATGAGTCTTGGAA+AGG | + | chr3_2:71712183-71712202 | Msa0422410:CDS | 40.0% | |
CACCTTTCCAAGACTCATAT+TGG | - | chr3_2:71712188-71712207 | None:intergenic | 40.0% | |
CAATATGAGTCTTGGAAAGG+TGG | + | chr3_2:71712186-71712205 | Msa0422410:CDS | 40.0% | |
ATCCTTTCTGCAATGTTCCT+TGG | + | chr3_2:71712259-71712278 | Msa0422410:CDS | 40.0% | |
! | TTTTTCCCGCAATATGCCAT+TGG | + | chr3_2:71712316-71712335 | Msa0422410:intron | 40.0% |
AGTAACCAATGGCATATTGC+GGG | - | chr3_2:71712324-71712343 | None:intergenic | 40.0% | |
CAGTAACCAATGGCATATTG+CGG | - | chr3_2:71712325-71712344 | None:intergenic | 40.0% | |
TGGTACAATGTTGTCAACTG+TGG | + | chr3_2:71712533-71712552 | Msa0422410:intron | 40.0% | |
AACAAATAGCGGCCATATAG+CGG | - | chr3_2:71712588-71712607 | None:intergenic | 40.0% | |
!! | GATGGATTATTGAATAGGGC+TGG | + | chr3_2:71712967-71712986 | Msa0422410:intron | 40.0% |
TGCTAAGAACATTACGTGAC+TGG | - | chr3_2:71713026-71713045 | None:intergenic | 40.0% | |
AAAGGTCATGGTTAAGCAAG+AGG | + | chr3_2:71713047-71713066 | Msa0422410:CDS | 40.0% | |
!! | TCTTCTTGAATGGGAGCATT+AGG | - | chr3_2:71713094-71713113 | None:intergenic | 40.0% |
TTATCTTTCTTGACAGGGGT+TGG | + | chr3_2:71713387-71713406 | Msa0422410:intron | 40.0% | |
TGAAGTTGCAAGAACCTGAT+AGG | + | chr3_2:71713545-71713564 | Msa0422410:intron | 40.0% | |
GAAGTTGCAAGAACCTGATA+GGG | + | chr3_2:71713546-71713565 | Msa0422410:intron | 40.0% | |
AAGTTGCAAGAACCTGATAG+GGG | + | chr3_2:71713547-71713566 | Msa0422410:intron | 40.0% | |
! | ATAACTGTCTGCTACTTGCT+GGG | + | chr3_2:71713652-71713671 | Msa0422410:intron | 40.0% |
! | TGCTTGCTAGACTAAACTCT+AGG | + | chr3_2:71714019-71714038 | Msa0422410:intron | 40.0% |
TTGCTAGACTAAACTCTAGG+TGG | + | chr3_2:71714022-71714041 | Msa0422410:intron | 40.0% | |
TTAGGCCTCTAAACATGTTG+GGG | - | chr3_2:71714086-71714105 | None:intergenic | 40.0% | |
CTTTAGGCCTCTAAACATGT+TGG | - | chr3_2:71714088-71714107 | None:intergenic | 40.0% | |
AGCCTCTTGACTAACTAAGT+TGG | + | chr3_2:71714210-71714229 | Msa0422410:intron | 40.0% | |
GCCTCTTGACTAACTAAGTT+GGG | + | chr3_2:71714211-71714230 | Msa0422410:intron | 40.0% | |
TCCCAACTTAGTTAGTCAAG+AGG | - | chr3_2:71714215-71714234 | None:intergenic | 40.0% | |
! | CAGGTGATTTTCTGTCAAGA+TGG | - | chr3_2:71714530-71714549 | None:intergenic | 40.0% |
! | TGGCGTTTTCTTCTACTCAA+GGG | + | chr3_2:71714997-71715016 | Msa0422410:CDS | 40.0% |
