AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0876850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0876850 MtrunA17_Chr6g0458111 100.000 447 0 0 1 447 1 447 0.0 918
Msa0876850 MtrunA17_Chr6g0458091 100.000 447 0 0 1 447 1 447 0.0 918
Msa0876850 MtrunA17_Chr1g0200071 96.652 448 14 1 1 447 1 448 0.0 895
Msa0876850 MtrunA17_Chr1g0200091 96.652 448 14 1 1 447 1 448 0.0 895
Msa0876850 MtrunA17_Chr1g0200121 96.429 448 15 1 1 447 1 448 0.0 895
Msa0876850 MtrunA17_Chr4g0005781 95.302 447 21 0 1 447 1 447 0.0 891
Msa0876850 MtrunA17_Chr1g0150331 88.470 451 22 3 1 447 1 425 0.0 805
Msa0876850 MtrunA17_Chr1g0193591 81.336 434 81 0 1 434 1 434 0.0 739
Msa0876850 MtrunA17_Chr1g0204031 80.182 439 82 3 1 439 1 434 0.0 726
Msa0876850 MtrunA17_Chr1g0156421 78.802 434 92 0 1 434 1 434 0.0 724
Msa0876850 MtrunA17_Chr8g0340771 77.951 449 96 2 1 446 1 449 0.0 713
Msa0876850 MtrunA17_Chr5g0415391 71.537 397 113 0 39 435 1 397 0.0 591
Msa0876850 MtrunA17_Chr1g0196251 67.990 403 101 2 4 405 5 380 0.0 569
Msa0876850 MtrunA17_Chr8g0336511 78.287 327 70 1 1 326 66 392 0.0 541
Msa0876850 MtrunA17_Chr2g0319341 71.681 339 94 1 102 438 1 339 2.96e-180 510
Msa0876850 MtrunA17_Chr2g0298371 67.692 325 86 2 102 424 1 308 4.07e-159 452
Msa0876850 MtrunA17_Chr8g0340371 69.710 241 70 2 1 240 1 239 6.97e-118 344
Msa0876850 MtrunA17_Chr1g0210931 60.403 298 63 4 155 446 1 249 3.18e-114 335
Msa0876850 MtrunA17_Chr2g0318291 71.681 226 59 3 1 223 1 224 1.40e-112 330
Msa0876850 MtrunA17_Chr6g0483121 37.731 432 255 6 5 428 89 514 9.51e-97 300
Msa0876850 MtrunA17_Chr8g0392641 37.731 432 259 6 4 429 143 570 6.50e-92 289
Msa0876850 MtrunA17_Chr1g0204041 85.806 155 22 0 1 155 1 155 1.58e-90 272
Msa0876850 MtrunA17_Chr8g0380091 35.566 433 270 6 7 433 275 704 1.60e-90 289
Msa0876850 MtrunA17_Chr1g0200111 74.011 177 36 1 264 430 1 177 1.03e-85 259
Msa0876850 MtrunA17_Chr2g0318281 67.368 190 62 0 243 432 5 194 4.93e-83 254
Msa0876850 MtrunA17_Chr1g0156411 81.884 138 25 0 8 145 12 149 1.52e-78 240
Msa0876850 MtrunA17_Chr8g0340361 58.378 185 61 2 264 433 1 184 1.04e-64 206
Msa0876850 MtrunA17_Chr4g0026961 53.608 194 74 4 195 385 32 212 1.19e-57 189
Msa0876850 MtrunA17_Chr4g0026961 78.571 42 9 0 1 42 1 42 3.47e-13 68.6
Msa0876850 MtrunA17_Chr2g0298381 77.778 99 22 0 1 99 1 99 7.03e-48 159
Msa0876850 MtrunA17_Chr8g0341021 75.490 102 25 0 3 104 4 105 1.99e-47 158
Msa0876850 MtrunA17_Chr7g0259481 30.227 440 243 14 3 429 59 447 1.30e-45 164
Msa0876850 MtrunA17_Chr3g0116821 30.631 444 247 15 3 429 88 487 4.06e-42 155
Msa0876850 MtrunA17_Chr1g0211481 78.481 79 17 0 5 83 4 82 6.12e-36 128
Msa0876850 MtrunA17_Chr2g0319351 80.822 73 14 0 5 77 5 77 7.07e-35 124
Msa0876850 MtrunA17_Chr1g0200101 72.414 87 18 2 154 236 29 113 1.32e-34 125
Msa0876850 MtrunA17_Chr1g0200101 73.469 49 13 0 21 69 2 50 8.51e-17 76.3
Msa0876850 MtrunA17_Chr2g0287231 32.389 247 135 6 1 244 10 227 5.11e-31 119
Msa0876850 MtrunA17_Chr8g0341041 35.455 220 79 5 213 432 2 158 1.00e-28 110
Msa0876850 MtrunA17_Chr7g0261801 69.697 66 17 1 155 220 1 63 4.19e-24 95.5
Msa0876850 MtrunA17_Chr3g0130991 26.103 272 144 9 9 272 85 307 2.23e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0876850 AT1G07920.1 95.516 446 20 0 1 446 1 446 0.0 890
Msa0876850 AT1G07940.4 95.516 446 20 0 1 446 1 446 0.0 890
Msa0876850 AT1G07940.1 95.516 446 20 0 1 446 1 446 0.0 890
Msa0876850 AT1G07940.2 95.516 446 20 0 1 446 1 446 0.0 890
Msa0876850 AT1G07940.3 95.516 446 20 0 1 446 1 446 0.0 890
Msa0876850 AT5G60390.3 95.516 446 20 0 1 446 1 446 0.0 890
Msa0876850 AT5G60390.1 95.516 446 20 0 1 446 1 446 0.0 890
Msa0876850 AT5G60390.2 95.516 446 20 0 1 446 1 446 0.0 890
Msa0876850 AT1G07930.1 95.516 446 20 0 1 446 1 446 0.0 890
Msa0876850 AT1G07930.2 98.824 255 3 0 1 255 1 255 0.0 530
Msa0876850 AT1G07930.2 90.517 116 11 0 331 446 254 369 1.84e-68 223
Msa0876850 AT1G18070.1 37.412 425 258 5 5 424 99 520 6.81e-94 293
Msa0876850 AT1G18070.2 37.412 425 258 5 5 424 99 520 6.81e-94 293
Msa0876850 AT1G18070.3 36.697 436 257 6 5 424 99 531 1.07e-90 285
Msa0876850 AT5G10630.1 35.765 425 265 5 7 426 239 660 1.90e-90 288
Msa0876850 AT5G10630.5 35.765 425 265 5 7 426 240 661 1.94e-90 288
