AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0422980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0422980 MtrunA17_Chr3g0123821 99.550 222 1 0 1 222 1 222 2.06e-167 459
Msa0422980 MtrunA17_Chr8g0381841 89.732 224 21 2 1 222 1 224 3.77e-151 419
Msa0422980 MtrunA17_Chr1g0174281 73.394 218 56 2 6 221 5 222 1.49e-116 331
Msa0422980 MtrunA17_Chr7g0231131 72.558 215 59 0 6 220 5 219 6.45e-115 327
Msa0422980 MtrunA17_Chr8g0346421 65.438 217 67 2 8 220 18 230 3.92e-97 282
Msa0422980 MtrunA17_Chr7g0275991 66.184 207 67 2 11 216 15 219 4.57e-96 280
Msa0422980 MtrunA17_Chr4g0032201 63.208 212 74 1 10 221 6 213 1.77e-95 277
Msa0422980 MtrunA17_Chr2g0276941 61.321 212 78 2 11 221 10 218 1.59e-92 270
Msa0422980 MtrunA17_Chr3g0112681 62.802 207 75 1 14 220 10 214 7.89e-92 268
Msa0422980 MtrunA17_Chr2g0315551 59.633 218 84 4 4 221 2 215 1.30e-90 265
Msa0422980 MtrunA17_Chr8g0351861 56.561 221 90 3 7 221 6 226 3.47e-90 265
Msa0422980 MtrunA17_Chr2g0319951 64.865 185 64 1 4 188 2 185 2.34e-88 259
Msa0422980 MtrunA17_Chr2g0283131 57.674 215 84 3 9 221 6 215 6.64e-87 256
Msa0422980 MtrunA17_Chr4g0046261 55.814 215 88 2 9 221 6 215 2.69e-86 254
Msa0422980 MtrunA17_Chr2g0325091 55.814 215 91 1 7 221 2 212 6.10e-86 253
Msa0422980 MtrunA17_Chr4g0040781 55.814 215 88 2 9 221 6 215 1.19e-85 253
Msa0422980 MtrunA17_Chr1g0189361 57.820 211 86 1 14 221 12 222 1.33e-85 253
Msa0422980 MtrunA17_Chr7g0214241 55.924 211 84 2 15 221 14 219 9.16e-83 245
Msa0422980 MtrunA17_Chr7g0234201 56.250 208 85 2 15 221 12 214 1.41e-79 237
Msa0422980 MtrunA17_Chr6g0482721 51.887 212 99 1 10 221 6 214 4.28e-75 226
Msa0422980 MtrunA17_Chr8g0392931 53.271 214 94 3 10 221 8 217 3.96e-73 221
Msa0422980 MtrunA17_Chr2g0290891 46.193 197 101 2 15 211 5 196 1.83e-60 188
Msa0422980 MtrunA17_Chr6g0458081 51.515 165 80 0 14 178 4 168 8.85e-60 187
Msa0422980 MtrunA17_Chr8g0335471 44.811 212 105 2 10 221 2 201 2.14e-59 186
Msa0422980 MtrunA17_Chr4g0055651 43.868 212 106 2 10 221 2 200 5.40e-59 184
Msa0422980 MtrunA17_Chr8g0349711 51.829 164 79 0 15 178 5 168 6.06e-59 184
Msa0422980 MtrunA17_Chr7g0250531 43.396 212 107 2 10 221 2 200 1.23e-57 181
Msa0422980 MtrunA17_Chr2g0276931 42.723 213 110 2 9 221 2 202 8.49e-57 179
Msa0422980 MtrunA17_Chr4g0030911 42.584 209 111 3 14 221 13 213 1.82e-56 178
Msa0422980 MtrunA17_Chr8g0349681 50.610 164 81 0 15 178 383 546 1.32e-54 183
Msa0422980 MtrunA17_Chr8g0349681 47.027 185 97 1 10 193 169 353 1.31e-51 175
Msa0422980 MtrunA17_Chr8g0349681 51.923 156 75 0 15 170 12 167 1.47e-50 172
Msa0422980 MtrunA17_Chr1g0212521 42.105 209 113 3 14 221 13 214 1.54e-54 173
Msa0422980 MtrunA17_Chr1g0182321 47.059 170 89 1 9 177 8 177 2.00e-54 173
Msa0422980 MtrunA17_Chr7g0263071 47.879 165 85 1 14 177 13 177 6.12e-54 172
Msa0422980 MtrunA17_Chr1g0182301 46.471 170 90 1 9 177 8 177 6.39e-54 172
Msa0422980 MtrunA17_Chr2g0327911 44.578 166 90 2 14 177 13 178 4.59e-49 159
Msa0422980 MtrunA17_Chr3g0109721 44.509 173 90 1 1 173 1 167 4.66e-49 159
Msa0422980 MtrunA17_Chr1g0199331 47.904 167 83 2 5 170 23 186 8.04e-49 158
Msa0422980 MtrunA17_Chr5g0433561 39.819 221 111 5 1 221 1 199 1.43e-47 155
Msa0422980 MtrunA17_Chr8g0384311 38.140 215 119 5 9 221 6 208 1.23e-46 153
Msa0422980 MtrunA17_Chr8g0390561 37.745 204 110 2 18 221 11 197 2.34e-46 152
Msa0422980 MtrunA17_Chr1g0159481 37.264 212 120 5 12 221 13 213 2.84e-44 147
Msa0422980 MtrunA17_Chr3g0130271 37.383 214 119 6 11 221 7 208 1.02e-42 143
Msa0422980 MtrunA17_Chr8g0382221 34.848 198 113 2 17 198 10 207 1.12e-42 143
Msa0422980 MtrunA17_Chr3g0123971 39.610 154 93 0 17 170 10 163 1.28e-42 143
Msa0422980 MtrunA17_Chr5g0400131 39.610 154 93 0 17 170 10 163 2.43e-42 142
Msa0422980 MtrunA17_Chr7g0265001 45.283 159 85 2 14 170 14 172 2.61e-42 142
Msa0422980 MtrunA17_Chr1g0197331 42.286 175 98 3 9 180 8 182 3.82e-41 139
Msa0422980 MtrunA17_Chr4g0055081 37.662 154 96 0 17 170 10 163 5.25e-41 139
Msa0422980 MtrunA17_Chr1g0180291 42.012 169 95 3 14 180 12 179 4.59e-40 136
Msa0422980 MtrunA17_Chr8g0383261 38.182 165 95 3 16 173 12 176 5.93e-35 123
Msa0422980 MtrunA17_Chr6g0466301 39.394 165 93 3 16 173 8 172 7.97e-35 122
Msa0422980 MtrunA17_Chr6g0465491 39.394 165 93 3 16 173 8 172 7.97e-35 122
Msa0422980 MtrunA17_Chr4g0034871 35.714 196 117 4 16 202 8 203 8.50e-35 122
Msa0422980 MtrunA17_Chr1g0201121 38.788 165 94 3 16 173 8 172 1.40e-34 122
Msa0422980 MtrunA17_Chr2g0331691 37.576 165 96 3 16 173 10 174 6.36e-33 118
Msa0422980 MtrunA17_Chr4g0004661 37.576 165 96 3 16 173 64 228 6.67e-32 117
Msa0422980 MtrunA17_Chr6g0465471 38.514 148 84 4 33 173 7 154 1.85e-26 101
Msa0422980 MtrunA17_Chr6g0466161 38.514 148 84 4 33 173 7 154 1.89e-26 101
Msa0422980 MtrunA17_Chr3g0138111 28.986 207 130 5 11 214 7 199 6.63e-24 95.1
