AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0610590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0610590 MtrunA17_Chr4g0043591 94.863 292 13 1 1 292 1 290 0.0 548
Msa0610590 MtrunA17_Chr1g0189751 30.319 188 110 2 124 292 80 265 4.56e-27 107
Msa0610590 MtrunA17_Chr1g0189671 30.457 197 107 6 124 293 80 273 6.11e-27 106
Msa0610590 MtrunA17_Chr1g0189721 28.365 208 125 4 104 292 63 265 3.61e-26 103
Msa0610590 MtrunA17_Chr1g0189591 25.623 281 155 5 64 292 28 306 2.00e-24 100
Msa0610590 MtrunA17_Chr1g0189821 28.877 187 114 2 124 293 83 267 2.39e-23 96.7
Msa0610590 MtrunA17_Chr7g0272101 29.237 236 146 6 72 292 28 257 3.78e-23 95.9
Msa0610590 MtrunA17_Chr1g0189611 30.159 189 106 7 124 292 83 265 1.65e-21 91.3
Msa0610590 MtrunA17_Chr1g0189621 25.000 256 164 6 57 292 17 264 4.05e-21 90.5
Msa0610590 MtrunA17_Chr4g0010881 28.571 203 132 4 93 292 45 237 4.18e-21 89.7
Msa0610590 MtrunA17_Chr7g0272091 29.572 257 138 10 74 292 32 283 1.56e-20 89.0
Msa0610590 MtrunA17_Chr1g0189571 28.365 208 100 6 130 292 2 205 1.44e-19 84.7
Msa0610590 MtrunA17_Chr1g0189541 28.718 195 110 8 116 292 1 184 1.82e-18 81.3
Msa0610590 MtrunA17_Chr1g0190071 26.577 222 125 6 104 293 67 282 1.97e-18 83.2
Msa0610590 MtrunA17_Chr1g0192371 26.923 260 144 8 71 292 30 281 5.89e-18 82.0
Msa0610590 MtrunA17_Chr1g0203331 25.641 234 141 4 73 275 13 244 6.12e-18 81.3
Msa0610590 MtrunA17_Chr1g0189781 24.082 245 158 5 73 292 32 273 3.89e-17 79.3
Msa0610590 MtrunA17_Chr1g0203281 25.301 249 153 7 73 292 28 272 8.28e-17 78.6
Msa0610590 MtrunA17_Chr1g0189641 26.531 196 115 3 124 292 80 273 8.73e-17 78.6
Msa0610590 MtrunA17_Chr7g0260801 28.191 188 111 5 124 293 94 275 6.80e-14 70.5
Msa0610590 MtrunA17_Chr7g0265551 25.726 241 143 9 82 293 124 357 2.90e-13 69.3
Msa0610590 MtrunA17_Chr1g0157451 27.835 194 102 8 135 293 94 284 2.54e-12 66.2
Msa0610590 MtrunA17_Chr8g0350401 26.222 225 138 8 87 289 60 278 3.02e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0610590 AT4G19840.1 52.451 204 90 5 94 293 46 246 6.00e-70 217
Msa0610590 AT4G19850.3 47.143 210 96 7 94 292 13 218 7.75e-57 182
Msa0610590 AT4G19850.1 49.383 162 77 3 136 292 15 176 2.25e-50 164
Msa0610590 AT4G19850.2 46.774 186 84 7 94 268 13 194 1.01e-45 154
Msa0610590 AT1G33920.1 44.079 152 81 3 145 292 13 164 1.65e-42 144
Msa0610590 AT1G65390.1 40.361 166 93 4 132 292 246 410 1.60e-37 137
Msa0610590 AT2G02240.1 28.472 288 173 8 28 291 38 316 6.26e-27 107
Msa0610590 AT5G45090.1 34.568 162 100 4 136 291 169 330 3.49e-25 103
Msa0610590 AT5G45090.2 32.948 173 110 4 125 291 136 308 4.27e-25 102
Msa0610590 AT2G02360.1 31.707 246 139 9 66 291 32 268 6.18e-24 98.6
Msa0610590 AT2G02250.1 27.719 285 172 12 31 291 29 303 1.26e-22 95.9
Msa0610590 AT5G45080.1 33.333 153 96 3 145 291 238 390 7.16e-22 94.7
Msa0610590 AT1G80110.1 31.527 203 120 4 106 291 55 255 9.40e-22 92.4
Msa0610590 AT2G26820.1 31.818 154 98 3 145 291 308 461 1.19e-20 92.0
Msa0610590 AT2G26820.3 31.818 154 98 3 145 291 324 477 1.24e-20 92.0
Msa0610590 AT2G02340.1 26.296 270 150 10 53 291 50 301 2.16e-19 86.7
Msa0610590 AT5G45070.1 33.133 166 103 6 135 293 190 354 1.40e-18 85.1
Msa0610590 AT2G02230.1 32.484 157 90 4 54 209 47 188 1.92e-17 81.6
Msa0610590 AT5G24560.1 24.380 242 117 8 53 293 17 193 5.60e-16 75.1
Msa0610590 AT1G09155.1 24.904 261 155 7 71 292 22 280 6.53e-15 73.9
