Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517390 | XP_013461496.1 | 92.357 | 157 | 9 | 2 | 1 | 155 | 1 | 156 | 2.35e-99 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517390 | sp|Q9FPR6|ARR17_ARATH | 72.308 | 130 | 36 | 0 | 19 | 148 | 21 | 150 | 2.39e-63 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517390 | A0A072V1G2 | 92.357 | 157 | 9 | 2 | 1 | 155 | 1 | 156 | 1.12e-99 | 292 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0517390 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036430 | Msa0517390 | 0.804085 | 2.558363e-49 | -8.615850e-47 |
| Msa0098440 | Msa0517390 | 0.826295 | 2.933353e-54 | -8.615850e-47 |
| Msa0219190 | Msa0517390 | 0.824071 | 9.845129e-54 | -8.615850e-47 |
| Msa0426610 | Msa0517390 | 0.905673 | 3.348300e-80 | -8.615850e-47 |
| Msa0472900 | Msa0517390 | 0.920565 | 1.088707e-87 | -8.615850e-47 |
| Msa0298240 | Msa0517390 | 0.831018 | 2.117652e-55 | -8.615850e-47 |
| Msa0517390 | Msa0537920 | 0.807290 | 5.434037e-50 | -8.615850e-47 |
| Msa0517390 | Msa0663680 | 0.803048 | 4.197768e-49 | -8.615850e-47 |
| Msa0517390 | Msa0707220 | 0.804299 | 2.308590e-49 | -8.615850e-47 |
| Msa0517390 | Msa0761580 | 0.801283 | 9.686104e-49 | -8.615850e-47 |
| Msa0517390 | Msa0764820 | 0.810576 | 1.076348e-50 | -8.615850e-47 |
| Msa0517390 | Msa0849280 | 0.805251 | 1.460665e-49 | -8.615850e-47 |
| Msa0517390 | Msa0851020 | 0.802995 | 4.304439e-49 | -8.615850e-47 |
| Msa0517390 | Msa0867350 | 0.820612 | 6.255016e-53 | -8.615850e-47 |
| Msa0517390 | Msa0872310 | 0.824128 | 9.545066e-54 | -8.615850e-47 |
| Msa0517390 | Msa0898730 | 0.811729 | 6.050549e-51 | -8.615850e-47 |
| Msa0517390 | Msa0905550 | 0.811189 | 7.929280e-51 | -8.615850e-47 |
| Msa0517390 | Msa1032450 | 0.839012 | 2.043869e-57 | -8.615850e-47 |
| Msa0517390 | Msa1037900 | 0.830063 | 3.627000e-55 | -8.615850e-47 |
| Msa0517390 | Msa1037910 | 0.809871 | 1.527334e-50 | -8.615850e-47 |
| Msa0517390 | Msa1041530 | 0.838494 | 2.782091e-57 | -8.615850e-47 |
| Msa0517390 | Msa1042670 | 0.823770 | 1.158402e-53 | -8.615850e-47 |
| Msa0517390 | Msa1081570 | 0.844127 | 9.165013e-59 | -8.615850e-47 |
| Msa0517390 | Msa1123880 | 0.815622 | 8.411620e-52 | -8.615850e-47 |
| Msa0517390 | Msa1127140 | 0.856318 | 3.488693e-62 | -8.615850e-47 |
| Msa0517390 | Msa1129960 | 0.831441 | 1.666444e-55 | -8.615850e-47 |
| Msa0517390 | Msa1129970 | 0.801969 | 7.006068e-49 | -8.615850e-47 |
| Msa0517390 | Msa1166400 | 0.863005 | 3.388573e-64 | -8.615850e-47 |
| Msa0517390 | Msa1169990 | 0.817818 | 2.706764e-52 | -8.615850e-47 |
| Msa0517390 | Msa1201160 | 0.805504 | 1.293087e-49 | -8.615850e-47 |
| Msa0517390 | Msa1305510 | 0.803869 | 2.836916e-49 | -8.615850e-47 |
| Msa0517390 | Msa1420060 | 0.839786 | 1.286373e-57 | -8.615850e-47 |
| Msa0517390 | Msa1421550 | 0.803069 | 4.156389e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517390 | MtrunA17_Chr3g0128691 | 92.357 | 157 | 9 | 2 | 1 | 155 | 1 | 156 | 2.16e-103 | 292 |
| Msa0517390 | MtrunA17_Chr3g0118211 | 60.769 | 130 | 50 | 1 | 19 | 148 | 24 | 152 | 7.71e-55 | 171 |
| Msa0517390 | MtrunA17_Chr1g0170741 | 59.259 | 135 | 53 | 1 | 14 | 146 | 4 | 138 | 2.77e-53 | 167 |
