AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1129960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129960 MtrunA17_Chr7g0274991 99.458 369 2 0 1 369 1 369 0.0 754
Msa1129960 MtrunA17_Chr4g0008851 76.011 371 86 2 1 369 1 370 0.0 590
Msa1129960 MtrunA17_Chr7g0275011 71.309 359 103 0 10 368 11 369 0.0 547
Msa1129960 MtrunA17_Chr7g0275001 71.751 354 98 2 17 369 10 362 0.0 533
Msa1129960 MtrunA17_Chr1g0189931 68.347 357 110 2 12 366 10 365 0.0 528
Msa1129960 MtrunA17_Chr1g0189901 68.362 354 111 1 14 367 13 365 0.0 514
Msa1129960 MtrunA17_Chr6g0457921 67.036 361 116 2 12 369 6 366 0.0 508
Msa1129960 MtrunA17_Chr7g0275021 65.934 364 115 2 15 369 7 370 0.0 506
Msa1129960 MtrunA17_Chr7g0215961 65.840 363 108 3 10 369 7 356 5.44e-177 496
Msa1129960 MtrunA17_Chr1g0182811 65.123 367 124 3 5 367 3 369 1.48e-175 493
Msa1129960 MtrunA17_Chr1g0189891 66.272 338 107 3 32 368 28 359 1.20e-162 459
Msa1129960 MtrunA17_Chr5g0434621 39.942 343 194 6 7 347 5 337 3.16e-85 262
Msa1129960 MtrunA17_Chr4g0068441 39.394 330 195 4 33 359 35 362 3.20e-80 250
Msa1129960 MtrunA17_Chr8g0374101 38.674 362 208 9 14 362 13 373 8.99e-80 249
Msa1129960 MtrunA17_Chr2g0294311 38.857 350 191 7 30 363 29 371 7.26e-75 236
Msa1129960 MtrunA17_Chr2g0294301 36.080 352 219 5 15 363 18 366 1.67e-74 235
Msa1129960 MtrunA17_Chr8g0380041 36.088 363 226 5 6 365 4 363 1.45e-73 233
Msa1129960 MtrunA17_Chr3g0131321 37.725 334 197 4 33 359 34 363 2.91e-73 233
Msa1129960 MtrunA17_Chr2g0285061 39.053 338 195 7 34 365 33 365 3.36e-72 229
Msa1129960 MtrunA17_Chr3g0086641 37.088 364 215 8 8 362 9 367 8.77e-72 228
Msa1129960 MtrunA17_Chr5g0438621 35.549 346 207 7 15 348 3 344 2.96e-71 226
Msa1129960 MtrunA17_Chr4g0017431 34.659 352 226 3 14 362 10 360 3.00e-71 226
Msa1129960 MtrunA17_Chr3g0077571 35.775 355 223 5 11 365 8 357 1.88e-69 222
Msa1129960 MtrunA17_Chr5g0438631 36.795 337 203 6 13 342 5 338 6.49e-69 220
Msa1129960 MtrunA17_Chr5g0438641 33.908 348 221 7 1 344 1 343 8.09e-69 220
Msa1129960 MtrunA17_Chr3g0105401 36.909 317 187 6 33 342 28 338 9.55e-69 219
Msa1129960 MtrunA17_Chr5g0444401 33.426 359 224 7 13 363 9 360 2.93e-66 214
Msa1129960 MtrunA17_Chr3g0099161 35.230 369 213 11 9 365 72 426 3.37e-66 215
Msa1129960 MtrunA17_Chr3g0120861 33.533 334 215 6 26 355 31 361 4.82e-66 213
Msa1129960 MtrunA17_Chr3g0092131 36.825 315 195 4 35 347 25 337 9.44e-66 212
Msa1129960 MtrunA17_Chr5g0432101 33.623 345 218 6 8 344 5 346 1.01e-65 212
Msa1129960 MtrunA17_Chr8g0371491 38.462 312 180 6 33 338 36 341 7.43e-65 210
Msa1129960 MtrunA17_Chr8g0341001 33.989 356 218 9 1 348 2 348 1.26e-64 209
Msa1129960 MtrunA17_Chr3g0099151 33.884 363 226 7 12 365 65 422 2.92e-64 210
Msa1129960 MtrunA17_Chr1g0156921 35.692 325 193 6 27 343 36 352 5.70e-64 207
Msa1129960 MtrunA17_Chr4g0060811 36.508 315 196 4 35 347 29 341 1.66e-63 207
Msa1129960 MtrunA17_Chr3g0099231 34.218 339 208 6 33 363 28 359 2.60e-63 207
Msa1129960 MtrunA17_Chr3g0085881 37.059 340 196 9 26 363 28 351 5.75e-63 205
Msa1129960 MtrunA17_Chr2g0330781 34.835 333 199 9 23 348 26 347 6.10e-63 205
Msa1129960 MtrunA17_Chr5g0396511 34.036 332 216 3 35 364 48 378 7.74e-63 205
Msa1129960 MtrunA17_Chr3g0077581 35.015 337 211 7 34 365 37 370 3.21e-62 203
Msa1129960 MtrunA17_Chr2g0301641 33.241 361 225 6 12 363 22 375 3.41e-60 199
Msa1129960 MtrunA17_Chr5g0405831 35.962 317 190 7 33 342 43 353 7.59e-60 197
Msa1129960 MtrunA17_Chr1g0156891 36.250 320 198 5 27 343 37 353 6.65e-59 194
Msa1129960 MtrunA17_Chr1g0156931 33.623 345 214 7 8 347 19 353 7.57e-59 194
Msa1129960 MtrunA17_Chr2g0320671 33.828 337 217 5 15 348 12 345 5.31e-58 192
Msa1129960 MtrunA17_Chr1g0189911 55.479 146 64 1 222 366 2 147 1.42e-57 184
Msa1129960 MtrunA17_Chr8g0380031 33.236 343 215 6 25 365 76 406 7.53e-57 190
Msa1129960 MtrunA17_Chr8g0371481 31.805 349 224 8 10 347 11 356 8.78e-57 189
Msa1129960 MtrunA17_Chr4g0046151 33.046 348 212 10 15 348 20 360 1.12e-56 189
Msa1129960 MtrunA17_Chr1g0156901 34.431 334 205 6 27 355 44 368 2.68e-56 188
Msa1129960 MtrunA17_Chr2g0283191 32.022 356 217 8 3 338 2 352 5.55e-56 187
Msa1129960 MtrunA17_Chr1g0156911 34.169 319 205 4 27 343 31 346 1.13e-55 186
Msa1129960 MtrunA17_Chr8g0371471 32.710 321 204 6 33 347 41 355 1.79e-55 186
Msa1129960 MtrunA17_Chr2g0284951 32.687 361 215 9 14 363 10 353 1.85e-55 186
Msa1129960 MtrunA17_Chr3g0142941 32.716 324 203 6 27 343 41 356 4.38e-55 185
Msa1129960 MtrunA17_Chr5g0405821 34.591 318 194 8 33 342 43 354 1.57e-54 183
Msa1129960 MtrunA17_Chr2g0285001 33.803 355 217 9 18 363 14 359 4.46e-54 182
Msa1129960 MtrunA17_Chr4g0027521 32.448 339 214 7 18 347 12 344 2.49e-53 180
Msa1129960 MtrunA17_Chr8g0349321 31.818 374 219 10 10 363 6 363 3.56e-53 180
Msa1129960 MtrunA17_Chr2g0284991 30.748 361 228 8 8 362 13 357 5.48e-53 179
Msa1129960 MtrunA17_Chr8g0349341 32.075 371 219 11 8 363 11 363 2.70e-52 177
Msa1129960 MtrunA17_Chr8g0370951 31.720 372 224 11 10 362 5 365 4.59e-52 177
Msa1129960 MtrunA17_Chr3g0142921 32.229 332 216 6 27 355 30 355 2.13e-50 172
Msa1129960 MtrunA17_Chr1g0157001 32.647 340 206 7 38 362 41 372 2.01e-49 170
Msa1129960 MtrunA17_Chr2g0284921 32.595 316 200 7 29 341 30 335 2.02e-49 170
Msa1129960 MtrunA17_Chr1g0189921 68.033 122 36 2 8 127 5 125 1.09e-48 161
Msa1129960 MtrunA17_Chr8g0370981 30.026 383 211 7 31 363 42 417 1.47e-48 169
Msa1129960 MtrunA17_Chr5g0437421 29.412 323 215 5 30 343 29 347 1.80e-47 164