Msa0422980 MtrunA17_Chr3g0138101 28.986 207 130 5 11 214 7 199 7.85e-24 94.7
Msa0422980 MtrunA17_Chr3g0138121 29.126 206 129 5 11 213 7 198 2.92e-23 93.2
Msa0422980 MtrunA17_Chr2g0325101 33.333 165 96 5 18 170 8 170 3.94e-21 87.0
Msa0422980 MtrunA17_Chr4g0046211 35.537 121 75 3 18 137 8 126 5.22e-20 82.8
Msa0422980 MtrunA17_Chr3g0117931 32.121 165 98 5 18 170 10 172 6.30e-20 84.3
Msa0422980 MtrunA17_Chr6g0486041 28.877 187 119 5 18 192 8 192 1.11e-19 83.6
Msa0422980 MtrunA17_Chr4g0037021 35.294 119 74 3 18 135 8 124 2.20e-18 79.7
Msa0422980 MtrunA17_Chr8g0371501 31.325 166 98 6 18 170 8 170 1.09e-17 77.8
Msa0422980 MtrunA17_Chr5g0405791 31.325 166 98 6 18 170 8 170 3.82e-17 76.6
Msa0422980 MtrunA17_Chr6g0466431 37.374 99 53 1 16 114 8 97 5.05e-17 73.6
Msa0422980 MtrunA17_Chr6g0465611 37.374 99 53 1 16 114 8 97 5.05e-17 73.6
Msa0422980 MtrunA17_Chr1g0178291 31.447 159 102 3 19 177 431 582 2.25e-15 74.3
Msa0422980 MtrunA17_Chr5g0443631 26.744 172 114 5 17 180 105 272 1.88e-13 67.8
Msa0422980 MtrunA17_Chr2g0331841 44.828 58 32 0 85 142 2 59 1.09e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0422980 AT5G65270.1 85.135 222 31 2 2 221 3 224 1.21e-138 387
Msa0422980 AT4G39990.1 80.569 211 38 2 12 221 13 221 5.99e-126 355
Msa0422980 AT3G12160.1 75.926 216 51 1 6 221 5 219 8.27e-124 350
Msa0422980 AT5G47960.1 74.528 212 53 1 10 220 9 220 2.59e-115 328
Msa0422980 AT1G09630.1 60.190 211 82 1 10 220 6 214 1.33e-94 276
Msa0422980 AT1G07410.1 61.321 212 77 1 10 221 6 212 5.22e-94 274
Msa0422980 AT4G18800.1 61.009 218 78 3 4 221 2 212 2.74e-92 270
Msa0422980 AT1G16920.1 60.092 218 82 3 4 221 2 214 5.74e-91 266
Msa0422980 AT5G45750.1 60.550 218 81 3 4 221 2 214 4.34e-90 264
Msa0422980 AT3G46830.1 69.143 175 54 0 10 184 6 180 2.08e-89 263
Msa0422980 AT3G46830.2 69.143 175 54 0 10 184 6 180 2.08e-89 263
Msa0422980 AT4G18430.1 56.744 215 86 2 9 221 6 215 2.76e-89 262
Msa0422980 AT5G59150.1 69.540 174 53 0 11 184 7 180 1.62e-88 260
Msa0422980 AT2G33870.1 57.674 215 85 2 9 221 6 216 3.34e-88 259
Msa0422980 AT5G47520.1 57.991 219 90 2 4 221 2 219 4.45e-88 259
Msa0422980 AT1G28550.1 58.605 215 83 2 9 221 6 216 1.33e-87 258
Msa0422980 AT1G06400.1 57.991 219 85 3 4 221 2 214 8.31e-87 256
Msa0422980 AT1G01200.1 60.369 217 75 5 11 220 23 235 9.89e-87 256
Msa0422980 AT5G60860.1 57.674 215 84 3 9 221 6 215 1.29e-86 255
Msa0422980 AT3G15060.1 56.744 215 86 3 9 221 6 215 1.59e-85 253
Msa0422980 AT1G05810.1 63.636 176 64 0 14 189 10 185 2.49e-82 244
Msa0422980 AT1G05810.2 63.636 176 64 0 14 189 56 231 3.67e-82 246
Msa0422980 AT2G43130.1 54.808 208 89 1 14 221 10 212 5.78e-81 241
Msa0422980 AT2G31680.1 61.364 176 68 0 14 189 10 185 2.85e-80 239
Msa0422980 AT3G07410.1 63.068 176 65 0 14 189 10 185 6.55e-79 236
Msa0422980 AT1G73640.1 51.339 224 96 4 11 221 8 231 7.06e-75 226
Msa0422980 AT1G18200.1 50.935 214 98 3 1 214 1 207 2.30e-74 225
Msa0422980 AT5G59150.2 70.400 125 37 0 60 184 5 129 9.38e-62 191
Msa0422980 AT4G17170.1 44.076 211 109 3 15 221 5 210 9.56e-61 189
Msa0422980 AT1G02130.1 46.226 212 102 3 10 221 2 201 1.15e-60 189
Msa0422980 AT4G17160.1 44.340 212 101 3 15 221 5 204 7.47e-60 187
Msa0422980 AT4G35860.1 43.192 213 110 2 14 221 4 210 2.01e-59 186
Msa0422980 AT5G47200.1 44.811 212 104 2 10 221 2 200 1.29e-57 181
Msa0422980 AT4G17530.1 44.811 212 104 2 10 221 2 200 1.33e-57 181
Msa0422980 AT3G11730.1 45.455 209 102 5 14 221 6 203 1.86e-56 178
Msa0422980 AT5G59840.1 41.627 209 114 3 14 221 13 214 2.10e-54 174
Msa0422980 AT3G46060.2 41.627 209 114 3 14 221 13 214 2.37e-54 173
Msa0422980 AT3G46060.3 41.627 209 114 3 14 221 13 214 2.37e-54 173
Msa0422980 AT3G46060.1 41.627 209 114 3 14 221 13 214 2.37e-54 173
Msa0422980 AT5G03520.1 41.121 214 117 3 9 221 8 213 7.33e-53 169
Msa0422980 AT3G53610.2 46.667 165 87 1 14 177 13 177 2.10e-52 168
Msa0422980 AT3G53610.3 46.667 165 87 1 14 177 13 177 2.10e-52 168
Msa0422980 AT3G53610.1 46.667 165 87 1 14 177 13 177 2.10e-52 168
Msa0422980 AT3G54840.2 51.948 154 73 1 18 170 35 188 1.23e-51 166
Msa0422980 AT3G09900.1 41.364 220 110 4 9 221 8 215 1.38e-51 166
Msa0422980 AT3G54840.1 51.948 154 73 1 18 170 35 188 1.75e-51 166
Msa0422980 AT3G54840.3 51.634 153 73 1 19 170 2 154 5.60e-51 163
Msa0422980 AT4G19640.1 37.557 221 116 3 1 221 1 199 6.21e-48 156
Msa0422980 AT1G43890.3 41.232 211 109 6 5 212 2 200 1.18e-46 154
Msa0422980 AT1G43890.1 41.232 211 109 6 5 212 2 200 1.18e-46 154
Msa0422980 AT1G43890.2 41.232 211 109 6 5 212 2 200 1.18e-46 154
Msa0422980 AT5G45130.1 42.775 173 93 1 1 173 1 167 7.15e-46 151
Msa0422980 AT4G35860.2 52.066 121 58 0 58 178 2 122 1.88e-44 146
Msa0422980 AT5G45130.2 44.156 154 86 0 20 173 22 175 6.84e-44 146
