Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511120 | XP_024635366.1 | 93.662 | 426 | 6 | 3 | 1 | 421 | 1 | 410 | 0.0 | 785 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511120 | sp|Q8RXN3|PPT1_ARATH | 66.125 | 431 | 113 | 8 | 1 | 421 | 1 | 408 | 0.0 | 519 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511120 | G7J5E5 | 93.662 | 426 | 6 | 3 | 1 | 421 | 1 | 410 | 0.0 | 785 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0220440 | Msa0511120 | -0.806266 | 8.943436e-50 | -8.615850e-47 |
| Msa0422410 | Msa0511120 | 0.940576 | 1.841384e-100 | -8.615850e-47 |
| Msa0450250 | Msa0511120 | 0.955920 | 9.923391e-114 | -8.615850e-47 |
| Msa0465670 | Msa0511120 | 0.814457 | 1.525939e-51 | -8.615850e-47 |
| Msa0511120 | Msa0511200 | 0.986030 | 1.906169e-165 | -8.615850e-47 |
| Msa0511120 | Msa0876850 | 0.849427 | 3.256745e-60 | -8.615850e-47 |
| Msa0511120 | Msa0942080 | 0.822019 | 2.963724e-53 | -8.615850e-47 |
| Msa0511120 | Msa1031990 | 0.805641 | 1.210433e-49 | -8.615850e-47 |
| Msa0511120 | Msa1116130 | 0.802419 | 5.661123e-49 | -8.615850e-47 |
| Msa0511120 | Msa1183100 | 0.826535 | 2.572134e-54 | -8.615850e-47 |
| Msa0511120 | Msa1265340 | 0.815320 | 9.822763e-52 | -8.615850e-47 |
| Msa0511120 | Msa1302190 | 0.804532 | 2.064567e-49 | -8.615850e-47 |
| Msa0511120 | Msa1388790 | 0.803828 | 2.893074e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511120 | MtrunA17_Chr3g0117501 | 93.662 | 426 | 6 | 3 | 1 | 421 | 1 | 410 | 0.0 | 785 |
| Msa0511120 | MtrunA17_Chr4g0058971 | 74.455 | 321 | 60 | 3 | 105 | 420 | 79 | 382 | 1.94e-171 | 485 |
| Msa0511120 | MtrunA17_Chr6g0449891 | 67.751 | 338 | 92 | 2 | 88 | 420 | 90 | 415 | 5.75e-156 | 447 |
| Msa0511120 | MtrunA17_Chr2g0288011 | 39.335 | 361 | 182 | 7 | 73 | 413 | 52 | 395 | 2.71e-65 | 214 |
| Msa0511120 | MtrunA17_Chr3g0097931 | 39.233 | 339 | 183 | 5 | 81 | 413 | 80 | 401 | 1.73e-64 | 212 |
| Msa0511120 | MtrunA17_Chr2g0291851 | 41.176 | 340 | 172 | 7 | 82 | 410 | 70 | 392 | 1.51e-63 | 209 |
| Msa0511120 | MtrunA17_Chr4g0046561 | 37.249 | 349 | 190 | 8 | 83 | 421 | 69 | 398 | 8.73e-62 | 205 |
| Msa0511120 | MtrunA17_Chr4g0074541 | 40.533 | 338 | 173 | 5 | 81 | 413 | 78 | 392 | 4.53e-61 | 202 |
| Msa0511120 | MtrunA17_Chr5g0419001 | 34.351 | 393 | 222 | 6 | 48 | 421 | 28 | 403 | 8.95e-60 | 200 |
| Msa0511120 | MtrunA17_Chr3g0114581 | 29.204 | 339 | 188 | 15 | 101 | 417 | 3 | 311 | 3.64e-23 | 99.8 |
| Msa0511120 | MtrunA17_Chr1g0160071 | 28.788 | 330 | 186 | 14 | 104 | 417 | 14 | 310 | 8.43e-22 | 95.9 |
| Msa0511120 | MtrunA17_Chr4g0008071 | 25.817 | 306 | 199 | 5 | 118 | 413 | 20 | 307 | 1.87e-20 | 91.3 |
| Msa0511120 | MtrunA17_Chr3g0112981 | 25.246 | 305 | 202 | 6 | 118 | 413 | 32 | 319 | 1.80e-18 | 85.9 |
| Msa0511120 | MtrunA17_Chr5g0436341 | 24.684 | 316 | 200 | 7 | 113 | 413 | 11 | 303 | 5.95e-17 | 81.3 |
| Msa0511120 | MtrunA17_Chr8g0382081 | 25.439 | 228 | 153 | 2 | 186 | 413 | 96 | 306 | 3.56e-15 | 75.9 |
| Msa0511120 | MtrunA17_Chr4g0056661 | 24.116 | 311 | 205 | 7 | 118 | 417 | 60 | 350 | 2.21e-13 | 70.9 |
| Msa0511120 | MtrunA17_Chr2g0307091 | 23.009 | 339 | 218 | 9 | 100 | 421 | 2 | 314 | 5.55e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511120 | AT5G33320.1 | 66.125 | 431 | 113 | 8 | 1 | 421 | 1 | 408 | 0.0 | 519 |
| Msa0511120 | AT3G01550.1 | 60.831 | 337 | 114 | 3 | 87 | 418 | 55 | 378 | 3.55e-133 | 388 |
| Msa0511120 | AT3G01550.2 | 59.644 | 337 | 113 | 4 | 87 | 418 | 55 | 373 | 6.72e-127 | 372 |
| Msa0511120 | AT5G17630.1 | 39.118 | 363 | 192 | 7 | 63 | 417 | 67 | 408 | 2.20e-72 | 233 |
| Msa0511120 | AT5G54800.1 | 40.483 | 331 | 173 | 4 | 90 | 412 | 73 | 387 | 1.17e-66 | 218 |
| Msa0511120 | AT1G61800.1 | 39.437 | 355 | 185 | 6 | 65 | 413 | 58 | 388 | 6.17e-65 | 213 |
| Msa0511120 | AT1G61800.2 | 39.437 | 355 | 185 | 6 | 65 | 413 | 58 | 388 | 1.47e-64 | 213 |
| Msa0511120 | AT5G46110.1 | 34.316 | 373 | 207 | 8 | 68 | 421 | 54 | 407 | 9.71e-62 | 205 |
| Msa0511120 | AT5G46110.4 | 34.501 | 371 | 205 | 8 | 68 | 419 | 54 | 405 | 1.06e-61 | 205 |
| Msa0511120 | AT5G46110.2 | 37.621 | 311 | 167 | 7 | 117 | 419 | 1 | 292 | 7.95e-60 | 197 |
| Msa0511120 | AT5G46110.3 | 33.244 | 373 | 200 | 9 | 68 | 421 | 54 | 396 | 2.69e-56 | 191 |
| Msa0511120 | AT1G21870.1 | 28.399 | 331 | 190 | 12 | 104 | 419 | 15 | 313 | 1.68e-23 | 100 |
| Msa0511120 | AT4G03950.1 | 28.889 | 315 | 153 | 12 | 104 | 415 | 11 | 257 | 5.84e-23 | 98.2 |
| Msa0511120 | AT1G77610.1 | 27.190 | 331 | 204 | 11 | 97 | 417 | 2 | 305 | 1.55e-21 | 95.5 |
| Msa0511120 | AT3G10290.1 | 25.000 | 316 | 211 | 4 | 107 | 413 | 54 | 352 | 6.58e-21 | 94.0 |
| Msa0511120 | AT5G04160.1 | 26.316 | 323 | 208 | 6 | 102 | 413 | 3 | 306 | 2.15e-19 | 88.6 |
| Msa0511120 | AT3G11320.1 | 26.214 | 309 | 201 | 8 | 118 | 417 | 18 | 308 | 1.95e-18 | 85.9 |
| Msa0511120 | AT5G05820.1 | 26.230 | 305 | 199 | 7 | 118 | 413 | 18 | 305 | 2.78e-18 | 85.5 |
| Msa0511120 | AT1G43310.1 | 74.468 | 47 | 12 | 0 | 218 | 264 | 41 | 87 | 1.48e-17 | 77.8 |
| Msa0511120 | AT1G12500.1 | 25.385 | 260 | 170 | 5 | 161 | 417 | 118 | 356 | 2.45e-14 | 74.3 |
| Msa0511120 | AT4G32390.1 | 22.714 | 339 | 227 | 9 | 96 | 421 | 2 | 318 | 7.26e-11 | 63.9 |
| Msa0511120 | AT5G11230.1 | 23.100 | 329 | 220 | 8 | 96 | 412 | 2 | 309 | 8.74e-11 | 63.5 |
Find 150 sgRNAs with CRISPR-Local
Find 391 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGATCCTTGTTCGGTTTA+TGG | 0.127694 | 3_4:+60443528 | Msa0511120:CDS |
| ATTCAGAATTTGTAGCTATT+TGG | 0.193269 | 3_4:-60448174 | None:intergenic |
| GCGGAGTCACCAGCGCTTTC+GGG | 0.195666 | 3_4:-60443470 | None:intergenic |
| GAAGGCTGTGGACTGCATTT+TGG | 0.267902 | 3_4:-60443192 | None:intergenic |
| GGCGGAGTCACCAGCGCTTT+CGG | 0.269788 | 3_4:-60443471 | None:intergenic |
| GTCTCTCCTGTGAATGCTTT+TGG | 0.293260 | 3_4:+60447942 | Msa0511120:CDS |
| CTCGCTATTGTGCATACTTT+GGG | 0.297295 | 3_4:+60444070 | Msa0511120:CDS |
| GTCGTTGTTGTTAGATGATT+TGG | 0.302177 | 3_4:-60443291 | None:intergenic |
| CAAATTCTGAATTTATTTGT+AGG | 0.303251 | 3_4:+60448185 | Msa0511120:three_prime_UTR |
| TGAACTACAGTCACGGTTAC+AGG | 0.306882 | 3_4:-60443752 | None:intergenic |
| TTGCCGACGGAATGGGTAAC+AGG | 0.314706 | 3_4:-60447864 | None:intergenic |
| TTGTAGGTGAGATAGGAATA+TGG | 0.317006 | 3_4:+60448201 | Msa0511120:three_prime_UTR |
| TGGGGTTGGTGTGGAGAGGG+AGG | 0.317556 | 3_4:-60443229 | None:intergenic |
| TGGTGTGGAGAGGGAGGGTA+GGG | 0.320081 | 3_4:-60443223 | None:intergenic |
| CGGCGGAGAGACGGAGGTTA+AGG | 0.320918 | 3_4:-60443268 | None:intergenic |
| AATTTATTTGTAGGTGAGAT+AGG | 0.325683 | 3_4:+60448194 | Msa0511120:three_prime_UTR |
| ATCCTTTCTGCAATGTTCCT+TGG | 0.335342 | 3_4:+60444178 | Msa0511120:CDS |
| ACGTAATGTTCTTAGCAAAA+AGG | 0.346379 | 3_4:+60444949 | Msa0511120:CDS |
| CACCTTTCCAAGACTCATAT+TGG | 0.360488 | 3_4:-60444104 | None:intergenic |