GTAGGTGAGATAGGAATATG+GGG | + | chr3_2:71715123-71715142 | Msa0422410:three_prime_UTR | 40.0% | |
! | ACAATGTTTGGTGAGGGAGT+TGG | - | chr3_2:71711117-71711136 | None:intergenic | 45.0% |
! | CCAGCAACAATGTTTGGTGA+GGG | - | chr3_2:71711123-71711142 | None:intergenic | 45.0% |
! | ACCAGCAACAATGTTTGGTG+AGG | - | chr3_2:71711124-71711143 | None:intergenic | 45.0% |
TCACCAAACATTGTTGCTGG+TGG | + | chr3_2:71711123-71711142 | Msa0422410:five_prime_UTR | 45.0% | |
! | TGGAGATCTGAAACGGAAGA+TGG | - | chr3_2:71711256-71711275 | None:intergenic | 45.0% |
! | GTTGTTAGATGATTTGGCGG+CGG | - | chr3_2:71711369-71711388 | None:intergenic | 45.0% |
AACGACGGCGTAAATCTCAA+TGG | + | chr3_2:71711389-71711408 | Msa0422410:CDS | 45.0% | |
GAAGTAGGAACAAGAGGAAG+AGG | - | chr3_2:71711500-71711519 | None:intergenic | 45.0% | |
AGATCGGAAGTAGGAACAAG+AGG | - | chr3_2:71711506-71711525 | None:intergenic | 45.0% | |
CTTCAGCTTGGATCCTTGTT+CGG | + | chr3_2:71711602-71711621 | Msa0422410:CDS | 45.0% | |
! | GAGGTACCATAAACCGAACA+AGG | - | chr3_2:71711618-71711637 | None:intergenic | 45.0% |
GAACTACAGTCACGGTTACA+GGG | - | chr3_2:71711835-71711854 | None:intergenic | 45.0% | |
TGAACTACAGTCACGGTTAC+AGG | - | chr3_2:71711836-71711855 | None:intergenic | 45.0% | |
! | ACCATGGCACCAGTGATTTT+AGG | - | chr3_2:71711917-71711936 | None:intergenic | 45.0% |
CTCCAAGGAACATTGCAGAA+AGG | - | chr3_2:71712264-71712283 | None:intergenic | 45.0% | |
TTCTGCAATGTTCCTTGGAG+AGG | + | chr3_2:71712264-71712283 | Msa0422410:CDS | 45.0% | |
TTAGCACTCTAACCTCTCCA+AGG | - | chr3_2:71712279-71712298 | None:intergenic | 45.0% | |
AGTTCGCAACCGCAAAATCA+TGG | - | chr3_2:71712436-71712455 | None:intergenic | 45.0% | |
! | ATTTTGCGGTTGCGAACTCA+AGG | + | chr3_2:71712438-71712457 | Msa0422410:intron | 45.0% |
AGTGCAACTCCACCAACAAT+AGG | - | chr3_2:71712813-71712832 | None:intergenic | 45.0% | |
! | TATTGTTGGTGGAGTTGCAC+TGG | + | chr3_2:71712812-71712831 | Msa0422410:CDS | 45.0% |
ATGTGTCCTGTTCCTTCTAG+AGG | + | chr3_2:71712873-71712892 | Msa0422410:intron | 45.0% | |
!! | CTTCTAGAGGTAGTGGAGAA+GGG | + | chr3_2:71712886-71712905 | Msa0422410:intron | 45.0% |
!! | ACGTGACTGGTTTGTCACAT+TGG | - | chr3_2:71713013-71713032 | None:intergenic | 45.0% |
AGATACTCACAGCAGATTGC+AGG | - | chr3_2:71713286-71713305 | None:intergenic | 45.0% | |
! | AACTCACTTGCTGATACGCA+TGG | - | chr3_2:71713459-71713478 | None:intergenic | 45.0% |