Msa0876850 AT5G10630.2 35.765 425 265 5 7 426 240 661 1.94e-90 288
Msa0876850 AT5G10630.3 35.765 425 265 5 7 426 310 731 1.01e-89 288
Msa0876850 AT5G10630.4 35.765 425 265 5 7 426 315 736 1.14e-89 288
Msa0876850 AT1G35550.1 77.885 104 23 0 335 438 1 104 5.74e-54 176
Msa0876850 AT4G20360.1 30.594 438 255 10 3 429 75 474 1.30e-44 162
Msa0876850 AT4G20360.2 30.594 438 255 10 3 429 75 474 1.30e-44 162
Msa0876850 AT4G02930.1 29.977 437 249 13 3 429 63 452 2.06e-44 161
Msa0876850 AT2G31060.3 25.000 264 160 8 9 263 61 295 1.61e-12 70.1
Msa0876850 AT2G31060.2 24.615 260 162 7 9 263 61 291 2.26e-11 66.6
Msa0876850 AT5G08650.1 27.037 270 144 10 9 272 88 310 2.47e-11 66.2
Msa0876850 AT5G08650.2 27.037 270 144 10 9 272 88 310 2.74e-11 66.2

Find 157 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCGGTATGGTTGTGACTTT+TGG 0.205642 6_1:+15357591 Msa0876850:CDS
GGGCTTGTCTGTGGGTCTCT+TGG 0.228126 6_1:-15357484 None:intergenic
CTTCTTCTTGGCAGCAGCTT+TGG 0.247525 6_1:-15358126 None:intergenic
GGCTTGTCTGTGGGTCTCTT+GGG 0.275199 6_1:-15357483 None:intergenic
GTTCTGTAAGTTTCTAAAAC+TGG 0.293208 6_1:-15358244 None:intergenic
AAGATAACAAACTATTAAAA+AGG 0.305342 6_1:-15358182 None:intergenic
CCTCAGCTGAATCGAAATCT+AGG 0.309482 6_1:-15355697 None:intergenic
AACCATAGAGATAAAATAAA+AGG 0.311270 6_1:-15358418 None:intergenic
GGAGGGAGATCACTTCTTCT+TGG 0.339899 6_1:-15358138 None:intergenic
AGTTTCAAAAGGCAGCTAAA+AGG 0.341707 6_1:+15358321 Msa0876850:three_prime_UTR
GCTCTCACTGAAGCTCTTCC+AGG 0.343392 6_1:+15357663 Msa0876850:CDS
TTGCAAGATGTTTACAAGAT+TGG 0.346171 6_1:+15357519 Msa0876850:CDS
GTCTCTTGGGCTCGTTGATC+TGG 0.347889 6_1:-15357470 None:intergenic
TTCATCAAGAACATGATTAC+TGG 0.350652 6_1:+15357003 Msa0876850:CDS
CATATCAACATTGTCGTCAT+TGG 0.354281 6_1:+15356730 Msa0876850:CDS
ATCACCATTCTTCAAGAACT+TGG 0.354818 6_1:-15357943 None:intergenic
GTTTACAAGATTGGTGGTAT+TGG 0.363154 6_1:+15357528 Msa0876850:CDS
GGCAGCAGCTTTGGTGACTT+TGG 0.372842 6_1:-15358117 None:intergenic
AAGTTGGCAGCTTCCTTGGC+AGG 0.382611 6_1:-15357768 None:intergenic
TAGTATACTCACTAATCATT+TGG 0.386388 6_1:-15358603 None:intergenic
GTACCGAGCCTTTGAGTACT+TGG 0.392389 6_1:-15357286 None:intergenic
ACCAGATCGCCTGTCGATCT+TGG 0.401564 6_1:-15357901 None:intergenic
TCACCTTCAAAACCGGAGAT+TGG 0.405248 6_1:-15357381 None:intergenic
AGTGAAGTTGGCAGCTTCCT+TGG 0.410082 6_1:-15357772 None:intergenic
ATATTGTCCTTGATTGTTTG+TGG 0.416170 6_1:+15358451 Msa0876850:three_prime_UTR
TTCCTTGGCAGGGTCATCCT+TGG 0.427055 6_1:-15357757 None:intergenic
ATCCCATTCGTTCCAATCTC+CGG 0.427548 6_1:+15357369 Msa0876850:CDS
ATGGGTTCTTGACAAGCTTA+AGG 0.430277 6_1:+15356882 Msa0876850:CDS
AAGCCTGAGGGGCTTGTCTG+TGG 0.432212 6_1:-15357493 None:intergenic
TCTGGAAAATCAACAACAAC+TGG 0.436226 6_1:+15356763 Msa0876850:CDS
AGCCTGAGGGGCTTGTCTGT+GGG 0.440652 6_1:-15357492 None:intergenic
CCGGTCTCAACACGTCCAAC+TGG 0.449484 6_1:-15357558 None:intergenic
CATGTTGTCACCTTCAAAAC+CGG 0.451540 6_1:-15357388 None:intergenic
GGCAGGGTCATCCTTGGAGT+TGG 0.452433 6_1:-15357751 None:intergenic
TACCGAGCCTTTGAGTACTT+GGG 0.452472 6_1:-15357285 None:intergenic
ATGAACCACCCTGGTCAGAT+TGG 0.454810 6_1:+15357810 Msa0876850:CDS
GGTCTCAACCACCATGGGCT+TGG 0.458699 6_1:-15357991 None:intergenic
CTCAACCACCATGGGCTTGG+TGG 0.468734 6_1:-15357988 None:intergenic
CTGAATCGAAATCTAGGGTT+GGG 0.471832 6_1:-15355691 None:intergenic
TAAGGACTGCACAATCAGCC+TGG 0.473376 6_1:-15357032 None:intergenic
TTTGGTGACTTTGGCTCCAG+TGG 0.473646 6_1:-15358108 None:intergenic
ACCAAGATCGACAGGCGATC+TGG 0.474000 6_1:+15357900 Msa0876850:CDS
CAAGATGTTTACAAGATTGG+TGG 0.475647 6_1:+15357522 Msa0876850:CDS
GTCATTGGACATGTCGACTC+TGG 0.490675 6_1:+15356745 Msa0876850:CDS
AGTTTCATCCTACTTGAAGA+AGG 0.496964 6_1:+15357326 Msa0876850:CDS
TCCAAAAGTCACAACCATAC+CGG 0.497778 6_1:-15357592 None:intergenic
CTTAAGGCTGAGCGTGAAAG+AGG 0.501131 6_1:+15356898 Msa0876850:CDS
TAAGAGTCTTGAGTTTCAAA+AGG 0.501174 6_1:+15358310 Msa0876850:three_prime_UTR
CATCAAGGCTGTGGAGAAGA+AGG 0.501366 6_1:+15358082 Msa0876850:CDS
CACCAACCTTGACTGGTACA+AGG 0.502465 6_1:+15357422 Msa0876850:CDS
TCATCCTACTTGAAGAAGGT+TGG 0.505639 6_1:+15357330 Msa0876850:CDS
GATCGACAGGCGATCTGGTA+AGG 0.506331 6_1:+15357905 Msa0876850:CDS