Msa0610590 AT2G02320.1 26.877 253 154 10 62 291 54 298 6.55e-15 73.9
Msa0610590 AT2G02310.1 26.877 253 155 7 64 293 60 305 4.46e-13 68.9
Msa0610590 AT1G56250.1 25.941 239 136 7 93 292 45 281 1.83e-12 66.6
Msa0610590 AT3G53000.1 27.119 236 141 9 82 291 54 284 2.67e-12 66.6

Find 76 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTATTTATTTATTATAAA+TGG 0.169759 4_2:-58418891 None:intergenic
TGTATCCATTTCCAATAATT+TGG 0.178400 4_2:-58418057 None:intergenic
TGATCGTAATTCTTCCTTAT+TGG 0.201571 4_2:-58417504 None:intergenic
AACGTTGTTTGTAGAAATAT+TGG 0.268294 4_2:+58417962 Msa0610590:intron
AGAATAATAATAATAGAAAA+TGG 0.302031 4_2:-58419076 None:intergenic
GGGCAGAAGATCCAAATTAT+TGG 0.313201 4_2:+58418046 Msa0610590:CDS
GCAACACAAGGAAAATTTAA+TGG 0.313866 4_2:+58418667 Msa0610590:CDS
AATGTTCGACTTGTCCTTCC+AGG 0.347328 4_2:+58418632 Msa0610590:CDS
AAGATCCAAATTATTGGAAA+TGG 0.355234 4_2:+58418052 Msa0610590:CDS
ACAAAATGAACCAACCAATA+AGG 0.364806 4_2:+58417490 Msa0610590:CDS
TCCCTTGAAGATTTATCAAC+CGG 0.377577 4_2:-58417710 None:intergenic
GTGTGTTGGTTAGAAGTTCA+TGG 0.382382 4_2:+58418512 Msa0610590:CDS
GAAACTTGATATAAAATTCC+TGG 0.384782 4_2:-58418560 None:intergenic
TTACACAAACAGACTCTTCA+TGG 0.398448 4_2:-58418933 None:intergenic
TGTTGCTGCTTCTTTCCTCC+TGG 0.398539 4_2:-58418650 None:intergenic
GGTTGCTGATTGAGTCTCAT+TGG 0.400764 4_2:-58417621 None:intergenic
AGCTCAGGGTTGGGAACTTC+CGG 0.410700 4_2:+58418607 Msa0610590:CDS
CAACATGAAACAGTTGGCTT+TGG 0.410721 4_2:-58417998 None:intergenic
ATATAGCATATGAAGTGAAA+TGG 0.426540 4_2:+58417373 Msa0610590:exon
TAGTTCTTTGATCAAAGGTT+TGG 0.427713 4_2:-58417642 None:intergenic
GAGTTTATGAAATTTATAAG+AGG 0.443386 4_2:-58419007 None:intergenic
CGTAATTCTTCCTTATTGGT+TGG 0.455287 4_2:-58417500 None:intergenic
TCATACAATATATAATATGT+TGG 0.455808 4_2:-58419048 None:intergenic
GATGCTACAAACTCACCAAC+TGG 0.464067 4_2:-58418719 None:intergenic
ACGTTGTTTGTAGAAATATT+GGG 0.469595 4_2:+58417963 Msa0610590:intron
GTTTGTTGTGGCTGTGATTG+TGG 0.475397 4_2:-58417425 None:intergenic
AAAAGATCCAGCTCAGGGTT+GGG 0.476440 4_2:+58418598 Msa0610590:CDS
TATAGCATATGAAGTGAAAT+GGG 0.476453 4_2:+58417374 Msa0610590:exon
TGCATACAACATGAAACAGT+TGG 0.479048 4_2:-58418004 None:intergenic
GCTGCTTCTTTCCTCCTGGA+AGG 0.481544 4_2:-58418646 None:intergenic
AAACTTAGTTCTTTGATCAA+AGG 0.483857 4_2:-58417647 None:intergenic
CACCGGTTGATAAATCTTCA+AGG 0.484431 4_2:+58417708 Msa0610590:CDS
AATGTTAAAAGATCCAGCTC+AGG 0.485668 4_2:+58418592 Msa0610590:CDS
TGTTGGTGTTGGTGTTGTTG+TGG 0.488043 4_2:-58417470 None:intergenic
CAAAAGCACTCTCAATCACC+TGG 0.496488 4_2:+58418025 Msa0610590:CDS
GGAAGTTCCCAACCCTGAGC+TGG 0.506652 4_2:-58418605 None:intergenic
TAACTATGAGTACATATTGA+AGG 0.507376 4_2:+58417676 Msa0610590:CDS
GTTAAGAGCACGGTGGATAG+AGG 0.513931 4_2:+58418694 Msa0610590:CDS
TTGTACTGCCTTCTTGCTGG+AGG 0.519711 4_2:-58417579 None:intergenic
CATACAATATATAATATGTT+GGG 0.525022 4_2:-58419047 None:intergenic
GTTCTTACATCATAAGACTA+AGG 0.532133 4_2:+58417763 Msa0610590:CDS
TGTACTGCCTTCTTGCTGGA+GGG 0.535237 4_2:-58417578 None:intergenic
ATTACGATCACCTTCGAGAA+GGG 0.539166 4_2:+58417517 Msa0610590:CDS
TAAAAGATCCAGCTCAGGGT+TGG 0.544106 4_2:+58418597 Msa0610590:CDS
GAATGTTGATGTGTTTGTTG+TGG 0.547811 4_2:-58417437 None:intergenic
ATATCAATGTTTGAATATGA+AGG 0.554106 4_2:+58418767 Msa0610590:CDS
AATATGTACTCATAGTTATG+TGG 0.557085 4_2:-58417671 None:intergenic