Msa0422980 AT2G22290.1 40.260 154 92 0 17 170 10 163 4.70e-43 144
Msa0422980 AT5G10260.1 38.961 154 94 0 17 170 10 163 6.15e-42 141
Msa0422980 AT2G44610.1 38.312 154 95 0 17 170 10 163 2.87e-41 140
Msa0422980 AT4G39890.1 38.065 155 95 1 17 170 10 164 5.17e-41 139
Msa0422980 AT5G03520.2 39.535 172 95 3 51 221 40 203 7.17e-41 139
Msa0422980 AT5G03530.2 36.986 219 125 6 5 221 2 209 1.32e-39 135
Msa0422980 AT5G03530.1 36.986 219 125 6 5 221 2 209 1.32e-39 135
Msa0422980 AT5G64990.1 35.404 161 104 0 17 177 8 168 4.73e-37 129
Msa0422980 AT4G19640.3 37.500 176 103 2 1 176 1 169 5.55e-37 128
Msa0422980 AT4G19640.2 42.958 142 75 2 1 142 1 136 4.15e-36 124
Msa0422980 AT1G22740.1 39.394 165 93 3 16 173 8 172 3.90e-35 124
Msa0422980 AT2G21880.1 39.394 165 93 3 16 173 9 173 4.96e-35 124
Msa0422980 AT3G18820.1 39.394 165 93 3 16 173 8 172 1.73e-34 122
Msa0422980 AT4G09720.1 40.000 165 92 3 16 173 8 172 2.07e-34 122
Msa0422980 AT5G64990.2 33.929 168 104 1 17 177 8 175 2.36e-34 122
Msa0422980 AT1G52280.1 37.647 170 99 3 16 178 8 177 3.58e-34 121
Msa0422980 AT1G49300.2 38.323 167 96 3 16 175 8 174 1.43e-33 120
Msa0422980 AT1G49300.1 38.323 167 96 3 16 175 8 174 1.43e-33 120
Msa0422980 AT4G09720.4 38.824 170 92 3 16 173 8 177 1.48e-33 120
Msa0422980 AT5G46025.1 54.286 105 47 1 78 181 6 110 4.38e-33 115
Msa0422980 AT4G09720.3 37.500 176 92 3 16 173 8 183 1.65e-32 117
Msa0422980 AT3G16100.1 36.970 165 97 3 16 173 8 172 1.18e-31 115
Msa0422980 AT3G09910.3 37.079 178 109 3 5 180 2 178 1.47e-31 114
Msa0422980 AT3G09910.1 37.079 178 109 3 5 180 2 178 1.47e-31 114
Msa0422980 AT3G09910.2 37.079 178 109 3 5 180 2 178 1.47e-31 114
Msa0422980 AT3G09910.5 40.252 159 92 3 14 170 11 168 4.47e-31 113
Msa0422980 AT3G09910.4 40.252 159 92 3 14 170 11 168 4.47e-31 113
Msa0422980 AT5G39620.1 31.604 212 125 5 17 221 6 204 6.44e-30 110
Msa0422980 AT2G21880.4 38.514 148 84 3 33 173 1 148 1.57e-27 103
Msa0422980 AT2G21880.3 38.514 148 84 3 33 173 1 148 1.57e-27 103
Msa0422980 AT5G55080.1 31.548 168 111 3 11 177 7 171 1.16e-25 100
Msa0422980 AT4G09720.6 41.481 135 72 3 46 173 4 138 1.46e-25 98.6
Msa0422980 AT4G09720.5 41.481 135 72 3 46 173 4 138 1.46e-25 98.6
Msa0422980 AT4G09720.2 41.481 135 72 3 46 173 4 138 1.46e-25 98.6
Msa0422980 AT2G21880.2 34.545 165 93 4 16 173 9 165 3.46e-25 98.2
Msa0422980 AT2G44690.1 35.758 165 92 5 18 170 20 182 2.45e-24 96.3
Msa0422980 AT5G20020.1 29.126 206 129 5 11 213 7 198 1.97e-23 94.0
Msa0422980 AT5G55190.1 29.126 206 129 5 11 213 7 198 3.67e-23 93.6
Msa0422980 AT5G20010.1 30.435 184 111 5 11 191 7 176 6.20e-23 92.8
Msa0422980 AT3G48040.1 32.121 165 98 5 18 170 10 172 1.22e-19 84.0
Msa0422980 AT1G20090.1 32.727 165 97 6 18 170 7 169 3.48e-19 82.4
Msa0422980 AT5G45970.1 31.361 169 102 5 18 174 8 174 3.93e-19 82.4
Msa0422980 AT4G35020.1 32.168 143 87 4 18 159 8 141 4.51e-19 82.0
Msa0422980 AT4G35020.2 32.168 143 87 4 18 159 8 141 4.51e-19 82.0
Msa0422980 AT4G35020.3 32.168 143 87 4 18 159 8 141 4.51e-19 82.0
Msa0422980 AT1G75840.1 32.121 165 98 6 18 170 8 170 5.22e-19 82.0
Msa0422980 AT5G62880.1 30.233 172 106 5 18 177 10 179 6.25e-19 82.0
Msa0422980 AT3G48040.2 36.364 121 74 3 18 137 10 128 3.90e-18 79.0
Msa0422980 AT3G51300.1 30.909 165 100 6 18 170 8 170 5.38e-18 79.3
Msa0422980 AT4G28950.1 27.222 180 119 4 17 186 7 184 1.80e-17 78.2
Msa0422980 AT5G62880.2 34.711 121 76 3 18 137 10 128 1.88e-17 77.4
Msa0422980 AT2G17800.2 30.909 165 100 6 18 170 8 170 2.35e-17 77.4
Msa0422980 AT2G17800.1 30.909 165 100 6 18 170 8 170 2.35e-17 77.4
Msa0422980 AT4G35950.1 30.909 165 100 6 18 170 8 170 2.89e-17 77.4
Msa0422980 AT4G08190.1 59.375 64 23 1 107 170 67 127 3.41e-17 75.1
Msa0422980 AT4G35020.4 33.333 114 73 3 18 130 8 119 3.06e-16 73.2
Msa0422980 AT4G35020.5 33.333 114 73 3 18 130 8 119 3.06e-16 73.2
Msa0422980 AT3G22950.1 29.167 120 79 3 17 135 18 132 4.92e-11 60.1
Msa0422980 AT3G22950.2 29.167 120 79 3 17 135 18 132 4.92e-11 60.1

Find 78 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTCTATATTAGGCTATT+TGG 0.161280 3_2:-72580460 None:intergenic
TGACAACACATGCTCTTCTT+AGG 0.168776 3_2:-72580188 None:intergenic
TTAATTAGCGGGTTTGAATT+TGG 0.271621 3_2:-72576988 None:intergenic
AATATAGTCATCATTCTTAT+AGG 0.279237 3_2:+72579906 Msa0422980:CDS
CCTGGCTGCTGATGAGAATC+AGG 0.310405 3_2:+72580100 Msa0422980:CDS
GTAATCAACCTCTCTATATT+AGG 0.319532 3_2:-72580468 None:intergenic
ATAGGTAGCCTGATTGGAAT+TGG 0.345742 3_2:+72580408 Msa0422980:three_prime_UTR
ATATTAGGCTATTTAGATAA+GGG 0.350505 3_2:-72580512 None:intergenic
CATACTACAGGGGCGCTGTT+GGG 0.366375 3_2:+72579796 Msa0422980:CDS
AGAAAGAAGAGAACCGTTCT+TGG 0.377427 3_2:-72577294 None:intergenic
GTGATCGAAGCTCGGACGTT+TGG 0.386754 3_2:-72579841 None:intergenic
ATGTAAATATACACGGGAAA+TGG 0.392454 3_2:-72580294 None:intergenic
