AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0578970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0578970 MtrunA17_Chr4g0043591 94.863 292 13 1 1 292 1 290 0.0 548
Msa0578970 MtrunA17_Chr1g0189751 30.319 188 110 2 124 292 80 265 4.56e-27 107
Msa0578970 MtrunA17_Chr1g0189671 30.457 197 107 6 124 293 80 273 6.11e-27 106
Msa0578970 MtrunA17_Chr1g0189721 28.365 208 125 4 104 292 63 265 3.61e-26 103
Msa0578970 MtrunA17_Chr1g0189591 25.623 281 155 5 64 292 28 306 2.00e-24 100
Msa0578970 MtrunA17_Chr1g0189821 28.877 187 114 2 124 293 83 267 2.39e-23 96.7
Msa0578970 MtrunA17_Chr7g0272101 29.237 236 146 6 72 292 28 257 3.78e-23 95.9
Msa0578970 MtrunA17_Chr1g0189611 30.159 189 106 7 124 292 83 265 1.65e-21 91.3
Msa0578970 MtrunA17_Chr1g0189621 25.000 256 164 6 57 292 17 264 4.05e-21 90.5
Msa0578970 MtrunA17_Chr4g0010881 28.571 203 132 4 93 292 45 237 4.18e-21 89.7
Msa0578970 MtrunA17_Chr7g0272091 29.572 257 138 10 74 292 32 283 1.56e-20 89.0
Msa0578970 MtrunA17_Chr1g0189571 28.365 208 100 6 130 292 2 205 1.44e-19 84.7
Msa0578970 MtrunA17_Chr1g0189541 28.718 195 110 8 116 292 1 184 1.82e-18 81.3
Msa0578970 MtrunA17_Chr1g0190071 26.577 222 125 6 104 293 67 282 1.97e-18 83.2
Msa0578970 MtrunA17_Chr1g0192371 26.923 260 144 8 71 292 30 281 5.89e-18 82.0
Msa0578970 MtrunA17_Chr1g0203331 25.641 234 141 4 73 275 13 244 6.12e-18 81.3
Msa0578970 MtrunA17_Chr1g0189781 24.082 245 158 5 73 292 32 273 3.89e-17 79.3
Msa0578970 MtrunA17_Chr1g0203281 25.301 249 153 7 73 292 28 272 8.28e-17 78.6
Msa0578970 MtrunA17_Chr1g0189641 26.531 196 115 3 124 292 80 273 8.73e-17 78.6
Msa0578970 MtrunA17_Chr7g0260801 28.191 188 111 5 124 293 94 275 6.80e-14 70.5
Msa0578970 MtrunA17_Chr7g0265551 25.726 241 143 9 82 293 124 357 2.90e-13 69.3
Msa0578970 MtrunA17_Chr1g0157451 27.835 194 102 8 135 293 94 284 2.54e-12 66.2
Msa0578970 MtrunA17_Chr8g0350401 26.222 225 138 8 87 289 60 278 3.02e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0578970 AT4G19840.1 52.451 204 90 5 94 293 46 246 6.00e-70 217
Msa0578970 AT4G19850.3 47.143 210 96 7 94 292 13 218 7.75e-57 182
Msa0578970 AT4G19850.1 49.383 162 77 3 136 292 15 176 2.25e-50 164
Msa0578970 AT4G19850.2 46.774 186 84 7 94 268 13 194 1.01e-45 154
Msa0578970 AT1G33920.1 44.079 152 81 3 145 292 13 164 1.65e-42 144
Msa0578970 AT1G65390.1 40.361 166 93 4 132 292 246 410 1.60e-37 137
Msa0578970 AT2G02240.1 28.472 288 173 8 28 291 38 316 6.26e-27 107
Msa0578970 AT5G45090.1 34.568 162 100 4 136 291 169 330 3.49e-25 103
Msa0578970 AT5G45090.2 32.948 173 110 4 125 291 136 308 4.27e-25 102
Msa0578970 AT2G02360.1 31.707 246 139 9 66 291 32 268 6.18e-24 98.6
Msa0578970 AT2G02250.1 27.719 285 172 12 31 291 29 303 1.26e-22 95.9
Msa0578970 AT5G45080.1 33.333 153 96 3 145 291 238 390 7.16e-22 94.7
Msa0578970 AT1G80110.1 31.527 203 120 4 106 291 55 255 9.40e-22 92.4
Msa0578970 AT2G26820.1 31.818 154 98 3 145 291 308 461 1.19e-20 92.0
Msa0578970 AT2G26820.3 31.818 154 98 3 145 291 324 477 1.24e-20 92.0
Msa0578970 AT2G02340.1 26.296 270 150 10 53 291 50 301 2.16e-19 86.7
Msa0578970 AT5G45070.1 33.133 166 103 6 135 293 190 354 1.40e-18 85.1
Msa0578970 AT2G02230.1 32.484 157 90 4 54 209 47 188 1.92e-17 81.6
Msa0578970 AT5G24560.1 24.380 242 117 8 53 293 17 193 5.60e-16 75.1
Msa0578970 AT1G09155.1 24.904 261 155 7 71 292 22 280 6.53e-15 73.9