! | CATAACTGTCTGCTACTTGC+TGG | + | chr3_2:71713651-71713670 | Msa0422410:intron | 45.0% |
TGTACTCTATTACTCCCTCC+AGG | - | chr3_2:71713966-71713985 | None:intergenic | 45.0% | |
! | TTGCTGCTCAATGCATTGAC+TGG | + | chr3_2:71713996-71714015 | Msa0422410:intron | 45.0% |
ATCAAATTCTGCCGAGTCCA+AGG | + | chr3_2:71714169-71714188 | Msa0422410:intron | 45.0% | |
ACATCTCCCTGTTCAAACCT+TGG | - | chr3_2:71714189-71714208 | None:intergenic | 45.0% | |
GACTAGGGCCTCAAAGTTTA+CGG | - | chr3_2:71714308-71714327 | None:intergenic | 45.0% | |
!! | TAAACTTTGAGGCCCTAGTC+TGG | + | chr3_2:71714308-71714327 | Msa0422410:intron | 45.0% |
!! | AAACTTTGAGGCCCTAGTCT+GGG | + | chr3_2:71714309-71714328 | Msa0422410:intron | 45.0% |
!! | TTTTCTGTGAATGGGCTTGC+AGG | + | chr3_2:71714730-71714749 | Msa0422410:intron | 45.0% |
CAATTGTGTGAAGCGTGTTG+TGG | + | chr3_2:71714802-71714821 | Msa0422410:CDS | 45.0% | |
! | AAAGCATTCACAGGAGAGAC+AGG | - | chr3_2:71714860-71714879 | None:intergenic | 45.0% |
! | GTCTCTCCTGTGAATGCTTT+TGG | + | chr3_2:71714860-71714879 | Msa0422410:CDS | 45.0% |
! | CTGGCGTTTTCTTCTACTCA+AGG | + | chr3_2:71714996-71715015 | Msa0422410:CDS | 45.0% |
ATAATGTGTGGCATGGCATG+GGG | - | chr3_2:71715165-71715184 | None:intergenic | 45.0% | |
GATAATGTGTGGCATGGCAT+GGG | - | chr3_2:71715166-71715185 | None:intergenic | 45.0% | |
!!! | TGTTTTTATTTATTTTAAAA+AGG | - | chr3_2:71714127-71714146 | None:intergenic | 5.0% |
CCCTCACCAAACATTGTTGC+TGG | + | chr3_2:71711120-71711139 | Msa0422410:five_prime_UTR | 50.0% | |
CCAAACATTGTTGCTGGTGG+CGG | + | chr3_2:71711126-71711145 | Msa0422410:five_prime_UTR | 50.0% | |
TGAGTCTCTCTCTCTCTCTG+GGG | - | chr3_2:71711195-71711214 | None:intergenic | 50.0% | |
GTGAGTCTCTCTCTCTCTCT+GGG | - | chr3_2:71711196-71711215 | None:intergenic | 50.0% | |
AGTGAGTCTCTCTCTCTCTC+TGG | - | chr3_2:71711197-71711216 | None:intergenic | 50.0% | |
!! | GAAGGCTGTGGACTGCATTT+TGG | - | chr3_2:71711276-71711295 | None:intergenic | 50.0% |
!! | GGTTAAGGGAGCGTCTGAAA+CGG | - | chr3_2:71711337-71711356 | None:intergenic | 50.0% |
AGAGGAAGAGGAAGGAGACA+TGG | - | chr3_2:71711462-71711481 | None:intergenic | 50.0% | |
GGAGGAGAAAGATCGGAAGT+AGG | - | chr3_2:71711515-71711534 | None:intergenic | 50.0% | |
GGCTTGAGGAGGAGAAAGAT+CGG | - | chr3_2:71711522-71711541 | None:intergenic | 50.0% | |
TAGCAACGAACTAGACTCGG+CGG | - | chr3_2:71711576-71711595 | None:intergenic | 50.0% | |