GGCAAGAAGATTATTGTTCC+TGG 0.407195 3_2:+72580149 Msa0422980:CDS
AATTTCATAGGTAGCCTGAT+TGG 0.411337 3_2:+72580402 Msa0422980:three_prime_UTR
GACAACACATGCTCTTCTTA+GGG 0.416162 3_2:-72580187 None:intergenic
TTTGAATTTGGTTTGAAAAG+TGG 0.418073 3_2:-72576976 None:intergenic
TAGTAACCAGGCTCTATATT+AGG 0.419159 3_2:-72580527 None:intergenic
AGAGTGTTAAGGCTCAGATC+TGG 0.425788 3_2:+72577260 Msa0422980:CDS
GGGCGCTGTTGGGGCAATGT+TGG 0.427779 3_2:+72579806 Msa0422980:CDS
TATATTAGGCTATTTAGATA+AGG 0.432288 3_2:-72580513 None:intergenic
CCTGATTCTCATCAGCAGCC+AGG 0.437809 3_2:-72580100 None:intergenic
TTCTTAGGGATTTCTTGTGC+AGG 0.438762 3_2:-72580173 None:intergenic
TGAGTTTCAAACTCGTACTT+TGG 0.440485 3_2:+72577225 Msa0422980:CDS
AAAGAATTTGCTGAGAAAGA+AGG 0.441025 3_2:+72579978 Msa0422980:CDS
GAAGATAGACTACGTCTTCA+AGG 0.447575 3_2:+72577105 Msa0422980:CDS
GCATACTACAGGGGCGCTGT+TGG 0.449830 3_2:+72579795 Msa0422980:CDS
TGAAGACGTAGTCTATCTTC+TGG 0.451825 3_2:-72577102 None:intergenic
ACAAGCGCTACTAATTTCAT+AGG 0.455963 3_2:+72580390 Msa0422980:three_prime_UTR
CGCAGTTCTTCTAACCATCT+AGG 0.458553 3_2:-72579867 None:intergenic
AATTGATTAGTTTAATTAGC+GGG 0.466537 3_2:-72576999 None:intergenic
GTTTAATTTACTAGATTCCA+TGG 0.478421 3_2:+72580236 Msa0422980:three_prime_UTR
AGGAACAATAATCTTCTTGC+CGG 0.480386 3_2:-72580147 None:intergenic
ACAATGTTCCAATTCCAATC+AGG 0.483149 3_2:-72580416 None:intergenic
GCTGATGAGAATCAGGGAAA+TGG 0.488775 3_2:+72580107 Msa0422980:CDS
TATTGAACATAAGAGTGTTA+AGG 0.489565 3_2:+72577249 Msa0422980:CDS
CAGTTACAAGTGCATACTAC+AGG 0.490649 3_2:+72579784 Msa0422980:CDS
AGCATGTGTTGTCAGTAATC+CGG 0.495819 3_2:+72580197 Msa0422980:exon
GCTTCGATCACATACCTAGA+TGG 0.498381 3_2:+72579853 Msa0422980:CDS
ATTACCTCCGACTCCATCTC+AGG 0.499272 3_2:-72580352 None:intergenic
GGCAACTCAGCATCTCTGTC+CGG 0.499309 3_2:+72580128 Msa0422980:CDS
GGGATTTCTTGTGCAGGACC+AGG 0.502312 3_2:-72580167 None:intergenic
TGTTGATTTAAGACCTGAGA+TGG 0.509875 3_2:+72580339 Msa0422980:three_prime_UTR
TTAATCGGTGATTCCGCCGT+TGG 0.519747 3_2:+72577133 Msa0422980:CDS
ATACTACAGGGGCGCTGTTG+GGG 0.525539 3_2:+72579797 Msa0422980:CDS
AGAGAGGTTGATTACTGCTA+TGG 0.526309 3_2:+72580476 Msa0422980:three_prime_UTR
GCTCAGATCTGGGACACTGC+TGG 0.529753 3_2:+72577271 Msa0422980:CDS
GAGTGTTAAGGCTCAGATCT+GGG 0.538288 3_2:+72577261 Msa0422980:CDS
GCAAGAACAATGGCGAGTGC+AGG 0.539693 3_2:+72577064 Msa0422980:exon
TTCTGTCAAAACAGTCATGA+AGG 0.542515 3_2:-72580051 None:intergenic
ACAATGGCGAGTGCAGGTTA+CGG 0.545612 3_2:+72577070 Msa0422980:exon
ATGGCCAAACCATCAAAACT+TGG 0.558491 3_2:-72580275 None:intergenic
AAATAGCCTAATATAGAGCC+TGG 0.566946 3_2:+72580521 Msa0422980:three_prime_UTR
GTGGACTCAAAAGCTACAAT+CGG 0.568023 3_2:+72577199 Msa0422980:CDS
CATTGTCAACAAGAAGAACC+TGG 0.569186 3_2:+72580082 Msa0422980:CDS
TATTAGGCTATTTAGATAAG+GGG 0.572036 3_2:-72580511 None:intergenic
GGGACACTGCTGGCCAAGAA+CGG 0.580774 3_2:+72577281 Msa0422980:CDS
AGGAAACAAAAGTGATCTTG+AGG 0.580983 3_2:+72579926 Msa0422980:CDS
CTAGGTATGTGATCGAAGCT+CGG 0.584273 3_2:-72579849 None:intergenic
GAAAATCTCAGATACTAGCT+CGG 0.589018 3_2:+72577155 Msa0422980:CDS
TTGAATGATGTAAATATACA+CGG 0.596315 3_2:-72580301 None:intergenic
TGAATGATGTAAATATACAC+GGG 0.603917 3_2:-72580300 None:intergenic
AGTTACAAGTGCATACTACA+GGG 0.605565 3_2:+72579785 Msa0422980:CDS
TAATTGATTAGTTTAATTAG+CGG 0.611155 3_2:-72577000 None:intergenic
TTTAAGACCTGAGATGGAGT+CGG 0.620598 3_2:+72580345 Msa0422980:three_prime_UTR
CTGGCTGCTGATGAGAATCA+GGG 0.625486 3_2:+72580101 Msa0422980:CDS
CCAAATAGCCTAATATAGAG+AGG 0.634926 3_2:+72580460 Msa0422980:three_prime_UTR
TGACTATATTCTTGTCAGCA+TGG 0.639191 3_2:-72579893 None:intergenic
GAAATCAAAAGCAAGAACAA+TGG 0.640264 3_2:+72577054 Msa0422980:exon
ATTAGTTGCTTGCAGCGCAG+AGG 0.640396 3_2:-72580018 None:intergenic
GCAAGCAACTAATGTTGAGA+CGG 0.646912 3_2:+72580028 Msa0422980:CDS
GGTTGATTACTGCTATGGTG+TGG 0.657425 3_2:+72580481 Msa0422980:three_prime_UTR
GAAGTAATTCAGTAGTAACC+AGG 0.665431 3_2:-72580539 None:intergenic
AAGACCTGAGATGGAGTCGG+AGG 0.667296 3_2:+72580348 Msa0422980:three_prime_UTR
GTCATACGAACATAGAACCA+TGG 0.670149 3_2:-72580253 None:intergenic
TGCAAGAAACGACTTCAGCG+TGG 0.696247 3_2:+72577180 Msa0422980:CDS
GTTACAAGTGCATACTACAG+GGG 0.696627 3_2:+72579786 Msa0422980:CDS
GCAGCGTGCAGTACCCACAG+AGG 0.703658 3_2:+72579950 Msa0422980:CDS
GATAGACTACGTCTTCAAGG+TGG 0.714276 3_2:+72577108 Msa0422980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTTTTTTTTAAAAACT+CGG - chr3_2:72577920-72577939 None:intergenic 10.0%
!!! AATTATATCAAATTTAAAAC+TGG - chr3_2:72578335-72578354 None:intergenic 10.0%
!!! TAATTGATTAGTTTAATTAG+CGG - chr3_2:72577003-72577022 None:intergenic 15.0%
!! TATTCCTCAATAAAAAAAAT+TGG - chr3_2:72577556-72577575 None:intergenic 15.0%