CACCCTGGTCAGATTGGAAA+CGG 0.512174 6_1:+15357816 Msa0876850:CDS
GACCCACAGACAAGCCCCTC+AGG 0.515484 6_1:+15357490 Msa0876850:CDS
TACAGAACTGGGTTCTTGAT+CGG 0.517099 6_1:+15358259 Msa0876850:three_prime_UTR
CTTGTACCAGTCAAGGTTGG+TGG 0.518944 6_1:-15357421 None:intergenic
AAACCGGAGATTGGAACGAA+TGG 0.520045 6_1:-15357372 None:intergenic
TTGGTGACTTTGGCTCCAGT+GGG 0.520107 6_1:-15358107 None:intergenic
ATCATTGACTCCACCACTGG+TGG 0.521304 6_1:+15357054 Msa0876850:CDS
AGAGGTCCACCAACCTTGAC+TGG 0.523105 6_1:+15357415 Msa0876850:CDS
GAGCCCAAGTTCTTGAAGAA+TGG 0.525810 6_1:+15357939 Msa0876850:CDS
ACCGAGCCTTTGAGTACTTG+GGG 0.525913 6_1:-15357284 None:intergenic
TTGAATCCGACATTGTCTCC+TGG 0.526013 6_1:-15357681 None:intergenic
TCAACCACCATGGGCTTGGT+GGG 0.529820 6_1:-15357987 None:intergenic
AACCGGAGATTGGAACGAAT+GGG 0.531600 6_1:-15357371 None:intergenic
CTTATCATTGACTCCACCAC+TGG 0.532051 6_1:+15357051 Msa0876850:CDS
AGCGTTCATTCAAGTACGCA+TGG 0.534658 6_1:+15356863 Msa0876850:CDS
TTGATGAAATCACGATGTCC+TGG 0.536130 6_1:-15356988 None:intergenic
TGCACAGTCATTGATGCTCC+AGG 0.539947 6_1:+15356970 Msa0876850:CDS
TCACCATTCTTCAAGAACTT+GGG 0.540637 6_1:-15357942 None:intergenic
CTCAGCACCACAAACAATCA+AGG 0.545027 6_1:-15358458 None:intergenic
GATGACTTGGGAAGTGAAGT+TGG 0.546093 6_1:-15357784 None:intergenic
TCCCTTGTACCAGTCAAGGT+TGG 0.546130 6_1:-15357424 None:intergenic
AAGCGAGAAGAGCGTGCTCA+CGG 0.547764 6_1:-15357110 None:intergenic
CAGTGGTGGAGTCAATGATA+AGG 0.548349 6_1:-15357050 None:intergenic
TATCCGTTTCCAATCTGACC+AGG 0.548901 6_1:-15357819 None:intergenic
CCAAAAGTCACAACCATACC+GGG 0.549217 6_1:-15357591 None:intergenic
GCTGAATCGAAATCTAGGGT+TGG 0.550049 6_1:-15355692 None:intergenic
CGGTATTGTGAAACCCGGTA+TGG 0.554074 6_1:+15357578 Msa0876850:CDS
TTCTTGAAGAATGGTGATGC+TGG 0.554703 6_1:+15357948 Msa0876850:CDS
AGTTTAAATAATCAAGTACA+TGG 0.554706 6_1:+15358551 Msa0876850:three_prime_UTR
ACTGGGTTCTTGATCGGCGA+TGG 0.555494 6_1:+15358265 Msa0876850:three_prime_UTR
ATCTTGCAATGGAAGCCTGA+GGG 0.556985 6_1:-15357505 None:intergenic
ACCAACCTTGACTGGTACAA+GGG 0.559612 6_1:+15357423 Msa0876850:CDS
GTAACCAACCTTCTTCAAGT+AGG 0.562921 6_1:-15357334 None:intergenic
GCAAAGGTCTCAACCACCAT+GGG 0.563446 6_1:-15357996 None:intergenic
ATCTGGTAAGGAGATTGAAA+AGG 0.563892 6_1:+15357917 Msa0876850:CDS
AGTTGGCAGCTTCCTTGGCA+GGG 0.564600 6_1:-15357767 None:intergenic
GGTGGTTCATGATGATGACT+TGG 0.569890 6_1:-15357797 None:intergenic
AACTTGTTACCAAGATCGAC+AGG 0.569913 6_1:+15357892 Msa0876850:CDS
AGCTTCAAAACCACCAGTGG+TGG 0.571917 6_1:-15357064 None:intergenic
TTGGTCCCTTGTACCAGTCA+AGG 0.575920 6_1:-15357428 None:intergenic
AGCGAGAAGAGCGTGCTCAC+GGG 0.577686 6_1:-15357109 None:intergenic
GACTGTGCAGTAGTACTTGG+TGG 0.578462 6_1:-15356956 None:intergenic
TGTTAAGAATGTTGCTGTGA+AGG 0.579878 6_1:+15357704 Msa0876850:CDS
CATGATTACTGGAACCTCCC+AGG 0.581850 6_1:+15357014 Msa0876850:CDS
CTCAGCTGAATCGAAATCTA+GGG 0.584632 6_1:-15355696 None:intergenic
TCAAGAGCCTCAAGGAGAGT+TGG 0.584894 6_1:-15357447 None:intergenic
AACTTCAGTTGTCAAACCAG+TGG 0.589445 6_1:-15357616 None:intergenic
AATGACTGTGCAGTAGTACT+TGG 0.591989 6_1:-15356959 None:intergenic
GAAGCTGGTATCTCTAAGGA+TGG 0.592030 6_1:+15357081 Msa0876850:CDS
CCAGTTGGACGTGTTGAGAC+CGG 0.592088 6_1:+15357558 Msa0876850:CDS
ATCTTGTAAACATCTTGCAA+TGG 0.592677 6_1:-15357516 None:intergenic
GAGGTGTGGCAATCGAGCAC+TGG 0.595189 6_1:-15357846 None:intergenic
TTTGCTGAATATCCTCCACT+TGG 0.598309 6_1:+15358014 Msa0876850:CDS
GAAGAAGTGATCTCCCTCCA+TGG 0.599917 6_1:+15358142 Msa0876850:exon
GTGGAGAAGAAGGATCCCAC+TGG 0.600566 6_1:+15358092 Msa0876850:CDS
AAGGACTGCACAATCAGCCT+GGG 0.602280 6_1:-15357031 None:intergenic
GGTCACTTGATCTACAAGCT+AGG 0.604596 6_1:+15356784 Msa0876850:CDS
TGTTGGTGTCATCAAGGCTG+TGG 0.608422 6_1:+15358073 Msa0876850:CDS
GATGGTTCCCACCAAGCCCA+TGG 0.611182 6_1:+15357980 Msa0876850:CDS
CATACCGGGTTTCACAATAC+CGG 0.612280 6_1:-15357577 None:intergenic
TTTCCACAAGGCAATATCGA+TGG 0.613258 6_1:-15356926 None:intergenic
GCGTTCATTCAAGTACGCAT+GGG 0.615188 6_1:+15356864 Msa0876850:CDS
ACTTCAGTTGTCAAACCAGT+GGG 0.615673 6_1:-15357615 None:intergenic
GAGTATACTACATTTGCAGT+AGG 0.616756 6_1:+15358616 Msa0876850:three_prime_UTR
AGCAAAGGTCTCAACCACCA+TGG 0.617611 6_1:-15357997 None:intergenic