Msa0578970 AT2G02320.1 26.877 253 154 10 62 291 54 298 6.55e-15 73.9
Msa0578970 AT2G02310.1 26.877 253 155 7 64 293 60 305 4.46e-13 68.9
Msa0578970 AT1G56250.1 25.941 239 136 7 93 292 45 281 1.83e-12 66.6
Msa0578970 AT3G53000.1 27.119 236 141 9 82 291 54 284 2.67e-12 66.6

Find 76 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTATTTATTTATTATAAA+TGG 0.169759 4_1:-83657845 None:intergenic
TGTATCCATTTCCAATAATT+TGG 0.178400 4_1:-83657011 None:intergenic
TGATCGTAATTCTTCCTTAT+TGG 0.201571 4_1:-83656458 None:intergenic
AACGTTGTTTGTAGAAATAT+TGG 0.268294 4_1:+83656916 Msa0578970:intron
AGAATAATAATAATAGAAAA+TGG 0.302031 4_1:-83658030 None:intergenic
GGGCAGAAGATCCAAATTAT+TGG 0.313201 4_1:+83657000 Msa0578970:CDS
GCAACACAAGGAAAATTTAA+TGG 0.313866 4_1:+83657621 Msa0578970:CDS
AATGTTCGACTTGTCCTTCC+AGG 0.347328 4_1:+83657586 Msa0578970:CDS
AAGATCCAAATTATTGGAAA+TGG 0.355234 4_1:+83657006 Msa0578970:CDS
ACAAAATGAACCAACCAATA+AGG 0.364806 4_1:+83656444 Msa0578970:CDS
TCCCTTGAAGATTTATCAAC+CGG 0.377577 4_1:-83656664 None:intergenic
GTGTGTTGGTTAGAAGTTCA+TGG 0.382382 4_1:+83657466 Msa0578970:CDS
GAAACTTGATATAAAATTCC+TGG 0.384782 4_1:-83657514 None:intergenic
TTACACAAACAGACTCTTCA+TGG 0.398448 4_1:-83657887 None:intergenic
TGTTGCTGCTTCTTTCCTCC+TGG 0.398539 4_1:-83657604 None:intergenic
GGTTGCTGATTGAGTCTCAT+TGG 0.400764 4_1:-83656575 None:intergenic
AGCTCAGGGTTGGGAACTTC+CGG 0.410700 4_1:+83657561 Msa0578970:CDS
CAACATGAAACAGTTGGCTT+TGG 0.410721 4_1:-83656952 None:intergenic
ATATAGCATATGAAGTGAAA+TGG 0.426540 4_1:+83656327 Msa0578970:exon
TAGTTCTTTGATCAAAGGTT+TGG 0.427713 4_1:-83656596 None:intergenic
GAGTTTATGAAATTTATAAG+AGG 0.443386 4_1:-83657961 None:intergenic
CGTAATTCTTCCTTATTGGT+TGG 0.455287 4_1:-83656454 None:intergenic
TCATACAATATATAATATGT+TGG 0.455808 4_1:-83658002 None:intergenic
GATGCTACAAACTCACCAAC+TGG 0.464067 4_1:-83657673 None:intergenic
ACGTTGTTTGTAGAAATATT+GGG 0.469595 4_1:+83656917 Msa0578970:intron
GTTTGTTGTGGCTGTGATTG+TGG 0.475397 4_1:-83656379 None:intergenic
AAAAGATCCAGCTCAGGGTT+GGG 0.476440 4_1:+83657552 Msa0578970:CDS
TATAGCATATGAAGTGAAAT+GGG 0.476453 4_1:+83656328 Msa0578970:exon
TGCATACAACATGAAACAGT+TGG 0.479048 4_1:-83656958 None:intergenic
GCTGCTTCTTTCCTCCTGGA+AGG 0.481544 4_1:-83657600 None:intergenic
AAACTTAGTTCTTTGATCAA+AGG 0.483857 4_1:-83656601 None:intergenic
CACCGGTTGATAAATCTTCA+AGG 0.484431 4_1:+83656662 Msa0578970:CDS
AATGTTAAAAGATCCAGCTC+AGG 0.485668 4_1:+83657546 Msa0578970:CDS
TGTTGGTGTTGGTGTTGTTG+TGG 0.488043 4_1:-83656424 None:intergenic
CAAAAGCACTCTCAATCACC+TGG 0.496488 4_1:+83656979 Msa0578970:CDS
GGAAGTTCCCAACCCTGAGC+TGG 0.506652 4_1:-83657559 None:intergenic
TAACTATGAGTACATATTGA+AGG 0.507376 4_1:+83656630 Msa0578970:CDS
GTTAAGAGCACGGTGGATAG+AGG 0.513931 4_1:+83657648 Msa0578970:CDS
TTGTACTGCCTTCTTGCTGG+AGG 0.519711 4_1:-83656533 None:intergenic
CATACAATATATAATATGTT+GGG 0.525022 4_1:-83658001 None:intergenic
GTTCTTACATCATAAGACTA+AGG 0.532133 4_1:+83656717 Msa0578970:CDS
TGTACTGCCTTCTTGCTGGA+GGG 0.535237 4_1:-83656532 None:intergenic
ATTACGATCACCTTCGAGAA+GGG 0.539166 4_1:+83656471 Msa0578970:CDS
TAAAAGATCCAGCTCAGGGT+TGG 0.544106 4_1:+83657551 Msa0578970:CDS
GAATGTTGATGTGTTTGTTG+TGG 0.547811 4_1:-83656391 None:intergenic
ATATCAATGTTTGAATATGA+AGG 0.554106 4_1:+83657721 Msa0578970:CDS
AATATGTACTCATAGTTATG+TGG 0.557085 4_1:-83656625 None:intergenic