ACCGGTTGATAAATCTTCAA+GGG 0.558433 4_2:+58417709 Msa0610590:CDS
AGGACAAGTCGAACATTCAC+CGG 0.560100 4_2:-58418626 None:intergenic
TAGCTCTGCTGTGTCAAACA+TGG 0.565237 4_2:-58418980 None:intergenic
TTGAATATGAAGGTGGTATG+TGG 0.566199 4_2:+58418777 Msa0610590:CDS
TTGTGTAATTCATAATATGA+AGG 0.566700 4_2:+58418948 Msa0610590:three_prime_UTR
ATTGAAGGATGCAGATTCAC+CGG 0.568231 4_2:+58417691 Msa0610590:CDS
ATGTGTGATCAGCTATATGC+TGG 0.569259 4_2:+58417737 Msa0610590:CDS
ATAATTTGGATCTTCTGCCC+AGG 0.570223 4_2:-58418043 None:intergenic
AGGAAAGAAGCAGCAACACA+AGG 0.570643 4_2:+58418655 Msa0610590:CDS
TGTTGTGGCTGTGATTGTGG+TGG 0.571307 4_2:-58417422 None:intergenic
AAAATTACCCTCCAGCAAGA+AGG 0.582340 4_2:+58417571 Msa0610590:CDS
AATTACGATCACCTTCGAGA+AGG 0.585667 4_2:+58417516 Msa0610590:CDS
AAACAAGGGCTTGTCATCAA+AGG 0.587551 4_2:+58418800 Msa0610590:CDS
GAAGGTGGTATGTGGAAACA+AGG 0.592943 4_2:+58418785 Msa0610590:CDS
GACACAAGGAAGCTTTCACC+AGG 0.601273 4_2:+58418542 Msa0610590:CDS
AGGCATTGCTATCAAACCAA+AGG 0.606104 4_2:+58418820 Msa0610590:CDS
TAATGGAAAAGTTAAGAGCA+CGG 0.611140 4_2:+58418684 Msa0610590:CDS
ATGTTAAAAGATCCAGCTCA+GGG 0.613664 4_2:+58418593 Msa0610590:CDS
TCAATGTTTGAATATGAAGG+TGG 0.618732 4_2:+58418770 Msa0610590:CDS
TTCATGGAAAATTCGACACA+AGG 0.625618 4_2:+58418528 Msa0610590:CDS
AAGGTGGTATGTGGAAACAA+GGG 0.657478 4_2:+58418786 Msa0610590:CDS
CAGTGAGGGGATGACTGAGG+TGG 0.662615 4_2:+58418475 Msa0610590:intron
CTGAACTGAAGAGAGTGTGT+TGG 0.663119 4_2:+58418498 Msa0610590:CDS
TTGCAGTGAGGGGATGACTG+AGG 0.666138 4_2:+58418472 Msa0610590:intron
CGGTGGATAGAGGTTCCAGT+TGG 0.671489 4_2:+58418704 Msa0610590:CDS
AAAAGCACTCTCAATCACCT+GGG 0.675178 4_2:+58418026 Msa0610590:CDS
TAATTCATAATATGAAGGTG+TGG 0.683915 4_2:+58418953 Msa0610590:three_prime_UTR
GTTCGACTTGTCCTTCCAGG+AGG 0.692090 4_2:+58418635 Msa0610590:CDS
TGGAAAAGTTAAGAGCACGG+TGG 0.775430 4_2:+58418687 Msa0610590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATTTATTTATTATAAA+TGG - chr4_2:58418894-58418913 None:intergenic 0.0%
!! ATTTATTTATTTATTATAAA+TGG - chr4_2:58418894-58418913 None:intergenic 0.0%
!! AGAATAATAATAATAGAAAA+TGG - chr4_2:58419079-58419098 None:intergenic 10.0%
!! AGAATAATAATAATAGAAAA+TGG - chr4_2:58419079-58419098 None:intergenic 10.0%
!! AATAACTAAATTCAATTTCA+AGG - chr4_2:58417879-58417898 None:intergenic 15.0%
!! GATTAAATTGTTGATATAAT+AGG - chr4_2:58418125-58418144 None:intergenic 15.0%
!!! TTTTTCTAAGTTATATGTAA+AGG - chr4_2:58418230-58418249 None:intergenic 15.0%
!! CATACAATATATAATATGTT+GGG - chr4_2:58419050-58419069 None:intergenic 15.0%
!! TCATACAATATATAATATGT+TGG - chr4_2:58419051-58419070 None:intergenic 15.0%
!! AATAACTAAATTCAATTTCA+AGG - chr4_2:58417879-58417898 None:intergenic 15.0%
!! GATTAAATTGTTGATATAAT+AGG - chr4_2:58418125-58418144 None:intergenic 15.0%
!!! TTTTTCTAAGTTATATGTAA+AGG - chr4_2:58418230-58418249 None:intergenic 15.0%
!! CATACAATATATAATATGTT+GGG - chr4_2:58419050-58419069 None:intergenic 15.0%
!! TCATACAATATATAATATGT+TGG - chr4_2:58419051-58419070 None:intergenic 15.0%
!! TAGGAAAAGATAATGATATA+AGG - chr4_2:58418106-58418125 None:intergenic 20.0%
!! TGAAATTATTTGTAATCACT+GGG - chr4_2:58418147-58418166 None:intergenic 20.0%
!! TTGAAATTATTTGTAATCAC+TGG - chr4_2:58418148-58418167 None:intergenic 20.0%
!! ATATCAATGTTTGAATATGA+AGG + chr4_2:58418767-58418786 Msa0610590:CDS 20.0%
