AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0219250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0219250 MtrunA17_Chr2g0321701 97.011 368 8 2 1 367 1 366 0.0 712
Msa0219250 MtrunA17_Chr7g0266741 61.633 245 85 6 1 244 1 237 2.61e-97 291
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0219250 AT1G08370.1 61.702 376 124 7 1 366 1 366 4.63e-144 413

Find 142 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCATAACAATTTGTAAAAT+TGG 0.149087 2_1:+66749298 Msa0219250:three_prime_UTR
TGAACCCTAGAATTGAAAAT+TGG 0.165117 2_1:-66744272 None:intergenic
TCTGCTACAATTTCTTCTTC+TGG 0.192913 2_1:+66748445 Msa0219250:CDS
AGAATTGAAAATTGGGGATT+AGG 0.231863 2_1:-66744264 None:intergenic
GTTGGCATAAGCAGAAAATT+TGG 0.247413 2_1:+66745984 Msa0219250:intron
GGACAATCAATTCATTGATA+TGG 0.252052 2_1:+66749124 Msa0219250:intron
CTCAAGAAGTGAATGGTATT+TGG 0.265191 2_1:+66746073 Msa0219250:CDS
CTGCTACAATTTCTTCTTCT+GGG 0.274194 2_1:+66748446 Msa0219250:CDS
GAATTGAAAATTGGGGATTA+GGG 0.310652 2_1:-66744263 None:intergenic
TGGGGATTAGGGTTAGGGTT+AGG 0.310683 2_1:-66744252 None:intergenic
TGCTCTTCTGGTGCTCGTTC+AGG 0.312100 2_1:+66748831 Msa0219250:CDS
GGTCCAGATGAGTGGTTATA+GGG 0.322140 2_1:+66749442 Msa0219250:three_prime_UTR
AAAGGTCCGAGATGCTCTTC+TGG 0.324060 2_1:+66748819 Msa0219250:CDS
TCGTTTATTGCAGGCGGCTA+TGG 0.334449 2_1:+66748372 Msa0219250:intron
GTCAGTATATATAGTTGATA+TGG 0.340044 2_1:-66749396 None:intergenic
GTGCTTTGTTGGTCAAGATT+TGG 0.340757 2_1:-66744334 None:intergenic
TGAGAAGCTTAGTGCTTTGT+TGG 0.343540 2_1:-66744345 None:intergenic
AGGTCCAGATGAGTGGTTAT+AGG 0.353308 2_1:+66749441 Msa0219250:three_prime_UTR
TTCTGAGACATTGTTGCGTT+AGG 0.354119 2_1:-66744298 None:intergenic
CAAGGTGCCTCCGAAGTTAA+AGG 0.354297 2_1:+66746660 Msa0219250:CDS
ATCACAATAAACTGAAATCT+TGG 0.354748 2_1:-66744723 None:intergenic
GGGGATTAGGGTTAGGGTTA+GGG 0.354848 2_1:-66744251 None:intergenic
ACCGAAACATTTAAAAGTTT+AGG 0.354885 2_1:-66749277 None:intergenic
GAAAATTGGGGATTAGGGTT+AGG 0.356060 2_1:-66744258 None:intergenic
GGATTTCGAGTATGAAGTTC+AGG 0.364421 2_1:+66746023 Msa0219250:CDS
GAACCCTAGAATTGAAAATT+GGG 0.367339 2_1:-66744271 None:intergenic
GATCTCTCTTTGTTGTTAAG+AGG 0.370391 2_1:+66744571 Msa0219250:CDS
GGTGGAGTTGGAGGTGGAAA+TGG 0.371979 2_1:-66748742 None:intergenic
TTGCAGTGAGTTTGAGGAAC+TGG 0.375437 2_1:+66747461 Msa0219250:intron
GCAAGTGAAGGTGGTGGAGT+TGG 0.385923 2_1:-66748754 None:intergenic
TGGACTCAGGAGCATCATGC+TGG 0.387575 2_1:-66748549 None:intergenic
CATTTATTGCAGTGAGTTTG+AGG 0.395892 2_1:+66747455 Msa0219250:intron
TTTATAAAGGATGGATCATC+AGG 0.396436 2_1:-66747561 None:intergenic
TCTCTAGAAATAGCTGGGTT+TGG 0.396689 2_1:-66748796 None:intergenic
GGAAACTAGCAAGATCAAAA+TGG 0.406597 2_1:-66749337 None:intergenic
TACACTGAAGAAATTTATAA+AGG 0.413641 2_1:-66747574 None:intergenic
GTACAAGTACAACGACCTTA+TGG 0.413886 2_1:+66748703 Msa0219250:CDS
TTGCAGGCGGCTATGGGTAT+CGG 0.417327 2_1:+66748379 Msa0219250:intron
AAGGTTGGCAGTGGCCCAAC+AGG 0.419285 2_1:-66748487 None:intergenic
GTGATGAATCGTCGCAATAC+TGG 0.422666 2_1:+66744741 Msa0219250:CDS
TTAGGGTTAGGGTTAGGGTT+GGG 0.422672 2_1:-66744246 None:intergenic
AAAATTGGGGATTAGGGTTA+GGG 0.424737 2_1:-66744257 None:intergenic
GCATTTCTATACAATAGATA+TGG 0.429283 2_1:-66746048 None:intergenic
ACTGGAAGCGGTACCAACTA+TGG 0.430022 2_1:+66747479 Msa0219250:CDS
TGTGGCTCGGCTGCTGCTGT+TGG 0.433262 2_1:-66748569 None:intergenic
CATCATGCTGGGGTGTAAGC+GGG 0.434438 2_1:-66748537 None:intergenic
AAGTGGAGGGGCAGTAGGTA+TGG 0.435273 2_1:-66748665 None:intergenic
TCTGAGACATTGTTGCGTTA+GGG 0.437381 2_1:-66744297 None:intergenic
CGTTTATTGCAGGCGGCTAT+GGG 0.438250 2_1:+66748373 Msa0219250:intron
CCCAGCTATTTCTAGAGAAA+AGG 0.446855 2_1:+66748801 Msa0219250:CDS
GTAGATGAGACCTTTAACTT+CGG 0.449889 2_1:-66746670 None:intergenic
ACTCATGCTGCTACACCTGT+TGG 0.450388 2_1:+66748472 Msa0219250:CDS
TGCAGGCGGCTATGGGTATC+GGG 0.455446 2_1:+66748380 Msa0219250:intron
GTTTGGAAGGGGAGAAGAAA+CGG 0.465407 2_1:-66748779 None:intergenic
AGTGAAGGTGGTGGAGTTGG+AGG 0.465872 2_1:-66748751 None:intergenic
GAAGGTGGTGGAGTTGGAGG+TGG 0.470507 2_1:-66748748 None:intergenic
CTCATGCTGCTACACCTGTT+GGG 0.470653 2_1:+66748473 Msa0219250:CDS
AGAAGGCTTCACAAGATTTG+TGG 0.471767 2_1:-66748587 None:intergenic
TTTGGAAGGGGAGAAGAAAC+GGG 0.474369 2_1:-66748778 None:intergenic
GGATGAAGTGGAGGGGCAGT+AGG 0.474418 2_1:-66748670 None:intergenic
TCATCATTGCAGCAGAAGAA+AGG 0.475545 2_1:-66748624 None:intergenic
CGGCTGCTGCTGTTGGACTC+AGG 0.475688 2_1:-66748562 None:intergenic
