Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426610 | XP_013461496.1 | 92.357 | 157 | 9 | 2 | 1 | 155 | 1 | 156 | 2.35e-99 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426610 | sp|Q9FPR6|ARR17_ARATH | 72.308 | 130 | 36 | 0 | 19 | 148 | 21 | 150 | 2.39e-63 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426610 | A0A072V1G2 | 92.357 | 157 | 9 | 2 | 1 | 155 | 1 | 156 | 1.12e-99 | 292 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0426610 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0426610 | Msa0472900 | 0.955002 | 8.242160e-113 | -8.615850e-47 |
| Msa0426610 | Msa0517390 | 0.905673 | 3.348300e-80 | -8.615850e-47 |
| Msa0426610 | Msa1032450 | 0.801535 | 8.599890e-49 | -8.615850e-47 |
| Msa0426610 | Msa1037900 | 0.800669 | 1.293288e-48 | -8.615850e-47 |
| Msa0426610 | Msa1081570 | 0.818103 | 2.334440e-52 | -8.615850e-47 |
| Msa0426610 | Msa1127140 | 0.825140 | 5.512859e-54 | -8.615850e-47 |
| Msa0426610 | Msa1129960 | 0.807072 | 6.042311e-50 | -8.615850e-47 |
| Msa0426610 | Msa1166400 | 0.827147 | 1.836940e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426610 | MtrunA17_Chr3g0128691 | 92.357 | 157 | 9 | 2 | 1 | 155 | 1 | 156 | 2.16e-103 | 292 |
| Msa0426610 | MtrunA17_Chr3g0118211 | 60.769 | 130 | 50 | 1 | 19 | 148 | 24 | 152 | 7.71e-55 | 171 |
| Msa0426610 | MtrunA17_Chr1g0170741 | 59.259 | 135 | 53 | 1 | 14 | 146 | 4 | 138 | 2.77e-53 | 167 |
| Msa0426610 | MtrunA17_Chr4g0059571 | 60.000 | 130 | 51 | 1 | 19 | 148 | 27 | 155 | 6.94e-53 | 166 |
| Msa0426610 | MtrunA17_Chr5g0414931 | 60.606 | 132 | 47 | 2 | 19 | 146 | 17 | 147 | 3.92e-52 | 165 |
| Msa0426610 | MtrunA17_Chr3g0082861 | 55.714 | 140 | 48 | 2 | 19 | 147 | 5 | 141 | 5.80e-52 | 162 |
| Msa0426610 | MtrunA17_Chr8g0352871 | 57.353 | 136 | 51 | 1 | 19 | 147 | 10 | 145 | 8.72e-52 | 162 |
| Msa0426610 | MtrunA17_Chr7g0256551 | 59.091 | 132 | 46 | 2 | 19 | 142 | 10 | 141 | 1.20e-50 | 162 |
| Msa0426610 | MtrunA17_Chr3g0124861 | 53.191 | 141 | 48 | 2 | 19 | 142 | 23 | 162 | 5.48e-46 | 150 |
| Msa0426610 | MtrunA17_Chr4g0021731 | 60.256 | 78 | 30 | 1 | 19 | 96 | 12 | 88 | 1.40e-27 | 98.6 |
| Msa0426610 | MtrunA17_Chr4g0030271 | 34.959 | 123 | 70 | 1 | 20 | 142 | 91 | 203 | 6.71e-16 | 73.9 |
| Msa0426610 | MtrunA17_Chr1g0181811 | 34.959 | 123 | 70 | 1 | 20 | 142 | 87 | 199 | 6.10e-15 | 70.9 |
| Msa0426610 | MtrunA17_Chr3g0127941 | 30.645 | 124 | 74 | 2 | 20 | 142 | 58 | 170 | 5.80e-14 | 68.2 |
| Msa0426610 | MtrunA17_Chr8g0345901 | 30.894 | 123 | 75 | 1 | 20 | 142 | 38 | 150 | 2.45e-13 | 66.2 |
| Msa0426610 | MtrunA17_Chr7g0276361 | 30.894 | 123 | 75 | 1 | 20 | 142 | 16 | 128 | 3.92e-13 | 65.9 |
| Msa0426610 | MtrunA17_Chr8g0376881 | 28.906 | 128 | 78 | 2 | 20 | 147 | 31 | 145 | 7.76e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426610 | AT3G56380.1 | 72.308 | 130 | 36 | 0 | 19 | 148 | 21 | 150 | 2.43e-64 | 194 |