CTCCAAGGATGACCCTGCCA+AGG 0.619064 6_1:+15357755 Msa0876850:CDS
TTTCGTTGCATCCAACTCCA+AGG 0.619372 6_1:+15357740 Msa0876850:CDS
AGTTGCTGTTGGTGTCATCA+AGG 0.621005 6_1:+15358067 Msa0876850:CDS
AAGGTGACAACATGATTGAG+AGG 0.624581 6_1:+15357397 Msa0876850:CDS
AACAACTTGTGAAGTAACCA+TGG 0.627034 6_1:-15358159 None:intergenic
TCTTGCAATGGAAGCCTGAG+GGG 0.631058 6_1:-15357504 None:intergenic
CCTAGATTTCGATTCAGCTG+AGG 0.633164 6_1:+15355697 Msa0876850:five_prime_UTR
TGATCTGGTCAAGAGCCTCA+AGG 0.634180 6_1:-15357455 None:intergenic
GATGATCTGTTGTTGTAACA+AGG 0.635291 6_1:+15357152 Msa0876850:CDS
TGATGCTGGTATCATTAAGA+TGG 0.636151 6_1:+15357962 Msa0876850:CDS
ACTTGTGAAGTAACCATGGA+GGG 0.638442 6_1:-15358155 None:intergenic
TGTGATCGAGAGATTCGAGA+AGG 0.638590 6_1:+15356822 Msa0876850:CDS
GACTGCACAATCAGCCTGGG+AGG 0.640106 6_1:-15357028 None:intergenic
CACTTGATCTACAAGCTAGG+AGG 0.645428 6_1:+15356787 Msa0876850:CDS
TTACCATCGATATTGCCTTG+TGG 0.647445 6_1:+15356923 Msa0876850:CDS
GGTATTGGAACTGTGCCAGT+TGG 0.649080 6_1:+15357543 Msa0876850:CDS
GTCATCATCATGAACCACCC+TGG 0.650188 6_1:+15357801 Msa0876850:CDS
GCTCTTCCAGGAGACAATGT+CGG 0.651488 6_1:+15357675 Msa0876850:CDS
AAACTTCACAGCAATGTGAG+AGG 0.653594 6_1:-15357865 None:intergenic
CATCTTGCAATGGAAGCCTG+AGG 0.654491 6_1:-15357506 None:intergenic
ACAGCAAAACGTCCAAGTGG+AGG 0.656142 6_1:-15358026 None:intergenic
ATGCGTCAAACAGTTGCTGT+TGG 0.665270 6_1:+15358056 Msa0876850:CDS
TCGGTACGATGAAATCGTGA+AGG 0.669066 6_1:+15357302 Msa0876850:CDS
ACCAGCTTCAAAACCACCAG+TGG 0.669846 6_1:-15357067 None:intergenic
TCACAGCAATGTGAGAGGTG+TGG 0.670228 6_1:-15357860 None:intergenic
AAGTGGAGGATATTCAGCAA+AGG 0.671437 6_1:-15358012 None:intergenic
CAAGGGACCAACTCTCCTTG+AGG 0.682171 6_1:+15357440 Msa0876850:CDS
CCGAGCCTTTGAGTACTTGG+GGG 0.683229 6_1:-15357283 None:intergenic
CTGACAGCAAAACGTCCAAG+TGG 0.686824 6_1:-15358029 None:intergenic
CGTTTCCAATCTGACCAGGG+TGG 0.687081 6_1:-15357815 None:intergenic
ATCCGTTTCCAATCTGACCA+GGG 0.688739 6_1:-15357818 None:intergenic
TATCTCTCATTCTCTCTCTG+CGG 0.689161 6_1:+15355659 Msa0876850:five_prime_UTR
GAGACCGGTATTGTGAAACC+CGG 0.689348 6_1:+15357573 Msa0876850:CDS
GTGGTTCATGATGATGACTT+GGG 0.690284 6_1:-15357796 None:intergenic
AACTTGTGAAGTAACCATGG+AGG 0.700696 6_1:-15358156 None:intergenic
GTCTGTTGAGATGCACCACG+AGG 0.705830 6_1:+15357641 Msa0876850:CDS
GCTGTGAAGGATCTCAAGCG+TGG 0.706441 6_1:+15357717 Msa0876850:CDS
GGTTCCCACCAAGCCCATGG+TGG 0.716413 6_1:+15357983 Msa0876850:CDS
GGTGGTCTCGAATTTCCACA+AGG 0.719757 6_1:-15356938 None:intergenic
GAGCTTCAGTGAGAGCCTCG+TGG 0.728674 6_1:-15357656 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGATTAAGTAATTTAATT+AGG + chr6_1:15356055-15356074 Msa0876850:intron 10.0%
!!! TTTATTGTTTTGATTGATTA+TGG + chr6_1:15356105-15356124 Msa0876850:intron 15.0%
!! AAGATAACAAACTATTAAAA+AGG - chr6_1:15358185-15358204 None:intergenic 15.0%
!! TTAACAATTAAAACCAAAAA+CGG - chr6_1:15358293-15358312 None:intergenic 15.0%
!!! ATCTATTTGATGATTTTGTT+CGG + chr6_1:15355795-15355814 Msa0876850:intron 20.0%
!! TATAATACTGTGATTGTAAT+TGG + chr6_1:15356137-15356156 Msa0876850:intron 20.0%
!! ATAATACTGTGATTGTAATT+GGG + chr6_1:15356138-15356157 Msa0876850:intron 20.0%
!! TTTCGTCTATATGATTAAAA+GGG + chr6_1:15356161-15356180 Msa0876850:intron 20.0%
!!! TCTGTTTTATTGATTACATT+TGG + chr6_1:15356327-15356346 Msa0876850:intron 20.0%
!!! CTGTTTTATTGATTACATTT+GGG + chr6_1:15356328-15356347 Msa0876850:intron 20.0%
!!! TGTTTTATTGATTACATTTG+GGG + chr6_1:15356329-15356348 Msa0876850:intron 20.0%
!! TTTCAATTATTTGTTTCAGA+TGG + chr6_1:15357251-15357270 Msa0876850:intron 20.0%
!! AATAACAAAAAACTAAGACA+CGG - chr6_1:15358210-15358229 None:intergenic 20.0%
!! TAAAACTGGAAAAATAAAAC+TGG - chr6_1:15358233-15358252 None:intergenic 20.0%
!!! AACCTTTTATTTTATCTCTA+TGG + chr6_1:15358416-15358435 Msa0876850:three_prime_UTR 20.0%
!! AACCATAGAGATAAAATAAA+AGG - chr6_1:15358421-15358440 None:intergenic 20.0%
!! AGTTTAAATAATCAAGTACA+TGG + chr6_1:15358551-15358570 Msa0876850:three_prime_UTR 20.0%
! GTTTCGTCTATATGATTAAA+AGG + chr6_1:15356160-15356179 Msa0876850:intron 25.0%
! GGTTTATGATTGTTCATAAT+AGG + chr6_1:15356242-15356261 Msa0876850:intron 25.0%