!!! GAAGAAAAACATAAATTTTA+TGG + chr3_2:72578583-72578602 Msa0422980:intron 15.0%
!!! ACTGTTGATAAATAAATATT+TGG - chr3_2:72578947-72578966 None:intergenic 15.0%
!! GTAATTTAAATATTGGTATT+TGG - chr3_2:72579696-72579715 None:intergenic 15.0%
!! TGTACTTGTAATTTAAATAT+TGG - chr3_2:72579703-72579722 None:intergenic 15.0%
!!! AATTGATTAGTTTAATTAGC+GGG - chr3_2:72577002-72577021 None:intergenic 20.0%
!!! GTTTATTTATCTGAAGTTAA+TGG + chr3_2:72577442-72577461 Msa0422980:intron 20.0%
!!! AACACCAATTTTTTTTATTG+AGG + chr3_2:72577549-72577568 Msa0422980:intron 20.0%
!! AAAAAAATCTAGTATGTGAA+TGG + chr3_2:72577931-72577950 Msa0422980:intron 20.0%
!!! ATGATTTTTATTTCAAAGAG+TGG - chr3_2:72579435-72579454 None:intergenic 20.0%
!!! ATTTTCAAAATCAGCAATTT+TGG + chr3_2:72579507-72579526 Msa0422980:intron 20.0%
!! TTGATTGAGTAAAAAAACAT+GGG - chr3_2:72579582-72579601 None:intergenic 20.0%
!! ATTGATTGAGTAAAAAAACA+TGG - chr3_2:72579583-72579602 None:intergenic 20.0%
!!! GTTTTGTCTGATTTTATAAA+TGG + chr3_2:72579739-72579758 Msa0422980:intron 20.0%
!! AATATAGTCATCATTCTTAT+AGG + chr3_2:72579906-72579925 Msa0422980:CDS 20.0%
!!! AACATTTTATAAATGAACTC+CGG - chr3_2:72580219-72580238 None:intergenic 20.0%
!! TTGAATGATGTAAATATACA+CGG - chr3_2:72580304-72580323 None:intergenic 20.0%
!! ATATTAGGCTATTTAGATAA+GGG - chr3_2:72580515-72580534 None:intergenic 20.0%
!! TATATTAGGCTATTTAGATA+AGG - chr3_2:72580516-72580535 None:intergenic 20.0%
!!! TTTGAATTTGGTTTGAAAAG+TGG - chr3_2:72576979-72576998 None:intergenic 25.0%
!!! TATTGAACATAAGAGTGTTA+AGG + chr3_2:72577249-72577268 Msa0422980:CDS 25.0%
!!! TTGTTTATTGTTTTTGCCTA+TGG + chr3_2:72577748-72577767 Msa0422980:intron 25.0%
! TATGTGAATTAACCCATTTA+GGG + chr3_2:72577869-72577888 Msa0422980:intron 25.0%
! AGTAGAAATATTACAGTTTG+CGG + chr3_2:72578030-72578049 Msa0422980:intron 25.0%
!! TGATTTTACCATAAGTTCAA+AGG - chr3_2:72578167-72578186 None:intergenic 25.0%
!!! ACCATATTTTGATTTGAAAC+CGG - chr3_2:72578191-72578210 None:intergenic 25.0%
!!! ATGTATTGACTGATTTCAAT+TGG + chr3_2:72578266-72578285 Msa0422980:intron 25.0%
!! TCAAATTTAAAACTGGAATG+TGG - chr3_2:72578328-72578347 None:intergenic 25.0%
! TGATTATTTATAGAGCAGTT+AGG + chr3_2:72578517-72578536 Msa0422980:intron 25.0%
! GAACCAAATCATTTATTCAT+GGG - chr3_2:72578830-72578849 None:intergenic 25.0%
!! ACCTTTTGTACATATTAACA+GGG - chr3_2:72579369-72579388 None:intergenic 25.0%
!! AACCTTTTGTACATATTAAC+AGG - chr3_2:72579370-72579389 None:intergenic 25.0%
!! TATCAATAACACGTTTTCAA+AGG - chr3_2:72579484-72579503 None:intergenic 25.0%
!!! GTTTTGCACTATTTTTTCTA+CGG + chr3_2:72579620-72579639 Msa0422980:intron 25.0%
! TAAATTACAAGTACATCGAA+TGG + chr3_2:72579708-72579727 Msa0422980:intron 25.0%
!! GTTTAATTTACTAGATTCCA+TGG + chr3_2:72580236-72580255 Msa0422980:three_prime_UTR 25.0%
! TGAATGATGTAAATATACAC+GGG - chr3_2:72580303-72580322 None:intergenic 25.0%
! TATTAGGCTATTTAGATAAG+GGG - chr3_2:72580514-72580533 None:intergenic 25.0%
!! TTAATTAGCGGGTTTGAATT+TGG - chr3_2:72576991-72577010 None:intergenic 30.0%
!! TTGGTTTTCGATTTTGAATG+TGG - chr3_2:72577034-72577053 None:intergenic 30.0%
!!! TGTTCTTGCTTTTGATTTCT+TGG - chr3_2:72577053-72577072 None:intergenic 30.0%
GAAATCAAAAGCAAGAACAA+TGG + chr3_2:72577054-72577073 Msa0422980:exon 30.0%
!! TAGTATCTGAGATTTTCCAA+CGG - chr3_2:72577152-72577171 None:intergenic 30.0%
ACATCAGTCAAACTAATTCA+AGG + chr3_2:72577600-72577619 Msa0422980:intron 30.0%
GTGTCAAACAAATTCAAGAT+TGG - chr3_2:72577652-72577671 None:intergenic 30.0%
! TTTTTGCCTATGGTTTCTTT+GGG + chr3_2:72577758-72577777 Msa0422980:intron 30.0%
GTATGTGAATTAACCCATTT+AGG + chr3_2:72577868-72577887 Msa0422980:intron 30.0%
CAGATTTATGAAACTTACGA+GGG + chr3_2:72577971-72577990 Msa0422980:intron 30.0%
AGATTTATGAAACTTACGAG+GGG + chr3_2:72577972-72577991 Msa0422980:intron 30.0%
TCCATATAGTATGCTAATAG+TGG + chr3_2:72578102-72578121 Msa0422980:intron 30.0%
ACCACTATTAGCATACTATA+TGG - chr3_2:72578106-72578125 None:intergenic 30.0%
CAATGATTCCTTTGAACTTA+TGG + chr3_2:72578156-72578175 Msa0422980:intron 30.0%
GAACTTATGGTAAAATCATC+CGG + chr3_2:72578169-72578188 Msa0422980:intron 30.0%
TCCGGTTTCAAATCAAAATA+TGG + chr3_2:72578187-72578206 Msa0422980:intron 30.0%
GTTATATAAGTCCACAGATT+TGG - chr3_2:72578292-72578311 None:intergenic 30.0%
TGTTCATATACATAGTGTGT+TGG - chr3_2:72578376-72578395 None:intergenic 30.0%
ATGTAGTTGTAAAGAGAAGA+AGG + chr3_2:72578648-72578667 Msa0422980:intron 30.0%
! TATGTTGCTTAAACAAAGCT+GGG + chr3_2:72578682-72578701 Msa0422980:intron 30.0%
GGAACCAAATCATTTATTCA+TGG - chr3_2:72578831-72578850 None:intergenic 30.0%
! ACTTTACTGATTACTCACTT+TGG - chr3_2:72578855-72578874 None:intergenic 30.0%
CAGTAAAGTGAGAAAATCAA+TGG + chr3_2:72578866-72578885 Msa0422980:intron 30.0%
! AGCAAGTATCTGTTACTTAA+GGG - chr3_2:72579189-72579208 None:intergenic 30.0%