| ATTTGTAATAATTTATATAC+AGG | 0.369573 | 3_4:-60448540 | None:intergenic |
| TCTCGTTTGTTAAAGTTGAT+AGG | 0.371226 | 3_4:+60445223 | Msa0511120:CDS |
| CTTCAGCTTGGATCCTTGTT+CGG | 0.377633 | 3_4:+60443521 | Msa0511120:CDS |
| CCCTCACCAAACATTGTTGC+TGG | 0.382642 | 3_4:+60443032 | Msa0511120:five_prime_UTR |
| ACTCGCTATTGTGCATACTT+TGG | 0.384453 | 3_4:+60444069 | Msa0511120:CDS |
| AAATCTCAATGTTGTTTAAG+TGG | 0.395765 | 3_4:-60443126 | None:intergenic |
| TTGGTGTGGAGAGGGAGGGT+AGG | 0.399116 | 3_4:-60443224 | None:intergenic |
| TTGTTTCTTTCAGGAATCAT+TGG | 0.401238 | 3_4:+60445083 | Msa0511120:intron |
| TATGTCATCATAATCTGTTT+TGG | 0.401392 | 3_4:+60448421 | Msa0511120:three_prime_UTR |
| CCGCCACCAGCAACAATGTT+TGG | 0.409290 | 3_4:-60443038 | None:intergenic |
| CTGTTCTTGTAACCTTTATG+TGG | 0.412077 | 3_4:+60443789 | Msa0511120:CDS |
| CTTCAATATTTACAACAAAC+AGG | 0.414806 | 3_4:+60443568 | Msa0511120:CDS |
| AGGCCTACACCCTGGGTGAT+TGG | 0.426673 | 3_4:+60444697 | Msa0511120:CDS |
| TGTAGGTGAGATAGGAATAT+GGG | 0.427352 | 3_4:+60448202 | Msa0511120:three_prime_UTR |
| TTACTGAAGCCTCTTTCAAT+TGG | 0.432373 | 3_4:+60444761 | Msa0511120:CDS |
| AGGGAGCGTCTGAAACGGTT+GGG | 0.432953 | 3_4:-60443248 | None:intergenic |
| AGCGCTTTCGGGGACGGAAG+TGG | 0.442160 | 3_4:-60443459 | None:intergenic |
| GGTTCACTCGTGCCTATTGT+TGG | 0.445657 | 3_4:+60444718 | Msa0511120:CDS |
| ACAGCAGATTGCAGGTAAGC+AGG | 0.445859 | 3_4:-60445195 | None:intergenic |
| AGATACTCACAGCAGATTGC+AGG | 0.447914 | 3_4:-60445203 | None:intergenic |
| AGTGCAACTCCACCAACAAT+AGG | 0.455372 | 3_4:-60444730 | None:intergenic |
| GAGTGCAGCAAGAAGAGATC+TGG | 0.457303 | 3_4:-60445348 | None:intergenic |
| ATCTGAAACGGAAACGGAAA+CGG | 0.460375 | 3_4:-60443167 | None:intergenic |
| CTTCATTCACTCGTCAATCA+TGG | 0.462555 | 3_4:+60443354 | Msa0511120:CDS |
| AAGTTATTCTGCTTGGTGAT+TGG | 0.464588 | 3_4:+60448463 | Msa0511120:three_prime_UTR |
| GAATTTGAAAGAAGAGGAAG+AGG | 0.466601 | 3_4:-60443390 | None:intergenic |
| CACACAATTGCCGACGGAAT+GGG | 0.466624 | 3_4:-60447871 | None:intergenic |
| TTCTGCAATGTTCCTTGGAG+AGG | 0.467903 | 3_4:+60444183 | Msa0511120:CDS |
| GGTGTGGAGAGGGAGGGTAG+GGG | 0.472217 | 3_4:-60443222 | None:intergenic |
| TAGATTTAGAGCCCACATAA+AGG | 0.472384 | 3_4:-60443801 | None:intergenic |
| GGCGGAGAGACGGAGGTTAA+GGG | 0.474532 | 3_4:-60443267 | None:intergenic |
| TGCTAAGAACATTACGTGAC+TGG | 0.485983 | 3_4:-60444943 | None:intergenic |
| TGATAGGATTGTTGTATCAC+AGG | 0.486171 | 3_4:+60445239 | Msa0511120:CDS |
| TTGGAGATCTGAAACGGAAA+CGG | 0.489875 | 3_4:-60443173 | None:intergenic |
| GTCACCAGCGCTTTCGGGGA+CGG | 0.490017 | 3_4:-60443465 | None:intergenic |
| CAGATCTTACCAATTGAAAG+AGG | 0.491870 | 3_4:-60444770 | None:intergenic |
| ACTGTAGTTCAATTTGCTGT+TGG | 0.493045 | 3_4:+60443764 | Msa0511120:CDS |
| GAGGGTAGGGGAGAGAGTGA+AGG | 0.493247 | 3_4:-60443210 | None:intergenic |
| TCACACAATTGCCGACGGAA+TGG | 0.493383 | 3_4:-60447872 | None:intergenic |
| CCAAACATTGTTGCTGGTGG+CGG | 0.495853 | 3_4:+60443038 | Msa0511120:five_prime_UTR |
| GGGGTTGGTGTGGAGAGGGA+GGG | 0.496153 | 3_4:-60443228 | None:intergenic |
| TACTCACACAATTAAAGCTA+TGG | 0.496545 | 3_4:+60444138 | Msa0511120:CDS |
| GCGTCTGAAACGGTTGGGGT+TGG | 0.501064 | 3_4:-60443243 | None:intergenic |
| CAGCAGATTGCAGGTAAGCA+GGG | 0.503249 | 3_4:-60445194 | None:intergenic |
| GAAAGTGAGTCTCTCCTATC+GGG | 0.504719 | 3_4:-60443104 | None:intergenic |
| TGTTCTTGTAACCTTTATGT+GGG | 0.507076 | 3_4:+60443790 | Msa0511120:CDS |
| TATTGTTGGTGGAGTTGCAC+TGG | 0.508448 | 3_4:+60444732 | Msa0511120:CDS |
| GGTTGGGGTTGGTGTGGAGA+GGG | 0.509075 | 3_4:-60443232 | None:intergenic |
| AGCTCCCGCAGCTATCTTCA+TGG | 0.509736 | 3_4:+60445155 | Msa0511120:CDS |
| GATAATGTGTGGCATGGCAT+GGG | 0.510507 | 3_4:-60448243 | None:intergenic |
| TCGGGGACGGAAGTGGCTTG+AGG | 0.514782 | 3_4:-60443452 | None:intergenic |
| GGTACCGCTATAGCTCTTGC+TGG | 0.518540 | 3_4:+60448057 | Msa0511120:intron |
| CGGTTGGGGTTGGTGTGGAG+AGG | 0.521702 | 3_4:-60443233 | None:intergenic |
| ACGGAAACGGAAACGGAAGA+TGG | 0.522137 | 3_4:-60443160 | None:intergenic |
| AGGTCTGAATTTGAAAGAAG+AGG | 0.522741 | 3_4:-60443396 | None:intergenic |
| AAAGCATTCACAGGAGAGAC+AGG | 0.525906 | 3_4:-60447939 | None:intergenic |
| GGATAATGTGTGGCATGGCA+TGG | 0.529645 | 3_4:-60448244 | None:intergenic |
| GAAGTAGGAACAAGAGGAAG+AGG | 0.529831 | 3_4:-60443416 | None:intergenic |
| ACAATGCAAGTTATTCTGCT+TGG | 0.529975 | 3_4:+60448456 | Msa0511120:three_prime_UTR |
| CACCAATATGAGTCTTGGAA+AGG | 0.530315 | 3_4:+60444102 | Msa0511120:CDS |
| GGCTTGAGGAGGAGAAAGAT+CGG | 0.533503 | 3_4:-60443438 | None:intergenic |
| TACAAGAGGCCTAAAATCAC+TGG | 0.538197 | 3_4:+60443824 | Msa0511120:CDS |
| TGCTGGTGGCGGACTACACG+AGG | 0.541795 | 3_4:+60443049 | Msa0511120:five_prime_UTR |
| CTTCAAAACACTCGCCCGAT+AGG | 0.546185 | 3_4:+60443090 | Msa0511120:five_prime_UTR |
| TTCTTACATGATATTGCAGA+GGG | 0.548286 | 3_4:+60447836 | Msa0511120:CDS |
| TTGAAAGAAGAGGAAGAGGA+AGG | 0.548852 | 3_4:-60443386 | None:intergenic |
| AACTCACTTGCTGATACGCA+TGG | 0.548949 | 3_4:-60445376 | None:intergenic |
| GGAAAGTGAGTCTCTCCTAT+CGG | 0.550538 | 3_4:-60443105 | None:intergenic |
| AGATCGGAAGTAGGAACAAG+AGG | 0.551121 | 3_4:-60443422 | None:intergenic |
| GCATGGCATGGGGTCAAGAA+AGG | 0.552207 | 3_4:-60448232 | None:intergenic |
| AGAGGAAGAGGAAGGAGACA+TGG | 0.552637 | 3_4:-60443378 | None:intergenic |
| CCCTCCATGAAGATAGCTGC+GGG | 0.553556 | 3_4:-60445159 | None:intergenic |
| GGAGGAGAAAGATCGGAAGT+AGG | 0.554082 | 3_4:-60443431 | None:intergenic |
| GGGAGCGTCTGAAACGGTTG+GGG | 0.557883 | 3_4:-60443247 | None:intergenic |
| ATGATTTGGCGGCGGAGAGA+CGG | 0.559649 | 3_4:-60443277 | None:intergenic |
| TGCCGACGGAATGGGTAACA+GGG | 0.564452 | 3_4:-60447863 | None:intergenic |
| ACTTCCGTCCCCGAAAGCGC+TGG | 0.564558 | 3_4:+60443461 | Msa0511120:CDS |
| TCTTTACCAAAAGCATTCAC+AGG | 0.565255 | 3_4:-60447948 | None:intergenic |
| TCACTCGTGCCTATTGTTGG+TGG | 0.566205 | 3_4:+60444721 | Msa0511120:CDS |
| AAGGGAGCGTCTGAAACGGT+TGG | 0.567588 | 3_4:-60443249 | None:intergenic |
| CTAACAGAGGCCTACACCCT+GGG | 0.568546 | 3_4:+60444690 | Msa0511120:intron |
| GGCTGGATTTGCGAGTGCAA+TGG | 0.570606 | 3_4:+60444904 | Msa0511120:CDS |
| GAACCAATCACCCAGGGTGT+AGG | 0.571373 | 3_4:-60444700 | None:intergenic |
| TCTAACAGAGGCCTACACCC+TGG | 0.571500 | 3_4:+60444689 | Msa0511120:intron |
| CAATATGAGTCTTGGAAAGG+TGG | 0.571553 | 3_4:+60444105 | Msa0511120:CDS |
| ACAATGTTTGGTGAGGGAGT+TGG | 0.573594 | 3_4:-60443026 | None:intergenic |
| AAAGGTCATGGTTAAGCAAG+AGG | 0.575123 | 3_4:+60444967 | Msa0511120:CDS |
| TCCCCTGTTACCCATTCCGT+CGG | 0.576931 | 3_4:+60447861 | Msa0511120:CDS |
| GTTGTTGTTAGATGATTTGG+CGG | 0.577181 | 3_4:-60443288 | None:intergenic |
| GAAAGGATGACAGAAAAGAA+AGG | 0.577210 | 3_4:-60444163 | None:intergenic |
| AGGGGAGAGAGTGAAGGCTG+TGG | 0.579441 | 3_4:-60443204 | None:intergenic |