| Msa0426610 | AT3G56380.2 | 72.519 | 131 | 35 | 1 | 19 | 148 | 21 | 151 | 4.88e-63 | 191 |
| Msa0426610 | AT2G40670.1 | 70.896 | 134 | 33 | 2 | 19 | 148 | 30 | 161 | 7.35e-63 | 191 |
| Msa0426610 | AT2G40670.2 | 71.111 | 135 | 32 | 3 | 19 | 148 | 30 | 162 | 1.51e-61 | 187 |
| Msa0426610 | AT1G10470.3 | 61.719 | 128 | 48 | 1 | 19 | 146 | 21 | 147 | 3.43e-53 | 169 |
| Msa0426610 | AT1G59940.1 | 58.647 | 133 | 54 | 1 | 14 | 146 | 29 | 160 | 5.00e-53 | 168 |
| Msa0426610 | AT1G10470.1 | 61.719 | 128 | 48 | 1 | 19 | 146 | 35 | 161 | 6.37e-53 | 168 |
| Msa0426610 | AT1G59940.2 | 58.647 | 133 | 54 | 1 | 14 | 146 | 121 | 252 | 7.45e-52 | 167 |
| Msa0426610 | AT3G48100.1 | 57.364 | 129 | 55 | 0 | 19 | 147 | 26 | 154 | 1.34e-51 | 162 |
| Msa0426610 | AT5G62920.1 | 58.955 | 134 | 54 | 1 | 19 | 152 | 26 | 158 | 3.22e-51 | 162 |
| Msa0426610 | AT3G57040.2 | 53.623 | 138 | 55 | 1 | 19 | 147 | 10 | 147 | 6.46e-51 | 162 |
| Msa0426610 | AT3G57040.1 | 53.623 | 138 | 55 | 1 | 19 | 147 | 10 | 147 | 6.46e-51 | 162 |
| Msa0426610 | AT2G41310.1 | 51.724 | 145 | 63 | 2 | 10 | 147 | 1 | 145 | 2.33e-50 | 161 |
| Msa0426610 | AT1G74890.1 | 59.091 | 132 | 53 | 1 | 19 | 150 | 19 | 149 | 5.99e-50 | 159 |
| Msa0426610 | AT1G19050.1 | 58.015 | 131 | 52 | 2 | 19 | 148 | 25 | 153 | 3.46e-49 | 157 |
| Msa0426610 | AT1G10470.2 | 50.000 | 74 | 33 | 3 | 75 | 146 | 14 | 85 | 3.19e-15 | 69.7 |
| Msa0426610 | AT5G24470.1 | 31.452 | 124 | 73 | 2 | 20 | 142 | 52 | 164 | 7.07e-14 | 68.2 |
| Msa0426610 | AT5G02810.1 | 31.707 | 123 | 74 | 1 | 20 | 142 | 80 | 192 | 2.13e-12 | 64.3 |
| Msa0426610 | AT5G60100.7 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 2.30e-12 | 63.9 |
| Msa0426610 | AT5G60100.6 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 2.30e-12 | 63.9 |
| Msa0426610 | AT5G60100.4 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 2.30e-12 | 63.9 |
| Msa0426610 | AT5G60100.2 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 2.32e-12 | 63.9 |
| Msa0426610 | AT5G60100.5 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 5.29e-12 | 62.8 |
| Msa0426610 | AT5G60100.3 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 5.29e-12 | 62.8 |
| Msa0426610 | AT5G60100.1 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 5.29e-12 | 62.8 |
| Msa0426610 | AT2G46790.3 | 28.226 | 124 | 79 | 1 | 19 | 142 | 38 | 151 | 1.90e-11 | 61.2 |
| Msa0426610 | AT2G46790.1 | 28.226 | 124 | 79 | 1 | 19 | 142 | 38 | 151 | 2.29e-11 | 61.2 |
| Msa0426610 | AT5G07210.2 | 30.081 | 123 | 72 | 3 | 20 | 142 | 18 | 126 | 3.30e-11 | 60.8 |
Find 46 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGAAGGCATTGGAGTATT+TGG | 0.158019 | 3_2:-77045932 | Msa0426610:CDS |
| GACAGGCCAGCTGATGAATT+TGG | 0.201243 | 3_2:-77045311 | Msa0426610:CDS |
| ACAGTGACAACTGCTGAAAA+TGG | 0.248549 | 3_2:-77045955 | Msa0426610:intron |