ACCGGTTGATAAATCTTCAA+GGG 0.558433 4_1:+83656663 Msa0578970:CDS
AGGACAAGTCGAACATTCAC+CGG 0.560100 4_1:-83657580 None:intergenic
TAGCTCTGCTGTGTCAAACA+TGG 0.565237 4_1:-83657934 None:intergenic
TTGAATATGAAGGTGGTATG+TGG 0.566199 4_1:+83657731 Msa0578970:CDS
TTGTGTAATTCATAATATGA+AGG 0.566700 4_1:+83657902 Msa0578970:three_prime_UTR
ATTGAAGGATGCAGATTCAC+CGG 0.568231 4_1:+83656645 Msa0578970:CDS
ATGTGTGATCAGCTATATGC+TGG 0.569259 4_1:+83656691 Msa0578970:CDS
ATAATTTGGATCTTCTGCCC+AGG 0.570223 4_1:-83656997 None:intergenic
AGGAAAGAAGCAGCAACACA+AGG 0.570643 4_1:+83657609 Msa0578970:CDS
TGTTGTGGCTGTGATTGTGG+TGG 0.571307 4_1:-83656376 None:intergenic
AAAATTACCCTCCAGCAAGA+AGG 0.582340 4_1:+83656525 Msa0578970:CDS
AATTACGATCACCTTCGAGA+AGG 0.585667 4_1:+83656470 Msa0578970:CDS
AAACAAGGGCTTGTCATCAA+AGG 0.587551 4_1:+83657754 Msa0578970:CDS
GAAGGTGGTATGTGGAAACA+AGG 0.592943 4_1:+83657739 Msa0578970:CDS
GACACAAGGAAGCTTTCACC+AGG 0.601273 4_1:+83657496 Msa0578970:CDS
AGGCATTGCTATCAAACCAA+AGG 0.606104 4_1:+83657774 Msa0578970:CDS
TAATGGAAAAGTTAAGAGCA+CGG 0.611140 4_1:+83657638 Msa0578970:CDS
ATGTTAAAAGATCCAGCTCA+GGG 0.613664 4_1:+83657547 Msa0578970:CDS
TCAATGTTTGAATATGAAGG+TGG 0.618732 4_1:+83657724 Msa0578970:CDS
TTCATGGAAAATTCGACACA+AGG 0.625618 4_1:+83657482 Msa0578970:CDS
AAGGTGGTATGTGGAAACAA+GGG 0.657478 4_1:+83657740 Msa0578970:CDS
CAGTGAGGGGATGACTGAGG+TGG 0.662615 4_1:+83657429 Msa0578970:intron
CTGAACTGAAGAGAGTGTGT+TGG 0.663119 4_1:+83657452 Msa0578970:CDS
TTGCAGTGAGGGGATGACTG+AGG 0.666138 4_1:+83657426 Msa0578970:intron
CGGTGGATAGAGGTTCCAGT+TGG 0.671489 4_1:+83657658 Msa0578970:CDS
AAAAGCACTCTCAATCACCT+GGG 0.675178 4_1:+83656980 Msa0578970:CDS
TAATTCATAATATGAAGGTG+TGG 0.683915 4_1:+83657907 Msa0578970:three_prime_UTR
GTTCGACTTGTCCTTCCAGG+AGG 0.692090 4_1:+83657589 Msa0578970:CDS
TGGAAAAGTTAAGAGCACGG+TGG 0.775430 4_1:+83657641 Msa0578970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATTTATTTATTATAAA+TGG - chr4_1:83657848-83657867 None:intergenic 0.0%
!! ATTTATTTATTTATTATAAA+TGG - chr4_1:83657848-83657867 None:intergenic 0.0%
!! AGAATAATAATAATAGAAAA+TGG - chr4_1:83658033-83658052 None:intergenic 10.0%
!! AGAATAATAATAATAGAAAA+TGG - chr4_1:83658033-83658052 None:intergenic 10.0%
!! AATAACTAAATTCAATTTCA+AGG - chr4_1:83656833-83656852 None:intergenic 15.0%
!! GATTAAATTGTTGATATAAT+AGG - chr4_1:83657079-83657098 None:intergenic 15.0%
!!! TTTTTCTAAGTTATATGTAA+AGG - chr4_1:83657184-83657203 None:intergenic 15.0%
!! CATACAATATATAATATGTT+GGG - chr4_1:83658004-83658023 None:intergenic 15.0%
!! TCATACAATATATAATATGT+TGG - chr4_1:83658005-83658024 None:intergenic 15.0%
!! AATAACTAAATTCAATTTCA+AGG - chr4_1:83656833-83656852 None:intergenic 15.0%
!! GATTAAATTGTTGATATAAT+AGG - chr4_1:83657079-83657098 None:intergenic 15.0%
!!! TTTTTCTAAGTTATATGTAA+AGG - chr4_1:83657184-83657203 None:intergenic 15.0%
!! CATACAATATATAATATGTT+GGG - chr4_1:83658004-83658023 None:intergenic 15.0%
!! TCATACAATATATAATATGT+TGG - chr4_1:83658005-83658024 None:intergenic 15.0%
!! TAGGAAAAGATAATGATATA+AGG - chr4_1:83657060-83657079 None:intergenic 20.0%
!! TGAAATTATTTGTAATCACT+GGG - chr4_1:83657101-83657120 None:intergenic 20.0%
!! TTGAAATTATTTGTAATCAC+TGG - chr4_1:83657102-83657121 None:intergenic 20.0%
!! ATATCAATGTTTGAATATGA+AGG + chr4_1:83657721-83657740 Msa0578970:CDS 20.0%