! | GCCTAAAATCACTGGTGCCA+TGG | + | chr3_2:71711913-71711932 | Msa0422410:CDS | 50.0% |
ACGAGTGAACCAATCACCCA+GGG | - | chr3_2:71712789-71712808 | None:intergenic | 50.0% | |
GGTTCACTCGTGCCTATTGT+TGG | + | chr3_2:71712798-71712817 | Msa0422410:CDS | 50.0% | |
TCACTCGTGCCTATTGTTGG+TGG | + | chr3_2:71712801-71712820 | Msa0422410:CDS | 50.0% | |
! | CCACTACCTCTAGAAGGAAC+AGG | - | chr3_2:71712882-71712901 | None:intergenic | 50.0% |
! | CCTGTTCCTTCTAGAGGTAG+TGG | + | chr3_2:71712879-71712898 | Msa0422410:intron | 50.0% |
CCTTCTCCACTACCTCTAGA+AGG | - | chr3_2:71712888-71712907 | None:intergenic | 50.0% | |
!! | CCTTCTAGAGGTAGTGGAGA+AGG | + | chr3_2:71712885-71712904 | Msa0422410:intron | 50.0% |
!! | GAGGTAGTGGAGAAGGGATA+TGG | + | chr3_2:71712892-71712911 | Msa0422410:intron | 50.0% |
ACCCTCCATGAAGATAGCTG+CGG | - | chr3_2:71713243-71713262 | None:intergenic | 50.0% | |
AGCAGATTGCAGGTAAGCAG+GGG | - | chr3_2:71713276-71713295 | None:intergenic | 50.0% | |
CAGCAGATTGCAGGTAAGCA+GGG | - | chr3_2:71713277-71713296 | None:intergenic | 50.0% | |
ACAGCAGATTGCAGGTAAGC+AGG | - | chr3_2:71713278-71713297 | None:intergenic | 50.0% | |
GAGTGCAGCAAGAAGAGATC+TGG | - | chr3_2:71713431-71713450 | None:intergenic | 50.0% | |
TTGCAAGAACCTGATAGGGG+AGG | + | chr3_2:71713550-71713569 | Msa0422410:intron | 50.0% | |
!! | GTTGATTAGCCTCCCCTATC+AGG | - | chr3_2:71713562-71713581 | None:intergenic | 50.0% |
ACTTAAATTGGGGTGGAGCC+TGG | + | chr3_2:71713945-71713964 | Msa0422410:intron | 50.0% | |
CCCTGTTCAAACCTTGGACT+CGG | - | chr3_2:71714183-71714202 | None:intergenic | 50.0% | |
CCGAGTCCAAGGTTTGAACA+GGG | + | chr3_2:71714180-71714199 | Msa0422410:intron | 50.0% | |
! | TACTTGGCTCTTCGGCTCTT+CGG | + | chr3_2:71714333-71714352 | Msa0422410:intron | 50.0% |
! | GCTGCATGTTTCTGACAGTG+TGG | + | chr3_2:71714418-71714437 | Msa0422410:intron | 50.0% |
CACACAATTGCCGACGGAAT+GGG | - | chr3_2:71714792-71714811 | None:intergenic | 50.0% | |
TCACACAATTGCCGACGGAA+TGG | - | chr3_2:71714793-71714812 | None:intergenic | 50.0% | |
ACGCTTCACACAATTGCCGA+CGG | - | chr3_2:71714798-71714817 | None:intergenic | 50.0% | |
AACGCCAGCAAGAGCTATAG+CGG | - | chr3_2:71714984-71715003 | None:intergenic | 50.0% | |
GGATAATGTGTGGCATGGCA+TGG | - | chr3_2:71715167-71715186 | None:intergenic | 50.0% | |
CCGCCACCAGCAACAATGTT+TGG | - | chr3_2:71711129-71711148 | None:intergenic | 55.0% | |