! TACTCTTATGTTATTGGATT+TGG + chr6_1:15356355-15356374 Msa0876850:intron 25.0%
! TAATTATTGATAAGCTGAGT+TGG + chr6_1:15356422-15356441 Msa0876850:intron 25.0%
! TACACAATGAATTAGTTGTT+TGG + chr6_1:15356485-15356504 Msa0876850:intron 25.0%
!!! TTTTAGAAACTTACAGAACT+GGG + chr6_1:15358248-15358267 Msa0876850:three_prime_UTR 25.0%
!! ATAGTTACTGCAATTTTTCT+TGG + chr6_1:15358492-15358511 Msa0876850:three_prime_UTR 25.0%
!! TAGTTACTGCAATTTTTCTT+GGG + chr6_1:15358493-15358512 Msa0876850:three_prime_UTR 25.0%
! TAGTATACTCACTAATCATT+TGG - chr6_1:15358606-15358625 None:intergenic 25.0%
TCGATTTATGCTTGTAATCT+TGG + chr6_1:15355882-15355901 Msa0876850:intron 30.0%
CTATCATTTCAGACAAGAAT+CGG - chr6_1:15356022-15356041 None:intergenic 30.0%
TGTATCTAATAACAAGTGTC+TGG + chr6_1:15356209-15356228 Msa0876850:intron 30.0%
GGGTATTACTCTTATGTTAT+TGG + chr6_1:15356349-15356368 Msa0876850:intron 30.0%
!!! ATTGCAGTTTTAAGACAACA+TGG + chr6_1:15356693-15356712 Msa0876850:intron 30.0%
!!! TTGCAGTTTTAAGACAACAT+GGG + chr6_1:15356694-15356713 Msa0876850:intron 30.0%
TTCATCAAGAACATGATTAC+TGG + chr6_1:15357003-15357022 Msa0876850:CDS 30.0%
TGAGTTACATATTCTGACTT+TGG + chr6_1:15357228-15357247 Msa0876850:intron 30.0%
ATCTTGTAAACATCTTGCAA+TGG - chr6_1:15357519-15357538 None:intergenic 30.0%
TTGCAAGATGTTTACAAGAT+TGG + chr6_1:15357519-15357538 Msa0876850:CDS 30.0%
!! GTTCTGTAAGTTTCTAAAAC+TGG - chr6_1:15358247-15358266 None:intergenic 30.0%
!!! GTTTTAGAAACTTACAGAAC+TGG + chr6_1:15358247-15358266 Msa0876850:three_prime_UTR 30.0%
TAAGAGTCTTGAGTTTCAAA+AGG + chr6_1:15358310-15358329 Msa0876850:three_prime_UTR 30.0%
ATATTGTCCTTGATTGTTTG+TGG + chr6_1:15358451-15358470 Msa0876850:three_prime_UTR 30.0%
!!! GTCTTTATGCATTTGTTTTG+AGG + chr6_1:15358522-15358541 Msa0876850:three_prime_UTR 30.0%
AAGAAACGAGAATCAGAGAT+TGG - chr6_1:15355728-15355747 None:intergenic 35.0%
! CAAGTGTCTGGTTTATGATT+TGG + chr6_1:15356221-15356240 Msa0876850:intron 35.0%
TGGTTTGATTAGATCTTGTG+TGG + chr6_1:15356375-15356394 Msa0876850:intron 35.0%
TATGACTTGAAACTGAAGTG+TGG + chr6_1:15356556-15356575 Msa0876850:intron 35.0%
CATATCAACATTGTCGTCAT+TGG + chr6_1:15356730-15356749 Msa0876850:CDS 35.0%
TCTGGAAAATCAACAACAAC+TGG + chr6_1:15356763-15356782 Msa0876850:CDS 35.0%
!!! TTTTGAAGCTGGTATCTCTA+AGG + chr6_1:15357077-15357096 Msa0876850:CDS 35.0%
GATGATCTGTTGTTGTAACA+AGG + chr6_1:15357152-15357171 Msa0876850:CDS 35.0%
AGTTTCATCCTACTTGAAGA+AGG + chr6_1:15357326-15357345 Msa0876850:CDS 35.0%
CAAGATGTTTACAAGATTGG+TGG + chr6_1:15357522-15357541 Msa0876850:CDS 35.0%
! GTTTACAAGATTGGTGGTAT+TGG + chr6_1:15357528-15357547 Msa0876850:CDS 35.0%
TGTTAAGAATGTTGCTGTGA+AGG + chr6_1:15357704-15357723 Msa0876850:CDS 35.0%
ATCTGGTAAGGAGATTGAAA+AGG + chr6_1:15357917-15357936 Msa0876850:CDS 35.0%
TCACCATTCTTCAAGAACTT+GGG - chr6_1:15357945-15357964 None:intergenic 35.0%
ATCACCATTCTTCAAGAACT+TGG - chr6_1:15357946-15357965 None:intergenic 35.0%
TGATGCTGGTATCATTAAGA+TGG + chr6_1:15357962-15357981 Msa0876850:CDS 35.0%
AACAACTTGTGAAGTAACCA+TGG - chr6_1:15358162-15358181 None:intergenic 35.0%
AGTTTCAAAAGGCAGCTAAA+AGG + chr6_1:15358321-15358340 Msa0876850:three_prime_UTR 35.0%
! ACATCTTAATTTTGCTGCTG+AGG + chr6_1:15358348-15358367 Msa0876850:three_prime_UTR 35.0%
GAGTATACTACATTTGCAGT+AGG + chr6_1:15358616-15358635 Msa0876850:three_prime_UTR 35.0%
TATCTCTCATTCTCTCTCTG+CGG + chr6_1:15355659-15355678 Msa0876850:five_prime_UTR 40.0%
! CTGAATCGAAATCTAGGGTT+GGG - chr6_1:15355694-15355713 None:intergenic 40.0%
CTCAGCTGAATCGAAATCTA+GGG - chr6_1:15355699-15355718 None:intergenic 40.0%
ATGGGTTCTTGACAAGCTTA+AGG + chr6_1:15356882-15356901 Msa0876850:CDS 40.0%
TTACCATCGATATTGCCTTG+TGG + chr6_1:15356923-15356942 Msa0876850:CDS 40.0%
TTTCCACAAGGCAATATCGA+TGG - chr6_1:15356929-15356948 None:intergenic 40.0%
AATGACTGTGCAGTAGTACT+TGG - chr6_1:15356962-15356981 None:intergenic 40.0%
TTGATGAAATCACGATGTCC+TGG - chr6_1:15356991-15357010 None:intergenic 40.0%
TCATCCTACTTGAAGAAGGT+TGG + chr6_1:15357330-15357349 Msa0876850:CDS 40.0%
GTAACCAACCTTCTTCAAGT+AGG - chr6_1:15357337-15357356 None:intergenic 40.0%
! GAACGAATGGGATTTTGTCT+GGG - chr6_1:15357362-15357381 None:intergenic 40.0%
CATGTTGTCACCTTCAAAAC+CGG - chr6_1:15357391-15357410 None:intergenic 40.0%