GCCCCTCCACTTCATCCTAC+TGG 0.476559 2_1:+66748676 Msa0219250:CDS
CACCCCTATAACCACTCATC+TGG 0.476910 2_1:-66749445 None:intergenic
CATCATTGCAGCAGAAGAAA+GGG 0.478689 2_1:-66748623 None:intergenic
TAGAAATAGCTGGGTTTGGA+AGG 0.479374 2_1:-66748792 None:intergenic
AAATTTGGTGGAAAACCTCC+TGG 0.485123 2_1:+66745999 Msa0219250:CDS
ATTAGGGTTAGGGTTAGGGT+TGG 0.487075 2_1:-66744247 None:intergenic
CTGAAGAAATTTATAAAGGA+TGG 0.488509 2_1:-66747570 None:intergenic
GGTGTAAGCGGGGTAGATGT+TGG 0.502227 2_1:-66748526 None:intergenic
AAAACTGAACTATGACATAC+AGG 0.503454 2_1:-66749358 None:intergenic
CAGAGTCGTAAGGATGTTGA+AGG 0.503957 2_1:+66744549 Msa0219250:intron
ATCAGGAACATCAGCTACAT+TGG 0.504995 2_1:-66747544 None:intergenic
GGGGTAGATGTTGGAAGAGA+TGG 0.508718 2_1:-66748517 None:intergenic
TAACATCGATCTCAGCCAAT+GGG 0.512566 2_1:+66744447 Msa0219250:CDS
GCTTCACAAGATTTGTGGCT+CGG 0.516612 2_1:-66748582 None:intergenic
GTGTTTAATTATCAACTCAC+TGG 0.517779 2_1:+66749192 Msa0219250:three_prime_UTR
GCATCATGCTGGGGTGTAAG+CGG 0.523134 2_1:-66748538 None:intergenic
CAACGAAAGGGTCAATTCGT+TGG 0.524030 2_1:-66744381 None:intergenic
GGACTCAGGAGCATCATGCT+GGG 0.525944 2_1:-66748548 None:intergenic
AAGAAGAAGATGATGAAAGA+CGG 0.528548 2_1:-66744219 None:intergenic
GGTGGAAATGGCTGTAGCAT+TGG 0.536920 2_1:-66748730 None:intergenic
GAAATAGCTGGGTTTGGAAG+GGG 0.537359 2_1:-66748790 None:intergenic
AGAGATGGTATCTGCAAGGT+TGG 0.539591 2_1:-66748502 None:intergenic
CCATCCATGACTGCCATAGT+TGG 0.543119 2_1:-66747492 None:intergenic
TGAGAATTTCCTCAACGAAA+GGG 0.543518 2_1:-66744393 None:intergenic
TGTAGCATTGGAGTACCATA+AGG 0.543996 2_1:-66748718 None:intergenic
ATTGTAGCAGAAGACTGATA+AGG 0.546760 2_1:-66748433 None:intergenic
CTTTAACTTCGGAGGCACCT+TGG 0.547820 2_1:-66746659 None:intergenic
AGAAGACTGATAAGGTTGTC+CGG 0.549406 2_1:-66748425 None:intergenic
TTTAGGACATGATTAAAGCC+TGG 0.550610 2_1:-66749260 None:intergenic
AACCCTAGAATTGAAAATTG+GGG 0.551212 2_1:-66744270 None:intergenic
GATGAGACCTTTAACTTCGG+AGG 0.553698 2_1:-66746667 None:intergenic
GAGTGGTTATAGGGGTGCTA+AGG 0.554678 2_1:+66749451 Msa0219250:three_prime_UTR
GGTATCTGCAAGGTTGGCAG+TGG 0.554970 2_1:-66748496 None:intergenic
ATGAGAATTTCCTCAACGAA+AGG 0.557425 2_1:-66744394 None:intergenic
TGCAATGGAAAATGAAATGC+AGG 0.558328 2_1:-66744188 None:intergenic
TGAGTTTGAGGAACTGGAAG+CGG 0.559906 2_1:+66747467 Msa0219250:CDS
AATGCTGCTCAAGAAGTGAA+TGG 0.565199 2_1:+66746066 Msa0219250:CDS
AGAAATAGCTGGGTTTGGAA+GGG 0.568715 2_1:-66748791 None:intergenic
GGCATAAGCAGAAAATTTGG+TGG 0.569335 2_1:+66745987 Msa0219250:intron
CTATATATACTGACATAACA+TGG 0.570626 2_1:+66749405 Msa0219250:three_prime_UTR
ATATACTGACATAACATGGC+AGG 0.574574 2_1:+66749409 Msa0219250:three_prime_UTR
ACTTCAAATGCTCATATCAC+CGG 0.575143 2_1:+66748406 Msa0219250:CDS
GTTGATGATGATGGCTCAAG+AGG 0.578483 2_1:-66747516 None:intergenic
GTAGGTATGGATGAAGACAC+GGG 0.580863 2_1:-66748652 None:intergenic
ACGAATTGACCCTTTCGTTG+AGG 0.585086 2_1:+66744384 Msa0219250:CDS
ACAGTACCAGTAGGATGAAG+TGG 0.589976 2_1:-66748682 None:intergenic
ACGGGAGCAAGTGAAGGTGG+TGG 0.592881 2_1:-66748760 None:intergenic
TTAACATCGATCTCAGCCAA+TGG 0.599690 2_1:+66744446 Msa0219250:CDS
CCAACTATGGCAGTCATGGA+TGG 0.601670 2_1:+66747492 Msa0219250:CDS
AACATGGCAGGAAATGATGA+AGG 0.602059 2_1:+66749421 Msa0219250:three_prime_UTR
AATTTGGTGGAAAACCTCCT+GGG 0.602967 2_1:+66746000 Msa0219250:CDS
GACTCAGGAGCATCATGCTG+GGG 0.604546 2_1:-66748547 None:intergenic
GAAACGGGAGCAAGTGAAGG+TGG 0.605311 2_1:-66748763 None:intergenic
GTCCAGATGAGTGGTTATAG+GGG 0.606920 2_1:+66749443 Msa0219250:three_prime_UTR
ACCAGTAGGATGAAGTGGAG+GGG 0.607968 2_1:-66748677 None:intergenic
GGTACCAACTATGGCAGTCA+TGG 0.610981 2_1:+66747488 Msa0219250:CDS
TAATGCTCGCGAATGTGAAG+AGG 0.613598 2_1:+66746101 Msa0219250:CDS
CGAGCACCAGAAGAGCATCT+CGG 0.613645 2_1:-66748825 None:intergenic
TACCAGTAGGATGAAGTGGA+GGG 0.613698 2_1:-66748678 None:intergenic
TAAAGGTCTCATCTACAAAG+AGG 0.614588 2_1:+66746677 Msa0219250:CDS
ACAGGTGTAGCAGCATGAGT+TGG 0.617968 2_1:-66748469 None:intergenic
TTGGAAGTAGTTGATGATGA+TGG 0.619350 2_1:-66747525 None:intergenic
ATGATGAAGGTCCAGATGAG+TGG 0.632945 2_1:+66749434 Msa0219250:three_prime_UTR
GAAGAAACGGGAGCAAGTGA+AGG 0.633795 2_1:-66748766 None:intergenic
AGTAGGTATGGATGAAGACA+CGG 0.634463 2_1:-66748653 None:intergenic
ATTTGGTGGAAAACCTCCTG+GGG 0.636956 2_1:+66746001 Msa0219250:CDS
AAGACGGAAAGAGAGTGCAA+TGG 0.637967 2_1:-66744203 None:intergenic
GTACCAGTAGGATGAAGTGG+AGG 0.640592 2_1:-66748679 None:intergenic
ATCATGCTGGGGTGTAAGCG+GGG 0.643352 2_1:-66748536 None:intergenic