| CTGAAGGCATTGGAGTATTT+GGG | 0.249714 | 3_2:-77045931 | Msa0426610:CDS |
| CTCCTAAGCATATCTTATTA+AGG | 0.319448 | 3_2:+77045232 | None:intergenic |
| GTAGGGACCCAAAGTGAATT+TGG | 0.331645 | 3_2:-77045735 | Msa0426610:intron |
| AATTACTTGTTGATCCTTGT+TGG | 0.359191 | 3_2:+77045487 | None:intergenic |
| TCAAAGTGGGTGATGGAAAA+TGG | 0.361841 | 3_2:-77046254 | Msa0426610:CDS |
| AGGATGTTGTACTCTAGTTT+AGG | 0.370041 | 3_2:-77045186 | None:intergenic |
| TGAGTTGCTTAAGAAAATTA+AGG | 0.374516 | 3_2:-77045675 | Msa0426610:intron |
| ACAGGCCAGCTGATGAATTT+GGG | 0.393986 | 3_2:-77045310 | Msa0426610:CDS |
| TACTGCATGCCAGGGATGAC+TGG | 0.411671 | 3_2:-77045701 | Msa0426610:CDS |
| GTGATGACCAAATTCACTTT+GGG | 0.424646 | 3_2:+77045728 | None:intergenic |
| ATCACAGACTACTGCATGCC+AGG | 0.428078 | 3_2:-77045710 | Msa0426610:CDS |
| TTCTTCTTCAAAGTGGGTGA+TGG | 0.456607 | 3_2:-77046261 | Msa0426610:CDS |
| CTGATTCTTCTTCTTCAAAG+TGG | 0.467692 | 3_2:-77046268 | Msa0426610:CDS |
| TGATTCTTCTTCTTCAAAGT+GGG | 0.471982 | 3_2:-77046267 | Msa0426610:CDS |
| ACCTTCCCAAATTCATCAGC+TGG | 0.476038 | 3_2:+77045305 | None:intergenic |
| TCAGATGACATGATCACAAC+AGG | 0.480037 | 3_2:+77045517 | None:intergenic |
| TCAGCAATCATCTGTGATGA+AGG | 0.481432 | 3_2:-77045545 | Msa0426610:intron |
| TGTGATGACCAAATTCACTT+TGG | 0.486577 | 3_2:+77045727 | None:intergenic |
| GAACAGAACACTTTGGAGAA+TGG | 0.490659 | 3_2:-77045895 | Msa0426610:CDS |
| GGCCTTAATAAGATATGCTT+AGG | 0.492435 | 3_2:-77045234 | Msa0426610:three_prime_UTR |
| GCATATCTTATTAAGGCCTA+AGG | 0.498738 | 3_2:+77045239 | None:intergenic |
| CAGTGACAACTGCTGAAAAT+GGG | 0.502968 | 3_2:-77045954 | Msa0426610:CDS |
| TTTACATCAGATTGTTTGAG+AGG | 0.513388 | 3_2:+77045340 | None:intergenic |
| TGAAAATGGGCTGAAGGCAT+TGG | 0.515465 | 3_2:-77045941 | Msa0426610:CDS |
| AACTCATAGCCAGTCATCCC+TGG | 0.516855 | 3_2:+77045692 | None:intergenic |
| AAAAGCAGGTGTATGGAAGA+AGG | 0.535716 | 3_2:-77045385 | Msa0426610:intron |
| AAAGCAGGTGTATGGAAGAA+GGG | 0.542181 | 3_2:-77045384 | Msa0426610:intron |
| CATATCTTATTAAGGCCTAA+GGG | 0.549802 | 3_2:+77045240 | None:intergenic |
| AACTGCTGAAAATGGGCTGA+AGG | 0.568007 | 3_2:-77045947 | Msa0426610:CDS |
| CAATGCAAGATATCACCCTT+AGG | 0.568702 | 3_2:-77045255 | Msa0426610:three_prime_UTR |
| AATAAGATATGCTTAGGAGT+AGG | 0.581556 | 3_2:-77045228 | Msa0426610:three_prime_UTR |
| CTCAAGAATTCCTCTTGCAA+AGG | 0.589496 | 3_2:-77046167 | Msa0426610:intron |
| GCCAGCTGATGAATTTGGGA+AGG | 0.598518 | 3_2:-77045306 | Msa0426610:CDS |
| AAGCAGGTGTATGGAAGAAG+GGG | 0.612241 | 3_2:-77045383 | Msa0426610:intron |
| TCACAGACTACTGCATGCCA+GGG | 0.612620 | 3_2:-77045709 | Msa0426610:CDS |
| CTTTGCAAGAGGAATTCTTG+AGG | 0.621330 | 3_2:+77046168 | None:intergenic |
| TCTGATGTAAAACAACTGAC+AGG | 0.621647 | 3_2:-77045328 | Msa0426610:CDS |
| TCATCAACAGCAAGAACATG+AGG | 0.625979 | 3_2:+77046224 | None:intergenic |