AAATACTTGTAGGGAGAAAT+GGG - chr3_2:72579230-72579249 None:intergenic 30.0%
ACCCTGTTAATATGTACAAA+AGG + chr3_2:72579365-72579384 Msa0422980:intron 30.0%
!! GCTGATTATTTTTCTGTCTT+GGG + chr3_2:72579529-72579548 Msa0422980:intron 30.0%
TCAATCAATGTTCTTCAATC+TGG + chr3_2:72579594-72579613 Msa0422980:intron 30.0%
TACTTCTGATCATTTCATCA+TGG + chr3_2:72579668-72579687 Msa0422980:intron 30.0%
!! AAAGAATTTGCTGAGAAAGA+AGG + chr3_2:72579978-72579997 Msa0422980:CDS 30.0%
ATGTAAATATACACGGGAAA+TGG - chr3_2:72580297-72580316 None:intergenic 30.0%
GTAATCAACCTCTCTATATT+AGG - chr3_2:72580471-72580490 None:intergenic 30.0%
! TCGATTTTGAATGTGGAGTT+GGG - chr3_2:72577027-72577046 None:intergenic 35.0%
! TTCGATTTTGAATGTGGAGT+TGG - chr3_2:72577028-72577047 None:intergenic 35.0%
!!! GTCTTCAAGGTGGTTTTAAT+CGG + chr3_2:72577118-72577137 Msa0422980:CDS 35.0%
GAAAATCTCAGATACTAGCT+CGG + chr3_2:72577155-72577174 Msa0422980:CDS 35.0%
TGAGTTTCAAACTCGTACTT+TGG + chr3_2:72577225-72577244 Msa0422980:CDS 35.0%
! GTTTTTGCCTATGGTTTCTT+TGG + chr3_2:72577757-72577776 Msa0422980:intron 35.0%
CGCAGGATTTAAGTAAGAAA+AGG + chr3_2:72577816-72577835 Msa0422980:intron 35.0%
! TGAATTAACCCATTTAGGGT+TGG + chr3_2:72577873-72577892 Msa0422980:intron 35.0%
GCAGATTTATGAAACTTACG+AGG + chr3_2:72577970-72577989 Msa0422980:intron 35.0%
GTTCAAAGGAATCATTGCTA+AGG - chr3_2:72578153-72578172 None:intergenic 35.0%
ATTTCAATTGGCCAAATCTG+TGG + chr3_2:72578278-72578297 Msa0422980:intron 35.0%
!! TGTTGGTAGCATTTCTAACA+TGG - chr3_2:72578359-72578378 None:intergenic 35.0%
ATTTACTTGAATGACACGTG+TGG + chr3_2:72578464-72578483 Msa0422980:intron 35.0%
! ACATTGATGGGAAATGGATT+TGG + chr3_2:72578543-72578562 Msa0422980:intron 35.0%
ATTTGGAAGTTGGGAGAAAA+TGG + chr3_2:72578560-72578579 Msa0422980:intron 35.0%
TTTGGAAGTTGGGAGAAAAT+GGG + chr3_2:72578561-72578580 Msa0422980:intron 35.0%
! GTATGTTGCTTAAACAAAGC+TGG + chr3_2:72578681-72578700 Msa0422980:intron 35.0%
TAGGAGTTACTGAGATTTCA+GGG + chr3_2:72578770-72578789 Msa0422980:intron 35.0%
CAGCCCATGAATAAATGATT+TGG + chr3_2:72578824-72578843 Msa0422980:intron 35.0%
! TTACTGATTACTCACTTTGG+AGG - chr3_2:72578852-72578871 None:intergenic 35.0%
GCACATGCATGATAAATCAT+GGG - chr3_2:72578907-72578926 None:intergenic 35.0%
TGCACATGCATGATAAATCA+TGG - chr3_2:72578908-72578927 None:intergenic 35.0%
CTCTAATTTATTGCTGGATC+AGG - chr3_2:72579019-72579038 None:intergenic 35.0%
GCAAGACTCTAATTTATTGC+TGG - chr3_2:72579025-72579044 None:intergenic 35.0%
TTACTTAAGGGAGTTAGAGT+TGG - chr3_2:72579177-72579196 None:intergenic 35.0%
! GAGCAAGTATCTGTTACTTA+AGG - chr3_2:72579190-72579209 None:intergenic 35.0%
GAAATACTTGTAGGGAGAAA+TGG - chr3_2:72579231-72579250 None:intergenic 35.0%
CCAGAAAGGAAATACTTGTA+GGG - chr3_2:72579239-72579258 None:intergenic 35.0%
ATTCTGTGATACTAGCATAC+TGG - chr3_2:72579325-72579344 None:intergenic 35.0%
!! GGCTGATTATTTTTCTGTCT+TGG + chr3_2:72579528-72579547 Msa0422980:intron 35.0%
AGTTACAAGTGCATACTACA+GGG + chr3_2:72579785-72579804 Msa0422980:CDS 35.0%
TGACTATATTCTTGTCAGCA+TGG - chr3_2:72579896-72579915 None:intergenic 35.0%
AGGAAACAAAAGTGATCTTG+AGG + chr3_2:72579926-72579945 Msa0422980:CDS 35.0%
! AATTCTTTTGCATCCTCTGT+GGG - chr3_2:72579966-72579985 None:intergenic 35.0%
! AAATTCTTTTGCATCCTCTG+TGG - chr3_2:72579967-72579986 None:intergenic 35.0%
TTCTGTCAAAACAGTCATGA+AGG - chr3_2:72580054-72580073 None:intergenic 35.0%
AGGAACAATAATCTTCTTGC+CGG - chr3_2:72580150-72580169 None:intergenic 35.0%
!! TTCGTATGACCAAGTTTTGA+TGG + chr3_2:72580266-72580285 Msa0422980:three_prime_UTR 35.0%
!! ATGACCAAGTTTTGATGGTT+TGG + chr3_2:72580271-72580290 Msa0422980:three_prime_UTR 35.0%
!! TGTTGATTTAAGACCTGAGA+TGG + chr3_2:72580339-72580358 Msa0422980:three_prime_UTR 35.0%
ACAAGCGCTACTAATTTCAT+AGG + chr3_2:72580390-72580409 Msa0422980:three_prime_UTR 35.0%
AATTTCATAGGTAGCCTGAT+TGG + chr3_2:72580402-72580421 Msa0422980:three_prime_UTR 35.0%
ACAATGTTCCAATTCCAATC+AGG - chr3_2:72580419-72580438 None:intergenic 35.0%
CCTCTCTATATTAGGCTATT+TGG - chr3_2:72580463-72580482 None:intergenic 35.0%
CCAAATAGCCTAATATAGAG+AGG + chr3_2:72580460-72580479 Msa0422980:three_prime_UTR 35.0%
AAATAGCCTAATATAGAGCC+TGG + chr3_2:72580521-72580540 Msa0422980:three_prime_UTR 35.0%
TAGTAACCAGGCTCTATATT+AGG - chr3_2:72580530-72580549 None:intergenic 35.0%
GAAGTAATTCAGTAGTAACC+AGG - chr3_2:72580542-72580561 None:intergenic 35.0%
TGAAGACGTAGTCTATCTTC+TGG - chr3_2:72577105-72577124 None:intergenic 40.0%
GAAGATAGACTACGTCTTCA+AGG + chr3_2:72577105-72577124 Msa0422980:CDS 40.0%
!! TATCTGAGATTTTCCAACGG+CGG - chr3_2:72577149-72577168 None:intergenic 40.0%
GTGGACTCAAAAGCTACAAT+CGG + chr3_2:72577199-72577218 Msa0422980:CDS 40.0%
AGAAAGAAGAGAACCGTTCT+TGG - chr3_2:72577297-72577316 None:intergenic 40.0%