Msa1129960 MtrunA17_Chr7g0228261 64.211 95 34 0 274 368 1 95 4.07e-45 150
Msa1129960 MtrunA17_Chr5g0420811 32.099 324 193 10 33 348 33 337 9.35e-45 157
Msa1129960 MtrunA17_Chr2g0284941 31.198 359 210 8 8 363 13 337 2.45e-44 156
Msa1129960 MtrunA17_Chr8g0344931 29.189 370 228 11 9 362 7 358 1.01e-43 155
Msa1129960 MtrunA17_Chr8g0349301 32.812 320 181 10 10 313 6 307 4.84e-43 152
Msa1129960 MtrunA17_Chr8g0344941 30.183 328 202 10 32 345 40 354 4.38e-42 151
Msa1129960 MtrunA17_Chr3g0085231 26.647 334 226 7 33 363 31 348 1.19e-40 146
Msa1129960 MtrunA17_Chr8g0349331 29.348 368 201 9 8 363 11 331 2.92e-39 142
Msa1129960 MtrunA17_Chr8g0370961 29.958 237 154 4 130 362 14 242 3.70e-38 137
Msa1129960 MtrunA17_Chr1g0160031 30.645 372 206 14 8 349 19 368 7.59e-36 134
Msa1129960 MtrunA17_Chr1g0160011 29.781 366 212 13 14 350 21 370 4.57e-32 124
Msa1129960 MtrunA17_Chr7g0229591 40.000 175 100 3 12 182 6 179 2.31e-31 118
Msa1129960 MtrunA17_Chr6g0455661 29.018 224 156 2 131 352 238 460 2.47e-31 123
Msa1129960 MtrunA17_Chr6g0455661 51.064 94 43 2 31 124 29 119 1.85e-19 89.7
Msa1129960 MtrunA17_Chr6g0459921 28.700 223 156 2 131 351 127 348 3.27e-31 121
Msa1129960 MtrunA17_Chr7g0271551 28.274 336 210 11 35 356 38 356 1.47e-30 119
Msa1129960 MtrunA17_Chr8g0381581 26.772 381 226 15 7 349 9 374 1.57e-29 117
Msa1129960 MtrunA17_Chr1g0159991 30.028 353 192 13 33 350 36 368 4.66e-29 115
Msa1129960 MtrunA17_Chr7g0254461 27.838 370 213 15 28 360 38 390 7.38e-29 115
Msa1129960 MtrunA17_Chr2g0283481 29.545 352 216 13 33 362 47 388 3.58e-28 114
Msa1129960 MtrunA17_Chr1g0159971 28.490 351 202 13 32 350 46 379 2.56e-27 111
Msa1129960 MtrunA17_Chr6g0450731 28.219 365 218 13 12 350 3 349 4.57e-27 110
Msa1129960 MtrunA17_Chr4g0027571 27.556 225 153 5 136 355 3 222 5.97e-27 106
Msa1129960 MtrunA17_Chr1g0160101 28.493 365 204 15 33 360 42 386 8.41e-27 109
Msa1129960 MtrunA17_Chr1g0159981 27.841 352 207 12 30 350 43 378 1.39e-26 109
Msa1129960 MtrunA17_Chr6g0450721 27.989 368 219 13 15 357 6 352 4.39e-26 107
Msa1129960 MtrunA17_Chr2g0283511 27.624 362 224 13 14 349 12 361 6.95e-26 107
Msa1129960 MtrunA17_Chr7g0275291 26.954 371 216 13 18 350 10 363 3.10e-25 105
Msa1129960 MtrunA17_Chr8g0352901 29.810 369 212 15 15 350 6 360 3.27e-25 105
Msa1129960 MtrunA17_Chr2g0283501 29.526 359 207 15 24 349 15 360 6.20e-25 104
Msa1129960 MtrunA17_Chr7g0226911 23.955 359 217 12 30 350 32 372 6.76e-24 101
Msa1129960 MtrunA17_Chr3g0104821 27.485 342 213 13 32 349 43 373 3.34e-23 99.8
Msa1129960 MtrunA17_Chr8g0347751 25.526 380 238 13 1 350 6 370 3.95e-23 99.4
Msa1129960 MtrunA17_Chr7g0226941 28.134 359 204 14 27 350 27 366 1.06e-22 98.2
Msa1129960 MtrunA17_Chr6g0450711 28.571 350 196 15 33 350 122 449 1.12e-22 99.0
Msa1129960 MtrunA17_Chr2g0283531 28.877 374 208 18 15 349 5 359 1.84e-22 97.4
Msa1129960 MtrunA17_Chr7g0273101 25.208 361 220 12 28 356 24 366 4.39e-22 96.3
Msa1129960 MtrunA17_Chr7g0226931 24.324 370 213 12 30 350 35 386 7.24e-22 95.9
Msa1129960 MtrunA17_Chr1g0198351 27.692 325 178 15 33 335 43 332 1.27e-21 94.7
Msa1129960 MtrunA17_Chr1g0191461 25.469 373 224 13 6 347 11 360 1.29e-21 95.1
Msa1129960 MtrunA17_Chr6g0469511 45.614 114 60 2 33 145 30 142 1.30e-21 89.7
Msa1129960 MtrunA17_Chr8g0370971 41.304 138 76 3 5 137 10 147 4.05e-21 89.4
Msa1129960 MtrunA17_Chr7g0266061 24.085 328 214 10 33 348 42 346 7.17e-21 92.4
Msa1129960 MtrunA17_Chr1g0178931 26.019 319 196 14 31 335 35 327 1.07e-20 92.0
Msa1129960 MtrunA17_Chr4g0027561 44.262 122 64 2 12 129 6 127 4.38e-20 85.9
Msa1129960 MtrunA17_Chr1g0178941 24.691 324 202 11 31 335 38 338 1.30e-19 89.0
Msa1129960 MtrunA17_Chr1g0198381 26.625 323 203 14 34 345 3 302 1.65e-19 88.2
Msa1129960 MtrunA17_Chr5g0440501 21.586 227 164 3 128 344 6 228 5.57e-19 85.5
Msa1129960 MtrunA17_Chr4g0057991 25.648 347 217 15 27 349 33 362 9.29e-19 86.7
Msa1129960 MtrunA17_Chr7g0229581 28.000 150 102 3 210 355 8 155 1.61e-16 76.3
Msa1129960 MtrunA17_Chr3g0112821 24.928 345 218 12 32 353 29 355 3.40e-16 79.0
Msa1129960 MtrunA17_Chr3g0093031 24.928 349 218 13 32 353 29 360 6.27e-16 78.2
Msa1129960 MtrunA17_Chr2g0317271 24.551 334 218 11 32 349 29 344 4.37e-15 75.9
Msa1129960 MtrunA17_Chr0c01g0489581 24.551 334 218 11 32 349 29 344 4.53e-15 75.9
Msa1129960 MtrunA17_Chr0c01g0489571 24.551 334 218 11 32 349 29 344 6.39e-15 75.1
Msa1129960 MtrunA17_Chr8g0339251 26.646 319 199 11 15 317 6 305 1.82e-14 73.6
Msa1129960 MtrunA17_Chr1g0198391 23.214 336 199 11 33 335 33 342 3.57e-14 73.2
Msa1129960 MtrunA17_Chr2g0317261 24.251 334 219 11 32 349 29 344 3.79e-14 72.8
Msa1129960 MtrunA17_Chr2g0321991 36.585 123 69 2 1 118 1 119 4.09e-13 65.9
Msa1129960 MtrunA17_Chr2g0301551 25.000 292 176 10 79 349 33 302 1.24e-12 68.2
Msa1129960 MtrunA17_Chr2g0301571 25.000 292 176 10 79 349 33 302 3.53e-12 66.6
Msa1129960 MtrunA17_Chr3g0104831 23.507 268 175 9 104 349 33 292 1.56e-11 64.7
Msa1129960 MtrunA17_Chr4g0018571 29.801 151 90 4 206 347 27 170 3.44e-11 61.6
Msa1129960 MtrunA17_Chr2g0308201 53.704 54 24 1 33 86 35 87 6.18e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129960 AT3G04290.1 76.487 353 83 0 15 367 11 363 0.0 575
Msa1129960 AT5G33370.1 71.271 362 104 0 8 369 5 366 0.0 556
Msa1129960 AT4G28780.1 71.681 339 94 2 31 368 29 366 9.64e-179 501
Msa1129960 AT5G18430.1 66.667 360 115 3 8 365 6 362 4.10e-175 491
Msa1129960 AT5G33370.2 71.329 286 82 0 8 293 5 290 5.87e-152 431