| AAGTGGTGAACAGAACACTT+TGG | 0.626039 | 3_2:-77045902 | Msa0426610:CDS |
| GAGTATTTGGGCTTGTCAAG+TGG | 0.627865 | 3_2:-77045919 | Msa0426610:CDS |
| GGTGTACGTACCTTTGCAAG+AGG | 0.636893 | 3_2:+77046157 | None:intergenic |
| GCAATCATCTGTGATGAAGG+AGG | 0.667691 | 3_2:-77045542 | Msa0426610:CDS |
| CATCTGAGAATATACCAACA+AGG | 0.683899 | 3_2:-77045501 | Msa0426610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGAATATAACAGAAAA+TGG | + | chr3_2:77045345-77045364 | None:intergenic | 15.0% |
| !! | AGAAAAAGATACAAAAAAAA+TGG | + | chr3_2:77046024-77046043 | None:intergenic | 15.0% |
| !! | AAAAAGAATATAACAGAAAA+TGG | + | chr3_2:77045345-77045364 | None:intergenic | 15.0% |
| !! | AGAAAAAGATACAAAAAAAA+TGG | + | chr3_2:77046024-77046043 | None:intergenic | 15.0% |
| !!! | TGATGTTTGATGTTTTTTTT+TGG | - | chr3_2:77045432-77045451 | Msa0426610:intron | 20.0% |
| !!! | TTTTTTTTTGGTCCATATTT+TGG | - | chr3_2:77045444-77045463 | Msa0426610:intron | 20.0% |
| !! | TGAAAATAATATCCAATTTG+GGG | + | chr3_2:77045900-77045919 | None:intergenic | 20.0% |
| !! | CTGAAAATAATATCCAATTT+GGG | + | chr3_2:77045901-77045920 | None:intergenic | 20.0% |
| !!! | TGATGTTTGATGTTTTTTTT+TGG | - | chr3_2:77045432-77045451 | Msa0426610:intron | 20.0% |
| !!! | TTTTTTTTTGGTCCATATTT+TGG | - | chr3_2:77045444-77045463 | Msa0426610:intron | 20.0% |
| !! | TGAAAATAATATCCAATTTG+GGG | + | chr3_2:77045900-77045919 | None:intergenic | 20.0% |
| !! | CTGAAAATAATATCCAATTT+GGG | + | chr3_2:77045901-77045920 | None:intergenic | 20.0% |
| !!! | GTGTTTTGTTAGTAACATTT+TGG | + | chr3_2:77045625-77045644 | None:intergenic | 25.0% |
| ! | TGAGTTGCTTAAGAAAATTA+AGG | - | chr3_2:77045787-77045806 | Msa0426610:intron | 25.0% |
| ! | GCTGAAAATAATATCCAATT+TGG | + | chr3_2:77045902-77045921 | None:intergenic | 25.0% |
| !!! | GTGTTTTGTTAGTAACATTT+TGG | + | chr3_2:77045625-77045644 | None:intergenic | 25.0% |
| ! | TGAGTTGCTTAAGAAAATTA+AGG | - | chr3_2:77045787-77045806 | Msa0426610:intron | 25.0% |
| ! | GCTGAAAATAATATCCAATT+TGG | + | chr3_2:77045902-77045921 | None:intergenic | 25.0% |
| TGATTCTTCTTCTTCAAAGT+GGG | - | chr3_2:77045195-77045214 | Msa0426610:three_prime_UTR | 30.0% | |
| CAAACAGAATCACCAAAATA+TGG | + | chr3_2:77045459-77045478 | None:intergenic | 30.0% | |
| GTGATTCTGTTTGATTGAAT+GGG | - | chr3_2:77045466-77045485 | Msa0426610:intron | 30.0% | |
| !!! | TGACTATTTCTGGTTTTTGT+AGG | - | chr3_2:77045709-77045728 | Msa0426610:CDS | 30.0% |
| !!! | GACTATTTCTGGTTTTTGTA+GGG | - | chr3_2:77045710-77045729 | Msa0426610:CDS | 30.0% |
| AAATAATATCCAATTTGGGG+TGG | + | chr3_2:77045897-77045916 | None:intergenic | 30.0% | |
| ! | AATTACTTGTTGATCCTTGT+TGG | + | chr3_2:77045978-77045997 | None:intergenic | 30.0% |
| TTTACATCAGATTGTTTGAG+AGG | + | chr3_2:77046125-77046144 | None:intergenic | 30.0% | |