!! TTGTGTAATTCATAATATGA+AGG + chr4_1:83657902-83657921 Msa0578970:three_prime_UTR 20.0%
!! GAGTTTATGAAATTTATAAG+AGG - chr4_1:83657964-83657983 None:intergenic 20.0%
!! TAGGAAAAGATAATGATATA+AGG - chr4_1:83657060-83657079 None:intergenic 20.0%
!! TGAAATTATTTGTAATCACT+GGG - chr4_1:83657101-83657120 None:intergenic 20.0%
!! TTGAAATTATTTGTAATCAC+TGG - chr4_1:83657102-83657121 None:intergenic 20.0%
!! ATATCAATGTTTGAATATGA+AGG + chr4_1:83657721-83657740 Msa0578970:CDS 20.0%
!! TTGTGTAATTCATAATATGA+AGG + chr4_1:83657902-83657921 Msa0578970:three_prime_UTR 20.0%
!! GAGTTTATGAAATTTATAAG+AGG - chr4_1:83657964-83657983 None:intergenic 20.0%
! ATATAGCATATGAAGTGAAA+TGG + chr4_1:83656327-83656346 Msa0578970:exon 25.0%
! TATAGCATATGAAGTGAAAT+GGG + chr4_1:83656328-83656347 Msa0578970:exon 25.0%
!! AAACTTAGTTCTTTGATCAA+AGG - chr4_1:83656604-83656623 None:intergenic 25.0%
! AATATGTACTCATAGTTATG+TGG - chr4_1:83656628-83656647 None:intergenic 25.0%
! TAACTATGAGTACATATTGA+AGG + chr4_1:83656630-83656649 Msa0578970:CDS 25.0%
! AACTAAATTCAATTTCAAGG+AGG - chr4_1:83656830-83656849 None:intergenic 25.0%
! AACGTTGTTTGTAGAAATAT+TGG + chr4_1:83656916-83656935 Msa0578970:intron 25.0%
! ACGTTGTTTGTAGAAATATT+GGG + chr4_1:83656917-83656936 Msa0578970:intron 25.0%
! AAGATCCAAATTATTGGAAA+TGG + chr4_1:83657006-83657025 Msa0578970:CDS 25.0%
! TGTATCCATTTCCAATAATT+TGG - chr4_1:83657014-83657033 None:intergenic 25.0%
! TGTAATTCATAGATGTTTCT+TGG - chr4_1:83657301-83657320 None:intergenic 25.0%
! ATTACAAGCTAATTCTATCT+AGG + chr4_1:83657315-83657334 Msa0578970:intron 25.0%
! AAACATAGCTTGATCTAATT+AGG - chr4_1:83657407-83657426 None:intergenic 25.0%
! GAAACTTGATATAAAATTCC+TGG - chr4_1:83657517-83657536 None:intergenic 25.0%
!!! CTATCTATTTTTCATTCCTT+TGG - chr4_1:83657793-83657812 None:intergenic 25.0%
! TAATTCATAATATGAAGGTG+TGG + chr4_1:83657907-83657926 Msa0578970:three_prime_UTR 25.0%
! ATATAGCATATGAAGTGAAA+TGG + chr4_1:83656327-83656346 Msa0578970:exon 25.0%
! TATAGCATATGAAGTGAAAT+GGG + chr4_1:83656328-83656347 Msa0578970:exon 25.0%
!! AAACTTAGTTCTTTGATCAA+AGG - chr4_1:83656604-83656623 None:intergenic 25.0%
! AATATGTACTCATAGTTATG+TGG - chr4_1:83656628-83656647 None:intergenic 25.0%
! TAACTATGAGTACATATTGA+AGG + chr4_1:83656630-83656649 Msa0578970:CDS 25.0%
! AACTAAATTCAATTTCAAGG+AGG - chr4_1:83656830-83656849 None:intergenic 25.0%
! AACGTTGTTTGTAGAAATAT+TGG + chr4_1:83656916-83656935 Msa0578970:intron 25.0%
! ACGTTGTTTGTAGAAATATT+GGG + chr4_1:83656917-83656936 Msa0578970:intron 25.0%
! AAGATCCAAATTATTGGAAA+TGG + chr4_1:83657006-83657025 Msa0578970:CDS 25.0%
! TGTATCCATTTCCAATAATT+TGG - chr4_1:83657014-83657033 None:intergenic 25.0%
! TGTAATTCATAGATGTTTCT+TGG - chr4_1:83657301-83657320 None:intergenic 25.0%
! ATTACAAGCTAATTCTATCT+AGG + chr4_1:83657315-83657334 Msa0578970:intron 25.0%
! AAACATAGCTTGATCTAATT+AGG - chr4_1:83657407-83657426 None:intergenic 25.0%
! GAAACTTGATATAAAATTCC+TGG - chr4_1:83657517-83657536 None:intergenic 25.0%
!!! CTATCTATTTTTCATTCCTT+TGG - chr4_1:83657793-83657812 None:intergenic 25.0%
! TAATTCATAATATGAAGGTG+TGG + chr4_1:83657907-83657926 Msa0578970:three_prime_UTR 25.0%
!! TATTGGTTGGTTCATTTTGT+TGG - chr4_1:83656444-83656463 None:intergenic 30.0%
ACAAAATGAACCAACCAATA+AGG + chr4_1:83656444-83656463 Msa0578970:CDS 30.0%
TGATCGTAATTCTTCCTTAT+TGG - chr4_1:83656461-83656480 None:intergenic 30.0%