Msa1129960 AT2G23540.1 39.053 338 197 7 33 362 48 384 5.37e-81 253
Msa1129960 AT1G29660.1 39.024 369 216 7 1 365 1 364 1.04e-79 249
Msa1129960 AT3G50400.1 41.369 336 187 9 33 359 34 368 1.42e-79 249
Msa1129960 AT5G37690.1 40.895 313 181 4 35 346 29 338 3.32e-77 242
Msa1129960 AT1G29670.1 38.764 356 211 5 14 365 11 363 6.73e-76 239
Msa1129960 AT1G29670.2 38.764 356 211 5 14 365 79 431 4.84e-75 239
Msa1129960 AT1G71250.1 35.097 359 231 2 8 365 16 373 7.63e-75 236
Msa1129960 AT5G45670.1 37.466 363 220 6 7 365 3 362 1.47e-73 233
Msa1129960 AT5G15720.1 37.427 342 208 4 28 365 25 364 3.41e-73 232
Msa1129960 AT2G42990.1 35.244 349 220 5 10 355 5 350 6.61e-73 231
Msa1129960 AT4G18970.1 39.412 340 197 6 31 365 26 361 1.11e-72 231
Msa1129960 AT4G18970.2 39.412 340 197 6 31 365 26 361 6.18e-72 230
Msa1129960 AT5G08460.1 38.462 338 202 4 33 365 49 385 6.73e-72 229
Msa1129960 AT5G37690.2 39.617 313 177 5 35 346 29 330 1.49e-71 227
Msa1129960 AT1G33811.1 36.264 364 220 9 8 362 7 367 2.80e-71 227
Msa1129960 AT1G71691.2 37.910 335 202 6 33 366 55 384 7.89e-71 226
Msa1129960 AT4G26790.1 35.258 329 205 6 24 347 18 343 1.66e-69 222
Msa1129960 AT4G26790.2 35.258 329 205 6 24 347 18 343 1.66e-69 222
Msa1129960 AT1G75890.2 36.196 326 197 7 27 346 41 361 7.29e-68 218
Msa1129960 AT1G75880.1 33.994 353 221 6 5 347 17 367 9.05e-68 218
Msa1129960 AT1G75890.3 36.196 326 197 7 27 346 70 390 1.23e-67 218
Msa1129960 AT1G75880.2 33.994 353 220 7 5 347 17 366 2.83e-67 217
Msa1129960 AT2G04570.1 35.849 318 198 5 33 347 28 342 6.52e-67 215
Msa1129960 AT5G42170.1 35.802 324 199 5 27 347 44 361 1.93e-66 214
Msa1129960 AT5G45950.1 36.449 321 196 7 33 352 40 353 1.43e-65 212
Msa1129960 AT1G74460.1 36.792 318 193 5 35 346 25 340 3.65e-65 211
Msa1129960 AT1G75890.1 34.513 339 200 7 27 347 41 375 7.47e-65 211
Msa1129960 AT2G30220.1 33.138 341 214 7 9 342 11 344 2.55e-64 209
Msa1129960 AT5G03820.1 36.182 351 202 8 14 348 6 350 3.80e-64 208
Msa1129960 AT5G03820.2 36.182 351 202 8 14 348 34 378 1.50e-63 207
Msa1129960 AT1G06990.1 34.194 310 197 4 33 338 37 343 4.69e-63 206
Msa1129960 AT2G30310.1 32.344 337 215 7 9 338 11 341 5.30e-63 205
Msa1129960 AT5G03810.1 37.383 321 192 6 33 348 30 346 7.93e-63 205
Msa1129960 AT1G58430.1 34.740 308 195 5 33 336 35 340 3.32e-62 203
Msa1129960 AT3G16370.1 34.821 336 203 8 18 347 20 345 1.32e-61 202
Msa1129960 AT2G31540.1 34.700 317 195 6 33 342 35 346 1.51e-61 202
Msa1129960 AT5G41890.1 33.140 344 204 9 35 359 33 369 1.75e-61 202
Msa1129960 AT2G24560.1 33.441 311 195 6 33 336 34 339 2.24e-61 201
Msa1129960 AT1G20130.2 34.925 335 198 7 33 355 184 510 3.89e-60 202
Msa1129960 AT1G20130.1 34.925 335 198 7 33 355 204 530 4.90e-60 202
Msa1129960 AT1G75900.1 33.237 346 212 8 13 347 19 356 1.08e-59 197
Msa1129960 AT1G20120.1 33.540 322 200 7 33 347 78 392 1.91e-59 197
Msa1129960 AT2G19010.1 35.312 337 199 8 12 344 8 329 2.12e-59 196
Msa1129960 AT5G45960.1 35.032 314 192 6 33 338 47 356 3.53e-59 196
Msa1129960 AT2G19010.2 35.312 337 199 8 12 344 38 359 6.43e-59 195
Msa1129960 AT4G10950.2 33.634 333 218 3 33 363 71 402 1.65e-58 195
Msa1129960 AT5G22810.1 34.091 352 216 9 5 348 9 352 5.34e-58 192
Msa1129960 AT1G20132.1 35.435 333 198 8 33 358 61 383 7.43e-58 193
Msa1129960 AT3G53100.1 35.737 319 197 6 33 347 29 343 1.19e-57 191
Msa1129960 AT5G55050.1 33.235 340 214 7 33 363 39 374 1.84e-57 191
Msa1129960 AT2G19060.1 34.582 347 201 9 14 349 5 336 7.53e-57 189
Msa1129960 AT2G40250.1 32.209 326 209 4 27 344 30 351 5.19e-56 187
Msa1129960 AT5G63170.1 35.599 309 181 7 33 338 28 321 1.19e-55 186
Msa1129960 AT4G10950.1 33.533 334 213 5 33 363 71 398 1.75e-55 187
Msa1129960 AT2G19050.1 35.016 317 182 7 34 344 32 330 4.21e-55 184
Msa1129960 AT1G59406.1 34.169 319 199 6 33 347 30 341 6.45e-55 184
Msa1129960 AT1G59030.1 34.169 319 199 6 33 347 30 341 6.45e-55 184
Msa1129960 AT1G58725.1 34.169 319 199 6 33 347 30 341 6.45e-55 184
Msa1129960 AT4G16230.1 41.564 243 135 5 13 250 8 248 8.43e-53 176
Msa1129960 AT3G14820.1 32.317 328 208 7 33 355 32 350 9.58e-53 179
Msa1129960 AT5G15720.3 34.201 269 173 3 95 359 59 327 4.04e-52 176
Msa1129960 AT1G58520.3 33.542 319 194 7 33 347 30 334 1.11e-51 176
Msa1129960 AT1G58525.1 33.542 319 194 7 33 347 30 334 1.11e-51 176
Msa1129960 AT5G40990.1 31.267 371 232 8 8 366 15 374 1.24e-51 176
Msa1129960 AT4G30140.1 34.441 331 199 8 34 363 34 347 1.30e-51 176
Msa1129960 AT1G73610.1 34.591 318 189 7 33 347 35 336 1.55e-51 175
Msa1129960 AT3G43570.1 30.904 343 201 6 7 347 4 312 1.64e-51 174
Msa1129960 AT1G71691.1 34.035 285 183 5 83 366 3 283 4.07e-51 172
Msa1129960 AT5G15720.2 37.226 274 166 4 28 297 25 296 1.49e-50 172
Msa1129960 AT1G20135.1 31.532 333 207 8 18 343 9 327 2.30e-50 172
Msa1129960 AT1G71120.1 34.925 335 197 13 33 359 31 352 5.37e-49 169
Msa1129960 AT2G24560.2 33.209 268 167 6 33 293 34 296 1.47e-48 167
Msa1129960 AT1G71691.3 38.168 262 156 6 33 293 55 311 3.76e-47 163
Msa1129960 AT1G53940.2 30.966 352 211 11 33 366 39 376 1.34e-45 160
Msa1129960 AT1G53990.1 29.491 373 227 10 8 365 13 364 1.48e-45 160
Msa1129960 AT1G23500.1 30.675 326 206 7 28 349 30 339 5.80e-45 158
Msa1129960 AT2G19050.2 36.719 256 148 5 34 283 32 279 6.89e-45 156
Msa1129960 AT3G14225.2 30.259 347 218 8 33 365 37 373 4.60e-44 156
Msa1129960 AT3G14225.1 31.232 349 216 10 33 365 37 377 6.46e-44 156
Msa1129960 AT1G75910.1 31.056 322 201 8 33 347 28 335 3.16e-41 148