ACTCATCCCAAAGAAACCAT+AGG - chr3_2:72577767-72577786 None:intergenic 40.0%
GTATGCATTCGACATGAATG+AGG - chr3_2:72578224-72578243 None:intergenic 40.0%
GTTGGATTTCATACGTCACA+AGG + chr3_2:72578486-72578505 Msa0422980:intron 40.0%
AGCAGTTAGGAAGACATTGA+TGG + chr3_2:72578530-72578549 Msa0422980:intron 40.0%
GCAGTTAGGAAGACATTGAT+GGG + chr3_2:72578531-72578550 Msa0422980:intron 40.0%
AGGAAGACATTGATGGGAAA+TGG + chr3_2:72578537-72578556 Msa0422980:intron 40.0%
! TGGGAAATGGATTTGGAAGT+TGG + chr3_2:72578550-72578569 Msa0422980:intron 40.0%
! GGGAAATGGATTTGGAAGTT+GGG + chr3_2:72578551-72578570 Msa0422980:intron 40.0%
GGGTCAGAAAGTAAGAAGAA+CGG + chr3_2:72578702-72578721 Msa0422980:intron 40.0%
GGTCAGAAAGTAAGAAGAAC+GGG + chr3_2:72578703-72578722 Msa0422980:intron 40.0%
CTAGGAGTTACTGAGATTTC+AGG + chr3_2:72578769-72578788 Msa0422980:intron 40.0%
CATGCATGATAAATCATGGG+TGG - chr3_2:72578904-72578923 None:intergenic 40.0%
GTAGTTGTGTTTAGAGGGAA+AGG - chr3_2:72579047-72579066 None:intergenic 40.0%
TAGCGGTAGTTGTGTTTAGA+GGG - chr3_2:72579052-72579071 None:intergenic 40.0%
TTAGCGGTAGTTGTGTTTAG+AGG - chr3_2:72579053-72579072 None:intergenic 40.0%
CAATAGGGGATTCAGTTTAG+CGG - chr3_2:72579069-72579088 None:intergenic 40.0%
ATGTGTGGAGAGAACAATAG+GGG - chr3_2:72579083-72579102 None:intergenic 40.0%
GATGTGTGGAGAGAACAATA+GGG - chr3_2:72579084-72579103 None:intergenic 40.0%
AGGTAGGTTATAAGGATGTG+TGG - chr3_2:72579098-72579117 None:intergenic 40.0%
ATTGGCAGAGGTAGGTTATA+AGG - chr3_2:72579106-72579125 None:intergenic 40.0%
CCCTACAAGTATTTCCTTTC+TGG + chr3_2:72579236-72579255 Msa0422980:intron 40.0%
GCCAGAAAGGAAATACTTGT+AGG - chr3_2:72579240-72579259 None:intergenic 40.0%
CAGTTACAAGTGCATACTAC+AGG + chr3_2:72579784-72579803 Msa0422980:CDS 40.0%
GTTACAAGTGCATACTACAG+GGG + chr3_2:72579786-72579805 Msa0422980:CDS 40.0%
GCAAGCAACTAATGTTGAGA+CGG + chr3_2:72580028-72580047 Msa0422980:CDS 40.0%
CATTGTCAACAAGAAGAACC+TGG + chr3_2:72580082-72580101 Msa0422980:CDS 40.0%
GGCAAGAAGATTATTGTTCC+TGG + chr3_2:72580149-72580168 Msa0422980:CDS 40.0%
TTCTTAGGGATTTCTTGTGC+AGG - chr3_2:72580176-72580195 None:intergenic 40.0%
GACAACACATGCTCTTCTTA+GGG - chr3_2:72580190-72580209 None:intergenic 40.0%
TGACAACACATGCTCTTCTT+AGG - chr3_2:72580191-72580210 None:intergenic 40.0%
AGCATGTGTTGTCAGTAATC+CGG + chr3_2:72580197-72580216 Msa0422980:exon 40.0%
GTCATACGAACATAGAACCA+TGG - chr3_2:72580256-72580275 None:intergenic 40.0%
ATGGCCAAACCATCAAAACT+TGG - chr3_2:72580278-72580297 None:intergenic 40.0%
! TTTAAGACCTGAGATGGAGT+CGG + chr3_2:72580345-72580364 Msa0422980:three_prime_UTR 40.0%
ATAGGTAGCCTGATTGGAAT+TGG + chr3_2:72580408-72580427 Msa0422980:three_prime_UTR 40.0%
! AGAGAGGTTGATTACTGCTA+TGG + chr3_2:72580476-72580495 Msa0422980:three_prime_UTR 40.0%
! GATTTTTACCACGAAGTGTG+TGG + chr3_2:72580564-72580583 Msa0422980:three_prime_UTR 40.0%
! AATGTTTTCCACACACTTCG+TGG - chr3_2:72580575-72580594 None:intergenic 40.0%
GATAGACTACGTCTTCAAGG+TGG + chr3_2:72577108-72577127 Msa0422980:CDS 45.0%
! AGAGTGTTAAGGCTCAGATC+TGG + chr3_2:72577260-72577279 Msa0422980:CDS 45.0%
GAGTGTTAAGGCTCAGATCT+GGG + chr3_2:72577261-72577280 Msa0422980:CDS 45.0%
!! GTTTGACTGATGTTGACTCG+AGG - chr3_2:72577684-72577703 None:intergenic 45.0%
!! GTTTGACTGATGTTGACTCG+AGG + chr3_2:72577684-72577703 Msa0422980:intron 45.0%
AGTTTGAGTGTGTATGAGCG+AGG + chr3_2:72577784-72577803 Msa0422980:intron 45.0%
!! TAACCCATTTAGGGTTGGCT+TGG + chr3_2:72577878-72577897 Msa0422980:intron 45.0%
!! AACCCATTTAGGGTTGGCTT+GGG + chr3_2:72577879-72577898 Msa0422980:intron 45.0%
AACCCAAGCCAACCCTAAAT+GGG - chr3_2:72577884-72577903 None:intergenic 45.0%
GCGGCATATTTGAACTTCAG+TGG + chr3_2:72578049-72578068 Msa0422980:intron 45.0%
CATACTGCCTGACTTAACTC+AGG + chr3_2:72578239-72578258 Msa0422980:intron 45.0%
CATGTCACCTGAGTTAAGTC+AGG - chr3_2:72578249-72578268 None:intergenic 45.0%
ACTTGAATGACACGTGTGGT+TGG + chr3_2:72578468-72578487 Msa0422980:intron 45.0%
CTCAGTAACTCCTAGCTGTT+GGG - chr3_2:72578764-72578783 None:intergenic 45.0%
TCTCAGTAACTCCTAGCTGT+TGG - chr3_2:72578765-72578784 None:intergenic 45.0%
TGTGAGCAACTCACTGTAGA+GGG - chr3_2:72578987-72579006 None:intergenic 45.0%
TTGTGAGCAACTCACTGTAG+AGG - chr3_2:72578988-72579007 None:intergenic 45.0%
CAGTGAGTTGCTCACAATAG+AGG + chr3_2:72578991-72579010 Msa0422980:intron 45.0%
GGATGTGTGGAGAGAACAAT+AGG - chr3_2:72579085-72579104 None:intergenic 45.0%
AGATAGCACTCTCACAGGAT+TGG - chr3_2:72579124-72579143 None:intergenic 45.0%
!! AATCCTGTGAGAGTGCTATC+TGG + chr3_2:72579123-72579142 Msa0422980:intron 45.0%
GTAACAGATACTTGCTCAGC+TGG + chr3_2:72579193-72579212 Msa0422980:intron 45.0%
GCTGTGTGCTTACAGACATT+GGG + chr3_2:72579258-72579277 Msa0422980:intron 45.0%
GGTGCATGAGTTGTACACTA+AGG - chr3_2:72579348-72579367 None:intergenic 45.0%