!! GGTAATTTTGTTTGATGTTG+AGG - chr4_1:83656514-83656533 None:intergenic 30.0%
TAGTTCTTTGATCAAAGGTT+TGG - chr4_1:83656599-83656618 None:intergenic 30.0%
GTTCTTACATCATAAGACTA+AGG + chr4_1:83656717-83656736 Msa0578970:CDS 30.0%
TTTAGGGACTAAATTGAAGA+TGG - chr4_1:83657245-83657264 None:intergenic 30.0%
GCAACACAAGGAAAATTTAA+TGG + chr4_1:83657621-83657640 Msa0578970:CDS 30.0%
TAATGGAAAAGTTAAGAGCA+CGG + chr4_1:83657638-83657657 Msa0578970:CDS 30.0%
TTTGTAGCATCTGAAAAAGA+TGG + chr4_1:83657685-83657704 Msa0578970:CDS 30.0%
TCAATGTTTGAATATGAAGG+TGG + chr4_1:83657724-83657743 Msa0578970:CDS 30.0%
!! TATTGGTTGGTTCATTTTGT+TGG - chr4_1:83656444-83656463 None:intergenic 30.0%
ACAAAATGAACCAACCAATA+AGG + chr4_1:83656444-83656463 Msa0578970:CDS 30.0%
TGATCGTAATTCTTCCTTAT+TGG - chr4_1:83656461-83656480 None:intergenic 30.0%
!! GGTAATTTTGTTTGATGTTG+AGG - chr4_1:83656514-83656533 None:intergenic 30.0%
TAGTTCTTTGATCAAAGGTT+TGG - chr4_1:83656599-83656618 None:intergenic 30.0%
GTTCTTACATCATAAGACTA+AGG + chr4_1:83656717-83656736 Msa0578970:CDS 30.0%
TTTAGGGACTAAATTGAAGA+TGG - chr4_1:83657245-83657264 None:intergenic 30.0%
GCAACACAAGGAAAATTTAA+TGG + chr4_1:83657621-83657640 Msa0578970:CDS 30.0%
TAATGGAAAAGTTAAGAGCA+CGG + chr4_1:83657638-83657657 Msa0578970:CDS 30.0%
TTTGTAGCATCTGAAAAAGA+TGG + chr4_1:83657685-83657704 Msa0578970:CDS 30.0%
TCAATGTTTGAATATGAAGG+TGG + chr4_1:83657724-83657743 Msa0578970:CDS 30.0%
! GAATGTTGATGTGTTTGTTG+TGG - chr4_1:83656394-83656413 None:intergenic 35.0%
! TTGGTTCATTTTGTTGGTGT+TGG - chr4_1:83656438-83656457 None:intergenic 35.0%
CGTAATTCTTCCTTATTGGT+TGG - chr4_1:83656457-83656476 None:intergenic 35.0%
!! ACCGGTTGATAAATCTTCAA+GGG + chr4_1:83656663-83656682 Msa0578970:CDS 35.0%
TCCCTTGAAGATTTATCAAC+CGG - chr4_1:83656667-83656686 None:intergenic 35.0%
CAAGGAGGACAATTGTAAAA+TGG - chr4_1:83656815-83656834 None:intergenic 35.0%
TGCATACAACATGAAACAGT+TGG - chr4_1:83656961-83656980 None:intergenic 35.0%
GGATACAGCAAAAAGATGTT+AGG + chr4_1:83657027-83657046 Msa0578970:CDS 35.0%
!! TTCTATCTAGGACTTTTGTC+TGG + chr4_1:83657327-83657346 Msa0578970:intron 35.0%
TTCATGGAAAATTCGACACA+AGG + chr4_1:83657482-83657501 Msa0578970:CDS 35.0%
AATGTTAAAAGATCCAGCTC+AGG + chr4_1:83657546-83657565 Msa0578970:CDS 35.0%
ATGTTAAAAGATCCAGCTCA+GGG + chr4_1:83657547-83657566 Msa0578970:CDS 35.0%
TTGAATATGAAGGTGGTATG+TGG + chr4_1:83657731-83657750 Msa0578970:CDS 35.0%
TTACACAAACAGACTCTTCA+TGG - chr4_1:83657890-83657909 None:intergenic 35.0%
! GAATGTTGATGTGTTTGTTG+TGG - chr4_1:83656394-83656413 None:intergenic 35.0%
! TTGGTTCATTTTGTTGGTGT+TGG - chr4_1:83656438-83656457 None:intergenic 35.0%
CGTAATTCTTCCTTATTGGT+TGG - chr4_1:83656457-83656476 None:intergenic 35.0%
!! ACCGGTTGATAAATCTTCAA+GGG + chr4_1:83656663-83656682 Msa0578970:CDS 35.0%
TCCCTTGAAGATTTATCAAC+CGG - chr4_1:83656667-83656686 None:intergenic 35.0%
CAAGGAGGACAATTGTAAAA+TGG - chr4_1:83656815-83656834 None:intergenic 35.0%
TGCATACAACATGAAACAGT+TGG - chr4_1:83656961-83656980 None:intergenic 35.0%
GGATACAGCAAAAAGATGTT+AGG + chr4_1:83657027-83657046 Msa0578970:CDS 35.0%
!! TTCTATCTAGGACTTTTGTC+TGG + chr4_1:83657327-83657346 Msa0578970:intron 35.0%
TTCATGGAAAATTCGACACA+AGG + chr4_1:83657482-83657501 Msa0578970:CDS 35.0%
AATGTTAAAAGATCCAGCTC+AGG + chr4_1:83657546-83657565 Msa0578970:CDS 35.0%