Msa1129960 AT1G75930.1 32.177 317 193 9 33 342 29 330 6.05e-40 145
Msa1129960 AT3G43550.1 33.212 274 168 6 23 293 25 286 7.76e-40 143
Msa1129960 AT2G03980.2 31.013 316 202 7 33 341 43 349 1.12e-39 144
Msa1129960 AT2G03980.3 31.013 316 202 7 33 341 43 349 1.12e-39 144
Msa1129960 AT2G03980.1 31.013 316 202 7 33 341 43 349 1.12e-39 144
Msa1129960 AT2G03980.4 31.013 316 202 7 33 341 43 349 1.12e-39 144
Msa1129960 AT1G53920.1 30.449 312 195 9 33 333 48 348 3.46e-39 144
Msa1129960 AT1G75920.2 28.249 354 220 10 9 347 1 335 3.13e-38 140
Msa1129960 AT1G75920.1 27.139 339 206 9 33 347 24 345 3.03e-34 130
Msa1129960 AT2G31550.1 30.806 211 137 3 140 345 2 208 1.07e-33 125
Msa1129960 AT1G54030.1 29.586 338 211 11 31 365 50 363 6.16e-33 127
Msa1129960 AT3G62280.1 27.941 340 207 13 37 358 40 359 1.50e-30 120
Msa1129960 AT1G56670.1 28.280 343 204 12 35 356 42 363 1.59e-30 120
Msa1129960 AT1G09390.1 28.571 329 205 11 35 347 39 353 1.32e-29 117
Msa1129960 AT1G75920.3 26.074 349 203 9 9 347 1 304 2.15e-29 115
Msa1129960 AT1G53940.1 30.797 276 165 10 33 296 39 300 1.71e-28 113
Msa1129960 AT5G14450.1 29.301 372 213 16 12 349 18 373 2.50e-28 114
Msa1129960 AT1G75920.4 26.174 298 194 8 59 347 27 307 1.72e-27 110
Msa1129960 AT3G14220.1 26.790 377 236 16 1 363 1 351 3.48e-27 110
Msa1129960 AT2G04020.1 32.895 228 134 6 33 250 43 261 7.18e-27 107
Msa1129960 AT5G45910.1 29.692 357 201 16 27 349 24 364 4.86e-26 107
Msa1129960 AT4G01130.1 25.916 382 234 12 5 353 6 371 6.56e-26 107
Msa1129960 AT3G09930.2 28.135 327 192 13 34 342 40 341 1.80e-25 105
Msa1129960 AT3G09930.1 28.135 327 192 13 34 342 40 341 1.80e-25 105
Msa1129960 AT2G04020.2 32.850 207 126 4 33 235 43 240 4.08e-25 104
Msa1129960 AT3G05180.1 27.374 358 215 13 33 359 36 379 9.29e-24 101
Msa1129960 AT3G27950.1 27.027 370 223 13 11 350 6 358 1.03e-23 101
Msa1129960 AT1G67830.1 27.451 357 213 12 28 352 25 367 2.09e-23 100
Msa1129960 AT3G26430.1 26.913 379 224 14 8 350 5 366 2.14e-23 100
Msa1129960 AT1G54020.2 23.669 338 234 8 31 364 31 348 2.39e-23 100
Msa1129960 AT1G54790.3 24.742 388 233 15 4 356 6 369 3.64e-23 99.8
Msa1129960 AT4G16233.1 34.959 123 79 1 241 362 5 127 4.46e-23 94.0
Msa1129960 AT1G54000.1 24.737 380 246 14 1 364 1 356 1.73e-22 98.2
Msa1129960 AT5G03610.1 26.398 322 201 12 35 342 45 344 5.01e-22 96.3
Msa1129960 AT4G16220.1 46.957 115 56 3 13 124 8 120 1.99e-21 92.4
Msa1129960 AT1G28670.1 28.219 365 221 15 15 349 12 365 4.70e-21 94.0
Msa1129960 AT1G54010.1 24.074 378 250 13 1 364 2 356 5.53e-21 93.6
Msa1129960 AT3G14210.1 26.257 358 214 15 26 364 32 358 1.06e-20 92.8
Msa1129960 AT1G54790.1 24.479 384 227 15 8 356 13 368 1.07e-20 92.8
Msa1129960 AT1G28650.1 28.378 370 223 16 9 349 10 366 5.36e-20 90.9
Msa1129960 AT1G28660.2 28.726 369 212 17 15 349 12 363 1.03e-19 90.1
Msa1129960 AT1G54030.2 29.167 240 147 7 31 268 50 268 1.08e-19 89.0
Msa1129960 AT1G28660.1 28.726 369 213 17 15 349 12 364 1.22e-19 89.7
Msa1129960 AT4G01130.3 25.597 293 177 9 94 353 1 285 2.46e-19 87.8
Msa1129960 AT3G48460.1 25.613 367 226 16 13 350 16 364 3.95e-19 88.2
Msa1129960 AT1G28600.1 26.702 382 224 18 1 349 1 359 8.03e-19 87.4
Msa1129960 AT1G56670.2 27.636 275 164 9 35 293 42 297 1.44e-18 85.5
Msa1129960 AT1G28570.1 27.988 343 210 17 32 349 33 363 1.74e-18 86.7
Msa1129960 AT1G28640.1 26.503 366 227 15 15 350 12 365 3.88e-18 85.5
Msa1129960 AT3G62280.2 27.037 270 166 10 37 293 40 291 6.08e-18 83.6
Msa1129960 AT4G01130.2 24.919 309 196 10 5 293 6 298 2.51e-16 79.7
Msa1129960 AT1G31550.1 28.212 358 207 18 23 349 23 361 6.37e-16 79.0
Msa1129960 AT1G54790.2 22.927 410 227 16 8 356 13 394 9.62e-16 78.6
Msa1129960 AT1G54020.1 21.324 272 194 5 95 364 9 262 2.11e-14 73.2
Msa1129960 AT1G54020.5 21.324 272 194 5 95 364 9 262 2.11e-14 73.2
Msa1129960 AT1G54020.3 21.324 272 194 5 95 364 9 262 2.11e-14 73.2
Msa1129960 AT1G54020.4 21.429 210 160 2 157 364 7 213 7.33e-14 70.9
Msa1129960 AT3G14210.2 23.832 214 149 5 160 364 22 230 3.17e-13 69.7
Msa1129960 AT1G28580.2 28.244 262 159 12 109 349 32 285 8.15e-12 65.9
Msa1129960 AT2G36325.1 25.228 329 204 11 30 342 44 346 1.61e-11 65.5

Find 76 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAGAGATGCATATGTATTT+TGG 0.124575 7_3:+82025555 Msa1129960:CDS
CCCTCAACTCGTTGACTTAT+TGG 0.154118 7_3:+82024388 Msa1129960:CDS
GGTCAACTCAACTCTGAAAT+TGG 0.219314 7_3:+82024410 Msa1129960:CDS
TCTCAGTACCATTATGCTTT+TGG 0.235311 7_3:+82025664 Msa1129960:CDS
AAACTACTCTTTGGTTGTTT+TGG 0.238462 7_3:-82021951 None:intergenic
CGTGCTGATTCTTACCCTTA+TGG 0.273687 7_3:+82022108 Msa1129960:CDS
CATAATCTGGAAGTCTAAAT+TGG 0.285550 7_3:-82022765 None:intergenic
CCTCAACTCGTTGACTTATT+GGG 0.305859 7_3:+82024389 Msa1129960:CDS
AAATGCATTTGCAATGAATA+TGG 0.321846 7_3:+82024454 Msa1129960:CDS
ACATGTATACCGTATGCTTC+TGG 0.325185 7_3:-82024491 None:intergenic
AATACATATGCATCTCTGTT+TGG 0.328061 7_3:-82025551 None:intergenic
ATTGGGAGCAAGAAGAGTTT+TGG 0.351874 7_3:+82024262 Msa1129960:CDS
ATTGCAGAGGCTTTATGAAT+TGG 0.354178 7_3:+82024244 Msa1129960:intron
CAAAGAGTGAGTGCACTAAT+AGG 0.363350 7_3:+82022634 Msa1129960:CDS
ATACATATGCATCTCTGTTT+GGG 0.385839 7_3:-82025550 None:intergenic
TTGAGTTCAGGACTCAAATA+TGG 0.392732 7_3:-82022354 None:intergenic
ATGAGGTACACAACATAATC+TGG 0.397543 7_3:-82022778 None:intergenic
CTATGCTGAGCTAATTCTGC+TGG 0.398501 7_3:-82024314 None:intergenic
AGTGCCTCTCCATTGAGTTC+AGG 0.403084 7_3:-82022366 None:intergenic