!! | TGAAACGGTTGGGGTTGGTG+TGG | - | chr3_2:71711322-71711341 | None:intergenic | 55.0% |
!! | AGGGAGCGTCTGAAACGGTT+GGG | - | chr3_2:71711332-71711351 | None:intergenic | 55.0% |
!! | AAGGGAGCGTCTGAAACGGT+TGG | - | chr3_2:71711333-71711352 | None:intergenic | 55.0% |
! | ATGATTTGGCGGCGGAGAGA+CGG | - | chr3_2:71711361-71711380 | None:intergenic | 55.0% |
TCTAACAGAGGCCTACACCC+TGG | + | chr3_2:71712769-71712788 | Msa0422410:intron | 55.0% | |
CTAACAGAGGCCTACACCCT+GGG | + | chr3_2:71712770-71712789 | Msa0422410:intron | 55.0% | |
GAACCAATCACCCAGGGTGT+AGG | - | chr3_2:71712783-71712802 | None:intergenic | 55.0% | |
CACGAGTGAACCAATCACCC+AGG | - | chr3_2:71712790-71712809 | None:intergenic | 55.0% | |
GGCTGGATTTGCGAGTGCAA+TGG | + | chr3_2:71712984-71713003 | Msa0422410:CDS | 55.0% | |
AGCTCCCGCAGCTATCTTCA+TGG | + | chr3_2:71713235-71713254 | Msa0422410:CDS | 55.0% | |
TCCCGCAGCTATCTTCATGG+AGG | + | chr3_2:71713238-71713257 | Msa0422410:CDS | 55.0% | |
CCCTCCATGAAGATAGCTGC+GGG | - | chr3_2:71713242-71713261 | None:intergenic | 55.0% | |
CCCGCAGCTATCTTCATGGA+GGG | + | chr3_2:71713239-71713258 | Msa0422410:CDS | 55.0% | |
TAAATTGGGGTGGAGCCTGG+AGG | + | chr3_2:71713948-71713967 | Msa0422410:intron | 55.0% | |
AAATTGGGGTGGAGCCTGGA+GGG | + | chr3_2:71713949-71713968 | Msa0422410:intron | 55.0% | |
GGTCGCCCCAACATGTTTAG+AGG | + | chr3_2:71714078-71714097 | Msa0422410:intron | 55.0% | |
GCCGAGTCCAAGGTTTGAAC+AGG | + | chr3_2:71714179-71714198 | Msa0422410:intron | 55.0% | |
GAGCCAAGTAGCCCAGACTA+GGG | - | chr3_2:71714323-71714342 | None:intergenic | 55.0% | |
AGAGCCAAGTAGCCCAGACT+AGG | - | chr3_2:71714324-71714343 | None:intergenic | 55.0% | |
! | GTCTGGGCTACTTGGCTCTT+CGG | + | chr3_2:71714325-71714344 | Msa0422410:intron | 55.0% |
TCCCCTGTTACCCATTCCGT+CGG | + | chr3_2:71714779-71714798 | Msa0422410:CDS | 55.0% | |
TGCCGACGGAATGGGTAACA+GGG | - | chr3_2:71714784-71714803 | None:intergenic | 55.0% | |
TTGCCGACGGAATGGGTAAC+AGG | - | chr3_2:71714785-71714804 | None:intergenic | 55.0% | |
GGTACCGCTATAGCTCTTGC+TGG | + | chr3_2:71714977-71714996 | Msa0422410:intron | 55.0% | |
GCATGGCATGGGGTCAAGAA+AGG | - | chr3_2:71715155-71715174 | None:intergenic | 55.0% | |
AGGGGAGAGAGTGAAGGCTG+TGG | - | chr3_2:71711288-71711307 | None:intergenic | 60.0% | |
GAGGGTAGGGGAGAGAGTGA+AGG | - | chr3_2:71711294-71711313 | None:intergenic | 60.0% | |