| Msa0517390 | MtrunA17_Chr4g0059571 | 60.000 | 130 | 51 | 1 | 19 | 148 | 27 | 155 | 6.94e-53 | 166 |
| Msa0517390 | MtrunA17_Chr5g0414931 | 60.606 | 132 | 47 | 2 | 19 | 146 | 17 | 147 | 3.92e-52 | 165 |
| Msa0517390 | MtrunA17_Chr3g0082861 | 55.714 | 140 | 48 | 2 | 19 | 147 | 5 | 141 | 5.80e-52 | 162 |
| Msa0517390 | MtrunA17_Chr8g0352871 | 57.353 | 136 | 51 | 1 | 19 | 147 | 10 | 145 | 8.72e-52 | 162 |
| Msa0517390 | MtrunA17_Chr7g0256551 | 59.091 | 132 | 46 | 2 | 19 | 142 | 10 | 141 | 1.20e-50 | 162 |
| Msa0517390 | MtrunA17_Chr3g0124861 | 53.191 | 141 | 48 | 2 | 19 | 142 | 23 | 162 | 5.48e-46 | 150 |
| Msa0517390 | MtrunA17_Chr4g0021731 | 60.256 | 78 | 30 | 1 | 19 | 96 | 12 | 88 | 1.40e-27 | 98.6 |
| Msa0517390 | MtrunA17_Chr4g0030271 | 34.959 | 123 | 70 | 1 | 20 | 142 | 91 | 203 | 6.71e-16 | 73.9 |
| Msa0517390 | MtrunA17_Chr1g0181811 | 34.959 | 123 | 70 | 1 | 20 | 142 | 87 | 199 | 6.10e-15 | 70.9 |
| Msa0517390 | MtrunA17_Chr3g0127941 | 30.645 | 124 | 74 | 2 | 20 | 142 | 58 | 170 | 5.80e-14 | 68.2 |
| Msa0517390 | MtrunA17_Chr8g0345901 | 30.894 | 123 | 75 | 1 | 20 | 142 | 38 | 150 | 2.45e-13 | 66.2 |
| Msa0517390 | MtrunA17_Chr7g0276361 | 30.894 | 123 | 75 | 1 | 20 | 142 | 16 | 128 | 3.92e-13 | 65.9 |
| Msa0517390 | MtrunA17_Chr8g0376881 | 28.906 | 128 | 78 | 2 | 20 | 147 | 31 | 145 | 7.76e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517390 | AT3G56380.1 | 72.308 | 130 | 36 | 0 | 19 | 148 | 21 | 150 | 2.43e-64 | 194 |
| Msa0517390 | AT3G56380.2 | 72.519 | 131 | 35 | 1 | 19 | 148 | 21 | 151 | 4.88e-63 | 191 |
| Msa0517390 | AT2G40670.1 | 70.896 | 134 | 33 | 2 | 19 | 148 | 30 | 161 | 7.35e-63 | 191 |
| Msa0517390 | AT2G40670.2 | 71.111 | 135 | 32 | 3 | 19 | 148 | 30 | 162 | 1.51e-61 | 187 |
| Msa0517390 | AT1G10470.3 | 61.719 | 128 | 48 | 1 | 19 | 146 | 21 | 147 | 3.43e-53 | 169 |
| Msa0517390 | AT1G59940.1 | 58.647 | 133 | 54 | 1 | 14 | 146 | 29 | 160 | 5.00e-53 | 168 |
| Msa0517390 | AT1G10470.1 | 61.719 | 128 | 48 | 1 | 19 | 146 | 35 | 161 | 6.37e-53 | 168 |
| Msa0517390 | AT1G59940.2 | 58.647 | 133 | 54 | 1 | 14 | 146 | 121 | 252 | 7.45e-52 | 167 |
| Msa0517390 | AT3G48100.1 | 57.364 | 129 | 55 | 0 | 19 | 147 | 26 | 154 | 1.34e-51 | 162 |
| Msa0517390 | AT5G62920.1 | 58.955 | 134 | 54 | 1 | 19 | 152 | 26 | 158 | 3.22e-51 | 162 |
| Msa0517390 | AT3G57040.2 | 53.623 | 138 | 55 | 1 | 19 | 147 | 10 | 147 | 6.46e-51 | 162 |
| Msa0517390 | AT3G57040.1 | 53.623 | 138 | 55 | 1 | 19 | 147 | 10 | 147 | 6.46e-51 | 162 |
| Msa0517390 | AT2G41310.1 | 51.724 | 145 | 63 | 2 | 10 | 147 | 1 | 145 | 2.33e-50 | 161 |
| Msa0517390 | AT1G74890.1 | 59.091 | 132 | 53 | 1 | 19 | 150 | 19 | 149 | 5.99e-50 | 159 |
| Msa0517390 | AT1G19050.1 | 58.015 | 131 | 52 | 2 | 19 | 148 | 25 | 153 | 3.46e-49 | 157 |
| Msa0517390 | AT1G10470.2 | 50.000 | 74 | 33 | 3 | 75 | 146 | 14 | 85 | 3.19e-15 | 69.7 |
| Msa0517390 | AT5G24470.1 | 31.452 | 124 | 73 | 2 | 20 | 142 | 52 | 164 | 7.07e-14 | 68.2 |
| Msa0517390 | AT5G02810.1 | 31.707 | 123 | 74 | 1 | 20 | 142 | 80 | 192 | 2.13e-12 | 64.3 |
| Msa0517390 | AT5G60100.7 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 2.30e-12 | 63.9 |
| Msa0517390 | AT5G60100.6 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 2.30e-12 | 63.9 |
| Msa0517390 | AT5G60100.4 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 2.30e-12 | 63.9 |
| Msa0517390 | AT5G60100.2 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 2.32e-12 | 63.9 |
| Msa0517390 | AT5G60100.5 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 5.29e-12 | 62.8 |
| Msa0517390 | AT5G60100.3 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 5.29e-12 | 62.8 |
| Msa0517390 | AT5G60100.1 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 5.29e-12 | 62.8 |
| Msa0517390 | AT2G46790.3 | 28.226 | 124 | 79 | 1 | 19 | 142 | 38 | 151 | 1.90e-11 | 61.2 |
| Msa0517390 | AT2G46790.1 | 28.226 | 124 | 79 | 1 | 19 | 142 | 38 | 151 | 2.29e-11 | 61.2 |
| Msa0517390 | AT5G07210.2 | 30.081 | 123 | 72 | 3 | 20 | 142 | 18 | 126 | 3.30e-11 | 60.8 |
Find 46 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGAAGGCATTGGAGTATT+TGG | 0.158019 | 3_4:+68987998 | Msa0517390:CDS |
| GACAGGCCAGCTGATGAATT+TGG | 0.201243 | 3_4:+68988620 | Msa0517390:CDS |
| ACAGTGACAACTGCTGAAAA+TGG | 0.248549 | 3_4:+68987975 | Msa0517390:intron |
| CTGAAGGCATTGGAGTATTT+GGG | 0.249714 | 3_4:+68987999 | Msa0517390:CDS |
| CTCCTAAGCATATCTTATTA+AGG | 0.327784 | 3_4:-68988699 | None:intergenic |
| GTAGGGACCCAAAGTGAATT+TGG | 0.331645 | 3_4:+68988195 | Msa0517390:intron |
| AATTACTTGTTGATCCTTGT+TGG | 0.359191 | 3_4:-68988443 | None:intergenic |
| TCAAAGTGGGTGATGGAAAA+TGG | 0.361841 | 3_4:+68987676 | Msa0517390:CDS |
| AGGATGTTGTACTCTAGTTT+AGG | 0.370041 | 3_4:+68988769 | Msa0517390:three_prime_UTR |
| TGAGTTGCTTAAGAAAATTA+AGG | 0.374516 | 3_4:+68988255 | Msa0517390:CDS |
| ACAGGCCAGCTGATGAATTT+GGG | 0.393986 | 3_4:+68988621 | Msa0517390:CDS |
| TACTGCATGCCAGGGATGAC+TGG | 0.411671 | 3_4:+68988229 | Msa0517390:CDS |
| GTGATGACCAAATTCACTTT+GGG | 0.424646 | 3_4:-68988202 | None:intergenic |
| ATCACAGACTACTGCATGCC+AGG | 0.428078 | 3_4:+68988220 | Msa0517390:CDS |
| TTCTTCTTCAAAGTGGGTGA+TGG | 0.456607 | 3_4:+68987669 | Msa0517390:CDS |
| CTGATTCTTCTTCTTCAAAG+TGG | 0.467692 | 3_4:+68987662 | Msa0517390:CDS |
| TGATTCTTCTTCTTCAAAGT+GGG | 0.471982 | 3_4:+68987663 | Msa0517390:CDS |
| ACCTTCCCAAATTCATCAGC+TGG | 0.476038 | 3_4:-68988626 | None:intergenic |
| TCAGATGACATGATCACAAC+AGG | 0.480037 | 3_4:-68988413 | None:intergenic |
| TCAGCAATCATCTGTGATGA+AGG | 0.481432 | 3_4:+68988385 | Msa0517390:intron |
| TGTGATGACCAAATTCACTT+TGG | 0.486577 | 3_4:-68988203 | None:intergenic |
| GAACAGAACACTTTGGAGAA+TGG | 0.490659 | 3_4:+68988035 | Msa0517390:CDS |
| GCATATCTTATTAAGGCCTA+AGG | 0.498738 | 3_4:-68988692 | None:intergenic |
| GGCCTTAATAAGATATGCTT+AGG | 0.499229 | 3_4:+68988721 | Msa0517390:intron |
| CAGTGACAACTGCTGAAAAT+GGG | 0.502968 | 3_4:+68987976 | Msa0517390:intron |
| TTTACATCAGATTGTTTGAG+AGG | 0.513388 | 3_4:-68988591 | None:intergenic |
| TGAAAATGGGCTGAAGGCAT+TGG | 0.515465 | 3_4:+68987989 | Msa0517390:CDS |
| AACTCATAGCCAGTCATCCC+TGG | 0.516855 | 3_4:-68988238 | None:intergenic |
| AAAAGCAGGTGTATGGAAGA+AGG | 0.535716 | 3_4:+68988546 | Msa0517390:intron |
| AAAGCAGGTGTATGGAAGAA+GGG | 0.542181 | 3_4:+68988547 | Msa0517390:intron |
| CATATCTTATTAAGGCCTAA+GGG | 0.549802 | 3_4:-68988691 | None:intergenic |
| AACTGCTGAAAATGGGCTGA+AGG | 0.568007 | 3_4:+68987983 | Msa0517390:CDS |
| CAATGCAAGATATCACCCTT+AGG | 0.568702 | 3_4:+68988676 | Msa0517390:three_prime_UTR |
| AATAAGATATGCTTAGGAGT+AGG | 0.581556 | 3_4:+68988727 | Msa0517390:intron |
| CTCAAGAATTCCTCTTGCAA+AGG | 0.589496 | 3_4:+68987763 | Msa0517390:CDS |
| GCCAGCTGATGAATTTGGGA+AGG | 0.598518 | 3_4:+68988625 | Msa0517390:CDS |
| AAGCAGGTGTATGGAAGAAG+GGG | 0.612241 | 3_4:+68988548 | Msa0517390:intron |
| TCACAGACTACTGCATGCCA+GGG | 0.612620 | 3_4:+68988221 | Msa0517390:CDS |
| CTTTGCAAGAGGAATTCTTG+AGG | 0.621330 | 3_4:-68987762 | None:intergenic |
| TCTGATGTAAAACAACTGAC+AGG | 0.621647 | 3_4:+68988603 | Msa0517390:CDS |
| TCATCAACAGCAAGAACATG+AGG | 0.625979 | 3_4:-68987706 | None:intergenic |
| AAGTGGTGAACAGAACACTT+TGG | 0.626039 | 3_4:+68988028 | Msa0517390:CDS |
| GAGTATTTGGGCTTGTCAAG+TGG | 0.627865 | 3_4:+68988011 | Msa0517390:CDS |
| GGTGTACGTACCTTTGCAAG+AGG | 0.636893 | 3_4:-68987773 | None:intergenic |
| GCAATCATCTGTGATGAAGG+AGG | 0.667691 | 3_4:+68988388 | Msa0517390:intron |
| CATCTGAGAATATACCAACA+AGG | 0.683899 | 3_4:+68988429 | Msa0517390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGAATATAACAGAAAA+TGG | - | chr3_4:68987813-68987832 | None:intergenic | 15.0% |
| !! | GAAAAAGATACAAAAAAAAA+AGG | - | chr3_4:68988492-68988511 | None:intergenic | 15.0% |
| !! | AAAAAGAATATAACAGAAAA+TGG | - | chr3_4:68987813-68987832 | None:intergenic | 15.0% |
| !! | GAAAAAGATACAAAAAAAAA+AGG | - | chr3_4:68988492-68988511 | None:intergenic | 15.0% |
| !!! | TGATGTTTGATGTTTTTTTT+TGG | + | chr3_4:68987900-68987919 | Msa0517390:intron | 20.0% |
| !!! | TTTTTTTTTGGTCCATATTT+TGG | + | chr3_4:68987912-68987931 | Msa0517390:intron | 20.0% |
| !! | TGAAAATAATATCCAATTTG+GGG | - | chr3_4:68988368-68988387 | None:intergenic | 20.0% |
| !! | CTGAAAATAATATCCAATTT+GGG | - | chr3_4:68988369-68988388 | None:intergenic | 20.0% |
| !!! | TGATGTTTGATGTTTTTTTT+TGG | + | chr3_4:68987900-68987919 | Msa0517390:intron | 20.0% |
| !!! | TTTTTTTTTGGTCCATATTT+TGG | + | chr3_4:68987912-68987931 | Msa0517390:intron | 20.0% |
| !! | TGAAAATAATATCCAATTTG+GGG | - | chr3_4:68988368-68988387 | None:intergenic | 20.0% |
| !! | CTGAAAATAATATCCAATTT+GGG | - | chr3_4:68988369-68988388 | None:intergenic | 20.0% |
| !!! | GTGTTTTGTTAGTAACATTT+TGG | - | chr3_4:68988093-68988112 | None:intergenic | 25.0% |
| ! | TGAGTTGCTTAAGAAAATTA+AGG | + | chr3_4:68988255-68988274 | Msa0517390:CDS | 25.0% |
| ! | GCTGAAAATAATATCCAATT+TGG | - | chr3_4:68988370-68988389 | None:intergenic | 25.0% |
| !!! | GTGTTTTGTTAGTAACATTT+TGG | - | chr3_4:68988093-68988112 | None:intergenic | 25.0% |
| ! | TGAGTTGCTTAAGAAAATTA+AGG | + | chr3_4:68988255-68988274 | Msa0517390:CDS | 25.0% |
| ! | GCTGAAAATAATATCCAATT+TGG | - | chr3_4:68988370-68988389 | None:intergenic | 25.0% |
| TGATTCTTCTTCTTCAAAGT+GGG | + | chr3_4:68987663-68987682 | Msa0517390:CDS | 30.0% | |
| CAAACAGAATCACCAAAATA+TGG | - | chr3_4:68987927-68987946 | None:intergenic | 30.0% | |
| GTGATTCTGTTTGATTGAAT+GGG | + | chr3_4:68987934-68987953 | Msa0517390:intron | 30.0% | |
| !!! | TGACTATTTCTGGTTTTTGT+AGG | + | chr3_4:68988177-68988196 | Msa0517390:intron | 30.0% |
| !!! | GACTATTTCTGGTTTTTGTA+GGG | + | chr3_4:68988178-68988197 | Msa0517390:intron | 30.0% |
| AAATAATATCCAATTTGGGG+TGG | - | chr3_4:68988365-68988384 | None:intergenic | 30.0% | |
| ! | AATTACTTGTTGATCCTTGT+TGG | - | chr3_4:68988446-68988465 | None:intergenic | 30.0% |
| TTTACATCAGATTGTTTGAG+AGG | - | chr3_4:68988594-68988613 | None:intergenic | 30.0% | |
| CATATCTTATTAAGGCCTAA+GGG | - | chr3_4:68988694-68988713 | None:intergenic | 30.0% | |
| CTCCTAAGCATATCTTATTA+AGG | - | chr3_4:68988702-68988721 | None:intergenic | 30.0% | |
| CTTAATAAGATATGCTTAGG+AGG | + | chr3_4:68988700-68988719 | Msa0517390:intron | 30.0% | |
| CTCCTAAGCATATCTTATTA+AGG | - | chr3_4:68988702-68988721 | None:intergenic | 30.0% | |
| AATAAGATATGCTTAGGAGT+AGG | + | chr3_4:68988727-68988746 | Msa0517390:intron | 30.0% | |
| !! | GAATGCATATCATTGTTTTG+AGG | + | chr3_4:68988749-68988768 | Msa0517390:three_prime_UTR | 30.0% |
| TGATTCTTCTTCTTCAAAGT+GGG | + | chr3_4:68987663-68987682 | Msa0517390:CDS | 30.0% | |
| CAAACAGAATCACCAAAATA+TGG | - | chr3_4:68987927-68987946 | None:intergenic | 30.0% | |
| GTGATTCTGTTTGATTGAAT+GGG | + | chr3_4:68987934-68987953 | Msa0517390:intron | 30.0% | |
| !!! | TGACTATTTCTGGTTTTTGT+AGG | + | chr3_4:68988177-68988196 | Msa0517390:intron | 30.0% |
| !!! | GACTATTTCTGGTTTTTGTA+GGG | + | chr3_4:68988178-68988197 | Msa0517390:intron | 30.0% |
| AAATAATATCCAATTTGGGG+TGG | - | chr3_4:68988365-68988384 | None:intergenic | 30.0% | |
| ! | AATTACTTGTTGATCCTTGT+TGG | - | chr3_4:68988446-68988465 | None:intergenic | 30.0% |
| TTTACATCAGATTGTTTGAG+AGG | - | chr3_4:68988594-68988613 | None:intergenic | 30.0% | |
| CATATCTTATTAAGGCCTAA+GGG | - | chr3_4:68988694-68988713 | None:intergenic | 30.0% | |
| CTCCTAAGCATATCTTATTA+AGG | - | chr3_4:68988702-68988721 | None:intergenic | 30.0% | |
| CTTAATAAGATATGCTTAGG+AGG | + | chr3_4:68988700-68988719 | Msa0517390:intron | 30.0% | |
| CTCCTAAGCATATCTTATTA+AGG | - | chr3_4:68988702-68988721 | None:intergenic | 30.0% | |
| AATAAGATATGCTTAGGAGT+AGG | + | chr3_4:68988727-68988746 | Msa0517390:intron | 30.0% | |
| !! | GAATGCATATCATTGTTTTG+AGG | + | chr3_4:68988749-68988768 | Msa0517390:three_prime_UTR | 30.0% |
| CTGATTCTTCTTCTTCAAAG+TGG | + | chr3_4:68987662-68987681 | Msa0517390:CDS | 35.0% | |
| AAAATGGTTGAGTGAGAGAT+AGG | - | chr3_4:68987797-68987816 | None:intergenic | 35.0% | |
| GGTGATTCTGTTTGATTGAA+TGG | + | chr3_4:68987933-68987952 | Msa0517390:intron | 35.0% | |
| !! | TGATTGAATGGGCTTTTTGT+TGG | + | chr3_4:68987945-68987964 | Msa0517390:intron | 35.0% |
| TGCTAACAACTGACTATTTC+TGG | + | chr3_4:68988167-68988186 | Msa0517390:intron | 35.0% | |
| GTGATGACCAAATTCACTTT+GGG | - | chr3_4:68988205-68988224 | None:intergenic | 35.0% | |
| TGTGATGACCAAATTCACTT+TGG | - | chr3_4:68988206-68988225 | None:intergenic | 35.0% | |
| CATCTGAGAATATACCAACA+AGG | + | chr3_4:68988429-68988448 | Msa0517390:CDS | 35.0% | |
| TCTGATGTAAAACAACTGAC+AGG | + | chr3_4:68988603-68988622 | Msa0517390:CDS | 35.0% | |
| GCATATCTTATTAAGGCCTA+AGG | - | chr3_4:68988695-68988714 | None:intergenic | 35.0% | |
| GGCCTTAATAAGATATGCTT+AGG | + | chr3_4:68988697-68988716 | Msa0517390:intron | 35.0% | |
| GGCCTTAATAAGATATGCTT+AGG | + | chr3_4:68988697-68988716 | Msa0517390:intron | 35.0% | |
| CTGATTCTTCTTCTTCAAAG+TGG | + | chr3_4:68987662-68987681 | Msa0517390:CDS | 35.0% | |
| AAAATGGTTGAGTGAGAGAT+AGG | - | chr3_4:68987797-68987816 | None:intergenic | 35.0% | |
| GGTGATTCTGTTTGATTGAA+TGG | + | chr3_4:68987933-68987952 | Msa0517390:intron | 35.0% | |
| !! | TGATTGAATGGGCTTTTTGT+TGG | + | chr3_4:68987945-68987964 | Msa0517390:intron | 35.0% |
| TGCTAACAACTGACTATTTC+TGG | + | chr3_4:68988167-68988186 | Msa0517390:intron | 35.0% | |
| GTGATGACCAAATTCACTTT+GGG | - | chr3_4:68988205-68988224 | None:intergenic | 35.0% | |
| TGTGATGACCAAATTCACTT+TGG | - | chr3_4:68988206-68988225 | None:intergenic | 35.0% | |
| CATCTGAGAATATACCAACA+AGG | + | chr3_4:68988429-68988448 | Msa0517390:CDS | 35.0% | |
| TCTGATGTAAAACAACTGAC+AGG | + | chr3_4:68988603-68988622 | Msa0517390:CDS | 35.0% | |
| GCATATCTTATTAAGGCCTA+AGG | - | chr3_4:68988695-68988714 | None:intergenic | 35.0% | |
| GGCCTTAATAAGATATGCTT+AGG | + | chr3_4:68988697-68988716 | Msa0517390:intron | 35.0% | |
| GGCCTTAATAAGATATGCTT+AGG | + | chr3_4:68988697-68988716 | Msa0517390:intron | 35.0% | |
| TTCTTCTTCAAAGTGGGTGA+TGG | + | chr3_4:68987669-68987688 | Msa0517390:CDS | 40.0% | |
| !! | TCAAAGTGGGTGATGGAAAA+TGG | + | chr3_4:68987676-68987695 | Msa0517390:CDS | 40.0% |
| TCATCAACAGCAAGAACATG+AGG | - | chr3_4:68987709-68987728 | None:intergenic | 40.0% | |
| CTTTGCAAGAGGAATTCTTG+AGG | - | chr3_4:68987765-68987784 | None:intergenic | 40.0% | |
| CTCAAGAATTCCTCTTGCAA+AGG | + | chr3_4:68987763-68987782 | Msa0517390:CDS | 40.0% | |
| ACAGTGACAACTGCTGAAAA+TGG | + | chr3_4:68987975-68987994 | Msa0517390:intron | 40.0% | |
| CAGTGACAACTGCTGAAAAT+GGG | + | chr3_4:68987976-68987995 | Msa0517390:intron | 40.0% | |
| !! | CTGAAGGCATTGGAGTATTT+GGG | + | chr3_4:68987999-68988018 | Msa0517390:CDS | 40.0% |
| AAGTGGTGAACAGAACACTT+TGG | + | chr3_4:68988028-68988047 | Msa0517390:CDS | 40.0% | |
| ! | GAACAGAACACTTTGGAGAA+TGG | + | chr3_4:68988035-68988054 | Msa0517390:CDS | 40.0% |
| TAACACTAACCACCCCAAAT+TGG | + | chr3_4:68988353-68988372 | Msa0517390:intron | 40.0% | |
| TCAGCAATCATCTGTGATGA+AGG | + | chr3_4:68988385-68988404 | Msa0517390:intron | 40.0% | |
| TCAGATGACATGATCACAAC+AGG | - | chr3_4:68988416-68988435 | None:intergenic | 40.0% | |
| CAGCACAACAATGATTGAGT+AGG | - | chr3_4:68988525-68988544 | None:intergenic | 40.0% | |
| CATTGTTGTGCTGAAAAAGC+AGG | + | chr3_4:68988532-68988551 | Msa0517390:intron | 40.0% | |
| AAAAGCAGGTGTATGGAAGA+AGG | + | chr3_4:68988546-68988565 | Msa0517390:intron | 40.0% | |
| AAAGCAGGTGTATGGAAGAA+GGG | + | chr3_4:68988547-68988566 | Msa0517390:intron | 40.0% | |
| CAATGCAAGATATCACCCTT+AGG | + | chr3_4:68988676-68988695 | Msa0517390:three_prime_UTR | 40.0% | |
| TTCTTCTTCAAAGTGGGTGA+TGG | + | chr3_4:68987669-68987688 | Msa0517390:CDS | 40.0% | |
| !! | TCAAAGTGGGTGATGGAAAA+TGG | + | chr3_4:68987676-68987695 | Msa0517390:CDS | 40.0% |
| TCATCAACAGCAAGAACATG+AGG | - | chr3_4:68987709-68987728 | None:intergenic | 40.0% | |
| CTTTGCAAGAGGAATTCTTG+AGG | - | chr3_4:68987765-68987784 | None:intergenic | 40.0% | |
| CTCAAGAATTCCTCTTGCAA+AGG | + | chr3_4:68987763-68987782 | Msa0517390:CDS | 40.0% | |
| ACAGTGACAACTGCTGAAAA+TGG | + | chr3_4:68987975-68987994 | Msa0517390:intron | 40.0% | |
| CAGTGACAACTGCTGAAAAT+GGG | + | chr3_4:68987976-68987995 | Msa0517390:intron | 40.0% | |
| !! | CTGAAGGCATTGGAGTATTT+GGG | + | chr3_4:68987999-68988018 | Msa0517390:CDS | 40.0% |
| AAGTGGTGAACAGAACACTT+TGG | + | chr3_4:68988028-68988047 | Msa0517390:CDS | 40.0% | |
| ! | GAACAGAACACTTTGGAGAA+TGG | + | chr3_4:68988035-68988054 | Msa0517390:CDS | 40.0% |
| TAACACTAACCACCCCAAAT+TGG | + | chr3_4:68988353-68988372 | Msa0517390:intron | 40.0% | |
| TCAGCAATCATCTGTGATGA+AGG | + | chr3_4:68988385-68988404 | Msa0517390:intron | 40.0% | |
| TCAGATGACATGATCACAAC+AGG | - | chr3_4:68988416-68988435 | None:intergenic | 40.0% | |
| CAGCACAACAATGATTGAGT+AGG | - | chr3_4:68988525-68988544 | None:intergenic | 40.0% | |
| CATTGTTGTGCTGAAAAAGC+AGG | + | chr3_4:68988532-68988551 | Msa0517390:intron | 40.0% | |
| AAAAGCAGGTGTATGGAAGA+AGG | + | chr3_4:68988546-68988565 | Msa0517390:intron | 40.0% | |
| AAAGCAGGTGTATGGAAGAA+GGG | + | chr3_4:68988547-68988566 | Msa0517390:intron | 40.0% | |
| CAATGCAAGATATCACCCTT+AGG | + | chr3_4:68988676-68988695 | Msa0517390:three_prime_UTR | 40.0% | |
| !! | AACTGCTGAAAATGGGCTGA+AGG | + | chr3_4:68987983-68988002 | Msa0517390:CDS | 45.0% |
| !! | TGAAAATGGGCTGAAGGCAT+TGG | + | chr3_4:68987989-68988008 | Msa0517390:CDS | 45.0% |
| !! | GCTGAAGGCATTGGAGTATT+TGG | + | chr3_4:68987998-68988017 | Msa0517390:CDS | 45.0% |
| GAGTATTTGGGCTTGTCAAG+TGG | + | chr3_4:68988011-68988030 | Msa0517390:CDS | 45.0% | |
| GTAGGGACCCAAAGTGAATT+TGG | + | chr3_4:68988195-68988214 | Msa0517390:intron | 45.0% | |
| GCAATCATCTGTGATGAAGG+AGG | + | chr3_4:68988388-68988407 | Msa0517390:intron | 45.0% | |
| GTGCTGAAAAAGCAGGTGTA+TGG | + | chr3_4:68988539-68988558 | Msa0517390:intron | 45.0% | |
| AAGCAGGTGTATGGAAGAAG+GGG | + | chr3_4:68988548-68988567 | Msa0517390:intron | 45.0% | |
| ACAGGCCAGCTGATGAATTT+GGG | + | chr3_4:68988621-68988640 | Msa0517390:CDS | 45.0% | |
| ACCTTCCCAAATTCATCAGC+TGG | - | chr3_4:68988629-68988648 | None:intergenic | 45.0% | |
| !! | AACTGCTGAAAATGGGCTGA+AGG | + | chr3_4:68987983-68988002 | Msa0517390:CDS | 45.0% |
| !! | TGAAAATGGGCTGAAGGCAT+TGG | + | chr3_4:68987989-68988008 | Msa0517390:CDS | 45.0% |
| !! | GCTGAAGGCATTGGAGTATT+TGG | + | chr3_4:68987998-68988017 | Msa0517390:CDS | 45.0% |
| GAGTATTTGGGCTTGTCAAG+TGG | + | chr3_4:68988011-68988030 | Msa0517390:CDS | 45.0% | |
| GTAGGGACCCAAAGTGAATT+TGG | + | chr3_4:68988195-68988214 | Msa0517390:intron | 45.0% | |
| GCAATCATCTGTGATGAAGG+AGG | + | chr3_4:68988388-68988407 | Msa0517390:intron | 45.0% | |
| GTGCTGAAAAAGCAGGTGTA+TGG | + | chr3_4:68988539-68988558 | Msa0517390:intron | 45.0% | |
| AAGCAGGTGTATGGAAGAAG+GGG | + | chr3_4:68988548-68988567 | Msa0517390:intron | 45.0% | |
| ACAGGCCAGCTGATGAATTT+GGG | + | chr3_4:68988621-68988640 | Msa0517390:CDS | 45.0% | |
| ACCTTCCCAAATTCATCAGC+TGG | - | chr3_4:68988629-68988648 | None:intergenic | 45.0% | |
| GGTGTACGTACCTTTGCAAG+AGG | - | chr3_4:68987776-68987795 | None:intergenic | 50.0% | |
| ATCACAGACTACTGCATGCC+AGG | + | chr3_4:68988220-68988239 | Msa0517390:CDS | 50.0% | |
| TCACAGACTACTGCATGCCA+GGG | + | chr3_4:68988221-68988240 | Msa0517390:CDS | 50.0% | |
| AACTCATAGCCAGTCATCCC+TGG | - | chr3_4:68988241-68988260 | None:intergenic | 50.0% | |
| GACAGGCCAGCTGATGAATT+TGG | + | chr3_4:68988620-68988639 | Msa0517390:CDS | 50.0% | |
| GCCAGCTGATGAATTTGGGA+AGG | + | chr3_4:68988625-68988644 | Msa0517390:CDS | 50.0% | |
| GGTGTACGTACCTTTGCAAG+AGG | - | chr3_4:68987776-68987795 | None:intergenic | 50.0% | |
| ATCACAGACTACTGCATGCC+AGG | + | chr3_4:68988220-68988239 | Msa0517390:CDS | 50.0% | |
| TCACAGACTACTGCATGCCA+GGG | + | chr3_4:68988221-68988240 | Msa0517390:CDS | 50.0% | |
| AACTCATAGCCAGTCATCCC+TGG | - | chr3_4:68988241-68988260 | None:intergenic | 50.0% | |
| GACAGGCCAGCTGATGAATT+TGG | + | chr3_4:68988620-68988639 | Msa0517390:CDS | 50.0% | |
| GCCAGCTGATGAATTTGGGA+AGG | + | chr3_4:68988625-68988644 | Msa0517390:CDS | 50.0% | |
| TACTGCATGCCAGGGATGAC+TGG | + | chr3_4:68988229-68988248 | Msa0517390:CDS | 55.0% | |
| TACTGCATGCCAGGGATGAC+TGG | + | chr3_4:68988229-68988248 | Msa0517390:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 68987655 | 68988790 | 68987655 | ID=Msa0517390;Name=Msa0517390 |
| chr3_4 | mRNA | 68987655 | 68988790 | 68987655 | ID=Msa0517390-mRNA-1;Parent=Msa0517390;Name=Msa0517390-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|1|0.83|1|0.8|0.66|6|104|155 |
| chr3_4 | exon | 68987655 | 68987784 | 68987655 | ID=Msa0517390-mRNA-1:exon:18297;Parent=Msa0517390-mRNA-1 |
| chr3_4 | exon | 68987979 | 68988058 | 68987979 | ID=Msa0517390-mRNA-1:exon:18298;Parent=Msa0517390-mRNA-1 |
| chr3_4 | exon | 68988199 | 68988276 | 68988199 | ID=Msa0517390-mRNA-1:exon:18299;Parent=Msa0517390-mRNA-1 |
| chr3_4 | exon | 68988389 | 68988459 | 68988389 | ID=Msa0517390-mRNA-1:exon:18300;Parent=Msa0517390-mRNA-1 |
| chr3_4 | exon | 68988554 | 68988708 | 68988554 | ID=Msa0517390-mRNA-1:exon:18301;Parent=Msa0517390-mRNA-1 |
| chr3_4 | exon | 68988733 | 68988790 | 68988733 | ID=Msa0517390-mRNA-1:exon:18302;Parent=Msa0517390-mRNA-1 |
| chr3_4 | CDS | 68987655 | 68987784 | 68987655 | ID=Msa0517390-mRNA-1:cds;Parent=Msa0517390-mRNA-1 |
| chr3_4 | CDS | 68987979 | 68988058 | 68987979 | ID=Msa0517390-mRNA-1:cds;Parent=Msa0517390-mRNA-1 |
| chr3_4 | CDS | 68988199 | 68988276 | 68988199 | ID=Msa0517390-mRNA-1:cds;Parent=Msa0517390-mRNA-1 |
| chr3_4 | CDS | 68988389 | 68988459 | 68988389 | ID=Msa0517390-mRNA-1:cds;Parent=Msa0517390-mRNA-1 |
| chr3_4 | CDS | 68988554 | 68988662 | 68988554 | ID=Msa0517390-mRNA-1:cds;Parent=Msa0517390-mRNA-1 |
| chr3_4 | three_prime_UTR | 68988663 | 68988708 | 68988663 | ID=Msa0517390-mRNA-1:three_prime_utr;Parent=Msa0517390-mRNA-1 |
| chr3_4 | three_prime_UTR | 68988733 | 68988790 | 68988733 | ID=Msa0517390-mRNA-1:three_prime_utr;Parent=Msa0517390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