| TATTGAAGTAGATGTTGAAG+AGG | 0.581047 | 3_4:-60443553 | None:intergenic |
| TCGCTATTGTGCATACTTTG+GGG | 0.588012 | 3_4:+60444071 | Msa0511120:CDS |
| GAACTACAGTCACGGTTACA+GGG | 0.591540 | 3_4:-60443751 | None:intergenic |
| AACGACGGCGTAAATCTCAA+TGG | 0.595180 | 3_4:+60443308 | Msa0511120:CDS |
| TGAAACGGTTGGGGTTGGTG+TGG | 0.596713 | 3_4:-60443238 | None:intergenic |
| GGTTAAGGGAGCGTCTGAAA+CGG | 0.598374 | 3_4:-60443253 | None:intergenic |
| GGGACGGAAGTGGCTTGAGG+AGG | 0.601394 | 3_4:-60443449 | None:intergenic |
| CTCCAAGGAACATTGCAGAA+AGG | 0.601742 | 3_4:-60444180 | None:intergenic |
| ACGTGACTGGTTTGTCACAT+TGG | 0.602709 | 3_4:-60444930 | None:intergenic |
| ACCAGCAACAATGTTTGGTG+AGG | 0.604584 | 3_4:-60443033 | None:intergenic |
| AGCAAATTGAACTACAGTCA+CGG | 0.606377 | 3_4:-60443759 | None:intergenic |
| CCCGCAGCTATCTTCATGGA+GGG | 0.610657 | 3_4:+60445159 | Msa0511120:CDS |
| TTTCTTACATGATATTGCAG+AGG | 0.611685 | 3_4:+60447835 | Msa0511120:CDS |
| TCACCAAACATTGTTGCTGG+TGG | 0.614402 | 3_4:+60443035 | Msa0511120:five_prime_UTR |
| GTTGTTAGATGATTTGGCGG+CGG | 0.614664 | 3_4:-60443285 | None:intergenic |
| CGGAGTCACCAGCGCTTTCG+GGG | 0.619544 | 3_4:-60443469 | None:intergenic |
| ATCAAAATCACACCTTCATG+TGG | 0.627621 | 3_4:-60448376 | None:intergenic |
| TTAGCACTCTAACCTCTCCA+AGG | 0.630079 | 3_4:-60444195 | None:intergenic |
| TCCCGCAGCTATCTTCATGG+AGG | 0.630179 | 3_4:+60445158 | Msa0511120:CDS |
| CAATTGTGTGAAGCGTGTTG+TGG | 0.634531 | 3_4:+60447884 | Msa0511120:CDS |
| ATTTGGCGGCGGAGAGACGG+AGG | 0.634566 | 3_4:-60443274 | None:intergenic |
| AACACCAGCAAGAGCTATAG+CGG | 0.635112 | 3_4:-60448061 | None:intergenic |
| CCAGCAACAATGTTTGGTGA+GGG | 0.637781 | 3_4:-60443032 | None:intergenic |
| AAAGTATGCACAATAGCGAG+TGG | 0.638254 | 3_4:-60444067 | None:intergenic |
| GAGGTACCATAAACCGAACA+AGG | 0.639078 | 3_4:-60443534 | None:intergenic |
| AGCAGATTGCAGGTAAGCAG+GGG | 0.639869 | 3_4:-60445193 | None:intergenic |
| CACGAGTGAACCAATCACCC+AGG | 0.642426 | 3_4:-60444707 | None:intergenic |
| GTAGGTGAGATAGGAATATG+GGG | 0.645517 | 3_4:+60448203 | Msa0511120:three_prime_UTR |
| AAAATGGATAATGTGTGGCA+TGG | 0.646505 | 3_4:-60448249 | None:intergenic |
| GGGCTCTAAATCTATACAAG+AGG | 0.650564 | 3_4:+60443810 | Msa0511120:CDS |
| ACGCTTCACACAATTGCCGA+CGG | 0.667607 | 3_4:-60447877 | None:intergenic |
| ACCCTCCATGAAGATAGCTG+CGG | 0.681078 | 3_4:-60445160 | None:intergenic |
| ATAATGTGTGGCATGGCATG+GGG | 0.684494 | 3_4:-60448242 | None:intergenic |
| ACGAGTGAACCAATCACCCA+GGG | 0.685336 | 3_4:-60444706 | None:intergenic |
| GCCGACGGAATGGGTAACAG+GGG | 0.690384 | 3_4:-60447862 | None:intergenic |
| CAACGAACTAGACTCGGCGG+CGG | 0.699628 | 3_4:-60443489 | None:intergenic |
| AAATCATCTAACAACAACGA+CGG | 0.712539 | 3_4:+60443293 | Msa0511120:CDS |
| GCTGGTGGCGGACTACACGA+GGG | 0.719767 | 3_4:+60443050 | Msa0511120:five_prime_UTR |
| AGACATAATTGAAATCCACA+TGG | 0.736794 | 3_4:-60448290 | None:intergenic |
| TAGCAACGAACTAGACTCGG+CGG | 0.750243 | 3_4:-60443492 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GCTAATTTTTTTTTTTTTTT+TGG | + | chr3_4:60444213-60444232 | Msa0511120:intron | 10.0% |
| !!! | GTTTTTTGTTTATTTTAAAA+AGG | - | chr3_4:60446047-60446066 | None:intergenic | 10.0% |
| !!! | AAGGTATTATTATTTATAAA+AGG | - | chr3_4:60446791-60446810 | None:intergenic | 10.0% |
| !!! | TTTTTAAATCACATTATAAA+AGG | - | chr3_4:60446815-60446834 | None:intergenic | 10.0% |
| !!! | TAAATTTTGAGTAATATTTA+AGG | + | chr3_4:60447142-60447161 | Msa0511120:intron | 10.0% |
| !!! | ACTATTTTTTAAGAAAAAAA+TGG | - | chr3_4:60448268-60448287 | None:intergenic | 10.0% |
| !! | ATTTGTAATAATTTATATAC+AGG | - | chr3_4:60448543-60448562 | None:intergenic | 10.0% |
| !! | TCTTATTCTCAAATTATTAT+GGG | - | chr3_4:60443952-60443971 | None:intergenic | 15.0% |
| !! | TACAAAATATTAACAAATAG+CGG | - | chr3_4:60444519-60444538 | None:intergenic | 15.0% |
| !! | TTATTATTTATAAAAGGCAA+AGG | - | chr3_4:60446785-60446804 | None:intergenic | 15.0% |
| !!! | GTTTTTTTTTTTGTATAGTA+TGG | + | chr3_4:60447172-60447191 | Msa0511120:intron | 15.0% |
| !! | AAAAAAATATAATGAGTGAA+GGG | - | chr3_4:60448034-60448053 | None:intergenic | 15.0% |
| !! | TAAAAAAATATAATGAGTGA+AGG | - | chr3_4:60448035-60448054 | None:intergenic | 15.0% |
| !!! | CACTCATTATATTTTTTTAT+AGG | + | chr3_4:60448036-60448055 | Msa0511120:intron | 15.0% |
| !!! | AGAGTATTTTATTTTCAATG+TGG | + | chr3_4:60443692-60443711 | Msa0511120:intron | 20.0% |
| !!! | GTCTTATTCTCAAATTATTA+TGG | - | chr3_4:60443953-60443972 | None:intergenic | 20.0% |
| !! | GAACAAGATTAAATTTAAAC+TGG | - | chr3_4:60444322-60444341 | None:intergenic | 20.0% |
| !!! | ACTCTTTTGATATATTTCTA+TGG | + | chr3_4:60444433-60444452 | Msa0511120:intron | 20.0% |
| !! | AATACATTTGATGTATTCTA+AGG | + | chr3_4:60444628-60444647 | Msa0511120:intron | 20.0% |
| !!! | ATTCCTTTAAAGAAAATAGA+GGG | - | chr3_4:60445441-60445460 | None:intergenic | 20.0% |
| !! | TGTGAAATTGAAATTCTAAA+AGG | - | chr3_4:60445686-60445705 | None:intergenic | 20.0% |
| !! | AATTGAGATGAAATAAATGA+GGG | - | chr3_4:60445732-60445751 | None:intergenic | 20.0% |
| !!! | TTTAAATTTTAATGAACGTC+AGG | + | chr3_4:60445977-60445996 | Msa0511120:intron | 20.0% |
| !! | AAGGAAGATATTTAGTATTT+GGG | - | chr3_4:60446601-60446620 | None:intergenic | 20.0% |
| !! | AAAGGAAGATATTTAGTATT+TGG | - | chr3_4:60446602-60446621 | None:intergenic | 20.0% |
| !!! | TAGTGTTTTATAAAAGGAAA+AGG | - | chr3_4:60446620-60446639 | None:intergenic | 20.0% |
| !!! | AGTGTATAGTGTTTTATAAA+AGG | - | chr3_4:60446626-60446645 | None:intergenic | 20.0% |
| !! | AATAAAAAGAATGCAAAGTA+TGG | - | chr3_4:60446914-60446933 | None:intergenic | 20.0% |
| !!! | GCGGTATATAATATTTTTTT+TGG | - | chr3_4:60447057-60447076 | None:intergenic | 20.0% |
| !!! | AGTAATATTTTTCTGTGAAT+GGG | + | chr3_4:60447804-60447823 | Msa0511120:intron | 20.0% |
| !! | CAAATTCTGAATTTATTTGT+AGG | + | chr3_4:60448185-60448204 | Msa0511120:three_prime_UTR | 20.0% |
| !!! | ATATGAGAAAAATTCTAAAG+AGG | - | chr3_4:60448355-60448374 | None:intergenic | 20.0% |
| !! | AAATCTCAATGTTGTTTAAG+TGG | - | chr3_4:60443129-60443148 | None:intergenic | 25.0% |
| ! | CTTCAATATTTACAACAAAC+AGG | + | chr3_4:60443568-60443587 | Msa0511120:CDS | 25.0% |
| ! | TTGAGTTATACTATGAAACA+CGG | + | chr3_4:60443898-60443917 | Msa0511120:intron | 25.0% |
| ! | AACACATAACATCTAATTGA+AGG | - | chr3_4:60444002-60444021 | None:intergenic | 25.0% |
| ! | TTTATTCATATTCCGCTATA+TGG | + | chr3_4:60444493-60444512 | Msa0511120:intron | 25.0% |
| !!! | TCTAGCTTTTGTATTGTAAT+TGG | + | chr3_4:60444598-60444617 | Msa0511120:intron | 25.0% |
| !! | TGGTTTGTAAAGAAAAGATT+CGG | + | chr3_4:60444837-60444856 | Msa0511120:intron | 25.0% |
| ! | TGAATTCTAATATGCTTTGA+TGG | + | chr3_4:60444869-60444888 | Msa0511120:intron | 25.0% |
| !!! | CTTTGATGGATTATTGAATA+GGG | + | chr3_4:60444883-60444902 | Msa0511120:intron | 25.0% |