ATGTTAAAAGATCCAGCTCA+GGG + chr4_1:83657547-83657566 Msa0578970:CDS 35.0%
TTGAATATGAAGGTGGTATG+TGG + chr4_1:83657731-83657750 Msa0578970:CDS 35.0%
TTACACAAACAGACTCTTCA+TGG - chr4_1:83657890-83657909 None:intergenic 35.0%
AATTACGATCACCTTCGAGA+AGG + chr4_1:83656470-83656489 Msa0578970:CDS 40.0%
ATTACGATCACCTTCGAGAA+GGG + chr4_1:83656471-83656490 Msa0578970:CDS 40.0%
! AACAGATTTTCCCTTCTCGA+AGG - chr4_1:83656484-83656503 None:intergenic 40.0%
AAAATTACCCTCCAGCAAGA+AGG + chr4_1:83656525-83656544 Msa0578970:CDS 40.0%
ATTGAAGGATGCAGATTCAC+CGG + chr4_1:83656645-83656664 Msa0578970:CDS 40.0%
!! CACCGGTTGATAAATCTTCA+AGG + chr4_1:83656662-83656681 Msa0578970:CDS 40.0%
ATGTGTGATCAGCTATATGC+TGG + chr4_1:83656691-83656710 Msa0578970:CDS 40.0%
! CAACATGAAACAGTTGGCTT+TGG - chr4_1:83656955-83656974 None:intergenic 40.0%
!! AAAAGCACTCTCAATCACCT+GGG + chr4_1:83656980-83656999 Msa0578970:CDS 40.0%
ATAATTTGGATCTTCTGCCC+AGG - chr4_1:83657000-83657019 None:intergenic 40.0%
GGGCAGAAGATCCAAATTAT+TGG + chr4_1:83657000-83657019 Msa0578970:CDS 40.0%
! TCAAGCTATGTTTTGCAGTG+AGG + chr4_1:83657414-83657433 Msa0578970:intron 40.0%
! CAAGCTATGTTTTGCAGTGA+GGG + chr4_1:83657415-83657434 Msa0578970:intron 40.0%
! AAGCTATGTTTTGCAGTGAG+GGG + chr4_1:83657416-83657435 Msa0578970:intron 40.0%
!! GTGTGTTGGTTAGAAGTTCA+TGG + chr4_1:83657466-83657485 Msa0578970:CDS 40.0%
GTAGCATCTGAAAAAGATGG+CGG + chr4_1:83657688-83657707 Msa0578970:CDS 40.0%
AAGGTGGTATGTGGAAACAA+GGG + chr4_1:83657740-83657759 Msa0578970:CDS 40.0%
AAACAAGGGCTTGTCATCAA+AGG + chr4_1:83657754-83657773 Msa0578970:CDS 40.0%
! AGGCATTGCTATCAAACCAA+AGG + chr4_1:83657774-83657793 Msa0578970:CDS 40.0%
AATTACGATCACCTTCGAGA+AGG + chr4_1:83656470-83656489 Msa0578970:CDS 40.0%
ATTACGATCACCTTCGAGAA+GGG + chr4_1:83656471-83656490 Msa0578970:CDS 40.0%
! AACAGATTTTCCCTTCTCGA+AGG - chr4_1:83656484-83656503 None:intergenic 40.0%
AAAATTACCCTCCAGCAAGA+AGG + chr4_1:83656525-83656544 Msa0578970:CDS 40.0%
ATTGAAGGATGCAGATTCAC+CGG + chr4_1:83656645-83656664 Msa0578970:CDS 40.0%
!! CACCGGTTGATAAATCTTCA+AGG + chr4_1:83656662-83656681 Msa0578970:CDS 40.0%
ATGTGTGATCAGCTATATGC+TGG + chr4_1:83656691-83656710 Msa0578970:CDS 40.0%
! CAACATGAAACAGTTGGCTT+TGG - chr4_1:83656955-83656974 None:intergenic 40.0%
!! AAAAGCACTCTCAATCACCT+GGG + chr4_1:83656980-83656999 Msa0578970:CDS 40.0%
ATAATTTGGATCTTCTGCCC+AGG - chr4_1:83657000-83657019 None:intergenic 40.0%
GGGCAGAAGATCCAAATTAT+TGG + chr4_1:83657000-83657019 Msa0578970:CDS 40.0%
! TCAAGCTATGTTTTGCAGTG+AGG + chr4_1:83657414-83657433 Msa0578970:intron 40.0%
! CAAGCTATGTTTTGCAGTGA+GGG + chr4_1:83657415-83657434 Msa0578970:intron 40.0%
! AAGCTATGTTTTGCAGTGAG+GGG + chr4_1:83657416-83657435 Msa0578970:intron 40.0%
!! GTGTGTTGGTTAGAAGTTCA+TGG + chr4_1:83657466-83657485 Msa0578970:CDS 40.0%
GTAGCATCTGAAAAAGATGG+CGG + chr4_1:83657688-83657707 Msa0578970:CDS 40.0%
AAGGTGGTATGTGGAAACAA+GGG + chr4_1:83657740-83657759 Msa0578970:CDS 40.0%
AAACAAGGGCTTGTCATCAA+AGG + chr4_1:83657754-83657773 Msa0578970:CDS 40.0%
! AGGCATTGCTATCAAACCAA+AGG + chr4_1:83657774-83657793 Msa0578970:CDS 40.0%
!! GTTTGTTGTGGCTGTGATTG+TGG - chr4_1:83656382-83656401 None:intergenic 45.0%
!! TGTTGGTGTTGGTGTTGTTG+TGG - chr4_1:83656427-83656446 None:intergenic 45.0%
! GTTTTGTACTGCCTTCTTGC+TGG - chr4_1:83656539-83656558 None:intergenic 45.0%
! GGTTGCTGATTGAGTCTCAT+TGG - chr4_1:83656578-83656597 None:intergenic 45.0%