| CATATCTTATTAAGGCCTAA+GGG | + | chr3_2:77046225-77046244 | None:intergenic | 30.0% | |
| CTCCTAAGCATATCTTATTA+AGG | + | chr3_2:77046233-77046252 | None:intergenic | 30.0% | |
| AATAAGATATGCTTAGGAGT+AGG | - | chr3_2:77046234-77046253 | Msa0426610:CDS | 30.0% | |
| !! | GAATGCATATCATTGTTTTG+AGG | - | chr3_2:77046256-77046275 | Msa0426610:CDS | 30.0% |
| TGATTCTTCTTCTTCAAAGT+GGG | - | chr3_2:77045195-77045214 | Msa0426610:three_prime_UTR | 30.0% | |
| CAAACAGAATCACCAAAATA+TGG | + | chr3_2:77045459-77045478 | None:intergenic | 30.0% | |
| GTGATTCTGTTTGATTGAAT+GGG | - | chr3_2:77045466-77045485 | Msa0426610:intron | 30.0% | |
| !!! | TGACTATTTCTGGTTTTTGT+AGG | - | chr3_2:77045709-77045728 | Msa0426610:CDS | 30.0% |
| !!! | GACTATTTCTGGTTTTTGTA+GGG | - | chr3_2:77045710-77045729 | Msa0426610:CDS | 30.0% |
| AAATAATATCCAATTTGGGG+TGG | + | chr3_2:77045897-77045916 | None:intergenic | 30.0% | |
| ! | AATTACTTGTTGATCCTTGT+TGG | + | chr3_2:77045978-77045997 | None:intergenic | 30.0% |
| TTTACATCAGATTGTTTGAG+AGG | + | chr3_2:77046125-77046144 | None:intergenic | 30.0% | |
| CATATCTTATTAAGGCCTAA+GGG | + | chr3_2:77046225-77046244 | None:intergenic | 30.0% | |
| CTCCTAAGCATATCTTATTA+AGG | + | chr3_2:77046233-77046252 | None:intergenic | 30.0% | |
| AATAAGATATGCTTAGGAGT+AGG | - | chr3_2:77046234-77046253 | Msa0426610:CDS | 30.0% | |
| !! | GAATGCATATCATTGTTTTG+AGG | - | chr3_2:77046256-77046275 | Msa0426610:CDS | 30.0% |
| CTGATTCTTCTTCTTCAAAG+TGG | - | chr3_2:77045194-77045213 | Msa0426610:three_prime_UTR | 35.0% | |
| AAAATGGTTGAGTGAGAGAT+AGG | + | chr3_2:77045329-77045348 | None:intergenic | 35.0% | |
| GGTGATTCTGTTTGATTGAA+TGG | - | chr3_2:77045465-77045484 | Msa0426610:intron | 35.0% | |
| !! | TGATTGAATGGGCTTTTTGT+TGG | - | chr3_2:77045477-77045496 | Msa0426610:intron | 35.0% |
| TGCTAACAAGTGACTATTTC+TGG | - | chr3_2:77045699-77045718 | Msa0426610:CDS | 35.0% | |
| GTGATGACCAAATTCACTTT+GGG | + | chr3_2:77045737-77045756 | None:intergenic | 35.0% | |
| TGTGATGACCAAATTCACTT+TGG | + | chr3_2:77045738-77045757 | None:intergenic | 35.0% | |
| CATCTGAGAATATACCAACA+AGG | - | chr3_2:77045961-77045980 | Msa0426610:intron | 35.0% | |
| AAAAATGGCATTGTTAGTGC+TGG | + | chr3_2:77046009-77046028 | None:intergenic | 35.0% | |
| TCTGATGTAAAACAACTGAC+AGG | - | chr3_2:77046134-77046153 | Msa0426610:intron | 35.0% | |
| GCATATCTTATTAAGGCCTA+AGG | + | chr3_2:77046226-77046245 | None:intergenic | 35.0% | |
| GGCCTTAATAAGATATGCTT+AGG | - | chr3_2:77046228-77046247 | Msa0426610:CDS | 35.0% | |
| CTGATTCTTCTTCTTCAAAG+TGG | - | chr3_2:77045194-77045213 | Msa0426610:three_prime_UTR | 35.0% | |
| AAAATGGTTGAGTGAGAGAT+AGG | + | chr3_2:77045329-77045348 | None:intergenic | 35.0% | |
| GGTGATTCTGTTTGATTGAA+TGG | - | chr3_2:77045465-77045484 | Msa0426610:intron | 35.0% | |
| !! | TGATTGAATGGGCTTTTTGT+TGG | - | chr3_2:77045477-77045496 | Msa0426610:intron | 35.0% |