| ! | CATAAAATGTCTTCTTGAAT+GGG | - | chr3_4:60445023-60445042 | None:intergenic | 25.0% |
| ! | TCATAAAATGTCTTCTTGAA+TGG | - | chr3_4:60445024-60445043 | None:intergenic | 25.0% |
| !!! | ACAATGATTTTGTTTCTTTC+AGG | + | chr3_4:60445074-60445093 | Msa0511120:intron | 25.0% |
| ! | TATACATTATCTTTCTTGAC+AGG | + | chr3_4:60445301-60445320 | Msa0511120:intron | 25.0% |
| ! | ATACATTATCTTTCTTGACA+GGG | + | chr3_4:60445302-60445321 | Msa0511120:intron | 25.0% |
| !! | CATTCCTTTAAAGAAAATAG+AGG | - | chr3_4:60445442-60445461 | None:intergenic | 25.0% |
| ! | GCATGTTATAAAACATTTCA+CGG | - | chr3_4:60445606-60445625 | None:intergenic | 25.0% |
| ! | GAATTGAGATGAAATAAATG+AGG | - | chr3_4:60445733-60445752 | None:intergenic | 25.0% |
| ! | TACTTAAGCAACACTTAAAT+TGG | + | chr3_4:60445853-60445872 | Msa0511120:intron | 25.0% |
| ! | ACTTAAGCAACACTTAAATT+GGG | + | chr3_4:60445854-60445873 | Msa0511120:intron | 25.0% |
| ! | AAATCACATTATAAAAGGCA+AGG | - | chr3_4:60446810-60446829 | None:intergenic | 25.0% |
| !! | TTTTATTGTGTTTATGTGTG+TGG | - | chr3_4:60446840-60446859 | None:intergenic | 25.0% |
| !!! | TATTTTTTTTGGTTACTCAG+CGG | - | chr3_4:60447046-60447065 | None:intergenic | 25.0% |
| ! | AAATATTATATACCGCTGTA+AGG | + | chr3_4:60447061-60447080 | Msa0511120:intron | 25.0% |
| ! | TTGAATAAAAATCCTTACAG+CGG | - | chr3_4:60447076-60447095 | None:intergenic | 25.0% |
| !!! | TCAATTTTGTCTAAAACTTG+TGG | + | chr3_4:60447092-60447111 | Msa0511120:intron | 25.0% |
| ! | TACTTCATAAGATAATCTAC+AGG | - | chr3_4:60447631-60447650 | None:intergenic | 25.0% |
| ! | ATATTACTCTTTCATTGCAT+TGG | - | chr3_4:60447792-60447811 | None:intergenic | 25.0% |
| !! | GAGTAATATTTTTCTGTGAA+TGG | + | chr3_4:60447803-60447822 | Msa0511120:intron | 25.0% |
| !!! | TTTTAAAACTAAGCTGTCTT+TGG | - | chr3_4:60448123-60448142 | None:intergenic | 25.0% |
| !!! | AAGACAGCTTAGTTTTAAAA+TGG | + | chr3_4:60448123-60448142 | Msa0511120:exon | 25.0% |
| ! | ATTCAGAATTTGTAGCTATT+TGG | - | chr3_4:60448177-60448196 | None:intergenic | 25.0% |
| ! | AATTTATTTGTAGGTGAGAT+AGG | + | chr3_4:60448194-60448213 | Msa0511120:three_prime_UTR | 25.0% |
| ! | AGAAAAAAATGGATAATGTG+TGG | - | chr3_4:60448257-60448276 | None:intergenic | 25.0% |
| ! | CTTAAAAAATAGTTACCATG+TGG | + | chr3_4:60448275-60448294 | Msa0511120:three_prime_UTR | 25.0% |
| !! | TAAAGAGGACAACATTTTAA+CGG | - | chr3_4:60448340-60448359 | None:intergenic | 25.0% |
| !! | TATGTCATCATAATCTGTTT+TGG | + | chr3_4:60448421-60448440 | Msa0511120:three_prime_UTR | 25.0% |
| AAATCATCTAACAACAACGA+CGG | + | chr3_4:60443293-60443312 | Msa0511120:CDS | 30.0% | |
| TATTGAAGTAGATGTTGAAG+AGG | - | chr3_4:60443556-60443575 | None:intergenic | 30.0% | |
| GAGAAAATAGATCTCATGAA+AGG | - | chr3_4:60443609-60443628 | None:intergenic | 30.0% | |
| ! | TATGTTTTGTGTTTTCGCAA+CGG | + | chr3_4:60443666-60443685 | Msa0511120:intron | 30.0% |
| TGTTCTTGTAACCTTTATGT+GGG | + | chr3_4:60443790-60443809 | Msa0511120:CDS | 30.0% | |
| AAAGAGAGAAGAAAATACCA+TGG | - | chr3_4:60443852-60443871 | None:intergenic | 30.0% | |
| TCAATGTTTGTGTAACTGTA+TGG | - | chr3_4:60443927-60443946 | None:intergenic | 30.0% | |
| TACTCACACAATTAAAGCTA+TGG | + | chr3_4:60444138-60444157 | Msa0511120:CDS | 30.0% | |
| AGACTAATTACAGTAACCAA+TGG | - | chr3_4:60444255-60444274 | None:intergenic | 30.0% | |
| TTGTTCAAATTCTGCTATGA+TGG | + | chr3_4:60444569-60444588 | Msa0511120:intron | 30.0% | |
| TCTGTTAGAAATCGAAACAA+TGG | - | chr3_4:60444678-60444697 | None:intergenic | 30.0% | |
| ATTGTTTCGATTTCTAACAG+AGG | + | chr3_4:60444677-60444696 | Msa0511120:intron | 30.0% | |
| !! | GCTTTGATGGATTATTGAAT+AGG | + | chr3_4:60444882-60444901 | Msa0511120:intron | 30.0% |
| ACGTAATGTTCTTAGCAAAA+AGG | + | chr3_4:60444949-60444968 | Msa0511120:CDS | 30.0% | |
| ! | TTGTTTCTTTCAGGAATCAT+TGG | + | chr3_4:60445083-60445102 | Msa0511120:intron | 30.0% |
| ! | TCTCGTTTGTTAAAGTTGAT+AGG | + | chr3_4:60445223-60445242 | Msa0511120:CDS | 30.0% |
| TACATTATCTTTCTTGACAG+GGG | + | chr3_4:60445303-60445322 | Msa0511120:intron | 30.0% | |
| !! | TTTTTCTGTTCTAGTCTTCT+AGG | + | chr3_4:60445404-60445423 | Msa0511120:intron | 30.0% |
| ! | TGTCCCTCTATTTTCTTTAA+AGG | + | chr3_4:60445435-60445454 | Msa0511120:intron | 30.0% |
| GACAAAGAACTATAAGCAAA+AGG | - | chr3_4:60445508-60445527 | None:intergenic | 30.0% | |
| TGCTTATAGTTCTTTGTCTT+TGG | + | chr3_4:60445510-60445529 | Msa0511120:intron | 30.0% | |
| CTTAAGCAACACTTAAATTG+GGG | + | chr3_4:60445855-60445874 | Msa0511120:intron | 30.0% | |
| ! | GAGTAATAGAGTACACTTTT+AGG | + | chr3_4:60445891-60445910 | Msa0511120:intron | 30.0% |
| ! | CTCGACTATAAATTTGCTTT+AGG | - | chr3_4:60446024-60446043 | None:intergenic | 30.0% |
| !!! | TTTTTTCACCCTAAACTTTG+AGG | + | chr3_4:60447387-60447406 | Msa0511120:intron | 30.0% |
| !! | GTTCAAAAGTATTCTAACGT+CGG | - | chr3_4:60447560-60447579 | None:intergenic | 30.0% |
| TGCATTGAAAGATAAGGAAA+TGG | - | chr3_4:60447582-60447601 | None:intergenic | 30.0% | |
| ! | ATATGTCAGCATTTCTTTTC+AGG | - | chr3_4:60447695-60447714 | None:intergenic | 30.0% |
| AAAGAAATGCTGACATATGA+AGG | + | chr3_4:60447697-60447716 | Msa0511120:intron | 30.0% | |
| AAGAAATGCTGACATATGAA+GGG | + | chr3_4:60447698-60447717 | Msa0511120:intron | 30.0% | |
| TTTCTTACATGATATTGCAG+AGG | + | chr3_4:60447835-60447854 | Msa0511120:CDS | 30.0% | |
| TTCTTACATGATATTGCAGA+GGG | + | chr3_4:60447836-60447855 | Msa0511120:CDS | 30.0% | |
| AGACATAATTGAAATCCACA+TGG | - | chr3_4:60448293-60448312 | None:intergenic | 30.0% | |
| ! | TTTTCTCATATACCACATGA+AGG | + | chr3_4:60448364-60448383 | Msa0511120:three_prime_UTR | 30.0% |
| !!! | GCGAGTGTTTTGAAGTTTAA+GGG | - | chr3_4:60443085-60443104 | None:intergenic | 35.0% |
| !! | TGCATTTTGGAGATCTGAAA+CGG | - | chr3_4:60443182-60443201 | None:intergenic | 35.0% |
| ! | GTTGTTGTTAGATGATTTGG+CGG | - | chr3_4:60443291-60443310 | None:intergenic | 35.0% |
| ! | GTCGTTGTTGTTAGATGATT+TGG | - | chr3_4:60443294-60443313 | None:intergenic | 35.0% |
| GAATGAAGAAGAAGAAGAAG+AGG | - | chr3_4:60443342-60443361 | None:intergenic | 35.0% | |
| GAATTTGAAAGAAGAGGAAG+AGG | - | chr3_4:60443393-60443412 | None:intergenic | 35.0% | |
| AGGTCTGAATTTGAAAGAAG+AGG | - | chr3_4:60443399-60443418 | None:intergenic | 35.0% | |
| ! | TTTTAGCAACGAACTAGACT+CGG | - | chr3_4:60443498-60443517 | None:intergenic | 35.0% |
| TTGCTAAAAACTCTTCAGCT+TGG | + | chr3_4:60443509-60443528 | Msa0511120:CDS | 35.0% | |
| ! | ATGTGGATTTTCCTTTTTGC+AGG | + | chr3_4:60443709-60443728 | Msa0511120:intron | 35.0% |
| !! | TTCCTTTTTGCAGGTTTTGA+AGG | + | chr3_4:60443718-60443737 | Msa0511120:intron | 35.0% |
| AGCAAATTGAACTACAGTCA+CGG | - | chr3_4:60443762-60443781 | None:intergenic | 35.0% | |
| !! | ACTGTAGTTCAATTTGCTGT+TGG | + | chr3_4:60443764-60443783 | Msa0511120:CDS | 35.0% |
| CTGTTCTTGTAACCTTTATG+TGG | + | chr3_4:60443789-60443808 | Msa0511120:CDS | 35.0% | |