TGGTGTGGAGAGGGAGGGTA+GGG | - | chr3_2:71711307-71711326 | None:intergenic | 60.0% | |
TTGGTGTGGAGAGGGAGGGT+AGG | - | chr3_2:71711308-71711327 | None:intergenic | 60.0% | |
!! | GGTTGGGGTTGGTGTGGAGA+GGG | - | chr3_2:71711316-71711335 | None:intergenic | 60.0% |
! | GCGTCTGAAACGGTTGGGGT+TGG | - | chr3_2:71711327-71711346 | None:intergenic | 60.0% |
!! | GGGAGCGTCTGAAACGGTTG+GGG | - | chr3_2:71711331-71711350 | None:intergenic | 60.0% |
GGCGGAGAGACGGAGGTTAA+GGG | - | chr3_2:71711351-71711370 | None:intergenic | 60.0% | |
CAACGAACTAGACTCGGCGG+CGG | - | chr3_2:71711573-71711592 | None:intergenic | 60.0% | |
AGGCCTACACCCTGGGTGAT+TGG | + | chr3_2:71712777-71712796 | Msa0422410:CDS | 60.0% | |
AGGCCCTAGTCTGGGCTACT+TGG | + | chr3_2:71714317-71714336 | Msa0422410:intron | 60.0% | |
GCCGACGGAATGGGTAACAG+GGG | - | chr3_2:71714783-71714802 | None:intergenic | 60.0% | |
!! | TGCTGGTGGCGGACTACACG+AGG | + | chr3_2:71711137-71711156 | Msa0422410:five_prime_UTR | 65.0% |
!! | GCTGGTGGCGGACTACACGA+GGG | + | chr3_2:71711138-71711157 | Msa0422410:five_prime_UTR | 65.0% |
GGTGTGGAGAGGGAGGGTAG+GGG | - | chr3_2:71711306-71711325 | None:intergenic | 65.0% | |
!! | GGGGTTGGTGTGGAGAGGGA+GGG | - | chr3_2:71711312-71711331 | None:intergenic | 65.0% |
!! | TGGGGTTGGTGTGGAGAGGG+AGG | - | chr3_2:71711313-71711332 | None:intergenic | 65.0% |
!! | CGGTTGGGGTTGGTGTGGAG+AGG | - | chr3_2:71711317-71711336 | None:intergenic | 65.0% |
CGGCGGAGAGACGGAGGTTA+AGG | - | chr3_2:71711352-71711371 | None:intergenic | 65.0% | |
ATTTGGCGGCGGAGAGACGG+AGG | - | chr3_2:71711358-71711377 | None:intergenic | 65.0% | |
GGGACGGAAGTGGCTTGAGG+AGG | - | chr3_2:71711533-71711552 | None:intergenic | 65.0% | |
TCGGGGACGGAAGTGGCTTG+AGG | - | chr3_2:71711536-71711555 | None:intergenic | 65.0% | |
AGCGCTTTCGGGGACGGAAG+TGG | - | chr3_2:71711543-71711562 | None:intergenic | 65.0% | |
! | ACTTCCGTCCCCGAAAGCGC+TGG | + | chr3_2:71711542-71711561 | Msa0422410:CDS | 65.0% |
GTCACCAGCGCTTTCGGGGA+CGG | - | chr3_2:71711549-71711568 | None:intergenic | 65.0% | |
CGGAGTCACCAGCGCTTTCG+GGG | - | chr3_2:71711553-71711572 | None:intergenic | 65.0% | |
GCGGAGTCACCAGCGCTTTC+GGG | - | chr3_2:71711554-71711573 | None:intergenic | 65.0% | |
GGCGGAGTCACCAGCGCTTT+CGG | - | chr3_2:71711555-71711574 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 71711088 | 71715488 | 71711088 | ID=Msa0422410;Name=Msa0422410 |