| TGCTAACAAGTGACTATTTC+TGG | - | chr3_2:77045699-77045718 | Msa0426610:CDS | 35.0% | |
| GTGATGACCAAATTCACTTT+GGG | + | chr3_2:77045737-77045756 | None:intergenic | 35.0% | |
| TGTGATGACCAAATTCACTT+TGG | + | chr3_2:77045738-77045757 | None:intergenic | 35.0% | |
| CATCTGAGAATATACCAACA+AGG | - | chr3_2:77045961-77045980 | Msa0426610:intron | 35.0% | |
| AAAAATGGCATTGTTAGTGC+TGG | + | chr3_2:77046009-77046028 | None:intergenic | 35.0% | |
| TCTGATGTAAAACAACTGAC+AGG | - | chr3_2:77046134-77046153 | Msa0426610:intron | 35.0% | |
| GCATATCTTATTAAGGCCTA+AGG | + | chr3_2:77046226-77046245 | None:intergenic | 35.0% | |
| GGCCTTAATAAGATATGCTT+AGG | - | chr3_2:77046228-77046247 | Msa0426610:CDS | 35.0% | |
| TTCTTCTTCAAAGTGGGTGA+TGG | - | chr3_2:77045201-77045220 | Msa0426610:three_prime_UTR | 40.0% | |
| !! | TCAAAGTGGGTGATGGAAAA+TGG | - | chr3_2:77045208-77045227 | Msa0426610:three_prime_UTR | 40.0% |
| TCATCAACAGCAAGAACATG+AGG | + | chr3_2:77045241-77045260 | None:intergenic | 40.0% | |
| CTTTGCAAGAGGAATTCTTG+AGG | + | chr3_2:77045297-77045316 | None:intergenic | 40.0% | |
| CTCAAGAATTCCTCTTGCAA+AGG | - | chr3_2:77045295-77045314 | Msa0426610:CDS | 40.0% | |
| ACAGTGACAACTGCTGAAAA+TGG | - | chr3_2:77045507-77045526 | Msa0426610:CDS | 40.0% | |
| CAGTGACAACTGCTGAAAAT+GGG | - | chr3_2:77045508-77045527 | Msa0426610:CDS | 40.0% | |
| !! | CTGAAGGCATTGGAGTATTT+GGG | - | chr3_2:77045531-77045550 | Msa0426610:CDS | 40.0% |
| AAGTGGTGAACAGAACACTT+TGG | - | chr3_2:77045560-77045579 | Msa0426610:intron | 40.0% | |
| ! | GAACAGAACACTTTGGAGAA+TGG | - | chr3_2:77045567-77045586 | Msa0426610:intron | 40.0% |
| TAACACTAACCACCCCAAAT+TGG | - | chr3_2:77045885-77045904 | Msa0426610:intron | 40.0% | |
| TCAGCAATCATCTGTGATGA+AGG | - | chr3_2:77045917-77045936 | Msa0426610:CDS | 40.0% | |
| TCAGATGACATGATCACAAC+AGG | + | chr3_2:77045948-77045967 | None:intergenic | 40.0% | |
| CAGCACAACAATGATTGAGT+AGG | + | chr3_2:77046056-77046075 | None:intergenic | 40.0% | |
| CATTGTTGTGCTGAAAAAGC+AGG | - | chr3_2:77046063-77046082 | Msa0426610:intron | 40.0% | |
| AAAAGCAGGTGTATGGAAGA+AGG | - | chr3_2:77046077-77046096 | Msa0426610:intron | 40.0% | |
| AAAGCAGGTGTATGGAAGAA+GGG | - | chr3_2:77046078-77046097 | Msa0426610:intron | 40.0% | |
| CAATGCAAGATATCACCCTT+AGG | - | chr3_2:77046207-77046226 | Msa0426610:CDS | 40.0% | |
| TTCTTCTTCAAAGTGGGTGA+TGG | - | chr3_2:77045201-77045220 | Msa0426610:three_prime_UTR | 40.0% | |
| !! | TCAAAGTGGGTGATGGAAAA+TGG | - | chr3_2:77045208-77045227 | Msa0426610:three_prime_UTR | 40.0% |
| TCATCAACAGCAAGAACATG+AGG | + | chr3_2:77045241-77045260 | None:intergenic | 40.0% | |
| CTTTGCAAGAGGAATTCTTG+AGG | + | chr3_2:77045297-77045316 | None:intergenic | 40.0% | |
| CTCAAGAATTCCTCTTGCAA+AGG | - | chr3_2:77045295-77045314 | Msa0426610:CDS | 40.0% | |