| ! | TAGATTTAGAGCCCACATAA+AGG | - | chr3_4:60443804-60443823 | None:intergenic | 35.0% |
| ! | CTTTTCACCAATATGAGTCT+TGG | + | chr3_4:60444097-60444116 | Msa0511120:CDS | 35.0% |
| GAAAGGATGACAGAAAAGAA+AGG | - | chr3_4:60444166-60444185 | None:intergenic | 35.0% | |
| ! | TGTTGCAATCCATGATTTTG+CGG | + | chr3_4:60444344-60444363 | Msa0511120:intron | 35.0% |
| AAGATTGTAGTGTAACATCG+AGG | - | chr3_4:60444393-60444412 | None:intergenic | 35.0% | |
| TCGATGTTACACTACAATCT+TGG | + | chr3_4:60444392-60444411 | Msa0511120:intron | 35.0% | |
| ! | CTGTGGATTGCATAAAACAA+TGG | + | chr3_4:60444470-60444489 | Msa0511120:intron | 35.0% |
| TTACTGAAGCCTCTTTCAAT+TGG | + | chr3_4:60444761-60444780 | Msa0511120:CDS | 35.0% | |
| CAGATCTTACCAATTGAAAG+AGG | - | chr3_4:60444773-60444792 | None:intergenic | 35.0% | |
| TGTTCTTAGCAAAAAGGTCA+TGG | + | chr3_4:60444955-60444974 | Msa0511120:CDS | 35.0% | |
| GCAAGAGGTAATATGATCTT+TGG | + | chr3_4:60444982-60445001 | Msa0511120:intron | 35.0% | |
| TGATAGGATTGTTGTATCAC+AGG | + | chr3_4:60445239-60445258 | Msa0511120:CDS | 35.0% | |
| GACACTTAAGATGAGAATGA+GGG | - | chr3_4:60445630-60445649 | None:intergenic | 35.0% | |
| TGACACTTAAGATGAGAATG+AGG | - | chr3_4:60445631-60445650 | None:intergenic | 35.0% | |
| !! | ATGAGGGCATTAGTAGAAAA+AGG | - | chr3_4:60445716-60445735 | None:intergenic | 35.0% |
| TTTAGGCCTCTAAACATGTT+GGG | - | chr3_4:60446007-60446026 | None:intergenic | 35.0% | |
| ATCGTATAAAAAGCGAGATC+TGG | + | chr3_4:60446377-60446396 | Msa0511120:intron | 35.0% | |
| AAGGAATGAAGATGAAACCA+AGG | + | chr3_4:60446433-60446452 | Msa0511120:intron | 35.0% | |
| TTAACAGCGATGAAAATCCT+TGG | - | chr3_4:60446453-60446472 | None:intergenic | 35.0% | |
| GATGAAGACTAGGTCAAATA+AGG | + | chr3_4:60446540-60446559 | Msa0511120:intron | 35.0% | |
| AGAAGACTTTATCTCTTGTG+TGG | + | chr3_4:60446573-60446592 | Msa0511120:intron | 35.0% | |
| GAAGACTTTATCTCTTGTGT+GGG | + | chr3_4:60446574-60446593 | Msa0511120:intron | 35.0% | |
| AAGACTTTATCTCTTGTGTG+GGG | + | chr3_4:60446575-60446594 | Msa0511120:intron | 35.0% | |
| GCTTAAGTGTAACATAGGAT+AGG | - | chr3_4:60447469-60447488 | None:intergenic | 35.0% | |
| ATCCTATGTTACACTTAAGC+AGG | + | chr3_4:60447469-60447488 | Msa0511120:intron | 35.0% | |
| TCCTATGTTACACTTAAGCA+GGG | + | chr3_4:60447470-60447489 | Msa0511120:intron | 35.0% | |
| CAACAGTGCATTGAAAGATA+AGG | - | chr3_4:60447588-60447607 | None:intergenic | 35.0% | |
| !!! | TCAGCATTTCTTTTCAGGTT+AGG | - | chr3_4:60447690-60447709 | None:intergenic | 35.0% |
| GACATATGAAGGGAAAATAG+TGG | + | chr3_4:60447708-60447727 | Msa0511120:intron | 35.0% | |
| !! | TCTTTACCAAAAGCATTCAC+AGG | - | chr3_4:60447951-60447970 | None:intergenic | 35.0% |
| TGGTAAAGATTGCTTCTTTC+TGG | + | chr3_4:60447962-60447981 | Msa0511120:intron | 35.0% | |
| ! | TGGTGTTTTCTTCTACTCAA+GGG | + | chr3_4:60448077-60448096 | Msa0511120:CDS | 35.0% |
| TTGTAGGTGAGATAGGAATA+TGG | + | chr3_4:60448201-60448220 | Msa0511120:three_prime_UTR | 35.0% | |
| TGTAGGTGAGATAGGAATAT+GGG | + | chr3_4:60448202-60448221 | Msa0511120:three_prime_UTR | 35.0% | |
| AAAATGGATAATGTGTGGCA+TGG | - | chr3_4:60448252-60448271 | None:intergenic | 35.0% | |
| ATCAAAATCACACCTTCATG+TGG | - | chr3_4:60448379-60448398 | None:intergenic | 35.0% | |
| ACAATGCAAGTTATTCTGCT+TGG | + | chr3_4:60448456-60448475 | Msa0511120:three_prime_UTR | 35.0% | |
| ! | AAGTTATTCTGCTTGGTGAT+TGG | + | chr3_4:60448463-60448482 | Msa0511120:three_prime_UTR | 35.0% |
| !!! | GGCGAGTGTTTTGAAGTTTA+AGG | - | chr3_4:60443086-60443105 | None:intergenic | 40.0% |
| ! | ATCTGAAACGGAAACGGAAA+CGG | - | chr3_4:60443170-60443189 | None:intergenic | 40.0% |
| ! | TTGGAGATCTGAAACGGAAA+CGG | - | chr3_4:60443176-60443195 | None:intergenic | 40.0% |
| CTTCATTCACTCGTCAATCA+TGG | + | chr3_4:60443354-60443373 | Msa0511120:CDS | 40.0% | |
| TTGAAAGAAGAGGAAGAGGA+AGG | - | chr3_4:60443389-60443408 | None:intergenic | 40.0% | |
| TTGGATCCTTGTTCGGTTTA+TGG | + | chr3_4:60443528-60443547 | Msa0511120:CDS | 40.0% | |
| TGCCTTCAAAACCTGCAAAA+AGG | - | chr3_4:60443723-60443742 | None:intergenic | 40.0% | |
| !! | GGGCTCTAAATCTATACAAG+AGG | + | chr3_4:60443810-60443829 | Msa0511120:CDS | 40.0% |
| TACAAGAGGCCTAAAATCAC+TGG | + | chr3_4:60443824-60443843 | Msa0511120:CDS | 40.0% | |
| AAAGTATGCACAATAGCGAG+TGG | - | chr3_4:60444070-60444089 | None:intergenic | 40.0% | |
| ACTCGCTATTGTGCATACTT+TGG | + | chr3_4:60444069-60444088 | Msa0511120:CDS | 40.0% | |
| CTCGCTATTGTGCATACTTT+GGG | + | chr3_4:60444070-60444089 | Msa0511120:CDS | 40.0% | |
| TCGCTATTGTGCATACTTTG+GGG | + | chr3_4:60444071-60444090 | Msa0511120:CDS | 40.0% | |
| CACCAATATGAGTCTTGGAA+AGG | + | chr3_4:60444102-60444121 | Msa0511120:CDS | 40.0% | |
| CACCTTTCCAAGACTCATAT+TGG | - | chr3_4:60444107-60444126 | None:intergenic | 40.0% | |
| CAATATGAGTCTTGGAAAGG+TGG | + | chr3_4:60444105-60444124 | Msa0511120:CDS | 40.0% | |
| ATCCTTTCTGCAATGTTCCT+TGG | + | chr3_4:60444178-60444197 | Msa0511120:CDS | 40.0% | |
| ! | TTTTTCCCGCAATATGCCAT+TGG | + | chr3_4:60444236-60444255 | Msa0511120:intron | 40.0% |
| AGTAACCAATGGCATATTGC+GGG | - | chr3_4:60444244-60444263 | None:intergenic | 40.0% | |
| CAGTAACCAATGGCATATTG+CGG | - | chr3_4:60444245-60444264 | None:intergenic | 40.0% | |
| TGGTACAATGTTGTCAACTG+TGG | + | chr3_4:60444453-60444472 | Msa0511120:intron | 40.0% | |
| AACAAATAGCGGCCATATAG+CGG | - | chr3_4:60444508-60444527 | None:intergenic | 40.0% | |
| !! | GATGGATTATTGAATAGGGC+TGG | + | chr3_4:60444887-60444906 | Msa0511120:intron | 40.0% |
| TGCTAAGAACATTACGTGAC+TGG | - | chr3_4:60444946-60444965 | None:intergenic | 40.0% | |
| AAAGGTCATGGTTAAGCAAG+AGG | + | chr3_4:60444967-60444986 | Msa0511120:CDS | 40.0% | |
| !! | TCTTCTTGAATGGGAGCATT+AGG | - | chr3_4:60445014-60445033 | None:intergenic | 40.0% |
| TTATCTTTCTTGACAGGGGT+TGG | + | chr3_4:60445307-60445326 | Msa0511120:intron | 40.0% | |
| TGAAGTTGCAAGAACCTGAT+AGG | + | chr3_4:60445465-60445484 | Msa0511120:intron | 40.0% | |
| GAAGTTGCAAGAACCTGATA+GGG | + | chr3_4:60445466-60445485 | Msa0511120:intron | 40.0% | |
| AAGTTGCAAGAACCTGATAG+GGG | + | chr3_4:60445467-60445486 | Msa0511120:intron | 40.0% | |
| ! | ATAACTGACTGCTACTTGCT+GGG | + | chr3_4:60445572-60445591 | Msa0511120:intron | 40.0% |
| AAGCAACACTTAAATTGGGG+TGG | + | chr3_4:60445858-60445877 | Msa0511120:intron | 40.0% | |
| ! | TGCTTGCTAGACTAAACTCT+AGG | + | chr3_4:60445939-60445958 | Msa0511120:intron | 40.0% |
| TTGCTAGACTAAACTCTAGG+TGG | + | chr3_4:60445942-60445961 | Msa0511120:intron | 40.0% | |
| TTAGGCCTCTAAACATGTTG+GGG | - | chr3_4:60446006-60446025 | None:intergenic | 40.0% | |
| CTTTAGGCCTCTAAACATGT+TGG | - | chr3_4:60446008-60446027 | None:intergenic | 40.0% | |
| AGCCTCTTGACTAACTAAGT+TGG | + | chr3_4:60446127-60446146 | Msa0511120:intron | 40.0% | |
| GCCTCTTGACTAACTAAGTT+GGG | + | chr3_4:60446128-60446147 | Msa0511120:intron | 40.0% | |