!! CAAAAGCACTCTCAATCACC+TGG + chr4_1:83656979-83656998 Msa0578970:CDS 45.0%
! CTGAACTGAAGAGAGTGTGT+TGG + chr4_1:83657452-83657471 Msa0578970:CDS 45.0%
TAAAAGATCCAGCTCAGGGT+TGG + chr4_1:83657551-83657570 Msa0578970:CDS 45.0%
AAAAGATCCAGCTCAGGGTT+GGG + chr4_1:83657552-83657571 Msa0578970:CDS 45.0%
AGGACAAGTCGAACATTCAC+CGG - chr4_1:83657583-83657602 None:intergenic 45.0%
! AATGTTCGACTTGTCCTTCC+AGG + chr4_1:83657586-83657605 Msa0578970:CDS 45.0%
AGGAAAGAAGCAGCAACACA+AGG + chr4_1:83657609-83657628 Msa0578970:CDS 45.0%
! TGGAAAAGTTAAGAGCACGG+TGG + chr4_1:83657641-83657660 Msa0578970:CDS 45.0%
GATGCTACAAACTCACCAAC+TGG - chr4_1:83657676-83657695 None:intergenic 45.0%
! TGAAAAAGATGGCGGTGAGA+TGG + chr4_1:83657696-83657715 Msa0578970:CDS 45.0%
GAAGGTGGTATGTGGAAACA+AGG + chr4_1:83657739-83657758 Msa0578970:CDS 45.0%
! TAGCTCTGCTGTGTCAAACA+TGG - chr4_1:83657937-83657956 None:intergenic 45.0%
!! GTTTGTTGTGGCTGTGATTG+TGG - chr4_1:83656382-83656401 None:intergenic 45.0%
!! TGTTGGTGTTGGTGTTGTTG+TGG - chr4_1:83656427-83656446 None:intergenic 45.0%
! GTTTTGTACTGCCTTCTTGC+TGG - chr4_1:83656539-83656558 None:intergenic 45.0%
! GGTTGCTGATTGAGTCTCAT+TGG - chr4_1:83656578-83656597 None:intergenic 45.0%
!! CAAAAGCACTCTCAATCACC+TGG + chr4_1:83656979-83656998 Msa0578970:CDS 45.0%
! CTGAACTGAAGAGAGTGTGT+TGG + chr4_1:83657452-83657471 Msa0578970:CDS 45.0%
TAAAAGATCCAGCTCAGGGT+TGG + chr4_1:83657551-83657570 Msa0578970:CDS 45.0%
AAAAGATCCAGCTCAGGGTT+GGG + chr4_1:83657552-83657571 Msa0578970:CDS 45.0%
AGGACAAGTCGAACATTCAC+CGG - chr4_1:83657583-83657602 None:intergenic 45.0%
! AATGTTCGACTTGTCCTTCC+AGG + chr4_1:83657586-83657605 Msa0578970:CDS 45.0%
AGGAAAGAAGCAGCAACACA+AGG + chr4_1:83657609-83657628 Msa0578970:CDS 45.0%
! TGGAAAAGTTAAGAGCACGG+TGG + chr4_1:83657641-83657660 Msa0578970:CDS 45.0%
GATGCTACAAACTCACCAAC+TGG - chr4_1:83657676-83657695 None:intergenic 45.0%
! TGAAAAAGATGGCGGTGAGA+TGG + chr4_1:83657696-83657715 Msa0578970:CDS 45.0%
GAAGGTGGTATGTGGAAACA+AGG + chr4_1:83657739-83657758 Msa0578970:CDS 45.0%
! TAGCTCTGCTGTGTCAAACA+TGG - chr4_1:83657937-83657956 None:intergenic 45.0%
!! TAAAAAATTTATATAGTTTA+GGG - chr4_1:83657261-83657280 None:intergenic 5.0%
!! TTAAAAAATTTATATAGTTT+AGG - chr4_1:83657262-83657281 None:intergenic 5.0%
!! TAAAAAATTTATATAGTTTA+GGG - chr4_1:83657261-83657280 None:intergenic 5.0%
!! TTAAAAAATTTATATAGTTT+AGG - chr4_1:83657262-83657281 None:intergenic 5.0%
TGTTGTGGCTGTGATTGTGG+TGG - chr4_1:83656379-83656398 None:intergenic 50.0%
TGTACTGCCTTCTTGCTGGA+GGG - chr4_1:83656535-83656554 None:intergenic 50.0%
TTGTACTGCCTTCTTGCTGG+AGG - chr4_1:83656536-83656555 None:intergenic 50.0%
GACACAAGGAAGCTTTCACC+AGG + chr4_1:83657496-83657515 Msa0578970:CDS 50.0%
! TGTTGCTGCTTCTTTCCTCC+TGG - chr4_1:83657607-83657626 None:intergenic 50.0%
! GTTAAGAGCACGGTGGATAG+AGG + chr4_1:83657648-83657667 Msa0578970:CDS 50.0%
TGTTGTGGCTGTGATTGTGG+TGG - chr4_1:83656379-83656398 None:intergenic 50.0%
TGTACTGCCTTCTTGCTGGA+GGG - chr4_1:83656535-83656554 None:intergenic 50.0%
TTGTACTGCCTTCTTGCTGG+AGG - chr4_1:83656536-83656555 None:intergenic 50.0%
GACACAAGGAAGCTTTCACC+AGG + chr4_1:83657496-83657515 Msa0578970:CDS 50.0%
! TGTTGCTGCTTCTTTCCTCC+TGG - chr4_1:83657607-83657626 None:intergenic 50.0%
! GTTAAGAGCACGGTGGATAG+AGG + chr4_1:83657648-83657667 Msa0578970:CDS 50.0%