| ACAGTGACAACTGCTGAAAA+TGG | - | chr3_2:77045507-77045526 | Msa0426610:CDS | 40.0% | |
| CAGTGACAACTGCTGAAAAT+GGG | - | chr3_2:77045508-77045527 | Msa0426610:CDS | 40.0% | |
| !! | CTGAAGGCATTGGAGTATTT+GGG | - | chr3_2:77045531-77045550 | Msa0426610:CDS | 40.0% |
| AAGTGGTGAACAGAACACTT+TGG | - | chr3_2:77045560-77045579 | Msa0426610:intron | 40.0% | |
| ! | GAACAGAACACTTTGGAGAA+TGG | - | chr3_2:77045567-77045586 | Msa0426610:intron | 40.0% |
| TAACACTAACCACCCCAAAT+TGG | - | chr3_2:77045885-77045904 | Msa0426610:intron | 40.0% | |
| TCAGCAATCATCTGTGATGA+AGG | - | chr3_2:77045917-77045936 | Msa0426610:CDS | 40.0% | |
| TCAGATGACATGATCACAAC+AGG | + | chr3_2:77045948-77045967 | None:intergenic | 40.0% | |
| CAGCACAACAATGATTGAGT+AGG | + | chr3_2:77046056-77046075 | None:intergenic | 40.0% | |
| CATTGTTGTGCTGAAAAAGC+AGG | - | chr3_2:77046063-77046082 | Msa0426610:intron | 40.0% | |
| AAAAGCAGGTGTATGGAAGA+AGG | - | chr3_2:77046077-77046096 | Msa0426610:intron | 40.0% | |
| AAAGCAGGTGTATGGAAGAA+GGG | - | chr3_2:77046078-77046097 | Msa0426610:intron | 40.0% | |
| CAATGCAAGATATCACCCTT+AGG | - | chr3_2:77046207-77046226 | Msa0426610:CDS | 40.0% | |
| !! | AACTGCTGAAAATGGGCTGA+AGG | - | chr3_2:77045515-77045534 | Msa0426610:CDS | 45.0% |
| !! | TGAAAATGGGCTGAAGGCAT+TGG | - | chr3_2:77045521-77045540 | Msa0426610:CDS | 45.0% |
| !! | GCTGAAGGCATTGGAGTATT+TGG | - | chr3_2:77045530-77045549 | Msa0426610:CDS | 45.0% |
| GAGTATTTGGGCTTGTCAAG+TGG | - | chr3_2:77045543-77045562 | Msa0426610:CDS | 45.0% | |
| GTAGGGACCCAAAGTGAATT+TGG | - | chr3_2:77045727-77045746 | Msa0426610:CDS | 45.0% | |
| GCAATCATCTGTGATGAAGG+AGG | - | chr3_2:77045920-77045939 | Msa0426610:CDS | 45.0% | |
| GTGCTGAAAAAGCAGGTGTA+TGG | - | chr3_2:77046070-77046089 | Msa0426610:intron | 45.0% | |
| AAGCAGGTGTATGGAAGAAG+GGG | - | chr3_2:77046079-77046098 | Msa0426610:intron | 45.0% | |
| ACAGGCCAGCTGATGAATTT+GGG | - | chr3_2:77046152-77046171 | Msa0426610:intron | 45.0% | |
| ACCTTCCCAAATTCATCAGC+TGG | + | chr3_2:77046160-77046179 | None:intergenic | 45.0% | |
| !! | AACTGCTGAAAATGGGCTGA+AGG | - | chr3_2:77045515-77045534 | Msa0426610:CDS | 45.0% |
| !! | TGAAAATGGGCTGAAGGCAT+TGG | - | chr3_2:77045521-77045540 | Msa0426610:CDS | 45.0% |
| !! | GCTGAAGGCATTGGAGTATT+TGG | - | chr3_2:77045530-77045549 | Msa0426610:CDS | 45.0% |
| GAGTATTTGGGCTTGTCAAG+TGG | - | chr3_2:77045543-77045562 | Msa0426610:CDS | 45.0% | |
| GTAGGGACCCAAAGTGAATT+TGG | - | chr3_2:77045727-77045746 | Msa0426610:CDS | 45.0% | |
| GCAATCATCTGTGATGAAGG+AGG | - | chr3_2:77045920-77045939 | Msa0426610:CDS | 45.0% | |
| GTGCTGAAAAAGCAGGTGTA+TGG | - | chr3_2:77046070-77046089 | Msa0426610:intron | 45.0% | |
| AAGCAGGTGTATGGAAGAAG+GGG | - | chr3_2:77046079-77046098 | Msa0426610:intron | 45.0% | |
| ACAGGCCAGCTGATGAATTT+GGG | - | chr3_2:77046152-77046171 | Msa0426610:intron | 45.0% | |