!! TTGTGTAATTCATAATATGA+AGG + chr4_2:58418948-58418967 Msa0610590:three_prime_UTR 20.0%
!! GAGTTTATGAAATTTATAAG+AGG - chr4_2:58419010-58419029 None:intergenic 20.0%
!! TAGGAAAAGATAATGATATA+AGG - chr4_2:58418106-58418125 None:intergenic 20.0%
!! TGAAATTATTTGTAATCACT+GGG - chr4_2:58418147-58418166 None:intergenic 20.0%
!! TTGAAATTATTTGTAATCAC+TGG - chr4_2:58418148-58418167 None:intergenic 20.0%
!! ATATCAATGTTTGAATATGA+AGG + chr4_2:58418767-58418786 Msa0610590:CDS 20.0%
!! TTGTGTAATTCATAATATGA+AGG + chr4_2:58418948-58418967 Msa0610590:three_prime_UTR 20.0%
!! GAGTTTATGAAATTTATAAG+AGG - chr4_2:58419010-58419029 None:intergenic 20.0%
! ATATAGCATATGAAGTGAAA+TGG + chr4_2:58417373-58417392 Msa0610590:exon 25.0%
! TATAGCATATGAAGTGAAAT+GGG + chr4_2:58417374-58417393 Msa0610590:exon 25.0%
!! AAACTTAGTTCTTTGATCAA+AGG - chr4_2:58417650-58417669 None:intergenic 25.0%
! AATATGTACTCATAGTTATG+TGG - chr4_2:58417674-58417693 None:intergenic 25.0%
! TAACTATGAGTACATATTGA+AGG + chr4_2:58417676-58417695 Msa0610590:CDS 25.0%
! AACTAAATTCAATTTCAAGG+AGG - chr4_2:58417876-58417895 None:intergenic 25.0%
! AACGTTGTTTGTAGAAATAT+TGG + chr4_2:58417962-58417981 Msa0610590:intron 25.0%
! ACGTTGTTTGTAGAAATATT+GGG + chr4_2:58417963-58417982 Msa0610590:intron 25.0%
! AAGATCCAAATTATTGGAAA+TGG + chr4_2:58418052-58418071 Msa0610590:CDS 25.0%
! TGTATCCATTTCCAATAATT+TGG - chr4_2:58418060-58418079 None:intergenic 25.0%
! TGTAATTCATAGATGTTTCT+TGG - chr4_2:58418347-58418366 None:intergenic 25.0%
! ATTACAAGCTAATTCTATCT+AGG + chr4_2:58418361-58418380 Msa0610590:intron 25.0%
! AAACATAGCTTGATCTAATT+AGG - chr4_2:58418453-58418472 None:intergenic 25.0%
! GAAACTTGATATAAAATTCC+TGG - chr4_2:58418563-58418582 None:intergenic 25.0%
!!! CTATCTATTTTTCATTCCTT+TGG - chr4_2:58418839-58418858 None:intergenic 25.0%
! TAATTCATAATATGAAGGTG+TGG + chr4_2:58418953-58418972 Msa0610590:three_prime_UTR 25.0%
! ATATAGCATATGAAGTGAAA+TGG + chr4_2:58417373-58417392 Msa0610590:exon 25.0%
! TATAGCATATGAAGTGAAAT+GGG + chr4_2:58417374-58417393 Msa0610590:exon 25.0%
!! AAACTTAGTTCTTTGATCAA+AGG - chr4_2:58417650-58417669 None:intergenic 25.0%
! AATATGTACTCATAGTTATG+TGG - chr4_2:58417674-58417693 None:intergenic 25.0%
! TAACTATGAGTACATATTGA+AGG + chr4_2:58417676-58417695 Msa0610590:CDS 25.0%
! AACTAAATTCAATTTCAAGG+AGG - chr4_2:58417876-58417895 None:intergenic 25.0%
! AACGTTGTTTGTAGAAATAT+TGG + chr4_2:58417962-58417981 Msa0610590:intron 25.0%
! ACGTTGTTTGTAGAAATATT+GGG + chr4_2:58417963-58417982 Msa0610590:intron 25.0%
! AAGATCCAAATTATTGGAAA+TGG + chr4_2:58418052-58418071 Msa0610590:CDS 25.0%
! TGTATCCATTTCCAATAATT+TGG - chr4_2:58418060-58418079 None:intergenic 25.0%
! TGTAATTCATAGATGTTTCT+TGG - chr4_2:58418347-58418366 None:intergenic 25.0%
! ATTACAAGCTAATTCTATCT+AGG + chr4_2:58418361-58418380 Msa0610590:intron 25.0%
! AAACATAGCTTGATCTAATT+AGG - chr4_2:58418453-58418472 None:intergenic 25.0%
! GAAACTTGATATAAAATTCC+TGG - chr4_2:58418563-58418582 None:intergenic 25.0%
!!! CTATCTATTTTTCATTCCTT+TGG - chr4_2:58418839-58418858 None:intergenic 25.0%
! TAATTCATAATATGAAGGTG+TGG + chr4_2:58418953-58418972 Msa0610590:three_prime_UTR 25.0%
!! TATTGGTTGGTTCATTTTGT+TGG - chr4_2:58417490-58417509 None:intergenic 30.0%
ACAAAATGAACCAACCAATA+AGG + chr4_2:58417490-58417509 Msa0610590:CDS 30.0%
TGATCGTAATTCTTCCTTAT+TGG - chr4_2:58417507-58417526 None:intergenic 30.0%