CTAGGTATGTGATCGAAGCT+CGG - chr3_2:72579852-72579871 None:intergenic 45.0%
GCTTCGATCACATACCTAGA+TGG + chr3_2:72579853-72579872 Msa0422980:CDS 45.0%
CGCAGTTCTTCTAACCATCT+AGG - chr3_2:72579870-72579889 None:intergenic 45.0%
GCTGATGAGAATCAGGGAAA+TGG + chr3_2:72580107-72580126 Msa0422980:CDS 45.0%
GGTTGATTACTGCTATGGTG+TGG + chr3_2:72580481-72580500 Msa0422980:three_prime_UTR 45.0%
ACAATGGCGAGTGCAGGTTA+CGG + chr3_2:72577070-72577089 Msa0422980:exon 50.0%
TTAATCGGTGATTCCGCCGT+TGG + chr3_2:72577133-72577152 Msa0422980:CDS 50.0%
TGCAAGAAACGACTTCAGCG+TGG + chr3_2:72577180-72577199 Msa0422980:CDS 50.0%
!! GACTGATGTTGACTCGAGGT+TGG + chr3_2:72577688-72577707 Msa0422980:intron 50.0%
GAACCCAAGCCAACCCTAAA+TGG - chr3_2:72577885-72577904 None:intergenic 50.0%
!! TTAGGGTTGGCTTGGGTTCT+TGG + chr3_2:72577886-72577905 Msa0422980:intron 50.0%
AGCGATACAGACTGCAGAGT+AGG - chr3_2:72578617-72578636 None:intergenic 50.0%
CATAACTCCTCCCAACAGCT+AGG + chr3_2:72578751-72578770 Msa0422980:intron 50.0%
AGTAACTCCTAGCTGTTGGG+AGG - chr3_2:72578761-72578780 None:intergenic 50.0%
AGACCAGATAGCACTCTCAC+AGG - chr3_2:72579129-72579148 None:intergenic 50.0%
GGGAGAAATGGGTGAGTGTT+TGG - chr3_2:72579219-72579238 None:intergenic 50.0%
CTGTAAGCACACAGCCAGAA+AGG - chr3_2:72579253-72579272 None:intergenic 50.0%
GGCTGTGTGCTTACAGACAT+TGG + chr3_2:72579257-72579276 Msa0422980:intron 50.0%
ATTAGTTGCTTGCAGCGCAG+AGG - chr3_2:72580021-72580040 None:intergenic 50.0%
CTGGCTGCTGATGAGAATCA+GGG + chr3_2:72580101-72580120 Msa0422980:CDS 50.0%
ATTACCTCCGACTCCATCTC+AGG - chr3_2:72580355-72580374 None:intergenic 50.0%
GCAAGAACAATGGCGAGTGC+AGG + chr3_2:72577064-72577083 Msa0422980:exon 55.0%
! CTCACAGGATTGGCAGAGGT+AGG - chr3_2:72579114-72579133 None:intergenic 55.0%
! CACTCTCACAGGATTGGCAG+AGG - chr3_2:72579118-72579137 None:intergenic 55.0%
!! CATACTACAGGGGCGCTGTT+GGG + chr3_2:72579796-72579815 Msa0422980:CDS 55.0%
!! ATACTACAGGGGCGCTGTTG+GGG + chr3_2:72579797-72579816 Msa0422980:CDS 55.0%
GTGATCGAAGCTCGGACGTT+TGG - chr3_2:72579844-72579863 None:intergenic 55.0%
CCTGATTCTCATCAGCAGCC+AGG - chr3_2:72580103-72580122 None:intergenic 55.0%
CCTGGCTGCTGATGAGAATC+AGG + chr3_2:72580100-72580119 Msa0422980:CDS 55.0%
GGCAACTCAGCATCTCTGTC+CGG + chr3_2:72580128-72580147 Msa0422980:CDS 55.0%
GGGATTTCTTGTGCAGGACC+AGG - chr3_2:72580170-72580189 None:intergenic 55.0%
AAGACCTGAGATGGAGTCGG+AGG + chr3_2:72580348-72580367 Msa0422980:three_prime_UTR 55.0%
! GCTCAGATCTGGGACACTGC+TGG + chr3_2:72577271-72577290 Msa0422980:CDS 60.0%
GGGACACTGCTGGCCAAGAA+CGG + chr3_2:72577281-72577300 Msa0422980:CDS 60.0%
GAGCGAGGTGTGATTGACGC+AGG + chr3_2:72577799-72577818 Msa0422980:intron 60.0%
!! GCATACTACAGGGGCGCTGT+TGG + chr3_2:72579795-72579814 Msa0422980:CDS 60.0%
! GGGCGCTGTTGGGGCAATGT+TGG + chr3_2:72579806-72579825 Msa0422980:CDS 65.0%
GCAGCGTGCAGTACCCACAG+AGG + chr3_2:72579950-72579969 Msa0422980:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 72576976 72580603 72576976 ID=Msa0422980;Name=Msa0422980
chr3_2 mRNA 72576976 72580603 72576976 ID=Msa0422980-mRNA-1;Parent=Msa0422980;Name=Msa0422980-mRNA-1;_AED=0.06;_eAED=0.06;_QI=97|1|1|1|1|1|2|389|222
chr3_2 exon 72576976 72577302 72576976 ID=Msa0422980-mRNA-1:exon:17925;Parent=Msa0422980-mRNA-1
chr3_2 exon 72579776 72580603 72579776 ID=Msa0422980-mRNA-1:exon:17926;Parent=Msa0422980-mRNA-1
chr3_2 five_prime_UTR 72576976 72577072 72576976 ID=Msa0422980-mRNA-1:five_prime_utr;Parent=Msa0422980-mRNA-1
chr3_2 CDS 72577073 72577302 72577073 ID=Msa0422980-mRNA-1:cds;Parent=Msa0422980-mRNA-1
chr3_2 CDS 72579776 72580214 72579776 ID=Msa0422980-mRNA-1:cds;Parent=Msa0422980-mRNA-1
chr3_2 three_prime_UTR 72580215 72580603 72580215 ID=Msa0422980-mRNA-1:three_prime_utr;Parent=Msa0422980-mRNA-1
Gene Sequence

>Msa0422980

ATGGCGAGTGCAGGTTACGGTGATGCAAACCAGAAGATAGACTACGTCTTCAAGGTGGTTTTAATCGGTGATTCCGCCGTTGGAAAATCTCAGATACTAGCTCGGTTTGCAAGAAACGACTTCAGCGTGGACTCAAAAGCTACAATCGGTGTTGAGTTTCAAACTCGTACTTTGGTTATTGAACATAAGAGTGTTAAGGCTCAGATCTGGGACACTGCTGGCCAAGAACGATATAGAGCAGTTACAAGTGCATACTACAGGGGCGCTGTTGGGGCAATGTTGGTTTATGACATTACCAAACGTCCGAGCTTCGATCACATACCTAGATGGTTAGAAGAACTGCGCAACCATGCTGACAAGAATATAGTCATCATTCTTATAGGAAACAAAAGTGATCTTGAGGAGCAGCGTGCAGTACCCACAGAGGATGCAAAAGAATTTGCTGAGAAAGAAGGCTTATTTTTCTTAGAGACCTCTGCGCTGCAAGCAACTAATGTTGAGACGGCCTTCATGACTGTTTTGACAGAAATATTTAACATTGTCAACAAGAAGAACCTGGCTGCTGATGAGAATCAGGGAAATGGCAACTCAGCATCTCTGTCCGGCAAGAAGATTATTGTTCCTGGTCCTGCACAAGAAATCCCTAAGAAGAGCATGTGTTGTCAGTAA
Protein sequence

>Msa0422980

MASAGYGDANQKIDYVFKVVLIGDSAVGKSQILARFARNDFSVDSKATIGVEFQTRTLVIEHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRPSFDHIPRWLEELRNHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAEKEGLFFLETSALQATNVETAFMTVLTEIFNIVNKKNLAADENQGNGNSASLSGKKIIVPGPAQEIPKKSMCCQ*