GATTCTTAATGCATATGCCA+AGG 0.648448 2_1:+66746642 Msa0219250:CDS
AACGCAACAATGTCTCAGAA+CGG 0.658570 2_1:+66744301 Msa0219250:exon
ATCATTGCAGCAGAAGAAAG+GGG 0.660388 2_1:-66748622 None:intergenic
TGTACTTGTACAGTACCAGT+AGG 0.670268 2_1:-66748691 None:intergenic
CATCAATCATGACTTTCGAG+AGG 0.693121 2_1:+66749170 Msa0219250:exon
ATTGCAGCAGAAGAAAGGGG+AGG 0.717430 2_1:-66748619 None:intergenic
TTTGGTGGAAAACCTCCTGG+GGG 0.721595 2_1:+66746002 Msa0219250:CDS
TGGAAGAGATGGTATCTGCA+AGG 0.725008 2_1:-66748506 None:intergenic
TAGGTATGGATGAAGACACG+GGG 0.739412 2_1:-66748651 None:intergenic
AGGTATGGATGAAGACACGG+GGG 0.768571 2_1:-66748650 None:intergenic
GGTATGGATGAAGACACGGG+GGG 0.779869 2_1:-66748649 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAATAAATAAATAA+TGG - chr2_1:66749044-66749063 None:intergenic 0.0%
!!! AAATTTTGGTTTTTTTTAAT+GGG + chr2_1:66744598-66744617 Msa0219250:intron 10.0%
!!! TTAAATTTTCTTATTTGATT+TGG + chr2_1:66744812-66744831 Msa0219250:intron 10.0%
!!! TAATAATATATTTTACAGTT+AGG + chr2_1:66745252-66745271 Msa0219250:intron 10.0%
!!! TCTTTTATACTTAAATTTAT+AGG + chr2_1:66745281-66745300 Msa0219250:intron 10.0%
!!! AGTTTTTCAATTTTAAAAAT+AGG - chr2_1:66745568-66745587 None:intergenic 10.0%
!! GTCAATAATTAAATATAAAA+AGG - chr2_1:66745694-66745713 None:intergenic 10.0%
!!! TTTTTTTTTCTTTTAATATG+GGG + chr2_1:66747881-66747900 Msa0219250:intron 10.0%
!!! ATCACAATAATATTTTTTTT+TGG + chr2_1:66748891-66748910 Msa0219250:intron 10.0%
!!! TTTCTAATTTATCTATTTTT+TGG + chr2_1:66749092-66749111 Msa0219250:intron 10.0%
!!! TGTATTTTATTAAATTGTTA+TGG + chr2_1:66749497-66749516 Msa0219250:three_prime_UTR 10.0%
!!! GAAATTTTGGTTTTTTTTAA+TGG + chr2_1:66744597-66744616 Msa0219250:intron 15.0%
!!! AATTTTGGTTTTTTTTAATG+GGG + chr2_1:66744599-66744618 Msa0219250:intron 15.0%
!!! TTTTTAATTGAGGTTAATTT+TGG + chr2_1:66744665-66744684 Msa0219250:intron 15.0%
!!! AAATTTATAGGATTTGTTTT+AGG + chr2_1:66745293-66745312 Msa0219250:intron 15.0%
!!! ATGAAAAAAAAGCTAATTTT+AGG + chr2_1:66745495-66745514 Msa0219250:intron 15.0%
!!! TGAAAAAAAAGCTAATTTTA+GGG + chr2_1:66745496-66745515 Msa0219250:intron 15.0%
!!! TCAATATTGATATTTTATTG+TGG + chr2_1:66746247-66746266 Msa0219250:intron 15.0%
!!! TATTTGTTAGAATTTTAGAA+AGG + chr2_1:66746431-66746450 Msa0219250:intron 15.0%
!!! AAAGTACAATTATTTCTTTT+AGG + chr2_1:66746460-66746479 Msa0219250:intron 15.0%
!!! AAGTACAATTATTTCTTTTA+GGG + chr2_1:66746461-66746480 Msa0219250:intron 15.0%
!! AGCTAAGAAATATAATAATA+TGG - chr2_1:66746763-66746782 None:intergenic 15.0%
!!! GAAAATATTTTACATGAATA+TGG - chr2_1:66747767-66747786 None:intergenic 15.0%
!! GAAGAATTAAAAATTGTATT+TGG - chr2_1:66748074-66748093 None:intergenic 15.0%
!!! ATTTTGAATTGAAATTTCAT+TGG + chr2_1:66748158-66748177 Msa0219250:intron 15.0%
!! AGAGAAAATACAAAAAAAAG+GGG - chr2_1:66744487-66744506 None:intergenic 20.0%
!! GAGAGAAAATACAAAAAAAA+GGG - chr2_1:66744488-66744507 None:intergenic 20.0%
!! AGAGAGAAAATACAAAAAAA+AGG - chr2_1:66744489-66744508 None:intergenic 20.0%
!!! ATTGATTTAAGTGGTTTAAT+TGG + chr2_1:66744635-66744654 Msa0219250:intron 20.0%
!! TTGATTTAAGTGGTTTAATT+GGG + chr2_1:66744636-66744655 Msa0219250:intron 20.0%
!!! TATCACATTTTCTGTTAATA+TGG + chr2_1:66745101-66745120 Msa0219250:intron 20.0%
!!! TGTATAATTGTGGTTTTTAT+AGG - chr2_1:66745415-66745434 None:intergenic 20.0%
!! AAATTGAAAAACTGAATAGT+TGG + chr2_1:66745575-66745594 Msa0219250:intron 20.0%
!! CATAAAAATTTAAAAGGGAA+TGG - chr2_1:66745664-66745683 None:intergenic 20.0%
!! TGTCGCATAAAAATTTAAAA+GGG - chr2_1:66745669-66745688 None:intergenic 20.0%
!! ATGTCGCATAAAAATTTAAA+AGG - chr2_1:66745670-66745689 None:intergenic 20.0%
!!! GTATTGTAGATATTGTTTTA+AGG + chr2_1:66745880-66745899 Msa0219250:intron 20.0%
!!! TGAAAATATACTTTTGTGAT+TGG + chr2_1:66745904-66745923 Msa0219250:intron 20.0%
!! ACAAAGATTAAATACATACA+TGG - chr2_1:66745960-66745979 None:intergenic 20.0%
!! TATTTAATCTTTGTCATTGT+TGG + chr2_1:66745966-66745985 Msa0219250:intron 20.0%
!!! TCTGATTATTTATTTTTTGC+AGG - chr2_1:66746292-66746311 None:intergenic 20.0%
!! TATATACATTCACTTATGTT+TGG + chr2_1:66746608-66746627 Msa0219250:intron 20.0%
!!! GTTGTTGTATAATGTTATTT+TGG + chr2_1:66747051-66747070 Msa0219250:intron 20.0%
!!! TGTATAATGTTATTTTGGTT+TGG + chr2_1:66747056-66747075 Msa0219250:intron 20.0%
!!! TATTTCTGAATATCAAAGAT+GGG - chr2_1:66747189-66747208 None:intergenic 20.0%
!!! ATATTTCTGAATATCAAAGA+TGG - chr2_1:66747190-66747209 None:intergenic 20.0%
!! TCTTTGATATTCAGAAATAT+TGG + chr2_1:66747190-66747209 Msa0219250:intron 20.0%