TTGCAGAGGCTTTATGAATT+GGG 0.404961 7_3:+82024245 Msa1129960:intron
CATTGGATGCATGTATTCAC+TGG 0.431022 7_3:-82025639 None:intergenic
AGAAGAGGAAACTGTGAGAT+TGG 0.431623 7_3:+82022657 Msa1129960:CDS
CGAATGTTATGCAGAATTGC+AGG 0.433498 7_3:+82024346 Msa1129960:CDS
GCACTGTACCTGATGACTTT+AGG 0.442082 7_3:+82022688 Msa1129960:CDS
CCCAATAAGTCAACGAGTTG+AGG 0.445166 7_3:-82024389 None:intergenic
AATCTGTTTGCTCTGTCGCT+TGG 0.447145 7_3:-82025590 None:intergenic
TTAGCTCAGCATAGCAGAAA+TGG 0.451073 7_3:+82024323 Msa1129960:CDS
GCAATGAATATGGATTTCAT+TGG 0.459437 7_3:+82024464 Msa1129960:CDS
ACACAGTCCAATCCCATTGT+AGG 0.459957 7_3:-82025507 None:intergenic
TCTTGAATCCAAAAGCATAA+TGG 0.465559 7_3:-82025672 None:intergenic
GAGTTGAGGGTTGAACAAAT+TGG 0.467807 7_3:-82024375 None:intergenic
GTCAGGCATGTTGAGGCCAT+TGG 0.468967 7_3:-82022169 None:intergenic
TATCCAACTCACCGTGCCAC+TGG 0.470082 7_3:+82022138 Msa1129960:CDS
GAATGAATTATATACTGATA+AGG 0.472379 7_3:-82022191 None:intergenic
GTTGGATAATCAATGCCATA+AGG 0.480582 7_3:-82022123 None:intergenic
TTTGGGCATATGTTGGATGC+TGG 0.481525 7_3:-82025533 None:intergenic
CAAACAGATTGATTGTAGAA+AGG 0.485447 7_3:+82025603 Msa1129960:CDS
ATTGTAGAAAGGTTCATGAT+AGG 0.488971 7_3:+82025614 Msa1129960:CDS
CGTCCAGTGGCACGGTGAGT+TGG 0.492569 7_3:-82022141 None:intergenic
GTGACTGGTACAGGACCGTT+AGG 0.494620 7_3:+82024284 Msa1129960:CDS
CAAGGACCCTACAATGGGAT+TGG 0.500835 7_3:+82025500 Msa1129960:CDS
GCCACTGGACGCTTCTCCAA+TGG 0.501312 7_3:+82022153 Msa1129960:CDS
CATTTCCACCTAAAGTCATC+AGG 0.504332 7_3:-82022696 None:intergenic
ATGCACGTAGGTGAGCGAAT+TGG 0.505460 7_3:+82022315 Msa1129960:intron
GAGTGCACTAATAGGAGAAG+AGG 0.505879 7_3:+82022642 Msa1129960:CDS
ATAATGGTACTGAGATTCAT+TGG 0.506205 7_3:-82025656 None:intergenic
TGTTTGCTCTGTCGCTTGGA+TGG 0.510291 7_3:-82025586 None:intergenic
CATTGTTGTTCCACAAGTTG+AGG 0.511403 7_3:+82022014 Msa1129960:CDS
CCAATAAGTCAACGAGTTGA+GGG 0.518028 7_3:-82024388 None:intergenic
TGGCGTGATCTTGCAGAGAA+AGG 0.524355 7_3:-82022745 None:intergenic
AATGCTCGAGCCTCAACTTG+TGG 0.527484 7_3:-82022024 None:intergenic
ATCTCTGTTTGGGCATATGT+TGG 0.534176 7_3:-82025540 None:intergenic
GTGGTCAAGGACCCTACAAT+GGG 0.534667 7_3:+82025495 Msa1129960:CDS
AATGGAGAGGCACTACTAGT+TGG 0.545374 7_3:+82022375 Msa1129960:CDS
AGGACTCAAATATGGTAATG+TGG 0.548446 7_3:-82022346 None:intergenic
AAAGTTGCATGTTGTGGTCA+AGG 0.550304 7_3:+82025482 Msa1129960:CDS
AATTATATACTGATAAGGTC+AGG 0.562951 7_3:-82022186 None:intergenic
TTGGATAATCAATGCCATAA+GGG 0.564020 7_3:-82022122 None:intergenic
ATTGGAATTCTCAATGACAC+TGG 0.568045 7_3:+82022420 Msa1129960:CDS
CACAGTCCAATCCCATTGTA+GGG 0.572094 7_3:-82025506 None:intergenic
GGACTCAAATATGGTAATGT+GGG 0.574834 7_3:-82022345 None:intergenic
ATTGGTAATCCAGAAGCATA+CGG 0.577661 7_3:+82024482 Msa1129960:CDS
TGGAGAAGCGTCCAGTGGCA+CGG 0.594398 7_3:-82022149 None:intergenic
CTGTACCTGATGACTTTAGG+TGG 0.605508 7_3:+82022691 Msa1129960:CDS
TGTGGTCAAGGACCCTACAA+TGG 0.609352 7_3:+82025494 Msa1129960:CDS
TGATAAGGTCAGGCATGTTG+AGG 0.615699 7_3:-82022176 None:intergenic
TATTTGAGTCCTGAACTCAA+TGG 0.616208 7_3:+82022357 Msa1129960:CDS
TATGCTGAGCTAATTCTGCT+GGG 0.624822 7_3:-82024313 None:intergenic
GCCATTGGAGAAGCGTCCAG+TGG 0.628693 7_3:-82022154 None:intergenic
ACATCAAAAGTTGCATGTTG+TGG 0.631772 7_3:+82025476 Msa1129960:CDS
CGAGTATCGTAAAATTCTTG+CGG 0.642044 7_3:+82022804 Msa1129960:CDS
GTAAGAATCAGCACGAGCAG+TGG 0.646465 7_3:-82022100 None:intergenic
TCTGCTGGGACACAACCTAA+CGG 0.648578 7_3:-82024299 None:intergenic
GGTGATTCACTTGTTGACAA+TGG 0.651434 7_3:+82022057 Msa1129960:CDS
GAGTCCTGAACTCAATGGAG+AGG 0.663419 7_3:+82022362 Msa1129960:CDS
TTAACATAATCAGAATCACA+AGG 0.728343 7_3:+82022584 Msa1129960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTACCAATTAAAAAAAAAA+TGG - chr7_3:82023044-82023063 None:intergenic 10.0%
!! TCATATAAAAAATATATCAA+TGG - chr7_3:82023382-82023401 None:intergenic 10.0%
!! ACAAATTATATATAAAAAAG+TGG + chr7_3:82024080-82024099 Msa1129960:intron 10.0%
!! AATGAAAATACTTAAAATTA+AGG - chr7_3:82024977-82024996 None:intergenic 10.0%
!!! ATTTCAATTTTCAAATTTAT+GGG - chr7_3:82025425-82025444 None:intergenic 10.0%
!!! TATATATTTTCCTTAATGTA+TGG - chr7_3:82022497-82022516 None:intergenic 15.0%
!!! AAAGCCATTTTTTTTTTAAT+TGG + chr7_3:82023037-82023056 Msa1129960:intron 15.0%
!! AATAACTGTTAACATTATAT+TGG + chr7_3:82023077-82023096 Msa1129960:intron 15.0%
!! ATAACTGTTAACATTATATT+GGG + chr7_3:82023078-82023097 Msa1129960:intron 15.0%
!! TCATCAAATAAAAATGAAAA+TGG - chr7_3:82023478-82023497 None:intergenic 15.0%
!!! GACTAATAATGTTTTATTTT+TGG + chr7_3:82023496-82023515 Msa1129960:intron 15.0%
!!! TTCGATTTATTCTATTTTTT+TGG + chr7_3:82023643-82023662 Msa1129960:intron 15.0%
!! GAAAAAAATAATTAACTAGT+GGG - chr7_3:82023866-82023885 None:intergenic 15.0%
!! AGAAAAAAATAATTAACTAG+TGG - chr7_3:82023867-82023886 None:intergenic 15.0%
!! AACTAAATGAAAAATTAAAG+TGG + chr7_3:82024742-82024761 Msa1129960:intron 15.0%
!! ACTAAATGAAAAATTAAAGT+GGG + chr7_3:82024743-82024762 Msa1129960:intron 15.0%
!!! TTTCAATTTTCAAATTTATG+GGG - chr7_3:82025424-82025443 None:intergenic 15.0%
!!! GATTTCAATTTTCAAATTTA+TGG - chr7_3:82025426-82025445 None:intergenic 15.0%
!! ACATTATCATATATATATGT+AGG + chr7_3:82025446-82025465 Msa1129960:intron 15.0%
!! GAATGAATTATATACTGATA+AGG - chr7_3:82022194-82022213 None:intergenic 20.0%
!! AATAATTAATTAATGCACGT+AGG + chr7_3:82022303-82022322 Msa1129960:intron 20.0%