| TCCCAACTTAGTTAGTCAAG+AGG | - | chr3_4:60446132-60446151 | None:intergenic | 40.0% | |
| ! | AAGCCAAAACGACTGTGTTT+TGG | + | chr3_4:60446349-60446368 | Msa0511120:intron | 40.0% |
| !!! | CAAAACGACTGTGTTTTGGT+CGG | + | chr3_4:60446353-60446372 | Msa0511120:intron | 40.0% |
| ATCTGGACAGAGAAGTAGAA+TGG | + | chr3_4:60446394-60446413 | Msa0511120:intron | 40.0% | |
| TCTGGACAGAGAAGTAGAAT+GGG | + | chr3_4:60446395-60446414 | Msa0511120:intron | 40.0% | |
| GTAGAATGGGAAGGAGAAAA+AGG | + | chr3_4:60446408-60446427 | Msa0511120:intron | 40.0% | |
| ! | CTAGTCTTCATCTTCTACCA+TGG | - | chr3_4:60446532-60446551 | None:intergenic | 40.0% |
| CATGGTAGAAGATGAAGACT+AGG | + | chr3_4:60446530-60446549 | Msa0511120:intron | 40.0% | |
| TAGTTGTCAAAGCAGAAACG+CGG | - | chr3_4:60447297-60447316 | None:intergenic | 40.0% | |
| CGTTTCTGCTTTGACAACTA+TGG | + | chr3_4:60447297-60447316 | Msa0511120:intron | 40.0% | |
| TCTGCTTTGACAACTATGGT+TGG | + | chr3_4:60447301-60447320 | Msa0511120:intron | 40.0% | |
| CTGCTTTGACAACTATGGTT+GGG | + | chr3_4:60447302-60447321 | Msa0511120:intron | 40.0% | |
| ACCCTGCTTAAGTGTAACAT+AGG | - | chr3_4:60447474-60447493 | None:intergenic | 40.0% | |
| ! | CAGGTGATTTTCTGTCAAGA+TGG | - | chr3_4:60447612-60447631 | None:intergenic | 40.0% |
| ! | CTGGTGTTTTCTTCTACTCA+AGG | + | chr3_4:60448076-60448095 | Msa0511120:CDS | 40.0% |
| GTAGGTGAGATAGGAATATG+GGG | + | chr3_4:60448203-60448222 | Msa0511120:three_prime_UTR | 40.0% | |
| ! | ACAATGTTTGGTGAGGGAGT+TGG | - | chr3_4:60443029-60443048 | None:intergenic | 45.0% |
| ! | CCAGCAACAATGTTTGGTGA+GGG | - | chr3_4:60443035-60443054 | None:intergenic | 45.0% |
| ! | ACCAGCAACAATGTTTGGTG+AGG | - | chr3_4:60443036-60443055 | None:intergenic | 45.0% |
| TCACCAAACATTGTTGCTGG+TGG | + | chr3_4:60443035-60443054 | Msa0511120:five_prime_UTR | 45.0% | |
| GAAAGTGAGTCTCTCCTATC+GGG | - | chr3_4:60443107-60443126 | None:intergenic | 45.0% | |
| GGAAAGTGAGTCTCTCCTAT+CGG | - | chr3_4:60443108-60443127 | None:intergenic | 45.0% | |
| ! | GTTGTTAGATGATTTGGCGG+CGG | - | chr3_4:60443288-60443307 | None:intergenic | 45.0% |
| AACGACGGCGTAAATCTCAA+TGG | + | chr3_4:60443308-60443327 | Msa0511120:CDS | 45.0% | |
| GAAGTAGGAACAAGAGGAAG+AGG | - | chr3_4:60443419-60443438 | None:intergenic | 45.0% | |
| AGATCGGAAGTAGGAACAAG+AGG | - | chr3_4:60443425-60443444 | None:intergenic | 45.0% | |
| CTTCAGCTTGGATCCTTGTT+CGG | + | chr3_4:60443521-60443540 | Msa0511120:CDS | 45.0% | |
| ! | GAGGTACCATAAACCGAACA+AGG | - | chr3_4:60443537-60443556 | None:intergenic | 45.0% |
| GAACTACAGTCACGGTTACA+GGG | - | chr3_4:60443754-60443773 | None:intergenic | 45.0% | |
| TGAACTACAGTCACGGTTAC+AGG | - | chr3_4:60443755-60443774 | None:intergenic | 45.0% | |
| ! | ACCATGGCACCAGTGATTTT+AGG | - | chr3_4:60443836-60443855 | None:intergenic | 45.0% |
| CTCCAAGGAACATTGCAGAA+AGG | - | chr3_4:60444183-60444202 | None:intergenic | 45.0% | |
| TTCTGCAATGTTCCTTGGAG+AGG | + | chr3_4:60444183-60444202 | Msa0511120:CDS | 45.0% | |
| TTAGCACTCTAACCTCTCCA+AGG | - | chr3_4:60444198-60444217 | None:intergenic | 45.0% | |
| AGTTCGCAACCGCAAAATCA+TGG | - | chr3_4:60444356-60444375 | None:intergenic | 45.0% | |
| ! | ATTTTGCGGTTGCGAACTCA+AGG | + | chr3_4:60444358-60444377 | Msa0511120:intron | 45.0% |
| AGTGCAACTCCACCAACAAT+AGG | - | chr3_4:60444733-60444752 | None:intergenic | 45.0% | |
| ! | TATTGTTGGTGGAGTTGCAC+TGG | + | chr3_4:60444732-60444751 | Msa0511120:CDS | 45.0% |
| ATGTGTCCTGTTCCTTCTAG+AGG | + | chr3_4:60444793-60444812 | Msa0511120:intron | 45.0% | |
| !! | CTTCTAGAGGTAGTGGAGAA+GGG | + | chr3_4:60444806-60444825 | Msa0511120:intron | 45.0% |
| !! | ACGTGACTGGTTTGTCACAT+TGG | - | chr3_4:60444933-60444952 | None:intergenic | 45.0% |
| AGATACTCACAGCAGATTGC+AGG | - | chr3_4:60445206-60445225 | None:intergenic | 45.0% | |
| ! | AACTCACTTGCTGATACGCA+TGG | - | chr3_4:60445379-60445398 | None:intergenic | 45.0% |
| ! | CATAACTGACTGCTACTTGC+TGG | + | chr3_4:60445571-60445590 | Msa0511120:intron | 45.0% |
| TGTACTCTATTACTCCCTCC+AGG | - | chr3_4:60445886-60445905 | None:intergenic | 45.0% | |
| ! | TTGCTGCTCAATGCATTGAC+TGG | + | chr3_4:60445916-60445935 | Msa0511120:intron | 45.0% |
| ATCAAATTCTGCCGAGTCCA+AGG | + | chr3_4:60446086-60446105 | Msa0511120:intron | 45.0% | |
| ACATCTCCCTGTTCAAACCT+TGG | - | chr3_4:60446106-60446125 | None:intergenic | 45.0% | |
| GGGAGCTCTATTGTCAAAAG+CGG | + | chr3_4:60446148-60446167 | Msa0511120:intron | 45.0% | |
| ! | CGACCAAAACACAGTCGTTT+TGG | - | chr3_4:60446355-60446374 | None:intergenic | 45.0% |
| GACAGAGAAGTAGAATGGGA+AGG | + | chr3_4:60446399-60446418 | Msa0511120:intron | 45.0% | |
| TGGGAAGGAGAAAAAGGAGA+AGG | + | chr3_4:60446414-60446433 | Msa0511120:intron | 45.0% | |
| ! | TGTGCATTCTGAGGAAAGGA+AGG | - | chr3_4:60446665-60446684 | None:intergenic | 45.0% |
| TTCCTTTCCTCAGAATGCAC+AGG | + | chr3_4:60446664-60446683 | Msa0511120:intron | 45.0% | |
| ! | TTCCTGTGCATTCTGAGGAA+AGG | - | chr3_4:60446669-60446688 | None:intergenic | 45.0% |
| ACATGTTCCTGTGCATTCTG+AGG | - | chr3_4:60446674-60446693 | None:intergenic | 45.0% | |
| GACTAGGGCCTCAAAGTTTA+GGG | - | chr3_4:60447398-60447417 | None:intergenic | 45.0% | |
| AGACTAGGGCCTCAAAGTTT+AGG | - | chr3_4:60447399-60447418 | None:intergenic | 45.0% | |
| !! | TAAACTTTGAGGCCCTAGTC+TGG | + | chr3_4:60447398-60447417 | Msa0511120:intron | 45.0% |
| !! | AAACTTTGAGGCCCTAGTCT+GGG | + | chr3_4:60447399-60447418 | Msa0511120:intron | 45.0% |
| !! | TTTTCTGTGAATGGGCTTGC+AGG | + | chr3_4:60447812-60447831 | Msa0511120:intron | 45.0% |
| CAATTGTGTGAAGCGTGTTG+TGG | + | chr3_4:60447884-60447903 | Msa0511120:CDS | 45.0% | |
| ! | AAAGCATTCACAGGAGAGAC+AGG | - | chr3_4:60447942-60447961 | None:intergenic | 45.0% |
| ! | GTCTCTCCTGTGAATGCTTT+TGG | + | chr3_4:60447942-60447961 | Msa0511120:CDS | 45.0% |
| AACACCAGCAAGAGCTATAG+CGG | - | chr3_4:60448064-60448083 | None:intergenic | 45.0% | |
| ATAATGTGTGGCATGGCATG+GGG | - | chr3_4:60448245-60448264 | None:intergenic | 45.0% | |
| GATAATGTGTGGCATGGCAT+GGG | - | chr3_4:60448246-60448265 | None:intergenic | 45.0% | |
| !! | AATATAAAAAGAAAAAAAAA+AGG | - | chr3_4:60446725-60446744 | None:intergenic | 5.0% |
| CCCTCACCAAACATTGTTGC+TGG | + | chr3_4:60443032-60443051 | Msa0511120:five_prime_UTR | 50.0% | |
| CCAAACATTGTTGCTGGTGG+CGG | + | chr3_4:60443038-60443057 | Msa0511120:five_prime_UTR | 50.0% | |
| CTTCAAAACACTCGCCCGAT+AGG | + | chr3_4:60443090-60443109 | Msa0511120:five_prime_UTR | 50.0% | |
| ACGGAAACGGAAACGGAAGA+TGG | - | chr3_4:60443163-60443182 | None:intergenic | 50.0% | |
| !! | GAAGGCTGTGGACTGCATTT+TGG | - | chr3_4:60443195-60443214 | None:intergenic | 50.0% |
| !! | GGTTAAGGGAGCGTCTGAAA+CGG | - | chr3_4:60443256-60443275 | None:intergenic | 50.0% |
| AGAGGAAGAGGAAGGAGACA+TGG | - | chr3_4:60443381-60443400 | None:intergenic | 50.0% | |