!!! TTTTTTCTAAAGACAAAATG+AGG - chr2_1:66747303-66747322 None:intergenic 20.0%
!! TACACTGAAGAAATTTATAA+AGG - chr2_1:66747577-66747596 None:intergenic 20.0%
!!! TTTCAAATAATTTGTTACGA+CGG + chr2_1:66747624-66747643 Msa0219250:intron 20.0%
!! ATAGAAAATGAAAGGAAAAA+AGG - chr2_1:66747650-66747669 None:intergenic 20.0%
!! TGGTTAAAAATTAAAAAACG+AGG - chr2_1:66747747-66747766 None:intergenic 20.0%
!! TTATTGATGTTAGAGAATAA+AGG + chr2_1:66747813-66747832 Msa0219250:intron 20.0%
!!! TAGAAAAAGTGTGTAAAAAA+TGG - chr2_1:66748188-66748207 None:intergenic 20.0%
!! AATAATATTAAACGACTGTT+TGG + chr2_1:66748972-66748991 Msa0219250:intron 20.0%
!! ATAATATTAAACGACTGTTT+GGG + chr2_1:66748973-66748992 Msa0219250:intron 20.0%
!!! ATATTTTATGATCCTTATCA+AGG + chr2_1:66749004-66749023 Msa0219250:intron 20.0%
!! TAGATAAATTAGAAATTGAG+AGG - chr2_1:66749087-66749106 None:intergenic 20.0%
!!! TTACATTTTCTAGAAGTTTT+AGG + chr2_1:66749237-66749256 Msa0219250:three_prime_UTR 20.0%
!!! TCCTAAACTTTTAAATGTTT+CGG + chr2_1:66749276-66749295 Msa0219250:three_prime_UTR 20.0%
!! GTCATAACAATTTGTAAAAT+TGG + chr2_1:66749298-66749317 Msa0219250:three_prime_UTR 20.0%
!!! TTTCATTTTTCAACAAAACA+TGG + chr2_1:66749529-66749548 Msa0219250:three_prime_UTR 20.0%
!!! TGTTAAGAGGTTTGAAATTT+TGG + chr2_1:66744584-66744603 Msa0219250:intron 25.0%
!!! TTTTTTTTAATGGGGTTGAT+GGG + chr2_1:66744607-66744626 Msa0219250:intron 25.0%
!!! TGGGTTTTAATTGATTTAAG+TGG + chr2_1:66744626-66744645 Msa0219250:intron 25.0%
!!! TGGGAATTTGTTTTTAATTG+AGG + chr2_1:66744655-66744674 Msa0219250:intron 25.0%
! ATCACAATAAACTGAAATCT+TGG - chr2_1:66744726-66744745 None:intergenic 25.0%
! CTAGTTTACTAATAATCCAA+TGG - chr2_1:66744875-66744894 None:intergenic 25.0%
! TTATTAGTAAACTAGACTAC+AGG + chr2_1:66744880-66744899 Msa0219250:intron 25.0%
! ATGTAGTACAAATCATATAG+CGG - chr2_1:66744955-66744974 None:intergenic 25.0%
! AGTATATTGTGAAACAATAG+TGG + chr2_1:66744975-66744994 Msa0219250:intron 25.0%
!!! TATAGGATTTGTTTTAGGTT+TGG + chr2_1:66745298-66745317 Msa0219250:intron 25.0%
!!! TATATCATAGTGGATTTTGA+TGG + chr2_1:66745385-66745404 Msa0219250:intron 25.0%
!!! TTTTAAAAATAGGTCATGTC+TGG - chr2_1:66745558-66745577 None:intergenic 25.0%
!! AAATATACTTTTGTGATTGG+TGG + chr2_1:66745907-66745926 Msa0219250:intron 25.0%
! TAAATACATACATGGACATA+GGG - chr2_1:66745952-66745971 None:intergenic 25.0%
! TTAAATACATACATGGACAT+AGG - chr2_1:66745953-66745972 None:intergenic 25.0%
! GCATTTCTATACAATAGATA+TGG - chr2_1:66746051-66746070 None:intergenic 25.0%
! TGTTTCACTTATTTGAGAAT+AGG + chr2_1:66746208-66746227 Msa0219250:intron 25.0%
! TATCAATATTGATGAATGCA+AGG - chr2_1:66746239-66746258 None:intergenic 25.0%
!!! TATTTTTTGCAGGTTTTACA+AGG - chr2_1:66746282-66746301 None:intergenic 25.0%
! TATTTAATTAGTGGTGACTT+TGG + chr2_1:66746509-66746528 Msa0219250:intron 25.0%
! TCATGTTATTCTACTTCTAT+GGG + chr2_1:66746919-66746938 Msa0219250:intron 25.0%
!!! ATGTTATTTTGGTTTGGAAA+TGG + chr2_1:66747062-66747081 Msa0219250:intron 25.0%
!!! TGTTATTTTGGTTTGGAAAT+GGG + chr2_1:66747063-66747082 Msa0219250:intron 25.0%
!! TGATGTTGAAATCTTTTGAT+GGG - chr2_1:66747335-66747354 None:intergenic 25.0%
!! TTGATGTTGAAATCTTTTGA+TGG - chr2_1:66747336-66747355 None:intergenic 25.0%
! CTGAAGAAATTTATAAAGGA+TGG - chr2_1:66747573-66747592 None:intergenic 25.0%
! AAGACAGTATAGAAAATGAA+AGG - chr2_1:66747658-66747677 None:intergenic 25.0%
!! TTTTCTATACTGTCTTGAAA+TGG + chr2_1:66747662-66747681 Msa0219250:intron 25.0%
! TTGAATTAACAAAGACATAC+TGG + chr2_1:66747843-66747862 Msa0219250:intron 25.0%
!! TTTTTCTTTTAATATGGGGA+AGG + chr2_1:66747885-66747904 Msa0219250:intron 25.0%
!! TTTTCTTTTAATATGGGGAA+GGG + chr2_1:66747886-66747905 Msa0219250:intron 25.0%
!! TATTTGGAATTAATCCTAGT+CGG - chr2_1:66748058-66748077 None:intergenic 25.0%
! CAAATGAAAATGATCATAAG+TGG - chr2_1:66748271-66748290 None:intergenic 25.0%
! AATATGTAATATTCAGCACA+TGG + chr2_1:66748297-66748316 Msa0219250:intron 25.0%
! TTAATATATGCTCCTTGATA+AGG - chr2_1:66749019-66749038 None:intergenic 25.0%
!!! TTTATCTATTTTTTGGCTCT+TGG + chr2_1:66749099-66749118 Msa0219250:intron 25.0%
! ACCGAAACATTTAAAAGTTT+AGG - chr2_1:66749280-66749299 None:intergenic 25.0%
!! GTCAGTATATATAGTTGATA+TGG - chr2_1:66749399-66749418 None:intergenic 25.0%
! CTATATATACTGACATAACA+TGG + chr2_1:66749405-66749424 Msa0219250:three_prime_UTR 25.0%
! TGTAATCCACACAAAAAAAT+AGG - chr2_1:66749588-66749607 None:intergenic 25.0%
AAGAAGAAGATGATGAAAGA+CGG - chr2_1:66744222-66744241 None:intergenic 30.0%
GAATTGAAAATTGGGGATTA+GGG - chr2_1:66744266-66744285 None:intergenic 30.0%