!! GGTAATTTTGTTTGATGTTG+AGG - chr4_2:58417560-58417579 None:intergenic 30.0%
TAGTTCTTTGATCAAAGGTT+TGG - chr4_2:58417645-58417664 None:intergenic 30.0%
GTTCTTACATCATAAGACTA+AGG + chr4_2:58417763-58417782 Msa0610590:CDS 30.0%
TTTAGGGACTAAATTGAAGA+TGG - chr4_2:58418291-58418310 None:intergenic 30.0%
GCAACACAAGGAAAATTTAA+TGG + chr4_2:58418667-58418686 Msa0610590:CDS 30.0%
TAATGGAAAAGTTAAGAGCA+CGG + chr4_2:58418684-58418703 Msa0610590:CDS 30.0%
TTTGTAGCATCTGAAAAAGA+TGG + chr4_2:58418731-58418750 Msa0610590:CDS 30.0%
TCAATGTTTGAATATGAAGG+TGG + chr4_2:58418770-58418789 Msa0610590:CDS 30.0%
!! TATTGGTTGGTTCATTTTGT+TGG - chr4_2:58417490-58417509 None:intergenic 30.0%
ACAAAATGAACCAACCAATA+AGG + chr4_2:58417490-58417509 Msa0610590:CDS 30.0%
TGATCGTAATTCTTCCTTAT+TGG - chr4_2:58417507-58417526 None:intergenic 30.0%
!! GGTAATTTTGTTTGATGTTG+AGG - chr4_2:58417560-58417579 None:intergenic 30.0%
TAGTTCTTTGATCAAAGGTT+TGG - chr4_2:58417645-58417664 None:intergenic 30.0%
GTTCTTACATCATAAGACTA+AGG + chr4_2:58417763-58417782 Msa0610590:CDS 30.0%
TTTAGGGACTAAATTGAAGA+TGG - chr4_2:58418291-58418310 None:intergenic 30.0%
GCAACACAAGGAAAATTTAA+TGG + chr4_2:58418667-58418686 Msa0610590:CDS 30.0%
TAATGGAAAAGTTAAGAGCA+CGG + chr4_2:58418684-58418703 Msa0610590:CDS 30.0%
TTTGTAGCATCTGAAAAAGA+TGG + chr4_2:58418731-58418750 Msa0610590:CDS 30.0%
TCAATGTTTGAATATGAAGG+TGG + chr4_2:58418770-58418789 Msa0610590:CDS 30.0%
! GAATGTTGATGTGTTTGTTG+TGG - chr4_2:58417440-58417459 None:intergenic 35.0%
! TTGGTTCATTTTGTTGGTGT+TGG - chr4_2:58417484-58417503 None:intergenic 35.0%
CGTAATTCTTCCTTATTGGT+TGG - chr4_2:58417503-58417522 None:intergenic 35.0%
!! ACCGGTTGATAAATCTTCAA+GGG + chr4_2:58417709-58417728 Msa0610590:CDS 35.0%
TCCCTTGAAGATTTATCAAC+CGG - chr4_2:58417713-58417732 None:intergenic 35.0%
CAAGGAGGACAATTGTAAAA+TGG - chr4_2:58417861-58417880 None:intergenic 35.0%
TGCATACAACATGAAACAGT+TGG - chr4_2:58418007-58418026 None:intergenic 35.0%
GGATACAGCAAAAAGATGTT+AGG + chr4_2:58418073-58418092 Msa0610590:CDS 35.0%
!! TTCTATCTAGGACTTTTGTC+TGG + chr4_2:58418373-58418392 Msa0610590:intron 35.0%
TTCATGGAAAATTCGACACA+AGG + chr4_2:58418528-58418547 Msa0610590:CDS 35.0%
AATGTTAAAAGATCCAGCTC+AGG + chr4_2:58418592-58418611 Msa0610590:CDS 35.0%
ATGTTAAAAGATCCAGCTCA+GGG + chr4_2:58418593-58418612 Msa0610590:CDS 35.0%
TTGAATATGAAGGTGGTATG+TGG + chr4_2:58418777-58418796 Msa0610590:CDS 35.0%
TTACACAAACAGACTCTTCA+TGG - chr4_2:58418936-58418955 None:intergenic 35.0%
! GAATGTTGATGTGTTTGTTG+TGG - chr4_2:58417440-58417459 None:intergenic 35.0%
! TTGGTTCATTTTGTTGGTGT+TGG - chr4_2:58417484-58417503 None:intergenic 35.0%
CGTAATTCTTCCTTATTGGT+TGG - chr4_2:58417503-58417522 None:intergenic 35.0%
!! ACCGGTTGATAAATCTTCAA+GGG + chr4_2:58417709-58417728 Msa0610590:CDS 35.0%
TCCCTTGAAGATTTATCAAC+CGG - chr4_2:58417713-58417732 None:intergenic 35.0%
CAAGGAGGACAATTGTAAAA+TGG - chr4_2:58417861-58417880 None:intergenic 35.0%
TGCATACAACATGAAACAGT+TGG - chr4_2:58418007-58418026 None:intergenic 35.0%
GGATACAGCAAAAAGATGTT+AGG + chr4_2:58418073-58418092 Msa0610590:CDS 35.0%
!! TTCTATCTAGGACTTTTGTC+TGG + chr4_2:58418373-58418392 Msa0610590:intron 35.0%
TTCATGGAAAATTCGACACA+AGG + chr4_2:58418528-58418547 Msa0610590:CDS 35.0%
AATGTTAAAAGATCCAGCTC+AGG + chr4_2:58418592-58418611 Msa0610590:CDS 35.0%