TTGCAGTGAGGGGATGACTG+AGG + chr4_1:83657426-83657445 Msa0578970:intron 55.0%
AGCTCAGGGTTGGGAACTTC+CGG + chr4_1:83657561-83657580 Msa0578970:CDS 55.0%
! GTTCGACTTGTCCTTCCAGG+AGG + chr4_1:83657589-83657608 Msa0578970:CDS 55.0%
GCTGCTTCTTTCCTCCTGGA+AGG - chr4_1:83657603-83657622 None:intergenic 55.0%
CGGTGGATAGAGGTTCCAGT+TGG + chr4_1:83657658-83657677 Msa0578970:CDS 55.0%
TTGCAGTGAGGGGATGACTG+AGG + chr4_1:83657426-83657445 Msa0578970:intron 55.0%
AGCTCAGGGTTGGGAACTTC+CGG + chr4_1:83657561-83657580 Msa0578970:CDS 55.0%
! GTTCGACTTGTCCTTCCAGG+AGG + chr4_1:83657589-83657608 Msa0578970:CDS 55.0%
GCTGCTTCTTTCCTCCTGGA+AGG - chr4_1:83657603-83657622 None:intergenic 55.0%
CGGTGGATAGAGGTTCCAGT+TGG + chr4_1:83657658-83657677 Msa0578970:CDS 55.0%
CAGTGAGGGGATGACTGAGG+TGG + chr4_1:83657429-83657448 Msa0578970:intron 60.0%
GGAAGTTCCCAACCCTGAGC+TGG - chr4_1:83657562-83657581 None:intergenic 60.0%
CAGTGAGGGGATGACTGAGG+TGG + chr4_1:83657429-83657448 Msa0578970:intron 60.0%
GGAAGTTCCCAACCCTGAGC+TGG - chr4_1:83657562-83657581 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 83656299 83658053 83656299 ID=Msa0578970;Name=Msa0578970
chr4_1 mRNA 83656299 83658053 83656299 ID=Msa0578970-mRNA-1;Parent=Msa0578970;Name=Msa0578970-mRNA-1;_AED=0.01;_eAED=0.01;_QI=47|1|1|1|1|1|3|252|293
chr4_1 exon 83656299 83656738 83656299 ID=Msa0578970-mRNA-1:exon:30492;Parent=Msa0578970-mRNA-1
chr4_1 exon 83656930 83657048 83656930 ID=Msa0578970-mRNA-1:exon:30493;Parent=Msa0578970-mRNA-1
chr4_1 exon 83657432 83658053 83657432 ID=Msa0578970-mRNA-1:exon:30494;Parent=Msa0578970-mRNA-1
chr4_1 five_prime_UTR 83656299 83656345 83656299 ID=Msa0578970-mRNA-1:five_prime_utr;Parent=Msa0578970-mRNA-1
chr4_1 CDS 83656346 83656738 83656346 ID=Msa0578970-mRNA-1:cds;Parent=Msa0578970-mRNA-1
chr4_1 CDS 83656930 83657048 83656930 ID=Msa0578970-mRNA-1:cds;Parent=Msa0578970-mRNA-1
chr4_1 CDS 83657432 83657801 83657432 ID=Msa0578970-mRNA-1:cds;Parent=Msa0578970-mRNA-1
chr4_1 three_prime_UTR 83657802 83658053 83657802 ID=Msa0578970-mRNA-1:three_prime_utr;Parent=Msa0578970-mRNA-1
Gene Sequence

>Msa0578970

ATGGGTGCTTCTCTATCAGAGCTAGAGCAACCACCACAATCACAGCCACAACAAACACATCAACATTCACAGTTACAGCCACAACAACACCAACACCAACAAAATGAACCAACCAATAAGGAAGAATTACGATCACCTTCGAGAAGGGAAAATCTGTTGTCGTCTCCTCAACATCAAACAAAATTACCCTCCAGCAAGAAGGCAGTACAAAACTCTACAGTTGTAAAATCCAATGAGACTCAATCAGCAACCAAACCTTTGATCAAAGAACTAAGTTTGCCACATAACTATGAGTACATATTGAAGGATGCAGATTCACCGGTTGATAAATCTTCAAGGGAAAAGATGTGTGATCAGCTATATGCTGGAGTGTTCTTACATCATAAGACTAAGAAATATTGGGTAGAGAAGAACTCCAAAGCCAACTGTTTCATGTTGTATGCAAAAGCACTCTCAATCACCTGGGCAGAAGATCCAAATTATTGGAAATGGATACAGCAAAAAGATGTTAGTGAGGGGATGACTGAGGTGGCTGAACTGAAGAGAGTGTGTTGGTTAGAAGTTCATGGAAAATTCGACACAAGGAAGCTTTCACCAGGAATTTTATATCAAGTTTCATTTATTATAATGTTAAAAGATCCAGCTCAGGGTTGGGAACTTCCGGTGAATGTTCGACTTGTCCTTCCAGGAGGAAAGAAGCAGCAACACAAGGAAAATTTAATGGAAAAGTTAAGAGCACGGTGGATAGAGGTTCCAGTTGGTGAGTTTGTAGCATCTGAAAAAGATGGCGGTGAGATGGAGATATCAATGTTTGAATATGAAGGTGGTATGTGGAAACAAGGGCTTGTCATCAAAGGCATTGCTATCAAACCAAAGGAATGA

Protein sequence

>Msa0578970

MGASLSELEQPPQSQPQQTHQHSQLQPQQHQHQQNEPTNKEELRSPSRRENLLSSPQHQTKLPSSKKAVQNSTVVKSNETQSATKPLIKELSLPHNYEYILKDADSPVDKSSREKMCDQLYAGVFLHHKTKKYWVEKNSKANCFMLYAKALSITWAEDPNYWKWIQQKDVSEGMTEVAELKRVCWLEVHGKFDTRKLSPGILYQVSFIIMLKDPAQGWELPVNVRLVLPGGKKQQHKENLMEKLRARWIEVPVGEFVASEKDGGEMEISMFEYEGGMWKQGLVIKGIAIKPKE*