AGAATTGAAAATTGGGGATT+AGG - chr2_1:66744267-66744286 None:intergenic 30.0%
! AATCCCCAATTTTCAATTCT+AGG + chr2_1:66744267-66744286 Msa0219250:five_prime_UTR 30.0%
! ATCCCCAATTTTCAATTCTA+GGG + chr2_1:66744268-66744287 Msa0219250:five_prime_UTR 30.0%
AACCCTAGAATTGAAAATTG+GGG - chr2_1:66744273-66744292 None:intergenic 30.0%
GAACCCTAGAATTGAAAATT+GGG - chr2_1:66744274-66744293 None:intergenic 30.0%
TGAACCCTAGAATTGAAAAT+TGG - chr2_1:66744275-66744294 None:intergenic 30.0%
!!! GTTTTTTTTAATGGGGTTGA+TGG + chr2_1:66744606-66744625 Msa0219250:intron 30.0%
!!! GGTTTTTTCTGAATTACTCT+AGG + chr2_1:66744996-66745015 Msa0219250:intron 30.0%
! AGTGTTGTTAAATAGCAGTT+AGG - chr2_1:66745038-66745057 None:intergenic 30.0%
! TGCTATTTAACAACACTGAT+AGG + chr2_1:66745041-66745060 Msa0219250:intron 30.0%
! CACATTTTCTGTTAATATGG+TGG + chr2_1:66745104-66745123 Msa0219250:intron 30.0%
TAAATTTCAGTTTGTCACCT+TGG + chr2_1:66745132-66745151 Msa0219250:intron 30.0%
!!! TATAGTTTTGAGTTACAGTC+TGG + chr2_1:66745178-66745197 Msa0219250:intron 30.0%
!!! TTTGTTTTAGGTTTGGTTAC+CGG + chr2_1:66745305-66745324 Msa0219250:intron 30.0%
!! TTTGAAGTGTTGTCAAATAG+TGG + chr2_1:66745359-66745378 Msa0219250:intron 30.0%
! TATTGGCTACTGTATAATTG+TGG - chr2_1:66745425-66745444 None:intergenic 30.0%
AAGCATACCTACATATTGAA+AGG - chr2_1:66745636-66745655 None:intergenic 30.0%
!!! ATTTCACATAGTGGGTTTTT+CGG + chr2_1:66745775-66745794 Msa0219250:intron 30.0%
CTGTTATCAATAGTGAATTG+CGG - chr2_1:66745815-66745834 None:intergenic 30.0%
GTGAAACAAAATTCTAGTCT+GGG - chr2_1:66746196-66746215 None:intergenic 30.0%
AGTGAAACAAAATTCTAGTC+TGG - chr2_1:66746197-66746216 None:intergenic 30.0%
TGTACTTTAGACACATTCAA+TGG + chr2_1:66746314-66746333 Msa0219250:intron 30.0%
GTACTTTAGACACATTCAAT+GGG + chr2_1:66746315-66746334 Msa0219250:intron 30.0%
TACTTTAGACACATTCAATG+GGG + chr2_1:66746316-66746335 Msa0219250:intron 30.0%
CTAGTAAGTTATCTGAGAAA+CGG + chr2_1:66746364-66746383 Msa0219250:intron 30.0%
! CTTATGTTTGGCTAATTTTC+AGG + chr2_1:66746620-66746639 Msa0219250:intron 30.0%
ATGTGATAGTAAAGTAGAAC+GGG - chr2_1:66746790-66746809 None:intergenic 30.0%
GATGTGATAGTAAAGTAGAA+CGG - chr2_1:66746791-66746810 None:intergenic 30.0%
CTCATGTTATTCTACTTCTA+TGG + chr2_1:66746918-66746937 Msa0219250:intron 30.0%
ATTATATATCGACATGCAAG+TGG - chr2_1:66747005-66747024 None:intergenic 30.0%
AGAAATCTAAGAATGCAACA+TGG - chr2_1:66747218-66747237 None:intergenic 30.0%
TACTTTATCCGTTTAAGCTT+TGG + chr2_1:66747244-66747263 Msa0219250:intron 30.0%
GAGATTATCCAAAGCTTAAA+CGG - chr2_1:66747255-66747274 None:intergenic 30.0%
AAATGAGGATAGTACAATGA+GGG - chr2_1:66747288-66747307 None:intergenic 30.0%
AAAATGAGGATAGTACAATG+AGG - chr2_1:66747289-66747308 None:intergenic 30.0%
TTTATAAAGGATGGATCATC+AGG - chr2_1:66747564-66747583 None:intergenic 30.0%
! TTTCTTTTAATATGGGGAAG+GGG + chr2_1:66747887-66747906 Msa0219250:intron 30.0%
GGGGAAATCATTAATTAAAG+TGG + chr2_1:66747907-66747926 Msa0219250:intron 30.0%
! CATTTTACAATTCTCCTCAA+GGG + chr2_1:66747940-66747959 Msa0219250:intron 30.0%
! ATTTTACAATTCTCCTCAAG+GGG + chr2_1:66747941-66747960 Msa0219250:intron 30.0%
AGTTAACTTATTAGTCCATG+AGG - chr2_1:66748022-66748041 None:intergenic 30.0%
GGACTAATAAGTTAACTGAT+TGG + chr2_1:66748025-66748044 Msa0219250:intron 30.0%
! ATTTGGAATTAATCCTAGTC+GGG - chr2_1:66748057-66748076 None:intergenic 30.0%
TGTACCAACTTTAGTATTTC+TGG + chr2_1:66748104-66748123 Msa0219250:intron 30.0%
AATGCCAGAAATACTAAAGT+TGG - chr2_1:66748111-66748130 None:intergenic 30.0%
!! TTTTCTATGCTAGACTTGTT+TGG + chr2_1:66748201-66748220 Msa0219250:intron 30.0%
GGACAATCAATTCATTGATA+TGG + chr2_1:66749124-66749143 Msa0219250:intron 30.0%
GTGTTTAATTATCAACTCAC+TGG + chr2_1:66749192-66749211 Msa0219250:three_prime_UTR 30.0%
!!! TCACTGGAAGAATTGTTTTT+TGG + chr2_1:66749208-66749227 Msa0219250:three_prime_UTR 30.0%
!!! CACTGGAAGAATTGTTTTTT+GGG + chr2_1:66749209-66749228 Msa0219250:three_prime_UTR 30.0%
AAAACTGAACTATGACATAC+AGG - chr2_1:66749361-66749380 None:intergenic 30.0%
TGCAATGGAAAATGAAATGC+AGG - chr2_1:66744191-66744210 None:intergenic 35.0%
AAAATTGGGGATTAGGGTTA+GGG - chr2_1:66744260-66744279 None:intergenic 35.0%
TGAGAATTTCCTCAACGAAA+GGG - chr2_1:66744396-66744415 None:intergenic 35.0%
ATGAGAATTTCCTCAACGAA+AGG - chr2_1:66744397-66744416 None:intergenic 35.0%
!! GATCTCTCTTTGTTGTTAAG+AGG + chr2_1:66744571-66744590 Msa0219250:CDS 35.0%
TGAATTACTCTAGGCTATAG+TGG + chr2_1:66745005-66745024 Msa0219250:intron 35.0%
ATACCTACATATTGAAAGGC+TGG - chr2_1:66745632-66745651 None:intergenic 35.0%