ATGTTAAAAGATCCAGCTCA+GGG + chr4_2:58418593-58418612 Msa0610590:CDS 35.0%
TTGAATATGAAGGTGGTATG+TGG + chr4_2:58418777-58418796 Msa0610590:CDS 35.0%
TTACACAAACAGACTCTTCA+TGG - chr4_2:58418936-58418955 None:intergenic 35.0%
AATTACGATCACCTTCGAGA+AGG + chr4_2:58417516-58417535 Msa0610590:CDS 40.0%
ATTACGATCACCTTCGAGAA+GGG + chr4_2:58417517-58417536 Msa0610590:CDS 40.0%
! AACAGATTTTCCCTTCTCGA+AGG - chr4_2:58417530-58417549 None:intergenic 40.0%
AAAATTACCCTCCAGCAAGA+AGG + chr4_2:58417571-58417590 Msa0610590:CDS 40.0%
ATTGAAGGATGCAGATTCAC+CGG + chr4_2:58417691-58417710 Msa0610590:CDS 40.0%
!! CACCGGTTGATAAATCTTCA+AGG + chr4_2:58417708-58417727 Msa0610590:CDS 40.0%
ATGTGTGATCAGCTATATGC+TGG + chr4_2:58417737-58417756 Msa0610590:CDS 40.0%
! CAACATGAAACAGTTGGCTT+TGG - chr4_2:58418001-58418020 None:intergenic 40.0%
!! AAAAGCACTCTCAATCACCT+GGG + chr4_2:58418026-58418045 Msa0610590:CDS 40.0%
ATAATTTGGATCTTCTGCCC+AGG - chr4_2:58418046-58418065 None:intergenic 40.0%
GGGCAGAAGATCCAAATTAT+TGG + chr4_2:58418046-58418065 Msa0610590:CDS 40.0%
! TCAAGCTATGTTTTGCAGTG+AGG + chr4_2:58418460-58418479 Msa0610590:intron 40.0%
! CAAGCTATGTTTTGCAGTGA+GGG + chr4_2:58418461-58418480 Msa0610590:intron 40.0%
! AAGCTATGTTTTGCAGTGAG+GGG + chr4_2:58418462-58418481 Msa0610590:intron 40.0%
!! GTGTGTTGGTTAGAAGTTCA+TGG + chr4_2:58418512-58418531 Msa0610590:CDS 40.0%
GTAGCATCTGAAAAAGATGG+CGG + chr4_2:58418734-58418753 Msa0610590:CDS 40.0%
AAGGTGGTATGTGGAAACAA+GGG + chr4_2:58418786-58418805 Msa0610590:CDS 40.0%
AAACAAGGGCTTGTCATCAA+AGG + chr4_2:58418800-58418819 Msa0610590:CDS 40.0%
! AGGCATTGCTATCAAACCAA+AGG + chr4_2:58418820-58418839 Msa0610590:CDS 40.0%
AATTACGATCACCTTCGAGA+AGG + chr4_2:58417516-58417535 Msa0610590:CDS 40.0%
ATTACGATCACCTTCGAGAA+GGG + chr4_2:58417517-58417536 Msa0610590:CDS 40.0%
! AACAGATTTTCCCTTCTCGA+AGG - chr4_2:58417530-58417549 None:intergenic 40.0%
AAAATTACCCTCCAGCAAGA+AGG + chr4_2:58417571-58417590 Msa0610590:CDS 40.0%
ATTGAAGGATGCAGATTCAC+CGG + chr4_2:58417691-58417710 Msa0610590:CDS 40.0%
!! CACCGGTTGATAAATCTTCA+AGG + chr4_2:58417708-58417727 Msa0610590:CDS 40.0%
ATGTGTGATCAGCTATATGC+TGG + chr4_2:58417737-58417756 Msa0610590:CDS 40.0%
! CAACATGAAACAGTTGGCTT+TGG - chr4_2:58418001-58418020 None:intergenic 40.0%
!! AAAAGCACTCTCAATCACCT+GGG + chr4_2:58418026-58418045 Msa0610590:CDS 40.0%
ATAATTTGGATCTTCTGCCC+AGG - chr4_2:58418046-58418065 None:intergenic 40.0%
GGGCAGAAGATCCAAATTAT+TGG + chr4_2:58418046-58418065 Msa0610590:CDS 40.0%
! TCAAGCTATGTTTTGCAGTG+AGG + chr4_2:58418460-58418479 Msa0610590:intron 40.0%
! CAAGCTATGTTTTGCAGTGA+GGG + chr4_2:58418461-58418480 Msa0610590:intron 40.0%
! AAGCTATGTTTTGCAGTGAG+GGG + chr4_2:58418462-58418481 Msa0610590:intron 40.0%
!! GTGTGTTGGTTAGAAGTTCA+TGG + chr4_2:58418512-58418531 Msa0610590:CDS 40.0%
GTAGCATCTGAAAAAGATGG+CGG + chr4_2:58418734-58418753 Msa0610590:CDS 40.0%
AAGGTGGTATGTGGAAACAA+GGG + chr4_2:58418786-58418805 Msa0610590:CDS 40.0%
AAACAAGGGCTTGTCATCAA+AGG + chr4_2:58418800-58418819 Msa0610590:CDS 40.0%
! AGGCATTGCTATCAAACCAA+AGG + chr4_2:58418820-58418839 Msa0610590:CDS 40.0%
!! GTTTGTTGTGGCTGTGATTG+TGG - chr4_2:58417428-58417447 None:intergenic 45.0%
!! TGTTGGTGTTGGTGTTGTTG+TGG - chr4_2:58417473-58417492 None:intergenic 45.0%
! GTTTTGTACTGCCTTCTTGC+TGG - chr4_2:58417585-58417604 None:intergenic 45.0%
! GGTTGCTGATTGAGTCTCAT+TGG - chr4_2:58417624-58417643 None:intergenic 45.0%