| GGAGGAGAAAGATCGGAAGT+AGG | - | chr3_4:60443434-60443453 | None:intergenic | 50.0% | |
| GGCTTGAGGAGGAGAAAGAT+CGG | - | chr3_4:60443441-60443460 | None:intergenic | 50.0% | |
| TAGCAACGAACTAGACTCGG+CGG | - | chr3_4:60443495-60443514 | None:intergenic | 50.0% | |
| ! | GCCTAAAATCACTGGTGCCA+TGG | + | chr3_4:60443832-60443851 | Msa0511120:intron | 50.0% |
| ACGAGTGAACCAATCACCCA+GGG | - | chr3_4:60444709-60444728 | None:intergenic | 50.0% | |
| GGTTCACTCGTGCCTATTGT+TGG | + | chr3_4:60444718-60444737 | Msa0511120:CDS | 50.0% | |
| TCACTCGTGCCTATTGTTGG+TGG | + | chr3_4:60444721-60444740 | Msa0511120:CDS | 50.0% | |
| ! | CCACTACCTCTAGAAGGAAC+AGG | - | chr3_4:60444802-60444821 | None:intergenic | 50.0% |
| ! | CCTGTTCCTTCTAGAGGTAG+TGG | + | chr3_4:60444799-60444818 | Msa0511120:intron | 50.0% |
| CCTTCTCCACTACCTCTAGA+AGG | - | chr3_4:60444808-60444827 | None:intergenic | 50.0% | |
| !! | CCTTCTAGAGGTAGTGGAGA+AGG | + | chr3_4:60444805-60444824 | Msa0511120:intron | 50.0% |
| !! | GAGGTAGTGGAGAAGGGATA+TGG | + | chr3_4:60444812-60444831 | Msa0511120:intron | 50.0% |
| AGTGGAGAAGGGATATGGCA+TGG | + | chr3_4:60444817-60444836 | Msa0511120:intron | 50.0% | |
| ACCCTCCATGAAGATAGCTG+CGG | - | chr3_4:60445163-60445182 | None:intergenic | 50.0% | |
| AGCAGATTGCAGGTAAGCAG+GGG | - | chr3_4:60445196-60445215 | None:intergenic | 50.0% | |
| CAGCAGATTGCAGGTAAGCA+GGG | - | chr3_4:60445197-60445216 | None:intergenic | 50.0% | |
| ACAGCAGATTGCAGGTAAGC+AGG | - | chr3_4:60445198-60445217 | None:intergenic | 50.0% | |
| GAGTGCAGCAAGAAGAGATC+TGG | - | chr3_4:60445351-60445370 | None:intergenic | 50.0% | |
| TTGCAAGAACCTGATAGGGG+AGG | + | chr3_4:60445470-60445489 | Msa0511120:intron | 50.0% | |
| !! | GTTGATTAGCCTCCCCTATC+AGG | - | chr3_4:60445482-60445501 | None:intergenic | 50.0% |
| ACTTAAATTGGGGTGGAGCC+TGG | + | chr3_4:60445865-60445884 | Msa0511120:intron | 50.0% | |
| CCCTGTTCAAACCTTGGACT+CGG | - | chr3_4:60446100-60446119 | None:intergenic | 50.0% | |
| CCGAGTCCAAGGTTTGAACA+GGG | + | chr3_4:60446097-60446116 | Msa0511120:intron | 50.0% | |
| CATTCCACAAACGCGCAACT+CGG | - | chr3_4:60446235-60446254 | None:intergenic | 50.0% | |
| AGTTGCGCGTTTGTGGAATG+CGG | + | chr3_4:60446235-60446254 | Msa0511120:intron | 50.0% | |
| TTTGTGGAATGCGGGTTTCG+CGG | + | chr3_4:60446244-60446263 | Msa0511120:intron | 50.0% | |
| GGTCAAATCGCCCGCTATTT+GGG | + | chr3_4:60446300-60446319 | Msa0511120:intron | 50.0% | |
| AAATCGCCCGCTATTTGGGT+CGG | + | chr3_4:60446304-60446323 | Msa0511120:intron | 50.0% | |
| TTGTGCTCCGACCCAAATAG+CGG | - | chr3_4:60446314-60446333 | None:intergenic | 50.0% | |
| GGAAAGGAAGGTCACGTGTT+TGG | - | chr3_4:60446653-60446672 | None:intergenic | 50.0% | |
| ! | GCTGCATGTTTCTGACAGTG+TGG | + | chr3_4:60447500-60447519 | Msa0511120:intron | 50.0% |
| CACACAATTGCCGACGGAAT+GGG | - | chr3_4:60447874-60447893 | None:intergenic | 50.0% | |
| TCACACAATTGCCGACGGAA+TGG | - | chr3_4:60447875-60447894 | None:intergenic | 50.0% | |
| ACGCTTCACACAATTGCCGA+CGG | - | chr3_4:60447880-60447899 | None:intergenic | 50.0% | |
| GGATAATGTGTGGCATGGCA+TGG | - | chr3_4:60448247-60448266 | None:intergenic | 50.0% | |
| CCGCCACCAGCAACAATGTT+TGG | - | chr3_4:60443041-60443060 | None:intergenic | 55.0% | |
| !! | TGAAACGGTTGGGGTTGGTG+TGG | - | chr3_4:60443241-60443260 | None:intergenic | 55.0% |
| !! | AGGGAGCGTCTGAAACGGTT+GGG | - | chr3_4:60443251-60443270 | None:intergenic | 55.0% |
| !! | AAGGGAGCGTCTGAAACGGT+TGG | - | chr3_4:60443252-60443271 | None:intergenic | 55.0% |
| ! | ATGATTTGGCGGCGGAGAGA+CGG | - | chr3_4:60443280-60443299 | None:intergenic | 55.0% |
| TCTAACAGAGGCCTACACCC+TGG | + | chr3_4:60444689-60444708 | Msa0511120:intron | 55.0% | |
| CTAACAGAGGCCTACACCCT+GGG | + | chr3_4:60444690-60444709 | Msa0511120:intron | 55.0% | |
| GAACCAATCACCCAGGGTGT+AGG | - | chr3_4:60444703-60444722 | None:intergenic | 55.0% | |
| CACGAGTGAACCAATCACCC+AGG | - | chr3_4:60444710-60444729 | None:intergenic | 55.0% | |
| GGCTGGATTTGCGAGTGCAA+TGG | + | chr3_4:60444904-60444923 | Msa0511120:CDS | 55.0% | |
| AGCTCCCGCAGCTATCTTCA+TGG | + | chr3_4:60445155-60445174 | Msa0511120:CDS | 55.0% | |
| TCCCGCAGCTATCTTCATGG+AGG | + | chr3_4:60445158-60445177 | Msa0511120:CDS | 55.0% | |
| CCCTCCATGAAGATAGCTGC+GGG | - | chr3_4:60445162-60445181 | None:intergenic | 55.0% | |
| CCCGCAGCTATCTTCATGGA+GGG | + | chr3_4:60445159-60445178 | Msa0511120:CDS | 55.0% | |
| TAAATTGGGGTGGAGCCTGG+AGG | + | chr3_4:60445868-60445887 | Msa0511120:intron | 55.0% | |
| AAATTGGGGTGGAGCCTGGA+GGG | + | chr3_4:60445869-60445888 | Msa0511120:intron | 55.0% | |
| GGTCGCCCCAACATGTTTAG+AGG | + | chr3_4:60445998-60446017 | Msa0511120:intron | 55.0% | |
| GCCGAGTCCAAGGTTTGAAC+AGG | + | chr3_4:60446096-60446115 | Msa0511120:intron | 55.0% | |
| GTTGCGCGTTTGTGGAATGC+GGG | + | chr3_4:60446236-60446255 | Msa0511120:intron | 55.0% | |
| CGGTCAAATCGCCCGCTATT+TGG | + | chr3_4:60446299-60446318 | Msa0511120:intron | 55.0% | |
| TGTGCTCCGACCCAAATAGC+GGG | - | chr3_4:60446313-60446332 | None:intergenic | 55.0% | |
| ! | TACCGCGCCGCGTCAATTTT+TGG | + | chr3_4:60447256-60447275 | Msa0511120:intron | 55.0% |
| ! | ACCGCGCCGCGTCAATTTTT+GGG | + | chr3_4:60447257-60447276 | Msa0511120:intron | 55.0% |
| GGCCACCCCAAAAATTGACG+CGG | - | chr3_4:60447266-60447285 | None:intergenic | 55.0% | |
| GAGCCAAGTAGCCCAGACTA+GGG | - | chr3_4:60447413-60447432 | None:intergenic | 55.0% | |
| AGAGCCAAGTAGCCCAGACT+AGG | - | chr3_4:60447414-60447433 | None:intergenic | 55.0% | |
| ! | GTCTGGGCTACTTGGCTCTT+CGG | + | chr3_4:60447415-60447434 | Msa0511120:intron | 55.0% |
| TCCCCTGTTACCCATTCCGT+CGG | + | chr3_4:60447861-60447880 | Msa0511120:CDS | 55.0% | |
| TGCCGACGGAATGGGTAACA+GGG | - | chr3_4:60447866-60447885 | None:intergenic | 55.0% | |
| TTGCCGACGGAATGGGTAAC+AGG | - | chr3_4:60447867-60447886 | None:intergenic | 55.0% | |
| GGTACCGCTATAGCTCTTGC+TGG | + | chr3_4:60448057-60448076 | Msa0511120:intron | 55.0% | |
| GCATGGCATGGGGTCAAGAA+AGG | - | chr3_4:60448235-60448254 | None:intergenic | 55.0% | |
| AGGGGAGAGAGTGAAGGCTG+TGG | - | chr3_4:60443207-60443226 | None:intergenic | 60.0% | |
| GAGGGTAGGGGAGAGAGTGA+AGG | - | chr3_4:60443213-60443232 | None:intergenic | 60.0% | |
| TGGTGTGGAGAGGGAGGGTA+GGG | - | chr3_4:60443226-60443245 | None:intergenic | 60.0% | |
| TTGGTGTGGAGAGGGAGGGT+AGG | - | chr3_4:60443227-60443246 | None:intergenic | 60.0% | |
| !! | GGTTGGGGTTGGTGTGGAGA+GGG | - | chr3_4:60443235-60443254 | None:intergenic | 60.0% |
| ! | GCGTCTGAAACGGTTGGGGT+TGG | - | chr3_4:60443246-60443265 | None:intergenic | 60.0% |
| !! | GGGAGCGTCTGAAACGGTTG+GGG | - | chr3_4:60443250-60443269 | None:intergenic | 60.0% |
| GGCGGAGAGACGGAGGTTAA+GGG | - | chr3_4:60443270-60443289 | None:intergenic | 60.0% | |
| CAACGAACTAGACTCGGCGG+CGG | - | chr3_4:60443492-60443511 | None:intergenic | 60.0% | |