!!! TGAAAGCATAATATATTTGA+AGG - chr7_3:82022464-82022483 None:intergenic 20.0%
!!! TATTATGCTTTCAATTTTTG+TGG + chr7_3:82022471-82022490 Msa1129960:intron 20.0%
!!! TGTGAATATACATTTGTTTT+TGG + chr7_3:82022557-82022576 Msa1129960:intron 20.0%
!! TAAAAATAATAGCAACAGAT+CGG - chr7_3:82022842-82022861 None:intergenic 20.0%
!!! TCCCATTAATCAATATTTTT+GGG + chr7_3:82023424-82023443 Msa1129960:intron 20.0%
!! ATAAAAATGAAAATGGCTTA+AGG - chr7_3:82023471-82023490 None:intergenic 20.0%
!! TCAACTAGATCTATATAATA+TGG + chr7_3:82023519-82023538 Msa1129960:intron 20.0%
!! CAACTAGATCTATATAATAT+GGG + chr7_3:82023520-82023539 Msa1129960:intron 20.0%
!!! GTATATCTACATTTTTTGTA+AGG - chr7_3:82023844-82023863 None:intergenic 20.0%
!! TGTAAAGACATTTGATATAT+TGG - chr7_3:82023965-82023984 None:intergenic 20.0%
!! TATCAGAAGAGTTATATTTA+CGG + chr7_3:82023990-82024009 Msa1129960:intron 20.0%
!!! CACACAATAATATTTTTGAA+AGG + chr7_3:82024016-82024035 Msa1129960:intron 20.0%
!! AATAAAAAAAGTGATGTTGA+AGG - chr7_3:82024517-82024536 None:intergenic 20.0%
!!! ATTTCTAATATGCGTATTTT+TGG + chr7_3:82024549-82024568 Msa1129960:intron 20.0%
!!! TTTCTAATATGCGTATTTTT+GGG + chr7_3:82024550-82024569 Msa1129960:intron 20.0%
!! TTAAAATTAAGGAATACTAG+TGG - chr7_3:82024689-82024708 None:intergenic 20.0%
!!! CTAGTATTCCTTAATTTTAA+CGG + chr7_3:82024689-82024708 Msa1129960:intron 20.0%
!!! TAGTATTCCTTAATTTTAAC+GGG + chr7_3:82024690-82024709 Msa1129960:intron 20.0%
!!! TCAGAATTTATTTAAGACTT+TGG + chr7_3:82025352-82025371 Msa1129960:intron 20.0%
! AAGAAACAAAAACTACTCTT+TGG - chr7_3:82021963-82021982 None:intergenic 25.0%
! AATTATATACTGATAAGGTC+AGG - chr7_3:82022189-82022208 None:intergenic 25.0%
! TTAACATAATCAGAATCACA+AGG + chr7_3:82022584-82022603 Msa1129960:CDS 25.0%
! AACTTGTAACAAAATAGATC+TGG - chr7_3:82023115-82023134 None:intergenic 25.0%
!! TTTTTGCTTTCTGTACTATT+TGG + chr7_3:82023318-82023337 Msa1129960:intron 25.0%
!! GTCCCATTAATCAATATTTT+TGG + chr7_3:82023423-82023442 Msa1129960:intron 25.0%
!! GCCCAAAAATATTGATTAAT+GGG - chr7_3:82023428-82023447 None:intergenic 25.0%
! ATTAACGTGTGTGTATATAT+TGG - chr7_3:82023589-82023608 None:intergenic 25.0%
! ATCAGAAGAGTTATATTTAC+GGG + chr7_3:82023991-82024010 Msa1129960:intron 25.0%
! TGAGCAAAATTAATGTGTTA+TGG + chr7_3:82024127-82024146 Msa1129960:intron 25.0%
! GAGCAAAATTAATGTGTTAT+GGG + chr7_3:82024128-82024147 Msa1129960:intron 25.0%
! AGCAAAATTAATGTGTTATG+GGG + chr7_3:82024129-82024148 Msa1129960:intron 25.0%
! AAATGCATTTGCAATGAATA+TGG + chr7_3:82024454-82024473 Msa1129960:CDS 25.0%
!! TACAAATATAACAAGTGTTG+TGG + chr7_3:82024610-82024629 Msa1129960:intron 25.0%
!! ACAAATATAACAAGTGTTGT+GGG + chr7_3:82024611-82024630 Msa1129960:intron 25.0%
! AAATTAAAGTGGGTGAAATT+TGG + chr7_3:82024753-82024772 Msa1129960:intron 25.0%
! GTAGATGGGAAAATTAAATA+TGG - chr7_3:82024794-82024813 None:intergenic 25.0%
! ATATCATCATGAGTATAAAG+TGG + chr7_3:82024935-82024954 Msa1129960:intron 25.0%
! ACTTTAACTGTTTAACATGT+CGG + chr7_3:82025115-82025134 Msa1129960:intron 25.0%
!! GAGATATAACTTAGGTTTTA+CGG + chr7_3:82025142-82025161 Msa1129960:intron 25.0%
! AACTCATAGATATATTATGC+AGG - chr7_3:82025308-82025327 None:intergenic 25.0%
! TGCATAATATATCTATGAGT+TGG + chr7_3:82025307-82025326 Msa1129960:intron 25.0%
!!! AATATATCTATGAGTTGGTT+TGG + chr7_3:82025312-82025331 Msa1129960:intron 25.0%
! AAACTACTCTTTGGTTGTTT+TGG - chr7_3:82021954-82021973 None:intergenic 30.0%
TTGGATAATCAATGCCATAA+GGG - chr7_3:82022125-82022144 None:intergenic 30.0%
! ATTTTTGTGGCCATACATTA+AGG + chr7_3:82022484-82022503 Msa1129960:intron 30.0%
CATAATCTGGAAGTCTAAAT+TGG - chr7_3:82022768-82022787 None:intergenic 30.0%
TGTGAATCATCATCCAAAAA+AGG + chr7_3:82022945-82022964 Msa1129960:intron 30.0%
! TTTTCCTTCACTTCCTTTTT+TGG - chr7_3:82022961-82022980 None:intergenic 30.0%
TAGAGTCTTCGTAGATAATT+GGG + chr7_3:82023263-82023282 Msa1129960:intron 30.0%
!!! ATTGGGTCTCTTCAATTTTT+TGG + chr7_3:82023280-82023299 Msa1129960:intron 30.0%
! CGCCCAAAAATATTGATTAA+TGG - chr7_3:82023429-82023448 None:intergenic 30.0%
AAAATGGCTTAAGGAATACA+AGG - chr7_3:82023462-82023481 None:intergenic 30.0%
CTTGCATAATAAGTAAATCG+AGG + chr7_3:82023809-82023828 Msa1129960:intron 30.0%
GTACTATCATAAAAACAGCA+GGG - chr7_3:82024062-82024081 None:intergenic 30.0%
TGTACTATCATAAAAACAGC+AGG - chr7_3:82024063-82024082 None:intergenic 30.0%
GCAATGAATATGGATTTCAT+TGG + chr7_3:82024464-82024483 Msa1129960:CDS 30.0%
AAAGCTACCCGTTAAAATTA+AGG - chr7_3:82024700-82024719 None:intergenic 30.0%
GGGTGAAATTTGGAAAATAT+TGG + chr7_3:82024763-82024782 Msa1129960:intron 30.0%
CTCATGATATGTATGTAGAT+GGG - chr7_3:82024808-82024827 None:intergenic 30.0%
ACTCATGATATGTATGTAGA+TGG - chr7_3:82024809-82024828 None:intergenic 30.0%
TACATATCATGAGTATAGAG+TGG + chr7_3:82024815-82024834 Msa1129960:intron 30.0%
ACTCATGATGATATAAAGTG+TGG - chr7_3:82024929-82024948 None:intergenic 30.0%
! TCGGTATTGAGATATAACTT+AGG + chr7_3:82025134-82025153 Msa1129960:intron 30.0%
AATAGCGTATATAATGTGAG+AGG - chr7_3:82025395-82025414 None:intergenic 30.0%
ATACATATGCATCTCTGTTT+GGG - chr7_3:82025553-82025572 None:intergenic 30.0%
AATACATATGCATCTCTGTT+TGG - chr7_3:82025554-82025573 None:intergenic 30.0%
! ACAGAGATGCATATGTATTT+TGG + chr7_3:82025555-82025574 Msa1129960:CDS 30.0%
! CAGAGATGCATATGTATTTT+GGG + chr7_3:82025556-82025575 Msa1129960:CDS 30.0%
CAAACAGATTGATTGTAGAA+AGG + chr7_3:82025603-82025622 Msa1129960:CDS 30.0%
ATTGTAGAAAGGTTCATGAT+AGG + chr7_3:82025614-82025633 Msa1129960:CDS 30.0%