!! CAAAAGCACTCTCAATCACC+TGG + chr4_2:58418025-58418044 Msa0610590:CDS 45.0%
! CTGAACTGAAGAGAGTGTGT+TGG + chr4_2:58418498-58418517 Msa0610590:CDS 45.0%
TAAAAGATCCAGCTCAGGGT+TGG + chr4_2:58418597-58418616 Msa0610590:CDS 45.0%
AAAAGATCCAGCTCAGGGTT+GGG + chr4_2:58418598-58418617 Msa0610590:CDS 45.0%
AGGACAAGTCGAACATTCAC+CGG - chr4_2:58418629-58418648 None:intergenic 45.0%
! AATGTTCGACTTGTCCTTCC+AGG + chr4_2:58418632-58418651 Msa0610590:CDS 45.0%
AGGAAAGAAGCAGCAACACA+AGG + chr4_2:58418655-58418674 Msa0610590:CDS 45.0%
! TGGAAAAGTTAAGAGCACGG+TGG + chr4_2:58418687-58418706 Msa0610590:CDS 45.0%
GATGCTACAAACTCACCAAC+TGG - chr4_2:58418722-58418741 None:intergenic 45.0%
! TGAAAAAGATGGCGGTGAGA+TGG + chr4_2:58418742-58418761 Msa0610590:CDS 45.0%
GAAGGTGGTATGTGGAAACA+AGG + chr4_2:58418785-58418804 Msa0610590:CDS 45.0%
! TAGCTCTGCTGTGTCAAACA+TGG - chr4_2:58418983-58419002 None:intergenic 45.0%
!! GTTTGTTGTGGCTGTGATTG+TGG - chr4_2:58417428-58417447 None:intergenic 45.0%
!! TGTTGGTGTTGGTGTTGTTG+TGG - chr4_2:58417473-58417492 None:intergenic 45.0%
! GTTTTGTACTGCCTTCTTGC+TGG - chr4_2:58417585-58417604 None:intergenic 45.0%
! GGTTGCTGATTGAGTCTCAT+TGG - chr4_2:58417624-58417643 None:intergenic 45.0%
!! CAAAAGCACTCTCAATCACC+TGG + chr4_2:58418025-58418044 Msa0610590:CDS 45.0%
! CTGAACTGAAGAGAGTGTGT+TGG + chr4_2:58418498-58418517 Msa0610590:CDS 45.0%
TAAAAGATCCAGCTCAGGGT+TGG + chr4_2:58418597-58418616 Msa0610590:CDS 45.0%
AAAAGATCCAGCTCAGGGTT+GGG + chr4_2:58418598-58418617 Msa0610590:CDS 45.0%
AGGACAAGTCGAACATTCAC+CGG - chr4_2:58418629-58418648 None:intergenic 45.0%
! AATGTTCGACTTGTCCTTCC+AGG + chr4_2:58418632-58418651 Msa0610590:CDS 45.0%
AGGAAAGAAGCAGCAACACA+AGG + chr4_2:58418655-58418674 Msa0610590:CDS 45.0%
! TGGAAAAGTTAAGAGCACGG+TGG + chr4_2:58418687-58418706 Msa0610590:CDS 45.0%
GATGCTACAAACTCACCAAC+TGG - chr4_2:58418722-58418741 None:intergenic 45.0%
! TGAAAAAGATGGCGGTGAGA+TGG + chr4_2:58418742-58418761 Msa0610590:CDS 45.0%
GAAGGTGGTATGTGGAAACA+AGG + chr4_2:58418785-58418804 Msa0610590:CDS 45.0%
! TAGCTCTGCTGTGTCAAACA+TGG - chr4_2:58418983-58419002 None:intergenic 45.0%
!! TAAAAAATTTATATAGTTTA+GGG - chr4_2:58418307-58418326 None:intergenic 5.0%
!! TTAAAAAATTTATATAGTTT+AGG - chr4_2:58418308-58418327 None:intergenic 5.0%
!! TAAAAAATTTATATAGTTTA+GGG - chr4_2:58418307-58418326 None:intergenic 5.0%
!! TTAAAAAATTTATATAGTTT+AGG - chr4_2:58418308-58418327 None:intergenic 5.0%
TGTTGTGGCTGTGATTGTGG+TGG - chr4_2:58417425-58417444 None:intergenic 50.0%
TGTACTGCCTTCTTGCTGGA+GGG - chr4_2:58417581-58417600 None:intergenic 50.0%
TTGTACTGCCTTCTTGCTGG+AGG - chr4_2:58417582-58417601 None:intergenic 50.0%
GACACAAGGAAGCTTTCACC+AGG + chr4_2:58418542-58418561 Msa0610590:CDS 50.0%
! TGTTGCTGCTTCTTTCCTCC+TGG - chr4_2:58418653-58418672 None:intergenic 50.0%
! GTTAAGAGCACGGTGGATAG+AGG + chr4_2:58418694-58418713 Msa0610590:CDS 50.0%
TGTTGTGGCTGTGATTGTGG+TGG - chr4_2:58417425-58417444 None:intergenic 50.0%
TGTACTGCCTTCTTGCTGGA+GGG - chr4_2:58417581-58417600 None:intergenic 50.0%
TTGTACTGCCTTCTTGCTGG+AGG - chr4_2:58417582-58417601 None:intergenic 50.0%
GACACAAGGAAGCTTTCACC+AGG + chr4_2:58418542-58418561 Msa0610590:CDS 50.0%
! TGTTGCTGCTTCTTTCCTCC+TGG - chr4_2:58418653-58418672 None:intergenic 50.0%
! GTTAAGAGCACGGTGGATAG+AGG + chr4_2:58418694-58418713 Msa0610590:CDS 50.0%