| ACCTTCCCAAATTCATCAGC+TGG | + | chr3_2:77046160-77046179 | None:intergenic | 45.0% | |
| GGTGTACGTACCTTTGCAAG+AGG | + | chr3_2:77045308-77045327 | None:intergenic | 50.0% | |
| ATCACAGACTACTGCATGCC+AGG | - | chr3_2:77045752-77045771 | Msa0426610:intron | 50.0% | |
| TCACAGACTACTGCATGCCA+GGG | - | chr3_2:77045753-77045772 | Msa0426610:intron | 50.0% | |
| AACTCATAGCCAGTCATCCC+TGG | + | chr3_2:77045773-77045792 | None:intergenic | 50.0% | |
| GACAGGCCAGCTGATGAATT+TGG | - | chr3_2:77046151-77046170 | Msa0426610:intron | 50.0% | |
| GCCAGCTGATGAATTTGGGA+AGG | - | chr3_2:77046156-77046175 | Msa0426610:intron | 50.0% | |
| GGTGTACGTACCTTTGCAAG+AGG | + | chr3_2:77045308-77045327 | None:intergenic | 50.0% | |
| ATCACAGACTACTGCATGCC+AGG | - | chr3_2:77045752-77045771 | Msa0426610:intron | 50.0% | |
| TCACAGACTACTGCATGCCA+GGG | - | chr3_2:77045753-77045772 | Msa0426610:intron | 50.0% | |
| AACTCATAGCCAGTCATCCC+TGG | + | chr3_2:77045773-77045792 | None:intergenic | 50.0% | |
| GACAGGCCAGCTGATGAATT+TGG | - | chr3_2:77046151-77046170 | Msa0426610:intron | 50.0% | |
| GCCAGCTGATGAATTTGGGA+AGG | - | chr3_2:77046156-77046175 | Msa0426610:intron | 50.0% | |
| TACTGCATGCCAGGGATGAC+TGG | - | chr3_2:77045761-77045780 | Msa0426610:intron | 55.0% | |
| TACTGCATGCCAGGGATGAC+TGG | - | chr3_2:77045761-77045780 | Msa0426610:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 77045187 | 77046297 | 77045187 | ID=Msa0426610;Name=Msa0426610 |
| chr3_2 | mRNA | 77045187 | 77046297 | 77045187 | ID=Msa0426610-mRNA-1;Parent=Msa0426610;Name=Msa0426610-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|1|0.8|1|1|1|5|104|155 |
| chr3_2 | exon | 77045187 | 77045399 | 77045187 | ID=Msa0426610-mRNA-1:exon:20052;Parent=Msa0426610-mRNA-1 |
| chr3_2 | exon | 77045493 | 77045563 | 77045493 | ID=Msa0426610-mRNA-1:exon:20051;Parent=Msa0426610-mRNA-1 |
| chr3_2 | exon | 77045676 | 77045753 | 77045676 | ID=Msa0426610-mRNA-1:exon:20050;Parent=Msa0426610-mRNA-1 |
| chr3_2 | exon | 77045894 | 77045973 | 77045894 | ID=Msa0426610-mRNA-1:exon:20049;Parent=Msa0426610-mRNA-1 |
| chr3_2 | exon | 77046168 | 77046297 | 77046168 | ID=Msa0426610-mRNA-1:exon:20048;Parent=Msa0426610-mRNA-1 |
| chr3_2 | CDS | 77046168 | 77046297 | 77046168 | ID=Msa0426610-mRNA-1:cds;Parent=Msa0426610-mRNA-1 |
| chr3_2 | CDS | 77045894 | 77045973 | 77045894 | ID=Msa0426610-mRNA-1:cds;Parent=Msa0426610-mRNA-1 |
| chr3_2 | CDS | 77045676 | 77045753 | 77045676 | ID=Msa0426610-mRNA-1:cds;Parent=Msa0426610-mRNA-1 |
| chr3_2 | CDS | 77045493 | 77045563 | 77045493 | ID=Msa0426610-mRNA-1:cds;Parent=Msa0426610-mRNA-1 |
| chr3_2 | CDS | 77045291 | 77045399 | 77045291 | ID=Msa0426610-mRNA-1:cds;Parent=Msa0426610-mRNA-1 |
| chr3_2 | three_prime_UTR | 77045187 | 77045290 | 77045187 | ID=Msa0426610-mRNA-1:three_prime_utr;Parent=Msa0426610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