AAGGTGACAACATGATTGAG+AGG + chr6_1:15357397-15357416 Msa0876850:CDS 40.0%
TCCAAAAGTCACAACCATAC+CGG - chr6_1:15357595-15357614 None:intergenic 40.0%
ACTTCAGTTGTCAAACCAGT+GGG - chr6_1:15357618-15357637 None:intergenic 40.0%
AACTTCAGTTGTCAAACCAG+TGG - chr6_1:15357619-15357638 None:intergenic 40.0%
! GTGGTTCATGATGATGACTT+GGG - chr6_1:15357799-15357818 None:intergenic 40.0%
AAACTTCACAGCAATGTGAG+AGG - chr6_1:15357868-15357887 None:intergenic 40.0%
!! AACTTGTTACCAAGATCGAC+AGG + chr6_1:15357892-15357911 Msa0876850:CDS 40.0%
! TTCTTGAAGAATGGTGATGC+TGG + chr6_1:15357948-15357967 Msa0876850:CDS 40.0%
AAGTGGAGGATATTCAGCAA+AGG - chr6_1:15358015-15358034 None:intergenic 40.0%
TTTGCTGAATATCCTCCACT+TGG + chr6_1:15358014-15358033 Msa0876850:CDS 40.0%
ACTTGTGAAGTAACCATGGA+GGG - chr6_1:15358158-15358177 None:intergenic 40.0%
AACTTGTGAAGTAACCATGG+AGG - chr6_1:15358159-15358178 None:intergenic 40.0%
TACAGAACTGGGTTCTTGAT+CGG + chr6_1:15358259-15358278 Msa0876850:three_prime_UTR 40.0%
! GCTGAATCGAAATCTAGGGT+TGG - chr6_1:15355695-15355714 None:intergenic 45.0%
CCTCAGCTGAATCGAAATCT+AGG - chr6_1:15355700-15355719 None:intergenic 45.0%
CCTAGATTTCGATTCAGCTG+AGG + chr6_1:15355697-15355716 Msa0876850:five_prime_UTR 45.0%
GGTCACTTGATCTACAAGCT+AGG + chr6_1:15356784-15356803 Msa0876850:CDS 45.0%
CACTTGATCTACAAGCTAGG+AGG + chr6_1:15356787-15356806 Msa0876850:CDS 45.0%
TGTGATCGAGAGATTCGAGA+AGG + chr6_1:15356822-15356841 Msa0876850:CDS 45.0%
AGCGTTCATTCAAGTACGCA+TGG + chr6_1:15356863-15356882 Msa0876850:CDS 45.0%
GCGTTCATTCAAGTACGCAT+GGG + chr6_1:15356864-15356883 Msa0876850:CDS 45.0%
! CAGTGGTGGAGTCAATGATA+AGG - chr6_1:15357053-15357072 None:intergenic 45.0%
!! CTTATCATTGACTCCACCAC+TGG + chr6_1:15357051-15357070 Msa0876850:CDS 45.0%
! GAAGCTGGTATCTCTAAGGA+TGG + chr6_1:15357081-15357100 Msa0876850:CDS 45.0%
!! GCTCTTCTCGCTTTTACTCT+TGG + chr6_1:15357120-15357139 Msa0876850:CDS 45.0%
TACCGAGCCTTTGAGTACTT+GGG - chr6_1:15357288-15357307 None:intergenic 45.0%
TCGGTACGATGAAATCGTGA+AGG + chr6_1:15357302-15357321 Msa0876850:CDS 45.0%
! GGAACGAATGGGATTTTGTC+TGG - chr6_1:15357363-15357382 None:intergenic 45.0%
ATCCCATTCGTTCCAATCTC+CGG + chr6_1:15357369-15357388 Msa0876850:CDS 45.0%
AACCGGAGATTGGAACGAAT+GGG - chr6_1:15357374-15357393 None:intergenic 45.0%
AAACCGGAGATTGGAACGAA+TGG - chr6_1:15357375-15357394 None:intergenic 45.0%
!! GTTCCAATCTCCGGTTTTGA+AGG + chr6_1:15357378-15357397 Msa0876850:CDS 45.0%
TCACCTTCAAAACCGGAGAT+TGG - chr6_1:15357384-15357403 None:intergenic 45.0%
ACCAACCTTGACTGGTACAA+GGG + chr6_1:15357423-15357442 Msa0876850:CDS 45.0%
ATCTTGCAATGGAAGCCTGA+GGG - chr6_1:15357508-15357527 None:intergenic 45.0%
CATACCGGGTTTCACAATAC+CGG - chr6_1:15357580-15357599 None:intergenic 45.0%
CCAAAAGTCACAACCATACC+GGG - chr6_1:15357594-15357613 None:intergenic 45.0%
TTGAATCCGACATTGTCTCC+TGG - chr6_1:15357684-15357703 None:intergenic 45.0%
TTTCGTTGCATCCAACTCCA+AGG + chr6_1:15357740-15357759 Msa0876850:CDS 45.0%
! GATGACTTGGGAAGTGAAGT+TGG - chr6_1:15357787-15357806 None:intergenic 45.0%
! GGTGGTTCATGATGATGACT+TGG - chr6_1:15357800-15357819 None:intergenic 45.0%
ATCCGTTTCCAATCTGACCA+GGG - chr6_1:15357821-15357840 None:intergenic 45.0%
TATCCGTTTCCAATCTGACC+AGG - chr6_1:15357822-15357841 None:intergenic 45.0%
GAGCCCAAGTTCTTGAAGAA+TGG + chr6_1:15357939-15357958 Msa0876850:CDS 45.0%
ATGCGTCAAACAGTTGCTGT+TGG + chr6_1:15358056-15358075 Msa0876850:CDS 45.0%
!! AGTTGCTGTTGGTGTCATCA+AGG + chr6_1:15358067-15358086 Msa0876850:CDS 45.0%
CTCAGCACCACAAACAATCA+AGG - chr6_1:15358461-15358480 None:intergenic 45.0%
!! GTCATTGGACATGTCGACTC+TGG + chr6_1:15356745-15356764 Msa0876850:CDS 50.0%
CTTAAGGCTGAGCGTGAAAG+AGG + chr6_1:15356898-15356917 Msa0876850:CDS 50.0%
GGTGGTCTCGAATTTCCACA+AGG - chr6_1:15356941-15356960 None:intergenic 50.0%
GACTGTGCAGTAGTACTTGG+TGG - chr6_1:15356959-15356978 None:intergenic 50.0%
TGCACAGTCATTGATGCTCC+AGG + chr6_1:15356970-15356989 Msa0876850:CDS 50.0%
CATGATTACTGGAACCTCCC+AGG + chr6_1:15357014-15357033 Msa0876850:CDS 50.0%
AAGGACTGCACAATCAGCCT+GGG - chr6_1:15357034-15357053 None:intergenic 50.0%
TAAGGACTGCACAATCAGCC+TGG - chr6_1:15357035-15357054 None:intergenic 50.0%