| AGGCCTACACCCTGGGTGAT+TGG | + | chr3_4:60444697-60444716 | Msa0511120:CDS | 60.0% | |
| TTGTCAAAAGCGGCCGCTCC+CGG | + | chr3_4:60446158-60446177 | Msa0511120:intron | 60.0% | |
| ! | GTGACGCGGCTGCTCGTTTT+TGG | - | chr3_4:60446205-60446224 | None:intergenic | 60.0% |
| ! | AACTCGGTGGCGTTGTGACG+CGG | - | chr3_4:60446219-60446238 | None:intergenic | 60.0% |
| TCCACAAACGCGCAACTCGG+TGG | - | chr3_4:60446232-60446251 | None:intergenic | 60.0% | |
| CGCTACGCCTCACAGAAACG+CGG | - | chr3_4:60446270-60446289 | None:intergenic | 60.0% | |
| CGCGTTTCTGTGAGGCGTAG+CGG | + | chr3_4:60446268-60446287 | Msa0511120:intron | 60.0% | |
| GCGTTTCTGTGAGGCGTAGC+GGG | + | chr3_4:60446269-60446288 | Msa0511120:intron | 60.0% | |
| !! | GAGGCGTAGCGGGTCAATAG+CGG | + | chr3_4:60446279-60446298 | Msa0511120:intron | 60.0% |
| TTGCGTTGCGCAGCTCTCCA+TGG | + | chr3_4:60446512-60446531 | Msa0511120:intron | 60.0% | |
| ! | GCGGGGGCTTTTACATGACG+CGG | - | chr3_4:60447224-60447243 | None:intergenic | 60.0% |
| AATTGACGCGGCGCGGTATG+CGG | - | chr3_4:60447254-60447273 | None:intergenic | 60.0% | |
| CCCCAAAAATTGACGCGGCG+CGG | - | chr3_4:60447261-60447280 | None:intergenic | 60.0% | |
| ! | CCGCGCCGCGTCAATTTTTG+GGG | + | chr3_4:60447258-60447277 | Msa0511120:intron | 60.0% |
| !! | CGCCGCGTCAATTTTTGGGG+TGG | + | chr3_4:60447261-60447280 | Msa0511120:intron | 60.0% |
| GTCAAAGCAGAAACGCGGCG+CGG | - | chr3_4:60447292-60447311 | None:intergenic | 60.0% | |
| AGGCCCTAGTCTGGGCTACT+TGG | + | chr3_4:60447407-60447426 | Msa0511120:intron | 60.0% | |
| GCCGACGGAATGGGTAACAG+GGG | - | chr3_4:60447865-60447884 | None:intergenic | 60.0% | |
| !! | TGCTGGTGGCGGACTACACG+AGG | + | chr3_4:60443049-60443068 | Msa0511120:five_prime_UTR | 65.0% |
| !! | GCTGGTGGCGGACTACACGA+GGG | + | chr3_4:60443050-60443069 | Msa0511120:five_prime_UTR | 65.0% |
| GGTGTGGAGAGGGAGGGTAG+GGG | - | chr3_4:60443225-60443244 | None:intergenic | 65.0% | |
| !! | GGGGTTGGTGTGGAGAGGGA+GGG | - | chr3_4:60443231-60443250 | None:intergenic | 65.0% |
| !! | TGGGGTTGGTGTGGAGAGGG+AGG | - | chr3_4:60443232-60443251 | None:intergenic | 65.0% |
| !! | CGGTTGGGGTTGGTGTGGAG+AGG | - | chr3_4:60443236-60443255 | None:intergenic | 65.0% |
| CGGCGGAGAGACGGAGGTTA+AGG | - | chr3_4:60443271-60443290 | None:intergenic | 65.0% | |
| ATTTGGCGGCGGAGAGACGG+AGG | - | chr3_4:60443277-60443296 | None:intergenic | 65.0% | |
| GGGACGGAAGTGGCTTGAGG+AGG | - | chr3_4:60443452-60443471 | None:intergenic | 65.0% | |
| TCGGGGACGGAAGTGGCTTG+AGG | - | chr3_4:60443455-60443474 | None:intergenic | 65.0% | |
| AGCGCTTTCGGGGACGGAAG+TGG | - | chr3_4:60443462-60443481 | None:intergenic | 65.0% | |
| ! | ACTTCCGTCCCCGAAAGCGC+TGG | + | chr3_4:60443461-60443480 | Msa0511120:CDS | 65.0% |
| GTCACCAGCGCTTTCGGGGA+CGG | - | chr3_4:60443468-60443487 | None:intergenic | 65.0% | |
| CGGAGTCACCAGCGCTTTCG+GGG | - | chr3_4:60443472-60443491 | None:intergenic | 65.0% | |
| GCGGAGTCACCAGCGCTTTC+GGG | - | chr3_4:60443473-60443492 | None:intergenic | 65.0% | |
| GGCGGAGTCACCAGCGCTTT+CGG | - | chr3_4:60443474-60443493 | None:intergenic | 65.0% | |
| GCCACCGAGTTGCGCGTTTG+TGG | + | chr3_4:60446228-60446247 | Msa0511120:intron | 65.0% | |
| TTCGCGGCCGCGTTTCTGTG+AGG | + | chr3_4:60446260-60446279 | Msa0511120:intron | 65.0% | |
| ATTGACGCGGCGCGGTATGC+GGG | - | chr3_4:60447253-60447272 | None:intergenic | 65.0% | |
| AGCAGAAACGCGGCGCGGCG+CGG | - | chr3_4:60447287-60447306 | None:intergenic | 75.0% | |
| ! | GGCCGCTCCCGGCGCTATCG+CGG | + | chr3_4:60446169-60446188 | Msa0511120:intron | 80.0% |
| !! | CGCCGCGATAGCGCCGGGAG+CGG | - | chr3_4:60446174-60446193 | None:intergenic | 80.0% |
| ! | CTCCCGGCGCTATCGCGGCG+CGG | + | chr3_4:60446174-60446193 | Msa0511120:intron | 80.0% |
| ! | CTCCGCGCCGCGATAGCGCC+GGG | - | chr3_4:60446179-60446198 | None:intergenic | 80.0% |
| ! | GCTCCGCGCCGCGATAGCGC+CGG | - | chr3_4:60446180-60446199 | None:intergenic | 80.0% |
| ! | GGCGCTATCGCGGCGCGGAG+CGG | + | chr3_4:60446179-60446198 | Msa0511120:intron | 80.0% |
| ! | GGTATGCGGGCGCGACGCGG+GGG | - | chr3_4:60447240-60447259 | None:intergenic | 80.0% |
| ! | CGGTATGCGGGCGCGACGCG+GGG | - | chr3_4:60447241-60447260 | None:intergenic | 80.0% |
| ! | GCGGTATGCGGGCGCGACGC+GGG | - | chr3_4:60447242-60447261 | None:intergenic | 80.0% |
| ! | CGCGGTATGCGGGCGCGACG+CGG | - | chr3_4:60447243-60447262 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 60443000 | 60448575 | 60443000 | ID=Msa0511120;Name=Msa0511120 |
| chr3_4 | mRNA | 60443000 | 60448575 | 60443000 | ID=Msa0511120-mRNA-1;Parent=Msa0511120;Name=Msa0511120-mRNA-1;_AED=0.06;_eAED=0.06;_QI=197|0.75|0.66|1|1|1|9|441|421 |
| chr3_4 | exon | 60443000 | 60443589 | 60443000 | ID=Msa0511120-mRNA-1:exon:14427;Parent=Msa0511120-mRNA-1 |
| chr3_4 | exon | 60443731 | 60443845 | 60443731 | ID=Msa0511120-mRNA-1:exon:14428;Parent=Msa0511120-mRNA-1 |
| chr3_4 | exon | 60444059 | 60444204 | 60444059 | ID=Msa0511120-mRNA-1:exon:14429;Parent=Msa0511120-mRNA-1 |
| chr3_4 | exon | 60444697 | 60444782 | 60444697 | ID=Msa0511120-mRNA-1:exon:14430;Parent=Msa0511120-mRNA-1 |
| chr3_4 | exon | 60444904 | 60444988 | 60444904 | ID=Msa0511120-mRNA-1:exon:14431;Parent=Msa0511120-mRNA-1 |
| chr3_4 | exon | 60445096 | 60445260 | 60445096 | ID=Msa0511120-mRNA-1:exon:14432;Parent=Msa0511120-mRNA-1 |
| chr3_4 | exon | 60445323 | 60445391 | 60445323 | ID=Msa0511120-mRNA-1:exon:14433;Parent=Msa0511120-mRNA-1 |
| chr3_4 | exon | 60447834 | 60447963 | 60447834 | ID=Msa0511120-mRNA-1:exon:14434;Parent=Msa0511120-mRNA-1 |
| chr3_4 | exon | 60448058 | 60448575 | 60448058 | ID=Msa0511120-mRNA-1:exon:14435;Parent=Msa0511120-mRNA-1 |
| chr3_4 | five_prime_UTR | 60443000 | 60443196 | 60443000 | ID=Msa0511120-mRNA-1:five_prime_utr;Parent=Msa0511120-mRNA-1 |
| chr3_4 | CDS | 60443197 | 60443589 | 60443197 | ID=Msa0511120-mRNA-1:cds;Parent=Msa0511120-mRNA-1 |
| chr3_4 | CDS | 60443731 | 60443845 | 60443731 | ID=Msa0511120-mRNA-1:cds;Parent=Msa0511120-mRNA-1 |
| chr3_4 | CDS | 60444059 | 60444204 | 60444059 | ID=Msa0511120-mRNA-1:cds;Parent=Msa0511120-mRNA-1 |
| chr3_4 | CDS | 60444697 | 60444782 | 60444697 | ID=Msa0511120-mRNA-1:cds;Parent=Msa0511120-mRNA-1 |
| chr3_4 | CDS | 60444904 | 60444988 | 60444904 | ID=Msa0511120-mRNA-1:cds;Parent=Msa0511120-mRNA-1 |
| chr3_4 | CDS | 60445096 | 60445260 | 60445096 | ID=Msa0511120-mRNA-1:cds;Parent=Msa0511120-mRNA-1 |
| chr3_4 | CDS | 60445323 | 60445391 | 60445323 | ID=Msa0511120-mRNA-1:cds;Parent=Msa0511120-mRNA-1 |
| chr3_4 | CDS | 60447834 | 60447963 | 60447834 | ID=Msa0511120-mRNA-1:cds;Parent=Msa0511120-mRNA-1 |
| chr3_4 | CDS | 60448058 | 60448134 | 60448058 | ID=Msa0511120-mRNA-1:cds;Parent=Msa0511120-mRNA-1 |
| chr3_4 | three_prime_UTR | 60448135 | 60448575 | 60448135 | ID=Msa0511120-mRNA-1:three_prime_utr;Parent=Msa0511120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