! ATAATGGTACTGAGATTCAT+TGG - chr7_3:82025659-82025678 None:intergenic 30.0%
! TCTTGAATCCAAAAGCATAA+TGG - chr7_3:82025675-82025694 None:intergenic 30.0%
!!! GCTCGAGCATTTTTTGTTTT+TGG + chr7_3:82022036-82022055 Msa1129960:CDS 35.0%
GTTGGATAATCAATGCCATA+AGG - chr7_3:82022126-82022145 None:intergenic 35.0%
! GGACTCAAATATGGTAATGT+GGG - chr7_3:82022348-82022367 None:intergenic 35.0%
! AGGACTCAAATATGGTAATG+TGG - chr7_3:82022349-82022368 None:intergenic 35.0%
TTGAGTTCAGGACTCAAATA+TGG - chr7_3:82022357-82022376 None:intergenic 35.0%
TATTTGAGTCCTGAACTCAA+TGG + chr7_3:82022357-82022376 Msa1129960:CDS 35.0%
! AATTTTGCTTCTGCTGGAAT+TGG + chr7_3:82022402-82022421 Msa1129960:CDS 35.0%
ATTGGAATTCTCAATGACAC+TGG + chr7_3:82022420-82022439 Msa1129960:CDS 35.0%
TCCTTAGTTTAGTAGACAGA+AGG - chr7_3:82022522-82022541 None:intergenic 35.0%
ATGAGGTACACAACATAATC+TGG - chr7_3:82022781-82022800 None:intergenic 35.0%
! TTTTACGATACTCGGAAATG+AGG - chr7_3:82022798-82022817 None:intergenic 35.0%
! CGCAAGAATTTTACGATACT+CGG - chr7_3:82022806-82022825 None:intergenic 35.0%
! CGAGTATCGTAAAATTCTTG+CGG + chr7_3:82022804-82022823 Msa1129960:CDS 35.0%
TGATGATTCACAATCATTGC+AGG - chr7_3:82022937-82022956 None:intergenic 35.0%
TCATCCAAAAAAGGAAGTGA+AGG + chr7_3:82022954-82022973 Msa1129960:intron 35.0%
CTAGAGTCTTCGTAGATAAT+TGG + chr7_3:82023262-82023281 Msa1129960:intron 35.0%
CGAGTTAAACAAAGTGAACT+TGG - chr7_3:82023728-82023747 None:intergenic 35.0%
TAAGTAAATCGAGGACAACT+AGG + chr7_3:82023818-82023837 Msa1129960:intron 35.0%
! ATTGCAGAGGCTTTATGAAT+TGG + chr7_3:82024244-82024263 Msa1129960:intron 35.0%
! TTGCAGAGGCTTTATGAATT+GGG + chr7_3:82024245-82024264 Msa1129960:intron 35.0%
! ATTGGTAATCCAGAAGCATA+CGG + chr7_3:82024482-82024501 Msa1129960:CDS 35.0%
!! AAGACCGATTTGATATGTTG+TGG - chr7_3:82024649-82024668 None:intergenic 35.0%
! CTTCATTTGGATTTGGGATT+GGG - chr7_3:82024860-82024879 None:intergenic 35.0%
TTATACCGAAGACTGATGAA+AGG + chr7_3:82025023-82025042 Msa1129960:intron 35.0%
TATACCGAAGACTGATGAAA+GGG + chr7_3:82025024-82025043 Msa1129960:intron 35.0%
!! TTGGTTTGGTACTTGGTATT+TGG + chr7_3:82025326-82025345 Msa1129960:intron 35.0%
! ACAACATGCAACTTTTGATG+TGG - chr7_3:82025477-82025496 None:intergenic 35.0%
ACATCAAAAGTTGCATGTTG+TGG + chr7_3:82025476-82025495 Msa1129960:CDS 35.0%
! TCTCAGTACCATTATGCTTT+TGG + chr7_3:82025664-82025683 Msa1129960:CDS 35.0%
! CATTGTTGTTCCACAAGTTG+AGG + chr7_3:82022014-82022033 Msa1129960:CDS 40.0%
! GGTGATTCACTTGTTGACAA+TGG + chr7_3:82022057-82022076 Msa1129960:CDS 40.0%
GCCTTCTGTCTACTAAACTA+AGG + chr7_3:82022518-82022537 Msa1129960:intron 40.0%
CAAAGAGTGAGTGCACTAAT+AGG + chr7_3:82022634-82022653 Msa1129960:CDS 40.0%
AGAAGAGGAAACTGTGAGAT+TGG + chr7_3:82022657-82022676 Msa1129960:CDS 40.0%
CATTTCCACCTAAAGTCATC+AGG - chr7_3:82022699-82022718 None:intergenic 40.0%
CACACAAATGTTAGTCGTAC+AGG - chr7_3:82023778-82023797 None:intergenic 40.0%
CTGTACGACTAACATTTGTG+TGG + chr7_3:82023776-82023795 Msa1129960:intron 40.0%
! ATTGGGAGCAAGAAGAGTTT+TGG + chr7_3:82024262-82024281 Msa1129960:CDS 40.0%
TATGCTGAGCTAATTCTGCT+GGG - chr7_3:82024316-82024335 None:intergenic 40.0%
TTAGCTCAGCATAGCAGAAA+TGG + chr7_3:82024323-82024342 Msa1129960:CDS 40.0%
CGAATGTTATGCAGAATTGC+AGG + chr7_3:82024346-82024365 Msa1129960:CDS 40.0%
GAGTTGAGGGTTGAACAAAT+TGG - chr7_3:82024378-82024397 None:intergenic 40.0%
! CCAATAAGTCAACGAGTTGA+GGG - chr7_3:82024391-82024410 None:intergenic 40.0%
!! CCTCAACTCGTTGACTTATT+GGG + chr7_3:82024389-82024408 Msa1129960:CDS 40.0%
!! GGTCAACTCAACTCTGAAAT+TGG + chr7_3:82024410-82024429 Msa1129960:CDS 40.0%
ACATGTATACCGTATGCTTC+TGG - chr7_3:82024494-82024513 None:intergenic 40.0%
TGCGCCACAACATATCAAAT+CGG + chr7_3:82024642-82024661 Msa1129960:intron 40.0%
! GCTTCATTTGGATTTGGGAT+TGG - chr7_3:82024861-82024880 None:intergenic 40.0%
TGGTGGCTTCATTTGGATTT+GGG - chr7_3:82024866-82024885 None:intergenic 40.0%
ACTTGCAGATGACGTTGAAT+GGG + chr7_3:82024885-82024904 Msa1129960:intron 40.0%
ATGATATAAAGTGTGGTCCC+TGG - chr7_3:82024922-82024941 None:intergenic 40.0%
GTTTCCCTTTCATCAGTCTT+CGG - chr7_3:82025031-82025050 None:intergenic 40.0%
!! CTATGAGTTGGTTTGGTACT+TGG + chr7_3:82025319-82025338 Msa1129960:intron 40.0%
!! TAATGTGAGAGGTTGGTAGT+TGG - chr7_3:82025384-82025403 None:intergenic 40.0%
GCGTATATAATGTGAGAGGT+TGG - chr7_3:82025391-82025410 None:intergenic 40.0%
AAAGTTGCATGTTGTGGTCA+AGG + chr7_3:82025482-82025501 Msa1129960:CDS 40.0%
ATCTCTGTTTGGGCATATGT+TGG - chr7_3:82025543-82025562 None:intergenic 40.0%
CATTGGATGCATGTATTCAC+TGG - chr7_3:82025642-82025661 None:intergenic 40.0%
!! CGTGCTGATTCTTACCCTTA+TGG + chr7_3:82022108-82022127 Msa1129960:CDS 45.0%
TGATAAGGTCAGGCATGTTG+AGG - chr7_3:82022179-82022198 None:intergenic 45.0%
!! AATGGAGAGGCACTACTAGT+TGG + chr7_3:82022375-82022394 Msa1129960:CDS 45.0%
! GGTGCTAATTTTGCTTCTGC+TGG + chr7_3:82022396-82022415 Msa1129960:CDS 45.0%
GAGTGCACTAATAGGAGAAG+AGG + chr7_3:82022642-82022661 Msa1129960:CDS 45.0%
GCACTGTACCTGATGACTTT+AGG + chr7_3:82022688-82022707 Msa1129960:CDS 45.0%
CTGTACCTGATGACTTTAGG+TGG + chr7_3:82022691-82022710 Msa1129960:CDS 45.0%
TGCATGCATATGCATTGCAG+AGG + chr7_3:82024231-82024250 Msa1129960:intron 45.0%
!! GCAAGAAGAGTTTTGGTGAC+TGG + chr7_3:82024269-82024288 Msa1129960:CDS 45.0%
!! AGAGTTTTGGTGACTGGTAC+AGG + chr7_3:82024275-82024294 Msa1129960:CDS 45.0%
CTATGCTGAGCTAATTCTGC+TGG - chr7_3:82024317-82024336 None:intergenic 45.0%