TGACTTATTTCAACTGCGTT+CGG + chr2_1:66745710-66745729 Msa0219250:intron 35.0%
GAAAAACCCACTATGTGAAA+TGG - chr2_1:66745776-66745795 None:intergenic 35.0%
GTTGGCATAAGCAGAAAATT+TGG + chr2_1:66745984-66746003 Msa0219250:intron 35.0%
CTCAAGAAGTGAATGGTATT+TGG + chr2_1:66746073-66746092 Msa0219250:CDS 35.0%
!! AGGTTGCAAATCTTTTTAGC+AGG + chr2_1:66746121-66746140 Msa0219250:CDS 35.0%
!! CAGGTATTGTTTTCACGTTT+TGG + chr2_1:66746140-66746159 Msa0219250:intron 35.0%
CGTTTCTCAGATAACTTACT+AGG - chr2_1:66746366-66746385 None:intergenic 35.0%
AATATTAGCAGCGGATAGAT+AGG + chr2_1:66746389-66746408 Msa0219250:intron 35.0%
GATTCTTAATGCATATGCCA+AGG + chr2_1:66746642-66746661 Msa0219250:CDS 35.0%
! GTAGATGAGACCTTTAACTT+CGG - chr2_1:66746673-66746692 None:intergenic 35.0%
TAAAGGTCTCATCTACAAAG+AGG + chr2_1:66746677-66746696 Msa0219250:CDS 35.0%
CATGCATTTGACAAATGCAT+GGG + chr2_1:66746822-66746841 Msa0219250:intron 35.0%
ATGCATTTGACAAATGCATG+GGG + chr2_1:66746823-66746842 Msa0219250:intron 35.0%
TTGTCTTTCTGTTGCATGTT+TGG + chr2_1:66746870-66746889 Msa0219250:intron 35.0%
ATTATACAACAACATGCCCA+AGG - chr2_1:66747044-66747063 None:intergenic 35.0%
AATGAGGATAGTACAATGAG+GGG - chr2_1:66747287-66747306 None:intergenic 35.0%
CATTTATTGCAGTGAGTTTG+AGG + chr2_1:66747455-66747474 Msa0219250:intron 35.0%
!! TTGGAAGTAGTTGATGATGA+TGG - chr2_1:66747528-66747547 None:intergenic 35.0%
!! CAAAAGAAAAGTGTTCGCAA+TGG - chr2_1:66747604-66747623 None:intergenic 35.0%
CTTATCTTACTTGTGTCCTT+TGG + chr2_1:66747701-66747720 Msa0219250:intron 35.0%
! TTCTTTTAATATGGGGAAGG+GGG + chr2_1:66747888-66747907 Msa0219250:intron 35.0%
CCTTGAGGAGAATTGTAAAA+TGG - chr2_1:66747942-66747961 None:intergenic 35.0%
! CCATTTTACAATTCTCCTCA+AGG + chr2_1:66747939-66747958 Msa0219250:intron 35.0%
ATTTGAACTCCATCCTATGT+GGG + chr2_1:66747964-66747983 Msa0219250:intron 35.0%
! TTTTGACCTTATACCCACAT+AGG - chr2_1:66747980-66747999 None:intergenic 35.0%
TTCTAAGCGACTCACATATT+TGG + chr2_1:66748129-66748148 Msa0219250:intron 35.0%
! TTTGTAACTCAGTTCTGATC+AGG + chr2_1:66748349-66748368 Msa0219250:intron 35.0%
ACTTCAAATGCTCATATCAC+CGG + chr2_1:66748406-66748425 Msa0219250:CDS 35.0%
ATTGTAGCAGAAGACTGATA+AGG - chr2_1:66748436-66748455 None:intergenic 35.0%
TCTGCTACAATTTCTTCTTC+TGG + chr2_1:66748445-66748464 Msa0219250:CDS 35.0%
CTGCTACAATTTCTTCTTCT+GGG + chr2_1:66748446-66748465 Msa0219250:CDS 35.0%
!! CCTTTTCTCTAGAAATAGCT+GGG - chr2_1:66748804-66748823 None:intergenic 35.0%
!! ACCTTTTCTCTAGAAATAGC+TGG - chr2_1:66748805-66748824 None:intergenic 35.0%
TCCCTTGTGTCAATTTAAGT+GGG - chr2_1:66748931-66748950 None:intergenic 35.0%
!!! TCTATTTTTTGGCTCTTGGT+AGG + chr2_1:66749103-66749122 Msa0219250:intron 35.0%
!!! TTTTCTAGAAGTTTTAGGCC+AGG + chr2_1:66749242-66749261 Msa0219250:three_prime_UTR 35.0%
! TTTAGGACATGATTAAAGCC+TGG - chr2_1:66749263-66749282 None:intergenic 35.0%
GGAAACTAGCAAGATCAAAA+TGG - chr2_1:66749340-66749359 None:intergenic 35.0%
! GTCATAGTTCAGTTTTCTAC+AGG + chr2_1:66749365-66749384 Msa0219250:three_prime_UTR 35.0%
ATATACTGACATAACATGGC+AGG + chr2_1:66749409-66749428 Msa0219250:three_prime_UTR 35.0%
!!! AGTCAGCCTATTTTTTTGTG+TGG + chr2_1:66749579-66749598 Msa0219250:three_prime_UTR 35.0%
GAAAATTGGGGATTAGGGTT+AGG - chr2_1:66744261-66744280 None:intergenic 40.0%
! TCTGAGACATTGTTGCGTTA+GGG - chr2_1:66744300-66744319 None:intergenic 40.0%
!! TTCTGAGACATTGTTGCGTT+AGG - chr2_1:66744301-66744320 None:intergenic 40.0%
AACGCAACAATGTCTCAGAA+CGG + chr2_1:66744301-66744320 Msa0219250:exon 40.0%
! GTGCTTTGTTGGTCAAGATT+TGG - chr2_1:66744337-66744356 None:intergenic 40.0%
TGAGAAGCTTAGTGCTTTGT+TGG - chr2_1:66744348-66744367 None:intergenic 40.0%
TTAACATCGATCTCAGCCAA+TGG + chr2_1:66744446-66744465 Msa0219250:CDS 40.0%
TAACATCGATCTCAGCCAAT+GGG + chr2_1:66744447-66744466 Msa0219250:CDS 40.0%
GTGAAAATGAACGAACCCAT+TGG - chr2_1:66744465-66744484 None:intergenic 40.0%
!! GATTGTTTTGCAGAGTCGTA+AGG + chr2_1:66744539-66744558 Msa0219250:intron 40.0%
ATCCAATGGACACACATGTT+TGG - chr2_1:66744861-66744880 None:intergenic 40.0%
AAATCATATAGCGGCCATAG+TGG - chr2_1:66744946-66744965 None:intergenic 40.0%
ACTCTAGGCTATAGTGGTAT+TGG + chr2_1:66745011-66745030 Msa0219250:intron 40.0%
CTCTAGGCTATAGTGGTATT+GGG + chr2_1:66745012-66745031 Msa0219250:intron 40.0%
! TTTGAGTTACAGTCTGGTCT+TGG + chr2_1:66745184-66745203 Msa0219250:intron 40.0%
CGAAACACGAGCAAATATAG+AGG - chr2_1:66745232-66745251 None:intergenic 40.0%
ATAGTGGCGCTATATCATAG+TGG + chr2_1:66745375-66745394 Msa0219250:intron 40.0%
! TAGCAGCTGATATTGGCTAT+TGG - chr2_1:66745442-66745461 None:intergenic 40.0%