!! ATCATTGACTCCACCACTGG+TGG + chr6_1:15357054-15357073 Msa0876850:CDS 50.0%
AGCTTCAAAACCACCAGTGG+TGG - chr6_1:15357067-15357086 None:intergenic 50.0%
!!! ACCACTGGTGGTTTTGAAGC+TGG + chr6_1:15357066-15357085 Msa0876850:CDS 50.0%
ACCAGCTTCAAAACCACCAG+TGG - chr6_1:15357070-15357089 None:intergenic 50.0%
TACCACCCCCAAGTACTCAA+AGG + chr6_1:15357278-15357297 Msa0876850:CDS 50.0%
ACCGAGCCTTTGAGTACTTG+GGG - chr6_1:15357287-15357306 None:intergenic 50.0%
GTACCGAGCCTTTGAGTACT+TGG - chr6_1:15357289-15357308 None:intergenic 50.0%
CTTGTACCAGTCAAGGTTGG+TGG - chr6_1:15357424-15357443 None:intergenic 50.0%
CACCAACCTTGACTGGTACA+AGG + chr6_1:15357422-15357441 Msa0876850:CDS 50.0%
TCCCTTGTACCAGTCAAGGT+TGG - chr6_1:15357427-15357446 None:intergenic 50.0%
TTGGTCCCTTGTACCAGTCA+AGG - chr6_1:15357431-15357450 None:intergenic 50.0%
TCAAGAGCCTCAAGGAGAGT+TGG - chr6_1:15357450-15357469 None:intergenic 50.0%
TGATCTGGTCAAGAGCCTCA+AGG - chr6_1:15357458-15357477 None:intergenic 50.0%
TCTTGCAATGGAAGCCTGAG+GGG - chr6_1:15357507-15357526 None:intergenic 50.0%
CATCTTGCAATGGAAGCCTG+AGG - chr6_1:15357509-15357528 None:intergenic 50.0%
! GGTATTGGAACTGTGCCAGT+TGG + chr6_1:15357543-15357562 Msa0876850:CDS 50.0%
GAGACCGGTATTGTGAAACC+CGG + chr6_1:15357573-15357592 Msa0876850:CDS 50.0%
CGGTATTGTGAAACCCGGTA+TGG + chr6_1:15357578-15357597 Msa0876850:CDS 50.0%
! CCCGGTATGGTTGTGACTTT+TGG + chr6_1:15357591-15357610 Msa0876850:CDS 50.0%
! GTTGTGACTTTTGGACCCAC+TGG + chr6_1:15357600-15357619 Msa0876850:CDS 50.0%
GCTCTTCCAGGAGACAATGT+CGG + chr6_1:15357675-15357694 Msa0876850:CDS 50.0%
AGTGAAGTTGGCAGCTTCCT+TGG - chr6_1:15357775-15357794 None:intergenic 50.0%
GTCATCATCATGAACCACCC+TGG + chr6_1:15357801-15357820 Msa0876850:CDS 50.0%
ATGAACCACCCTGGTCAGAT+TGG + chr6_1:15357810-15357829 Msa0876850:CDS 50.0%
CACCCTGGTCAGATTGGAAA+CGG + chr6_1:15357816-15357835 Msa0876850:CDS 50.0%
TCACAGCAATGTGAGAGGTG+TGG - chr6_1:15357863-15357882 None:intergenic 50.0%
GCAAAGGTCTCAACCACCAT+GGG - chr6_1:15357999-15358018 None:intergenic 50.0%
AGCAAAGGTCTCAACCACCA+TGG - chr6_1:15358000-15358019 None:intergenic 50.0%
ACAGCAAAACGTCCAAGTGG+AGG - chr6_1:15358029-15358048 None:intergenic 50.0%
CTGACAGCAAAACGTCCAAG+TGG - chr6_1:15358032-15358051 None:intergenic 50.0%
!! TGTTGGTGTCATCAAGGCTG+TGG + chr6_1:15358073-15358092 Msa0876850:CDS 50.0%
CATCAAGGCTGTGGAGAAGA+AGG + chr6_1:15358082-15358101 Msa0876850:CDS 50.0%
! TTGGTGACTTTGGCTCCAGT+GGG - chr6_1:15358110-15358129 None:intergenic 50.0%
! TTTGGTGACTTTGGCTCCAG+TGG - chr6_1:15358111-15358130 None:intergenic 50.0%
CTTCTTCTTGGCAGCAGCTT+TGG - chr6_1:15358129-15358148 None:intergenic 50.0%
GGAGGGAGATCACTTCTTCT+TGG - chr6_1:15358141-15358160 None:intergenic 50.0%
GAAGAAGTGATCTCCCTCCA+TGG + chr6_1:15358142-15358161 Msa0876850:exon 50.0%
! ATCGGCGATGGTACCGTTTT+TGG + chr6_1:15358277-15358296 Msa0876850:three_prime_UTR 50.0%
! AAGCGAGAAGAGCGTGCTCA+CGG - chr6_1:15357113-15357132 None:intergenic 55.0%
AGCCTTTGAGTACTTGGGGG+TGG - chr6_1:15357283-15357302 None:intergenic 55.0%
CCGAGCCTTTGAGTACTTGG+GGG - chr6_1:15357286-15357305 None:intergenic 55.0%
CCCCCAAGTACTCAAAGGCT+CGG + chr6_1:15357283-15357302 Msa0876850:CDS 55.0%
AGAGGTCCACCAACCTTGAC+TGG + chr6_1:15357415-15357434 Msa0876850:CDS 55.0%
CAAGGGACCAACTCTCCTTG+AGG + chr6_1:15357440-15357459 Msa0876850:CDS 55.0%
GTCTCTTGGGCTCGTTGATC+TGG - chr6_1:15357473-15357492 None:intergenic 55.0%
GGCTTGTCTGTGGGTCTCTT+GGG - chr6_1:15357486-15357505 None:intergenic 55.0%
CCAGTTGGACGTGTTGAGAC+CGG + chr6_1:15357558-15357577 Msa0876850:CDS 55.0%
GTCTGTTGAGATGCACCACG+AGG + chr6_1:15357641-15357660 Msa0876850:CDS 55.0%
GCTCTCACTGAAGCTCTTCC+AGG + chr6_1:15357663-15357682 Msa0876850:CDS 55.0%
GCTGTGAAGGATCTCAAGCG+TGG + chr6_1:15357717-15357736 Msa0876850:CDS 55.0%
TTCCTTGGCAGGGTCATCCT+TGG - chr6_1:15357760-15357779 None:intergenic 55.0%
AGTTGGCAGCTTCCTTGGCA+GGG - chr6_1:15357770-15357789 None:intergenic 55.0%
AAGTTGGCAGCTTCCTTGGC+AGG - chr6_1:15357771-15357790 None:intergenic 55.0%
CGTTTCCAATCTGACCAGGG+TGG - chr6_1:15357818-15357837 None:intergenic 55.0%
ACCAAGATCGACAGGCGATC+TGG + chr6_1:15357900-15357919 Msa0876850:CDS 55.0%
ACCAGATCGCCTGTCGATCT+TGG - chr6_1:15357904-15357923 None:intergenic 55.0%