!! CCCTCAACTCGTTGACTTAT+TGG + chr7_3:82024388-82024407 Msa1129960:CDS 45.0%
CCCAATAAGTCAACGAGTTG+AGG - chr7_3:82024392-82024411 None:intergenic 45.0%
GATTTGATATGTTGTGGCGC+AGG - chr7_3:82024643-82024662 None:intergenic 45.0%
GTGGTGGCTTCATTTGGATT+TGG - chr7_3:82024867-82024886 None:intergenic 45.0%
CATTCAACGTCATCTGCAAG+TGG - chr7_3:82024886-82024905 None:intergenic 45.0%
CACTTGCAGATGACGTTGAA+TGG + chr7_3:82024884-82024903 Msa1129960:intron 45.0%
CTTGCAGATGACGTTGAATG+GGG + chr7_3:82024886-82024905 Msa1129960:intron 45.0%
TTGCAGATGACGTTGAATGG+GGG + chr7_3:82024887-82024906 Msa1129960:intron 45.0%
TAAAGTGTGGTCCCTGGAAA+CGG - chr7_3:82024916-82024935 None:intergenic 45.0%
CACAGTCCAATCCCATTGTA+GGG - chr7_3:82025509-82025528 None:intergenic 45.0%
ACACAGTCCAATCCCATTGT+AGG - chr7_3:82025510-82025529 None:intergenic 45.0%
TTTGGGCATATGTTGGATGC+TGG - chr7_3:82025536-82025555 None:intergenic 45.0%
AATCTGTTTGCTCTGTCGCT+TGG - chr7_3:82025593-82025612 None:intergenic 45.0%
AATGCTCGAGCCTCAACTTG+TGG - chr7_3:82022027-82022046 None:intergenic 50.0%
GTAAGAATCAGCACGAGCAG+TGG - chr7_3:82022103-82022122 None:intergenic 50.0%
ATGCACGTAGGTGAGCGAAT+TGG + chr7_3:82022315-82022334 Msa1129960:intron 50.0%
GAGTCCTGAACTCAATGGAG+AGG + chr7_3:82022362-82022381 Msa1129960:CDS 50.0%
AGTGCCTCTCCATTGAGTTC+AGG - chr7_3:82022369-82022388 None:intergenic 50.0%
TGGCGTGATCTTGCAGAGAA+AGG - chr7_3:82022748-82022767 None:intergenic 50.0%
TCTGCTGGGACACAACCTAA+CGG - chr7_3:82024302-82024321 None:intergenic 50.0%
CTGCAAGTGGTGGCTTCATT+TGG - chr7_3:82024873-82024892 None:intergenic 50.0%
TCAACGTCATCTGCAAGTGG+TGG - chr7_3:82024883-82024902 None:intergenic 50.0%
AATGGGGGAAACCGTTTCCA+GGG + chr7_3:82024902-82024921 Msa1129960:intron 50.0%
TGTGGTCAAGGACCCTACAA+TGG + chr7_3:82025494-82025513 Msa1129960:CDS 50.0%
GTGGTCAAGGACCCTACAAT+GGG + chr7_3:82025495-82025514 Msa1129960:CDS 50.0%
CAAGGACCCTACAATGGGAT+TGG + chr7_3:82025500-82025519 Msa1129960:CDS 50.0%
! TGTTTGCTCTGTCGCTTGGA+TGG - chr7_3:82025589-82025608 None:intergenic 50.0%
TATCCAACTCACCGTGCCAC+TGG + chr7_3:82022138-82022157 Msa1129960:CDS 55.0%
GTCAGGCATGTTGAGGCCAT+TGG - chr7_3:82022172-82022191 None:intergenic 55.0%
GTGACTGGTACAGGACCGTT+AGG + chr7_3:82024284-82024303 Msa1129960:CDS 55.0%
GAATGGGGGAAACCGTTTCC+AGG + chr7_3:82024901-82024920 Msa1129960:intron 55.0%
!! TGGAGAAGCGTCCAGTGGCA+CGG - chr7_3:82022152-82022171 None:intergenic 60.0%
GCCACTGGACGCTTCTCCAA+TGG + chr7_3:82022153-82022172 Msa1129960:CDS 60.0%
!! GCCATTGGAGAAGCGTCCAG+TGG - chr7_3:82022157-82022176 None:intergenic 60.0%
CGTCCAGTGGCACGGTGAGT+TGG - chr7_3:82022144-82022163 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 82021946 82025700 82021946 ID=Msa1129960;Name=Msa1129960
chr7_3 mRNA 82021946 82025700 82021946 ID=Msa1129960-mRNA-1;Parent=Msa1129960;Name=Msa1129960-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|1|0.6|1|1|1|5|0|369
chr7_3 exon 82021946 82022198 82021946 ID=Msa1129960-mRNA-1:exon:23981;Parent=Msa1129960-mRNA-1
chr7_3 exon 82022325 82022452 82022325 ID=Msa1129960-mRNA-1:exon:23982;Parent=Msa1129960-mRNA-1
chr7_3 exon 82022583 82022825 82022583 ID=Msa1129960-mRNA-1:exon:23983;Parent=Msa1129960-mRNA-1
chr7_3 exon 82024251 82024503 82024251 ID=Msa1129960-mRNA-1:exon:23984;Parent=Msa1129960-mRNA-1
chr7_3 exon 82025468 82025700 82025468 ID=Msa1129960-mRNA-1:exon:23985;Parent=Msa1129960-mRNA-1
chr7_3 CDS 82021946 82022198 82021946 ID=Msa1129960-mRNA-1:cds;Parent=Msa1129960-mRNA-1
chr7_3 CDS 82022325 82022452 82022325 ID=Msa1129960-mRNA-1:cds;Parent=Msa1129960-mRNA-1
chr7_3 CDS 82022583 82022825 82022583 ID=Msa1129960-mRNA-1:cds;Parent=Msa1129960-mRNA-1
chr7_3 CDS 82024251 82024503 82024251 ID=Msa1129960-mRNA-1:cds;Parent=Msa1129960-mRNA-1
chr7_3 CDS 82025468 82025700 82025468 ID=Msa1129960-mRNA-1:cds;Parent=Msa1129960-mRNA-1
Gene Sequence

>Msa1129960

ATGGACCAAAACAACCAAAGAGTAGTTTTTGTTTCTTGTATGTTAATATGCTTGTTGATAAATTTCAACATTGTTGTTCCACAAGTTGAGGCTCGAGCATTTTTTGTTTTTGGTGATTCACTTGTTGACAATGGCAACAATAACTACTTAGCAACCACTGCTCGTGCTGATTCTTACCCTTATGGCATTGATTATCCAACTCACCGTGCCACTGGACGCTTCTCCAATGGCCTCAACATGCCTGACCTTATCAGTGAGCGAATTGGATCACAACCCACATTACCATATTTGAGTCCTGAACTCAATGGAGAGGCACTACTAGTTGGTGCTAATTTTGCTTCTGCTGGAATTGGAATTCTCAATGACACTGGAATTCAATTTTTTAACATAATCAGAATCACAAGGCAATTGCAATACTTTGAGCAGTATCAGCAAAGAGTGAGTGCACTAATAGGAGAAGAGGAAACTGTGAGATTGGTGAATGAAGCACTGTACCTGATGACTTTAGGTGGAAATGATTTTGTGAACAACTATTTTCTTGTGCCTTTCTCTGCAAGATCACGCCAATTTAGACTTCCAGATTATGTTGTGTACCTCATTTCCGAGTATCGTAAAATTCTTGCGAGGCTTTATGAATTGGGAGCAAGAAGAGTTTTGGTGACTGGTACAGGACCGTTAGGTTGTGTCCCAGCAGAATTAGCTCAGCATAGCAGAAATGGCGAATGTTATGCAGAATTGCAGGAAGCTGCCAATTTGTTCAACCCTCAACTCGTTGACTTATTGGGTCAACTCAACTCTGAAATTGGTTCTGATGTCTTTATTTCTGCAAATGCATTTGCAATGAATATGGATTTCATTGGTAATCCAGAAGCATACGGATTTGCCACATCAAAAGTTGCATGTTGTGGTCAAGGACCCTACAATGGGATTGGACTGTGTACTCCAGCATCCAACATATGCCCAAACAGAGATGCATATGTATTTTGGGACGCTTTCCATCCAAGCGACAGAGCAAACAGATTGATTGTAGAAAGGTTCATGATAGGATCCAGTGAATACATGCATCCAATGAATCTCAGTACCATTATGCTTTTGGATTCAAGAACTTAA

Protein sequence

>Msa1129960

MDQNNQRVVFVSCMLICLLINFNIVVPQVEARAFFVFGDSLVDNGNNNYLATTARADSYPYGIDYPTHRATGRFSNGLNMPDLISERIGSQPTLPYLSPELNGEALLVGANFASAGIGILNDTGIQFFNIIRITRQLQYFEQYQQRVSALIGEEETVRLVNEALYLMTLGGNDFVNNYFLVPFSARSRQFRLPDYVVYLISEYRKILARLYELGARRVLVTGTGPLGCVPAELAQHSRNGECYAELQEAANLFNPQLVDLLGQLNSEIGSDVFISANAFAMNMDFIGNPEAYGFATSKVACCGQGPYNGIGLCTPASNICPNRDAYVFWDAFHPSDRANRLIVERFMIGSSEYMHPMNLSTIMLLDSRT*