AGTGGAATAGCAGCTGATAT+TGG - chr2_1:66745449-66745468 None:intergenic 40.0%
ACTATTCGTTAGCAGATGTG+CGG + chr2_1:66745466-66745485 Msa0219250:intron 40.0%
TCTGCTACCATTTCACATAG+TGG + chr2_1:66745766-66745785 Msa0219250:intron 40.0%
CTGCTACCATTTCACATAGT+GGG + chr2_1:66745767-66745786 Msa0219250:intron 40.0%
GGCATAAGCAGAAAATTTGG+TGG + chr2_1:66745987-66746006 Msa0219250:intron 40.0%
! AAATTTGGTGGAAAACCTCC+TGG + chr2_1:66745999-66746018 Msa0219250:CDS 40.0%
! AATTTGGTGGAAAACCTCCT+GGG + chr2_1:66746000-66746019 Msa0219250:CDS 40.0%
! GGATTTCGAGTATGAAGTTC+AGG + chr2_1:66746023-66746042 Msa0219250:CDS 40.0%
AATGCTGCTCAAGAAGTGAA+TGG + chr2_1:66746066-66746085 Msa0219250:CDS 40.0%
AATTCTAGTCTGGGCGTATA+GGG - chr2_1:66746187-66746206 None:intergenic 40.0%
AAATTCTAGTCTGGGCGTAT+AGG - chr2_1:66746188-66746207 None:intergenic 40.0%
TCATTAAACTCTCACCTCAC+AGG + chr2_1:66746558-66746577 Msa0219250:intron 40.0%
CCATGCATTTGTCAAATGCA+TGG - chr2_1:66746824-66746843 None:intergenic 40.0%
CCATGCATTTGACAAATGCA+TGG + chr2_1:66746821-66746840 Msa0219250:intron 40.0%
GGGGTTTGAATTGATCTTCA+TGG + chr2_1:66746842-66746861 Msa0219250:intron 40.0%
ATGAGGATAGTACAATGAGG+GGG - chr2_1:66747286-66747305 None:intergenic 40.0%
TGCAGTAGACAGATGAGTTA+TGG + chr2_1:66747366-66747385 Msa0219250:intron 40.0%
CACTGCAATAAATGCAAGTG+AGG - chr2_1:66747449-66747468 None:intergenic 40.0%
ATCAGGAACATCAGCTACAT+TGG - chr2_1:66747547-66747566 None:intergenic 40.0%
GATTTGAACTCCATCCTATG+TGG + chr2_1:66747963-66747982 Msa0219250:intron 40.0%
AAGATCCTCTGATGAGCATA+TGG + chr2_1:66748241-66748260 Msa0219250:intron 40.0%
AGAAGACTGATAAGGTTGTC+CGG - chr2_1:66748428-66748447 None:intergenic 40.0%
AGAAGGCTTCACAAGATTTG+TGG - chr2_1:66748590-66748609 None:intergenic 40.0%
AGGGGAGGAACAAAAAAAGA+AGG - chr2_1:66748607-66748626 None:intergenic 40.0%
ATCATTGCAGCAGAAGAAAG+GGG - chr2_1:66748625-66748644 None:intergenic 40.0%
CATCATTGCAGCAGAAGAAA+GGG - chr2_1:66748626-66748645 None:intergenic 40.0%
TCATCATTGCAGCAGAAGAA+AGG - chr2_1:66748627-66748646 None:intergenic 40.0%
AGTAGGTATGGATGAAGACA+CGG - chr2_1:66748656-66748675 None:intergenic 40.0%
TGTACTTGTACAGTACCAGT+AGG - chr2_1:66748694-66748713 None:intergenic 40.0%
GTACAAGTACAACGACCTTA+TGG + chr2_1:66748703-66748722 Msa0219250:CDS 40.0%
! TGTAGCATTGGAGTACCATA+AGG - chr2_1:66748721-66748740 None:intergenic 40.0%
AGAAATAGCTGGGTTTGGAA+GGG - chr2_1:66748794-66748813 None:intergenic 40.0%
TAGAAATAGCTGGGTTTGGA+AGG - chr2_1:66748795-66748814 None:intergenic 40.0%
! TCTCTAGAAATAGCTGGGTT+TGG - chr2_1:66748799-66748818 None:intergenic 40.0%
!! CCCAGCTATTTCTAGAGAAA+AGG + chr2_1:66748801-66748820 Msa0219250:CDS 40.0%
AGCCCACTTAAATTGACACA+AGG + chr2_1:66748926-66748945 Msa0219250:intron 40.0%
GCCCACTTAAATTGACACAA+GGG + chr2_1:66748927-66748946 Msa0219250:intron 40.0%
CTCCCTTGTGTCAATTTAAG+TGG - chr2_1:66748932-66748951 None:intergenic 40.0%
CATCAATCATGACTTTCGAG+AGG + chr2_1:66749170-66749189 Msa0219250:exon 40.0%
AACATGGCAGGAAATGATGA+AGG + chr2_1:66749421-66749440 Msa0219250:three_prime_UTR 40.0%
! AAGACGGAAAGAGAGTGCAA+TGG - chr2_1:66744206-66744225 None:intergenic 45.0%
TTAGGGTTAGGGTTAGGGTT+GGG - chr2_1:66744249-66744268 None:intergenic 45.0%
ATTAGGGTTAGGGTTAGGGT+TGG - chr2_1:66744250-66744269 None:intergenic 45.0%
CAACGAAAGGGTCAATTCGT+TGG - chr2_1:66744384-66744403 None:intergenic 45.0%
ACGAATTGACCCTTTCGTTG+AGG + chr2_1:66744384-66744403 Msa0219250:CDS 45.0%
CAGAGTCGTAAGGATGTTGA+AGG + chr2_1:66744549-66744568 Msa0219250:intron 45.0%
GTGATGAATCGTCGCAATAC+TGG + chr2_1:66744741-66744760 Msa0219250:CDS 45.0%
CAATGGACACACATGTTTGG+AGG - chr2_1:66744858-66744877 None:intergenic 45.0%
CTCCAAACATGTGTGTCCAT+TGG + chr2_1:66744856-66744875 Msa0219250:intron 45.0%
CAGTTTGTCACCTTGGTTGT+TGG + chr2_1:66745139-66745158 Msa0219250:intron 45.0%
!! CACTAGCTTTCCAACAACCA+AGG - chr2_1:66745152-66745171 None:intergenic 45.0%
TGATGCAGAAAGTGGAATGC+CGG - chr2_1:66745327-66745346 None:intergenic 45.0%
TGAGTGCATGATGCAGAAAG+TGG - chr2_1:66745335-66745354 None:intergenic 45.0%
GCACATCTGCTAACGAATAG+TGG - chr2_1:66745467-66745486 None:intergenic 45.0%
GTGCCAGCCTTTCAATATGT+AGG + chr2_1:66745626-66745645 Msa0219250:intron 45.0%
AGATACTCAGATAGCGTTGC+GGG - chr2_1:66745749-66745768 None:intergenic 45.0%
CAGATACTCAGATAGCGTTG+CGG - chr2_1:66745750-66745769 None:intergenic 45.0%
! ATTTGGTGGAAAACCTCCTG+GGG + chr2_1:66746001-66746020 Msa0219250:CDS 45.0%
TAATGCTCGCGAATGTGAAG+AGG + chr2_1:66746101-66746120 Msa0219250:CDS 45.0%