TTGCAGTGAGGGGATGACTG+AGG + chr4_2:58418472-58418491 Msa0610590:intron 55.0%
AGCTCAGGGTTGGGAACTTC+CGG + chr4_2:58418607-58418626 Msa0610590:CDS 55.0%
! GTTCGACTTGTCCTTCCAGG+AGG + chr4_2:58418635-58418654 Msa0610590:CDS 55.0%
GCTGCTTCTTTCCTCCTGGA+AGG - chr4_2:58418649-58418668 None:intergenic 55.0%
CGGTGGATAGAGGTTCCAGT+TGG + chr4_2:58418704-58418723 Msa0610590:CDS 55.0%
TTGCAGTGAGGGGATGACTG+AGG + chr4_2:58418472-58418491 Msa0610590:intron 55.0%
AGCTCAGGGTTGGGAACTTC+CGG + chr4_2:58418607-58418626 Msa0610590:CDS 55.0%
! GTTCGACTTGTCCTTCCAGG+AGG + chr4_2:58418635-58418654 Msa0610590:CDS 55.0%
GCTGCTTCTTTCCTCCTGGA+AGG - chr4_2:58418649-58418668 None:intergenic 55.0%
CGGTGGATAGAGGTTCCAGT+TGG + chr4_2:58418704-58418723 Msa0610590:CDS 55.0%
CAGTGAGGGGATGACTGAGG+TGG + chr4_2:58418475-58418494 Msa0610590:intron 60.0%
GGAAGTTCCCAACCCTGAGC+TGG - chr4_2:58418608-58418627 None:intergenic 60.0%
CAGTGAGGGGATGACTGAGG+TGG + chr4_2:58418475-58418494 Msa0610590:intron 60.0%
GGAAGTTCCCAACCCTGAGC+TGG - chr4_2:58418608-58418627 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 58417345 58419099 58417345 ID=Msa0610590;Name=Msa0610590
chr4_2 mRNA 58417345 58419099 58417345 ID=Msa0610590-mRNA-1;Parent=Msa0610590;Name=Msa0610590-mRNA-1;_AED=0.01;_eAED=0.01;_QI=47|1|1|1|1|1|3|252|293
chr4_2 exon 58417345 58417784 58417345 ID=Msa0610590-mRNA-1:exon:15327;Parent=Msa0610590-mRNA-1
chr4_2 exon 58417976 58418094 58417976 ID=Msa0610590-mRNA-1:exon:15328;Parent=Msa0610590-mRNA-1
chr4_2 exon 58418478 58419099 58418478 ID=Msa0610590-mRNA-1:exon:15329;Parent=Msa0610590-mRNA-1
chr4_2 five_prime_UTR 58417345 58417391 58417345 ID=Msa0610590-mRNA-1:five_prime_utr;Parent=Msa0610590-mRNA-1
chr4_2 CDS 58417392 58417784 58417392 ID=Msa0610590-mRNA-1:cds;Parent=Msa0610590-mRNA-1
chr4_2 CDS 58417976 58418094 58417976 ID=Msa0610590-mRNA-1:cds;Parent=Msa0610590-mRNA-1
chr4_2 CDS 58418478 58418847 58418478 ID=Msa0610590-mRNA-1:cds;Parent=Msa0610590-mRNA-1
chr4_2 three_prime_UTR 58418848 58419099 58418848 ID=Msa0610590-mRNA-1:three_prime_utr;Parent=Msa0610590-mRNA-1
Gene Sequence

>Msa0610590

ATGGGTGCTTCTCTATCAGAGCTAGAGCAACCACCACAATCACAGCCACAACAAACACATCAACATTCACAGTTACAGCCACAACAACACCAACACCAACAAAATGAACCAACCAATAAGGAAGAATTACGATCACCTTCGAGAAGGGAAAATCTGTTGTCGTCTCCTCAACATCAAACAAAATTACCCTCCAGCAAGAAGGCAGTACAAAACTCTACAGTTGTAAAATCCAATGAGACTCAATCAGCAACCAAACCTTTGATCAAAGAACTAAGTTTGCCACATAACTATGAGTACATATTGAAGGATGCAGATTCACCGGTTGATAAATCTTCAAGGGAAAAGATGTGTGATCAGCTATATGCTGGAGTGTTCTTACATCATAAGACTAAGAAATATTGGGTAGAGAAGAACTCCAAAGCCAACTGTTTCATGTTGTATGCAAAAGCACTCTCAATCACCTGGGCAGAAGATCCAAATTATTGGAAATGGATACAGCAAAAAGATGTTAGTGAGGGGATGACTGAGGTGGCTGAACTGAAGAGAGTGTGTTGGTTAGAAGTTCATGGAAAATTCGACACAAGGAAGCTTTCACCAGGAATTTTATATCAAGTTTCATTTATTATAATGTTAAAAGATCCAGCTCAGGGTTGGGAACTTCCGGTGAATGTTCGACTTGTCCTTCCAGGAGGAAAGAAGCAGCAACACAAGGAAAATTTAATGGAAAAGTTAAGAGCACGGTGGATAGAGGTTCCAGTTGGTGAGTTTGTAGCATCTGAAAAAGATGGCGGTGAGATGGAGATATCAATGTTTGAATATGAAGGTGGTATGTGGAAACAAGGGCTTGTCATCAAAGGCATTGCTATCAAACCAAAGGAATGA

Protein sequence

>Msa0610590

MGASLSELEQPPQSQPQQTHQHSQLQPQQHQHQQNEPTNKEELRSPSRRENLLSSPQHQTKLPSSKKAVQNSTVVKSNETQSATKPLIKELSLPHNYEYILKDADSPVDKSSREKMCDQLYAGVFLHHKTKKYWVEKNSKANCFMLYAKALSITWAEDPNYWKWIQQKDVSEGMTEVAELKRVCWLEVHGKFDTRKLSPGILYQVSFIIMLKDPAQGWELPVNVRLVLPGGKKQQHKENLMEKLRARWIEVPVGEFVASEKDGGEMEISMFEYEGGMWKQGLVIKGIAIKPKE*