chr3_2 | mRNA | 71711088 | 71715488 | 71711088 | ID=Msa0422410-mRNA-1;Parent=Msa0422410;Name=Msa0422410-mRNA-1;_AED=0.08;_eAED=0.08;_QI=190|0.87|0.88|1|1|1|9|434|426 |
chr3_2 | exon | 71711088 | 71711670 | 71711088 | ID=Msa0422410-mRNA-1:exon:17535;Parent=Msa0422410-mRNA-1 |
chr3_2 | exon | 71711812 | 71711934 | 71711812 | ID=Msa0422410-mRNA-1:exon:17536;Parent=Msa0422410-mRNA-1 |
chr3_2 | exon | 71712133 | 71712285 | 71712133 | ID=Msa0422410-mRNA-1:exon:17537;Parent=Msa0422410-mRNA-1 |
chr3_2 | exon | 71712777 | 71712862 | 71712777 | ID=Msa0422410-mRNA-1:exon:17538;Parent=Msa0422410-mRNA-1 |
chr3_2 | exon | 71712984 | 71713068 | 71712984 | ID=Msa0422410-mRNA-1:exon:17539;Parent=Msa0422410-mRNA-1 |
chr3_2 | exon | 71713176 | 71713340 | 71713176 | ID=Msa0422410-mRNA-1:exon:17540;Parent=Msa0422410-mRNA-1 |
chr3_2 | exon | 71713403 | 71713471 | 71713403 | ID=Msa0422410-mRNA-1:exon:17541;Parent=Msa0422410-mRNA-1 |
chr3_2 | exon | 71714752 | 71714881 | 71714752 | ID=Msa0422410-mRNA-1:exon:17542;Parent=Msa0422410-mRNA-1 |
chr3_2 | exon | 71714978 | 71715488 | 71714978 | ID=Msa0422410-mRNA-1:exon:17543;Parent=Msa0422410-mRNA-1 |
chr3_2 | five_prime_UTR | 71711088 | 71711277 | 71711088 | ID=Msa0422410-mRNA-1:five_prime_utr;Parent=Msa0422410-mRNA-1 |
chr3_2 | CDS | 71711278 | 71711670 | 71711278 | ID=Msa0422410-mRNA-1:cds;Parent=Msa0422410-mRNA-1 |
chr3_2 | CDS | 71711812 | 71711934 | 71711812 | ID=Msa0422410-mRNA-1:cds;Parent=Msa0422410-mRNA-1 |
chr3_2 | CDS | 71712133 | 71712285 | 71712133 | ID=Msa0422410-mRNA-1:cds;Parent=Msa0422410-mRNA-1 |
chr3_2 | CDS | 71712777 | 71712862 | 71712777 | ID=Msa0422410-mRNA-1:cds;Parent=Msa0422410-mRNA-1 |
chr3_2 | CDS | 71712984 | 71713068 | 71712984 | ID=Msa0422410-mRNA-1:cds;Parent=Msa0422410-mRNA-1 |
chr3_2 | CDS | 71713176 | 71713340 | 71713176 | ID=Msa0422410-mRNA-1:cds;Parent=Msa0422410-mRNA-1 |
chr3_2 | CDS | 71713403 | 71713471 | 71713403 | ID=Msa0422410-mRNA-1:cds;Parent=Msa0422410-mRNA-1 |
chr3_2 | CDS | 71714752 | 71714881 | 71714752 | ID=Msa0422410-mRNA-1:cds;Parent=Msa0422410-mRNA-1 |
chr3_2 | CDS | 71714978 | 71715054 | 71714978 | ID=Msa0422410-mRNA-1:cds;Parent=Msa0422410-mRNA-1 |
chr3_2 | three_prime_UTR | 71715055 | 71715488 | 71715055 | ID=Msa0422410-mRNA-1:three_prime_utr;Parent=Msa0422410-mRNA-1 |
Gene Sequence |
Protein sequence |