GATCGACAGGCGATCTGGTA+AGG + chr6_1:15357905-15357924 Msa0876850:CDS 55.0%
! TCAACCACCATGGGCTTGGT+GGG - chr6_1:15357990-15358009 None:intergenic 55.0%
GTGGAGAAGAAGGATCCCAC+TGG + chr6_1:15358092-15358111 Msa0876850:CDS 55.0%
! GGCAGCAGCTTTGGTGACTT+TGG - chr6_1:15358120-15358139 None:intergenic 55.0%
ACTGGGTTCTTGATCGGCGA+TGG + chr6_1:15358265-15358284 Msa0876850:three_prime_UTR 55.0%
GACTGCACAATCAGCCTGGG+AGG - chr6_1:15357031-15357050 None:intergenic 60.0%
! AGCGAGAAGAGCGTGCTCAC+GGG - chr6_1:15357112-15357131 None:intergenic 60.0%
GGGCTTGTCTGTGGGTCTCT+TGG - chr6_1:15357487-15357506 None:intergenic 60.0%
AGCCTGAGGGGCTTGTCTGT+GGG - chr6_1:15357495-15357514 None:intergenic 60.0%
AAGCCTGAGGGGCTTGTCTG+TGG - chr6_1:15357496-15357515 None:intergenic 60.0%
CCGGTCTCAACACGTCCAAC+TGG - chr6_1:15357561-15357580 None:intergenic 60.0%
GAGCTTCAGTGAGAGCCTCG+TGG - chr6_1:15357659-15357678 None:intergenic 60.0%
GGCAGGGTCATCCTTGGAGT+TGG - chr6_1:15357754-15357773 None:intergenic 60.0%
CTCCAAGGATGACCCTGCCA+AGG + chr6_1:15357755-15357774 Msa0876850:CDS 60.0%
GAGGTGTGGCAATCGAGCAC+TGG - chr6_1:15357849-15357868 None:intergenic 60.0%
GATGGTTCCCACCAAGCCCA+TGG + chr6_1:15357980-15357999 Msa0876850:CDS 60.0%
CTCAACCACCATGGGCTTGG+TGG - chr6_1:15357991-15358010 None:intergenic 60.0%
GGTCTCAACCACCATGGGCT+TGG - chr6_1:15357994-15358013 None:intergenic 60.0%
GACCCACAGACAAGCCCCTC+AGG + chr6_1:15357490-15357509 Msa0876850:CDS 65.0%
GGTTCCCACCAAGCCCATGG+TGG + chr6_1:15357983-15358002 Msa0876850:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 15355632 15358647 15355632 ID=Msa0876850;Name=Msa0876850
chr6_1 mRNA 15355632 15358647 15355632 ID=Msa0876850-mRNA-1;Parent=Msa0876850;Name=Msa0876850-mRNA-1;_AED=0.03;_eAED=0.03;_QI=99|1|1|1|0.5|0.33|3|496|447
chr6_1 exon 15355632 15355718 15355632 ID=Msa0876850-mRNA-1:exon:4436;Parent=Msa0876850-mRNA-1
chr6_1 exon 15356700 15357173 15356700 ID=Msa0876850-mRNA-1:exon:4437;Parent=Msa0876850-mRNA-1
chr6_1 exon 15357270 15358647 15357270 ID=Msa0876850-mRNA-1:exon:4438;Parent=Msa0876850-mRNA-1
chr6_1 five_prime_UTR 15355632 15355718 15355632 ID=Msa0876850-mRNA-1:five_prime_utr;Parent=Msa0876850-mRNA-1
chr6_1 five_prime_UTR 15356700 15356711 15356700 ID=Msa0876850-mRNA-1:five_prime_utr;Parent=Msa0876850-mRNA-1
chr6_1 CDS 15356712 15357173 15356712 ID=Msa0876850-mRNA-1:cds;Parent=Msa0876850-mRNA-1
chr6_1 CDS 15357270 15358151 15357270 ID=Msa0876850-mRNA-1:cds;Parent=Msa0876850-mRNA-1
chr6_1 three_prime_UTR 15358152 15358647 15358152 ID=Msa0876850-mRNA-1:three_prime_utr;Parent=Msa0876850-mRNA-1
Gene Sequence

>Msa0876850

ATGGGAAAAGAAAAGATTCATATCAACATTGTCGTCATTGGACATGTCGACTCTGGAAAATCAACAACAACTGGTCACTTGATCTACAAGCTAGGAGGTATTGACAAGCGTGTGATCGAGAGATTCGAGAAGGAAGCTGCTGAAATGAACAAGCGTTCATTCAAGTACGCATGGGTTCTTGACAAGCTTAAGGCTGAGCGTGAAAGAGGAATTACCATCGATATTGCCTTGTGGAAATTCGAGACCACCAAGTACTACTGCACAGTCATTGATGCTCCAGGACATCGTGATTTCATCAAGAACATGATTACTGGAACCTCCCAGGCTGATTGTGCAGTCCTTATCATTGACTCCACCACTGGTGGTTTTGAAGCTGGTATCTCTAAGGATGGACAGACCCGTGAGCACGCTCTTCTCGCTTTTACTCTTGGAGTGAAGCAGATGATCTGTTGTTGTAACAAGATGGATGCTACCACCCCCAAGTACTCAAAGGCTCGGTACGATGAAATCGTGAAGGAAGTTTCATCCTACTTGAAGAAGGTTGGTTACAACCCAGACAAAATCCCATTCGTTCCAATCTCCGGTTTTGAAGGTGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGACCAACTCTCCTTGAGGCTCTTGACCAGATCAACGAGCCCAAGAGACCCACAGACAAGCCCCTCAGGCTTCCATTGCAAGATGTTTACAAGATTGGTGGTATTGGAACTGTGCCAGTTGGACGTGTTGAGACCGGTATTGTGAAACCCGGTATGGTTGTGACTTTTGGACCCACTGGTTTGACAACTGAAGTTAAGTCTGTTGAGATGCACCACGAGGCTCTCACTGAAGCTCTTCCAGGAGACAATGTCGGATTCAATGTTAAGAATGTTGCTGTGAAGGATCTCAAGCGTGGTTTCGTTGCATCCAACTCCAAGGATGACCCTGCCAAGGAAGCTGCCAACTTCACTTCCCAAGTCATCATCATGAACCACCCTGGTCAGATTGGAAACGGATATGCACCAGTGCTCGATTGCCACACCTCTCACATTGCTGTGAAGTTTGCTGAACTTGTTACCAAGATCGACAGGCGATCTGGTAAGGAGATTGAAAAGGAGCCCAAGTTCTTGAAGAATGGTGATGCTGGTATCATTAAGATGGTTCCCACCAAGCCCATGGTGGTTGAGACCTTTGCTGAATATCCTCCACTTGGACGTTTTGCTGTCAGAGACATGCGTCAAACAGTTGCTGTTGGTGTCATCAAGGCTGTGGAGAAGAAGGATCCCACTGGAGCCAAAGTCACCAAAGCTGCTGCCAAGAAGAAGTGA

Protein sequence

>Msa0876850

MGKEKIHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGIVKPGMVVTFGPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGIIKMVPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPTGAKVTKAAAKKK*