Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472900 | XP_013461496.1 | 92.357 | 157 | 9 | 2 | 1 | 155 | 1 | 156 | 2.35e-99 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472900 | sp|Q9FPR6|ARR17_ARATH | 72.308 | 130 | 36 | 0 | 19 | 148 | 21 | 150 | 2.39e-63 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472900 | A0A072V1G2 | 92.357 | 157 | 9 | 2 | 1 | 155 | 1 | 156 | 1.12e-99 | 292 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0472900 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0426610 | Msa0472900 | 0.955002 | 8.242160e-113 | -8.615850e-47 |
| Msa0472900 | Msa0517390 | 0.920565 | 1.088707e-87 | -8.615850e-47 |
| Msa0472900 | Msa0669840 | 0.810082 | 1.375778e-50 | -8.615850e-47 |
| Msa0472900 | Msa1037900 | 0.809234 | 2.093161e-50 | -8.615850e-47 |
| Msa0472900 | Msa1081570 | 0.805218 | 1.484167e-49 | -8.615850e-47 |
| Msa0472900 | Msa1127140 | 0.820078 | 8.293566e-53 | -8.615850e-47 |
| Msa0472900 | Msa1129960 | 0.807948 | 3.939555e-50 | -8.615850e-47 |
| Msa0472900 | Msa1166400 | 0.821018 | 5.044941e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472900 | MtrunA17_Chr3g0128691 | 92.357 | 157 | 9 | 2 | 1 | 155 | 1 | 156 | 2.16e-103 | 292 |
| Msa0472900 | MtrunA17_Chr3g0118211 | 60.769 | 130 | 50 | 1 | 19 | 148 | 24 | 152 | 7.71e-55 | 171 |
| Msa0472900 | MtrunA17_Chr1g0170741 | 59.259 | 135 | 53 | 1 | 14 | 146 | 4 | 138 | 2.77e-53 | 167 |
| Msa0472900 | MtrunA17_Chr4g0059571 | 60.000 | 130 | 51 | 1 | 19 | 148 | 27 | 155 | 6.94e-53 | 166 |
| Msa0472900 | MtrunA17_Chr5g0414931 | 60.606 | 132 | 47 | 2 | 19 | 146 | 17 | 147 | 3.92e-52 | 165 |
| Msa0472900 | MtrunA17_Chr3g0082861 | 55.714 | 140 | 48 | 2 | 19 | 147 | 5 | 141 | 5.80e-52 | 162 |
| Msa0472900 | MtrunA17_Chr8g0352871 | 57.353 | 136 | 51 | 1 | 19 | 147 | 10 | 145 | 8.72e-52 | 162 |
| Msa0472900 | MtrunA17_Chr7g0256551 | 59.091 | 132 | 46 | 2 | 19 | 142 | 10 | 141 | 1.20e-50 | 162 |
| Msa0472900 | MtrunA17_Chr3g0124861 | 53.191 | 141 | 48 | 2 | 19 | 142 | 23 | 162 | 5.48e-46 | 150 |
| Msa0472900 | MtrunA17_Chr4g0021731 | 60.256 | 78 | 30 | 1 | 19 | 96 | 12 | 88 | 1.40e-27 | 98.6 |
| Msa0472900 | MtrunA17_Chr4g0030271 | 34.959 | 123 | 70 | 1 | 20 | 142 | 91 | 203 | 6.71e-16 | 73.9 |
| Msa0472900 | MtrunA17_Chr1g0181811 | 34.959 | 123 | 70 | 1 | 20 | 142 | 87 | 199 | 6.10e-15 | 70.9 |
| Msa0472900 | MtrunA17_Chr3g0127941 | 30.645 | 124 | 74 | 2 | 20 | 142 | 58 | 170 | 5.80e-14 | 68.2 |
| Msa0472900 | MtrunA17_Chr8g0345901 | 30.894 | 123 | 75 | 1 | 20 | 142 | 38 | 150 | 2.45e-13 | 66.2 |
| Msa0472900 | MtrunA17_Chr7g0276361 | 30.894 | 123 | 75 | 1 | 20 | 142 | 16 | 128 | 3.92e-13 | 65.9 |
| Msa0472900 | MtrunA17_Chr8g0376881 | 28.906 | 128 | 78 | 2 | 20 | 147 | 31 | 145 | 7.76e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472900 | AT3G56380.1 | 72.308 | 130 | 36 | 0 | 19 | 148 | 21 | 150 | 2.43e-64 | 194 |
| Msa0472900 | AT3G56380.2 | 72.519 | 131 | 35 | 1 | 19 | 148 | 21 | 151 | 4.88e-63 | 191 |
| Msa0472900 | AT2G40670.1 | 70.896 | 134 | 33 | 2 | 19 | 148 | 30 | 161 | 7.35e-63 | 191 |
| Msa0472900 | AT2G40670.2 | 71.111 | 135 | 32 | 3 | 19 | 148 | 30 | 162 | 1.51e-61 | 187 |
| Msa0472900 | AT1G10470.3 | 61.719 | 128 | 48 | 1 | 19 | 146 | 21 | 147 | 3.43e-53 | 169 |
| Msa0472900 | AT1G59940.1 | 58.647 | 133 | 54 | 1 | 14 | 146 | 29 | 160 | 5.00e-53 | 168 |
| Msa0472900 | AT1G10470.1 | 61.719 | 128 | 48 | 1 | 19 | 146 | 35 | 161 | 6.37e-53 | 168 |
| Msa0472900 | AT1G59940.2 | 58.647 | 133 | 54 | 1 | 14 | 146 | 121 | 252 | 7.45e-52 | 167 |
| Msa0472900 | AT3G48100.1 | 57.364 | 129 | 55 | 0 | 19 | 147 | 26 | 154 | 1.34e-51 | 162 |
| Msa0472900 | AT5G62920.1 | 58.955 | 134 | 54 | 1 | 19 | 152 | 26 | 158 | 3.22e-51 | 162 |
| Msa0472900 | AT3G57040.2 | 53.623 | 138 | 55 | 1 | 19 | 147 | 10 | 147 | 6.46e-51 | 162 |
| Msa0472900 | AT3G57040.1 | 53.623 | 138 | 55 | 1 | 19 | 147 | 10 | 147 | 6.46e-51 | 162 |
| Msa0472900 | AT2G41310.1 | 51.724 | 145 | 63 | 2 | 10 | 147 | 1 | 145 | 2.33e-50 | 161 |
| Msa0472900 | AT1G74890.1 | 59.091 | 132 | 53 | 1 | 19 | 150 | 19 | 149 | 5.99e-50 | 159 |
| Msa0472900 | AT1G19050.1 | 58.015 | 131 | 52 | 2 | 19 | 148 | 25 | 153 | 3.46e-49 | 157 |
| Msa0472900 | AT1G10470.2 | 50.000 | 74 | 33 | 3 | 75 | 146 | 14 | 85 | 3.19e-15 | 69.7 |
| Msa0472900 | AT5G24470.1 | 31.452 | 124 | 73 | 2 | 20 | 142 | 52 | 164 | 7.07e-14 | 68.2 |
| Msa0472900 | AT5G02810.1 | 31.707 | 123 | 74 | 1 | 20 | 142 | 80 | 192 | 2.13e-12 | 64.3 |
| Msa0472900 | AT5G60100.7 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 2.30e-12 | 63.9 |
| Msa0472900 | AT5G60100.6 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 2.30e-12 | 63.9 |
| Msa0472900 | AT5G60100.4 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 2.30e-12 | 63.9 |
| Msa0472900 | AT5G60100.2 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 2.32e-12 | 63.9 |
| Msa0472900 | AT5G60100.5 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 5.29e-12 | 62.8 |
| Msa0472900 | AT5G60100.3 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 5.29e-12 | 62.8 |
| Msa0472900 | AT5G60100.1 | 33.333 | 123 | 72 | 1 | 20 | 142 | 66 | 178 | 5.29e-12 | 62.8 |
| Msa0472900 | AT2G46790.3 | 28.226 | 124 | 79 | 1 | 19 | 142 | 38 | 151 | 1.90e-11 | 61.2 |
| Msa0472900 | AT2G46790.1 | 28.226 | 124 | 79 | 1 | 19 | 142 | 38 | 151 | 2.29e-11 | 61.2 |
| Msa0472900 | AT5G07210.2 | 30.081 | 123 | 72 | 3 | 20 | 142 | 18 | 126 | 3.30e-11 | 60.8 |
Find 46 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGAAGGCATTGGAGTATT+TGG | 0.158019 | 3_3:+75368937 | Msa0472900:CDS |
| GACAGGCCAGCTGATGAATT+TGG | 0.201243 | 3_3:+75369558 | Msa0472900:CDS |
| ACAGTGACAACTGCTGAAAA+TGG | 0.248549 | 3_3:+75368914 | Msa0472900:intron |
| CTGAAGGCATTGGAGTATTT+GGG | 0.249714 | 3_3:+75368938 | Msa0472900:CDS |
| CTCCTAAGCATATCTTATTA+AGG | 0.319448 | 3_3:-75369637 | None:intergenic |
| GTAGGGACCCAAAGTGAATT+TGG | 0.331645 | 3_3:+75369134 | Msa0472900:intron |
| AATTACTTGTTGATCCTTGT+TGG | 0.359191 | 3_3:-75369382 | None:intergenic |
| TCAAAGTGGGTGATGGAAAA+TGG | 0.361841 | 3_3:+75368615 | Msa0472900:CDS |
| AGGATGTTGTACTCTAGTTT+AGG | 0.370041 | 3_3:+75369683 | Msa0472900:three_prime_UTR |
| TGAGTTGCTTAAGAAAATTA+AGG | 0.374516 | 3_3:+75369194 | Msa0472900:CDS |
| ACAGGCCAGCTGATGAATTT+GGG | 0.393986 | 3_3:+75369559 | Msa0472900:CDS |
| TACTGCATGCCAGGGATGAC+TGG | 0.411671 | 3_3:+75369168 | Msa0472900:CDS |
| GTGATGACCAAATTCACTTT+GGG | 0.424646 | 3_3:-75369141 | None:intergenic |
| ATCACAGACTACTGCATGCC+AGG | 0.428078 | 3_3:+75369159 | Msa0472900:CDS |
| TTCTTCTTCAAAGTGGGTGA+TGG | 0.456607 | 3_3:+75368608 | Msa0472900:CDS |
| CTGATTCTTCTTCTTCAAAG+TGG | 0.467692 | 3_3:+75368601 | Msa0472900:CDS |
| TGATTCTTCTTCTTCAAAGT+GGG | 0.471982 | 3_3:+75368602 | Msa0472900:CDS |
| ACCTTCCCAAATTCATCAGC+TGG | 0.476038 | 3_3:-75369564 | None:intergenic |
| TCAGATGACATGATCACAAC+AGG | 0.480037 | 3_3:-75369352 | None:intergenic |
| TCAGCAATCATCTGTGATGA+AGG | 0.481432 | 3_3:+75369324 | Msa0472900:intron |
| TGTGATGACCAAATTCACTT+TGG | 0.486577 | 3_3:-75369142 | None:intergenic |
| GAACAGAACACTTTGGAGAA+TGG | 0.490659 | 3_3:+75368974 | Msa0472900:CDS |
| GGCCTTAATAAGATATGCTT+AGG | 0.492435 | 3_3:+75369635 | Msa0472900:three_prime_UTR |
| GCATATCTTATTAAGGCCTA+AGG | 0.498738 | 3_3:-75369630 | None:intergenic |
| CAGTGACAACTGCTGAAAAT+GGG | 0.502968 | 3_3:+75368915 | Msa0472900:intron |
| TTTACATCAGATTGTTTGAG+AGG | 0.513388 | 3_3:-75369529 | None:intergenic |
| TGAAAATGGGCTGAAGGCAT+TGG | 0.515465 | 3_3:+75368928 | Msa0472900:CDS |
| AACTCATAGCCAGTCATCCC+TGG | 0.516855 | 3_3:-75369177 | None:intergenic |
| AAAAGCAGGTGTATGGAAGA+AGG | 0.535716 | 3_3:+75369484 | Msa0472900:intron |
| AAAGCAGGTGTATGGAAGAA+GGG | 0.542181 | 3_3:+75369485 | Msa0472900:intron |
| CATATCTTATTAAGGCCTAA+GGG | 0.549802 | 3_3:-75369629 | None:intergenic |
| AACTGCTGAAAATGGGCTGA+AGG | 0.568007 | 3_3:+75368922 | Msa0472900:CDS |
| CAATGCAAGATATCACCCTT+AGG | 0.568702 | 3_3:+75369614 | Msa0472900:three_prime_UTR |
| AATAAGATATGCTTAGGAGT+AGG | 0.581556 | 3_3:+75369641 | Msa0472900:three_prime_UTR |
| CTCAAGAATTCCTCTTGCAA+AGG | 0.589496 | 3_3:+75368702 | Msa0472900:CDS |
| GCCAGCTGATGAATTTGGGA+AGG | 0.598518 | 3_3:+75369563 | Msa0472900:CDS |
| AAGCAGGTGTATGGAAGAAG+GGG | 0.612241 | 3_3:+75369486 | Msa0472900:intron |
| TCACAGACTACTGCATGCCA+GGG | 0.612620 | 3_3:+75369160 | Msa0472900:CDS |
| CTTTGCAAGAGGAATTCTTG+AGG | 0.621330 | 3_3:-75368701 | None:intergenic |
| TCTGATGTAAAACAACTGAC+AGG | 0.621647 | 3_3:+75369541 | Msa0472900:CDS |
| TCATCAACAGCAAGAACATG+AGG | 0.625979 | 3_3:-75368645 | None:intergenic |
| AAGTGGTGAACAGAACACTT+TGG | 0.626039 | 3_3:+75368967 | Msa0472900:CDS |
| GAGTATTTGGGCTTGTCAAG+TGG | 0.627865 | 3_3:+75368950 | Msa0472900:CDS |
| GGTGTACGTACCTTTGCAAG+AGG | 0.636893 | 3_3:-75368712 | None:intergenic |
| GCAATCATCTGTGATGAAGG+AGG | 0.667691 | 3_3:+75369327 | Msa0472900:intron |
| CATCTGAGAATATACCAACA+AGG | 0.683899 | 3_3:+75369368 | Msa0472900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGAATATAACAGAAAA+TGG | - | chr3_3:75368752-75368771 | None:intergenic | 15.0% |
| !! | AGAAAAAGATACAAAAAAAA+TGG | - | chr3_3:75369431-75369450 | None:intergenic | 15.0% |
| !! | AAAAAGAATATAACAGAAAA+TGG | - | chr3_3:75368752-75368771 | None:intergenic | 15.0% |
| !! | AGAAAAAGATACAAAAAAAA+TGG | - | chr3_3:75369431-75369450 | None:intergenic | 15.0% |
| !!! | TGATGTTTGATGTTTTTTTT+TGG | + | chr3_3:75368839-75368858 | Msa0472900:intron | 20.0% |
| !!! | TTTTTTTTTGGTCCATATTT+TGG | + | chr3_3:75368851-75368870 | Msa0472900:intron | 20.0% |
| !! | TGAAAATAATATCCAATTTG+GGG | - | chr3_3:75369307-75369326 | None:intergenic | 20.0% |
| !! | CTGAAAATAATATCCAATTT+GGG | - | chr3_3:75369308-75369327 | None:intergenic | 20.0% |
| !!! | TGATGTTTGATGTTTTTTTT+TGG | + | chr3_3:75368839-75368858 | Msa0472900:intron | 20.0% |
| !!! | TTTTTTTTTGGTCCATATTT+TGG | + | chr3_3:75368851-75368870 | Msa0472900:intron | 20.0% |
| !! | TGAAAATAATATCCAATTTG+GGG | - | chr3_3:75369307-75369326 | None:intergenic | 20.0% |
| !! | CTGAAAATAATATCCAATTT+GGG | - | chr3_3:75369308-75369327 | None:intergenic | 20.0% |
| !!! | GTGTTTTGTTAGTAACATTT+TGG | - | chr3_3:75369032-75369051 | None:intergenic | 25.0% |
| ! | TGAGTTGCTTAAGAAAATTA+AGG | + | chr3_3:75369194-75369213 | Msa0472900:CDS | 25.0% |
| ! | GCTGAAAATAATATCCAATT+TGG | - | chr3_3:75369309-75369328 | None:intergenic | 25.0% |
| !!! | GTGTTTTGTTAGTAACATTT+TGG | - | chr3_3:75369032-75369051 | None:intergenic | 25.0% |
| ! | TGAGTTGCTTAAGAAAATTA+AGG | + | chr3_3:75369194-75369213 | Msa0472900:CDS | 25.0% |
| ! | GCTGAAAATAATATCCAATT+TGG | - | chr3_3:75369309-75369328 | None:intergenic | 25.0% |
| TGATTCTTCTTCTTCAAAGT+GGG | + | chr3_3:75368602-75368621 | Msa0472900:CDS | 30.0% | |
| CAAACAGAATCACCAAAATA+TGG | - | chr3_3:75368866-75368885 | None:intergenic | 30.0% | |
| GTGATTCTGTTTGATTGAAT+GGG | + | chr3_3:75368873-75368892 | Msa0472900:intron | 30.0% | |
| !!! | TGACTATTTCTGGTTTTTGT+AGG | + | chr3_3:75369116-75369135 | Msa0472900:intron | 30.0% |
| !!! | GACTATTTCTGGTTTTTGTA+GGG | + | chr3_3:75369117-75369136 | Msa0472900:intron | 30.0% |
| AAATAATATCCAATTTGGGG+TGG | - | chr3_3:75369304-75369323 | None:intergenic | 30.0% | |
| ! | AATTACTTGTTGATCCTTGT+TGG | - | chr3_3:75369385-75369404 | None:intergenic | 30.0% |
| TTTACATCAGATTGTTTGAG+AGG | - | chr3_3:75369532-75369551 | None:intergenic | 30.0% | |
| CATATCTTATTAAGGCCTAA+GGG | - | chr3_3:75369632-75369651 | None:intergenic | 30.0% | |
| CTCCTAAGCATATCTTATTA+AGG | - | chr3_3:75369640-75369659 | None:intergenic | 30.0% | |
| AATAAGATATGCTTAGGAGT+AGG | + | chr3_3:75369641-75369660 | Msa0472900:three_prime_UTR | 30.0% | |
| !! | GAATGCATATCATTGTTTTG+AGG | + | chr3_3:75369663-75369682 | Msa0472900:three_prime_UTR | 30.0% |
| TGATTCTTCTTCTTCAAAGT+GGG | + | chr3_3:75368602-75368621 | Msa0472900:CDS | 30.0% | |
| CAAACAGAATCACCAAAATA+TGG | - | chr3_3:75368866-75368885 | None:intergenic | 30.0% | |
| GTGATTCTGTTTGATTGAAT+GGG | + | chr3_3:75368873-75368892 | Msa0472900:intron | 30.0% | |
| !!! | TGACTATTTCTGGTTTTTGT+AGG | + | chr3_3:75369116-75369135 | Msa0472900:intron | 30.0% |
| !!! | GACTATTTCTGGTTTTTGTA+GGG | + | chr3_3:75369117-75369136 | Msa0472900:intron | 30.0% |
| AAATAATATCCAATTTGGGG+TGG | - | chr3_3:75369304-75369323 | None:intergenic | 30.0% | |
| ! | AATTACTTGTTGATCCTTGT+TGG | - | chr3_3:75369385-75369404 | None:intergenic | 30.0% |
| TTTACATCAGATTGTTTGAG+AGG | - | chr3_3:75369532-75369551 | None:intergenic | 30.0% | |
| CATATCTTATTAAGGCCTAA+GGG | - | chr3_3:75369632-75369651 | None:intergenic | 30.0% | |
| CTCCTAAGCATATCTTATTA+AGG | - | chr3_3:75369640-75369659 | None:intergenic | 30.0% | |
| AATAAGATATGCTTAGGAGT+AGG | + | chr3_3:75369641-75369660 | Msa0472900:three_prime_UTR | 30.0% | |
| !! | GAATGCATATCATTGTTTTG+AGG | + | chr3_3:75369663-75369682 | Msa0472900:three_prime_UTR | 30.0% |
| CTGATTCTTCTTCTTCAAAG+TGG | + | chr3_3:75368601-75368620 | Msa0472900:CDS | 35.0% | |
| AAAATGGTTGAGTGAGAGAT+AGG | - | chr3_3:75368736-75368755 | None:intergenic | 35.0% | |
| GGTGATTCTGTTTGATTGAA+TGG | + | chr3_3:75368872-75368891 | Msa0472900:intron | 35.0% | |
| !! | TGATTGAATGGGCTTTTTGT+TGG | + | chr3_3:75368884-75368903 | Msa0472900:intron | 35.0% |
| TGCTAACAAGTGACTATTTC+TGG | + | chr3_3:75369106-75369125 | Msa0472900:intron | 35.0% | |
| GTGATGACCAAATTCACTTT+GGG | - | chr3_3:75369144-75369163 | None:intergenic | 35.0% | |
| TGTGATGACCAAATTCACTT+TGG | - | chr3_3:75369145-75369164 | None:intergenic | 35.0% | |
| CATCTGAGAATATACCAACA+AGG | + | chr3_3:75369368-75369387 | Msa0472900:CDS | 35.0% | |
| AAAAATGGCATTGTTAGTGC+TGG | - | chr3_3:75369416-75369435 | None:intergenic | 35.0% | |
| TCTGATGTAAAACAACTGAC+AGG | + | chr3_3:75369541-75369560 | Msa0472900:CDS | 35.0% | |
| GCATATCTTATTAAGGCCTA+AGG | - | chr3_3:75369633-75369652 | None:intergenic | 35.0% | |
| GGCCTTAATAAGATATGCTT+AGG | + | chr3_3:75369635-75369654 | Msa0472900:three_prime_UTR | 35.0% | |
| CTGATTCTTCTTCTTCAAAG+TGG | + | chr3_3:75368601-75368620 | Msa0472900:CDS | 35.0% | |
| AAAATGGTTGAGTGAGAGAT+AGG | - | chr3_3:75368736-75368755 | None:intergenic | 35.0% | |
| GGTGATTCTGTTTGATTGAA+TGG | + | chr3_3:75368872-75368891 | Msa0472900:intron | 35.0% | |
| !! | TGATTGAATGGGCTTTTTGT+TGG | + | chr3_3:75368884-75368903 | Msa0472900:intron | 35.0% |
| TGCTAACAAGTGACTATTTC+TGG | + | chr3_3:75369106-75369125 | Msa0472900:intron | 35.0% | |
| GTGATGACCAAATTCACTTT+GGG | - | chr3_3:75369144-75369163 | None:intergenic | 35.0% | |
| TGTGATGACCAAATTCACTT+TGG | - | chr3_3:75369145-75369164 | None:intergenic | 35.0% | |
| CATCTGAGAATATACCAACA+AGG | + | chr3_3:75369368-75369387 | Msa0472900:CDS | 35.0% | |
| AAAAATGGCATTGTTAGTGC+TGG | - | chr3_3:75369416-75369435 | None:intergenic | 35.0% | |
| TCTGATGTAAAACAACTGAC+AGG | + | chr3_3:75369541-75369560 | Msa0472900:CDS | 35.0% | |
| GCATATCTTATTAAGGCCTA+AGG | - | chr3_3:75369633-75369652 | None:intergenic | 35.0% | |
| GGCCTTAATAAGATATGCTT+AGG | + | chr3_3:75369635-75369654 | Msa0472900:three_prime_UTR | 35.0% | |
| TTCTTCTTCAAAGTGGGTGA+TGG | + | chr3_3:75368608-75368627 | Msa0472900:CDS | 40.0% | |
| !! | TCAAAGTGGGTGATGGAAAA+TGG | + | chr3_3:75368615-75368634 | Msa0472900:CDS | 40.0% |
| TCATCAACAGCAAGAACATG+AGG | - | chr3_3:75368648-75368667 | None:intergenic | 40.0% | |
| CTTTGCAAGAGGAATTCTTG+AGG | - | chr3_3:75368704-75368723 | None:intergenic | 40.0% | |
| CTCAAGAATTCCTCTTGCAA+AGG | + | chr3_3:75368702-75368721 | Msa0472900:CDS | 40.0% | |
| ACAGTGACAACTGCTGAAAA+TGG | + | chr3_3:75368914-75368933 | Msa0472900:intron | 40.0% | |
| CAGTGACAACTGCTGAAAAT+GGG | + | chr3_3:75368915-75368934 | Msa0472900:intron | 40.0% | |
| !! | CTGAAGGCATTGGAGTATTT+GGG | + | chr3_3:75368938-75368957 | Msa0472900:CDS | 40.0% |
| AAGTGGTGAACAGAACACTT+TGG | + | chr3_3:75368967-75368986 | Msa0472900:CDS | 40.0% | |
| ! | GAACAGAACACTTTGGAGAA+TGG | + | chr3_3:75368974-75368993 | Msa0472900:CDS | 40.0% |
| TAACACTAACCACCCCAAAT+TGG | + | chr3_3:75369292-75369311 | Msa0472900:intron | 40.0% | |
| TCAGCAATCATCTGTGATGA+AGG | + | chr3_3:75369324-75369343 | Msa0472900:intron | 40.0% | |
| TCAGATGACATGATCACAAC+AGG | - | chr3_3:75369355-75369374 | None:intergenic | 40.0% | |
| CAGCACAACAATGATTGAGT+AGG | - | chr3_3:75369463-75369482 | None:intergenic | 40.0% | |
| CATTGTTGTGCTGAAAAAGC+AGG | + | chr3_3:75369470-75369489 | Msa0472900:intron | 40.0% | |
| AAAAGCAGGTGTATGGAAGA+AGG | + | chr3_3:75369484-75369503 | Msa0472900:intron | 40.0% | |
| AAAGCAGGTGTATGGAAGAA+GGG | + | chr3_3:75369485-75369504 | Msa0472900:intron | 40.0% | |
| CAATGCAAGATATCACCCTT+AGG | + | chr3_3:75369614-75369633 | Msa0472900:three_prime_UTR | 40.0% | |
| TTCTTCTTCAAAGTGGGTGA+TGG | + | chr3_3:75368608-75368627 | Msa0472900:CDS | 40.0% | |
| !! | TCAAAGTGGGTGATGGAAAA+TGG | + | chr3_3:75368615-75368634 | Msa0472900:CDS | 40.0% |
| TCATCAACAGCAAGAACATG+AGG | - | chr3_3:75368648-75368667 | None:intergenic | 40.0% | |
| CTTTGCAAGAGGAATTCTTG+AGG | - | chr3_3:75368704-75368723 | None:intergenic | 40.0% | |
| CTCAAGAATTCCTCTTGCAA+AGG | + | chr3_3:75368702-75368721 | Msa0472900:CDS | 40.0% | |
| ACAGTGACAACTGCTGAAAA+TGG | + | chr3_3:75368914-75368933 | Msa0472900:intron | 40.0% | |
| CAGTGACAACTGCTGAAAAT+GGG | + | chr3_3:75368915-75368934 | Msa0472900:intron | 40.0% | |
| !! | CTGAAGGCATTGGAGTATTT+GGG | + | chr3_3:75368938-75368957 | Msa0472900:CDS | 40.0% |
| AAGTGGTGAACAGAACACTT+TGG | + | chr3_3:75368967-75368986 | Msa0472900:CDS | 40.0% | |
| ! | GAACAGAACACTTTGGAGAA+TGG | + | chr3_3:75368974-75368993 | Msa0472900:CDS | 40.0% |
| TAACACTAACCACCCCAAAT+TGG | + | chr3_3:75369292-75369311 | Msa0472900:intron | 40.0% | |
| TCAGCAATCATCTGTGATGA+AGG | + | chr3_3:75369324-75369343 | Msa0472900:intron | 40.0% | |
| TCAGATGACATGATCACAAC+AGG | - | chr3_3:75369355-75369374 | None:intergenic | 40.0% | |
| CAGCACAACAATGATTGAGT+AGG | - | chr3_3:75369463-75369482 | None:intergenic | 40.0% | |
| CATTGTTGTGCTGAAAAAGC+AGG | + | chr3_3:75369470-75369489 | Msa0472900:intron | 40.0% | |
| AAAAGCAGGTGTATGGAAGA+AGG | + | chr3_3:75369484-75369503 | Msa0472900:intron | 40.0% | |
| AAAGCAGGTGTATGGAAGAA+GGG | + | chr3_3:75369485-75369504 | Msa0472900:intron | 40.0% | |
| CAATGCAAGATATCACCCTT+AGG | + | chr3_3:75369614-75369633 | Msa0472900:three_prime_UTR | 40.0% | |
| !! | AACTGCTGAAAATGGGCTGA+AGG | + | chr3_3:75368922-75368941 | Msa0472900:CDS | 45.0% |
| !! | TGAAAATGGGCTGAAGGCAT+TGG | + | chr3_3:75368928-75368947 | Msa0472900:CDS | 45.0% |
| !! | GCTGAAGGCATTGGAGTATT+TGG | + | chr3_3:75368937-75368956 | Msa0472900:CDS | 45.0% |
| GAGTATTTGGGCTTGTCAAG+TGG | + | chr3_3:75368950-75368969 | Msa0472900:CDS | 45.0% | |
| GTAGGGACCCAAAGTGAATT+TGG | + | chr3_3:75369134-75369153 | Msa0472900:intron | 45.0% | |
| GCAATCATCTGTGATGAAGG+AGG | + | chr3_3:75369327-75369346 | Msa0472900:intron | 45.0% | |
| GTGCTGAAAAAGCAGGTGTA+TGG | + | chr3_3:75369477-75369496 | Msa0472900:intron | 45.0% | |
| AAGCAGGTGTATGGAAGAAG+GGG | + | chr3_3:75369486-75369505 | Msa0472900:intron | 45.0% | |
| ACAGGCCAGCTGATGAATTT+GGG | + | chr3_3:75369559-75369578 | Msa0472900:CDS | 45.0% | |
| ACCTTCCCAAATTCATCAGC+TGG | - | chr3_3:75369567-75369586 | None:intergenic | 45.0% | |
| !! | AACTGCTGAAAATGGGCTGA+AGG | + | chr3_3:75368922-75368941 | Msa0472900:CDS | 45.0% |
| !! | TGAAAATGGGCTGAAGGCAT+TGG | + | chr3_3:75368928-75368947 | Msa0472900:CDS | 45.0% |
| !! | GCTGAAGGCATTGGAGTATT+TGG | + | chr3_3:75368937-75368956 | Msa0472900:CDS | 45.0% |
| GAGTATTTGGGCTTGTCAAG+TGG | + | chr3_3:75368950-75368969 | Msa0472900:CDS | 45.0% | |
| GTAGGGACCCAAAGTGAATT+TGG | + | chr3_3:75369134-75369153 | Msa0472900:intron | 45.0% | |
| GCAATCATCTGTGATGAAGG+AGG | + | chr3_3:75369327-75369346 | Msa0472900:intron | 45.0% | |
| GTGCTGAAAAAGCAGGTGTA+TGG | + | chr3_3:75369477-75369496 | Msa0472900:intron | 45.0% | |
| AAGCAGGTGTATGGAAGAAG+GGG | + | chr3_3:75369486-75369505 | Msa0472900:intron | 45.0% | |
| ACAGGCCAGCTGATGAATTT+GGG | + | chr3_3:75369559-75369578 | Msa0472900:CDS | 45.0% | |
| ACCTTCCCAAATTCATCAGC+TGG | - | chr3_3:75369567-75369586 | None:intergenic | 45.0% | |
| GGTGTACGTACCTTTGCAAG+AGG | - | chr3_3:75368715-75368734 | None:intergenic | 50.0% | |
| ATCACAGACTACTGCATGCC+AGG | + | chr3_3:75369159-75369178 | Msa0472900:CDS | 50.0% | |
| TCACAGACTACTGCATGCCA+GGG | + | chr3_3:75369160-75369179 | Msa0472900:CDS | 50.0% | |
| AACTCATAGCCAGTCATCCC+TGG | - | chr3_3:75369180-75369199 | None:intergenic | 50.0% | |
| GACAGGCCAGCTGATGAATT+TGG | + | chr3_3:75369558-75369577 | Msa0472900:CDS | 50.0% | |
| GCCAGCTGATGAATTTGGGA+AGG | + | chr3_3:75369563-75369582 | Msa0472900:CDS | 50.0% | |
| GGTGTACGTACCTTTGCAAG+AGG | - | chr3_3:75368715-75368734 | None:intergenic | 50.0% | |
| ATCACAGACTACTGCATGCC+AGG | + | chr3_3:75369159-75369178 | Msa0472900:CDS | 50.0% | |
| TCACAGACTACTGCATGCCA+GGG | + | chr3_3:75369160-75369179 | Msa0472900:CDS | 50.0% | |
| AACTCATAGCCAGTCATCCC+TGG | - | chr3_3:75369180-75369199 | None:intergenic | 50.0% | |
| GACAGGCCAGCTGATGAATT+TGG | + | chr3_3:75369558-75369577 | Msa0472900:CDS | 50.0% | |
| GCCAGCTGATGAATTTGGGA+AGG | + | chr3_3:75369563-75369582 | Msa0472900:CDS | 50.0% | |
| TACTGCATGCCAGGGATGAC+TGG | + | chr3_3:75369168-75369187 | Msa0472900:CDS | 55.0% | |
| TACTGCATGCCAGGGATGAC+TGG | + | chr3_3:75369168-75369187 | Msa0472900:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 75368594 | 75369704 | 75368594 | ID=Msa0472900;Name=Msa0472900 |
| chr3_3 | mRNA | 75368594 | 75369704 | 75368594 | ID=Msa0472900-mRNA-1;Parent=Msa0472900;Name=Msa0472900-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|1|0.8|1|1|1|5|104|155 |
| chr3_3 | exon | 75368594 | 75368723 | 75368594 | ID=Msa0472900-mRNA-1:exon:19503;Parent=Msa0472900-mRNA-1 |
| chr3_3 | exon | 75368918 | 75368997 | 75368918 | ID=Msa0472900-mRNA-1:exon:19504;Parent=Msa0472900-mRNA-1 |
| chr3_3 | exon | 75369138 | 75369215 | 75369138 | ID=Msa0472900-mRNA-1:exon:19505;Parent=Msa0472900-mRNA-1 |
| chr3_3 | exon | 75369328 | 75369398 | 75369328 | ID=Msa0472900-mRNA-1:exon:19506;Parent=Msa0472900-mRNA-1 |
| chr3_3 | exon | 75369492 | 75369704 | 75369492 | ID=Msa0472900-mRNA-1:exon:19507;Parent=Msa0472900-mRNA-1 |
| chr3_3 | CDS | 75368594 | 75368723 | 75368594 | ID=Msa0472900-mRNA-1:cds;Parent=Msa0472900-mRNA-1 |
| chr3_3 | CDS | 75368918 | 75368997 | 75368918 | ID=Msa0472900-mRNA-1:cds;Parent=Msa0472900-mRNA-1 |
| chr3_3 | CDS | 75369138 | 75369215 | 75369138 | ID=Msa0472900-mRNA-1:cds;Parent=Msa0472900-mRNA-1 |
| chr3_3 | CDS | 75369328 | 75369398 | 75369328 | ID=Msa0472900-mRNA-1:cds;Parent=Msa0472900-mRNA-1 |
| chr3_3 | CDS | 75369492 | 75369600 | 75369492 | ID=Msa0472900-mRNA-1:cds;Parent=Msa0472900-mRNA-1 |
| chr3_3 | three_prime_UTR | 75369601 | 75369704 | 75369601 | ID=Msa0472900-mRNA-1:three_prime_utr;Parent=Msa0472900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