GAAACGGCGAATATTAGCAG+CGG + chr2_1:66746380-66746399 Msa0219250:intron 45.0%
!! GCGGATAGATAGGCTTTGAA+TGG + chr2_1:66746399-66746418 Msa0219250:intron 45.0%
! GGTGACTTTGGTTTCTGATC+TGG + chr2_1:66746521-66746540 Msa0219250:intron 45.0%
! GATGAGACCTTTAACTTCGG+AGG - chr2_1:66746670-66746689 None:intergenic 45.0%
CCATTCATGGGAGAGCAATA+AGG - chr2_1:66746725-66746744 None:intergenic 45.0%
CCTTATTGCTCTCCCATGAA+TGG + chr2_1:66746722-66746741 Msa0219250:intron 45.0%
AAACCAGCTCTGCCATTCAT+GGG - chr2_1:66746737-66746756 None:intergenic 45.0%
TAAACCAGCTCTGCCATTCA+TGG - chr2_1:66746738-66746757 None:intergenic 45.0%
! GGAAGTGTGTTGGGAAAGAT+AGG - chr2_1:66746950-66746969 None:intergenic 45.0%
TCTTTCCCAACACACTTCCA+CGG + chr2_1:66746951-66746970 Msa0219250:intron 45.0%
TGACTTTGCAACTCACACCT+TGG + chr2_1:66747024-66747043 Msa0219250:intron 45.0%
GACTTTGCAACTCACACCTT+GGG + chr2_1:66747025-66747044 Msa0219250:intron 45.0%
! TTGCACCGTTTCCCTTTTCA+AGG + chr2_1:66747158-66747177 Msa0219250:intron 45.0%
! TGCACCGTTTCCCTTTTCAA+GGG + chr2_1:66747159-66747178 Msa0219250:intron 45.0%
AACCCCCTTGAAAAGGGAAA+CGG - chr2_1:66747166-66747185 None:intergenic 45.0%
TGAGGATAGTACAATGAGGG+GGG - chr2_1:66747285-66747304 None:intergenic 45.0%
TTGCAGTGAGTTTGAGGAAC+TGG + chr2_1:66747461-66747480 Msa0219250:intron 45.0%
TGAGTTTGAGGAACTGGAAG+CGG + chr2_1:66747467-66747486 Msa0219250:CDS 45.0%
!! GTTGATGATGATGGCTCAAG+AGG - chr2_1:66747519-66747538 None:intergenic 45.0%
CTTATGTACCAGGGAACCAA+AGG - chr2_1:66747720-66747739 None:intergenic 45.0%
ATGGAGTTCAAATCCCCTTG+AGG - chr2_1:66747957-66747976 None:intergenic 45.0%
CTCCATCCTATGTGGGTATA+AGG + chr2_1:66747971-66747990 Msa0219250:intron 45.0%
GACCTTATACCCACATAGGA+TGG - chr2_1:66747976-66747995 None:intergenic 45.0%
ACTACTAAGCTGACACCTCA+TGG + chr2_1:66748004-66748023 Msa0219250:intron 45.0%
TGATTGGAAACTACCCGACT+AGG + chr2_1:66748041-66748060 Msa0219250:intron 45.0%
CTGATCAGGTCGTTTATTGC+AGG + chr2_1:66748363-66748382 Msa0219250:intron 45.0%
ATCAGGTCGTTTATTGCAGG+CGG + chr2_1:66748366-66748385 Msa0219250:intron 45.0%
AGAGATGGTATCTGCAAGGT+TGG - chr2_1:66748505-66748524 None:intergenic 45.0%
TGGAAGAGATGGTATCTGCA+AGG - chr2_1:66748509-66748528 None:intergenic 45.0%
GCTTCACAAGATTTGTGGCT+CGG - chr2_1:66748585-66748604 None:intergenic 45.0%
TAGGTATGGATGAAGACACG+GGG - chr2_1:66748654-66748673 None:intergenic 45.0%
GTAGGTATGGATGAAGACAC+GGG - chr2_1:66748655-66748674 None:intergenic 45.0%
TACCAGTAGGATGAAGTGGA+GGG - chr2_1:66748681-66748700 None:intergenic 45.0%
ACAGTACCAGTAGGATGAAG+TGG - chr2_1:66748685-66748704 None:intergenic 45.0%
TTTGGAAGGGGAGAAGAAAC+GGG - chr2_1:66748781-66748800 None:intergenic 45.0%
GTTTGGAAGGGGAGAAGAAA+CGG - chr2_1:66748782-66748801 None:intergenic 45.0%
GAAATAGCTGGGTTTGGAAG+GGG - chr2_1:66748793-66748812 None:intergenic 45.0%
ATGATGAAGGTCCAGATGAG+TGG + chr2_1:66749434-66749453 Msa0219250:three_prime_UTR 45.0%
AGGTCCAGATGAGTGGTTAT+AGG + chr2_1:66749441-66749460 Msa0219250:three_prime_UTR 45.0%
GGTCCAGATGAGTGGTTATA+GGG + chr2_1:66749442-66749461 Msa0219250:three_prime_UTR 45.0%
GTCCAGATGAGTGGTTATAG+GGG + chr2_1:66749443-66749462 Msa0219250:three_prime_UTR 45.0%
!! AATTATAATTATTTAATTAG+TGG + chr2_1:66746500-66746519 Msa0219250:intron 5.0%
!!! TTTTTTTTTTTCTTTTAATA+TGG + chr2_1:66747879-66747898 Msa0219250:intron 5.0%
!!! TTTTTTTTTTCTTTTAATAT+GGG + chr2_1:66747880-66747899 Msa0219250:intron 5.0%
GGGGATTAGGGTTAGGGTTA+GGG - chr2_1:66744254-66744273 None:intergenic 50.0%
TGGGGATTAGGGTTAGGGTT+AGG - chr2_1:66744255-66744274 None:intergenic 50.0%
CTGGCACTATTGAGTAACGG+TGG - chr2_1:66744921-66744940 None:intergenic 50.0%
! GCGCTGGCACTATTGAGTAA+CGG - chr2_1:66744924-66744943 None:intergenic 50.0%
TTTGGTGGAAAACCTCCTGG+GGG + chr2_1:66746002-66746021 Msa0219250:CDS 50.0%
CTTCATACTCGAAATCCCCC+AGG - chr2_1:66746020-66746039 None:intergenic 50.0%
!! CTTTAACTTCGGAGGCACCT+TGG - chr2_1:66746662-66746681 None:intergenic 50.0%
! CAAGGTGCCTCCGAAGTTAA+AGG + chr2_1:66746660-66746679 Msa0219250:CDS 50.0%
TATAGAGACAGAACCGTCCG+TGG - chr2_1:66746971-66746990 None:intergenic 50.0%
!! GCACCGTTTCCCTTTTCAAG+GGG + chr2_1:66747160-66747179 Msa0219250:intron 50.0%
!! CACCGTTTCCCTTTTCAAGG+GGG + chr2_1:66747161-66747180 Msa0219250:intron 50.0%
GATGGGAACCCCCTTGAAAA+GGG - chr2_1:66747172-66747191 None:intergenic 50.0%
AGATGGGAACCCCCTTGAAA+AGG - chr2_1:66747173-66747192 None:intergenic 50.0%
GATAGTACAATGAGGGGGGA+GGG - chr2_1:66747281-66747300 None:intergenic 50.0%
ACTGGAAGCGGTACCAACTA+TGG + chr2_1:66747479-66747498 Msa0219250:CDS 50.0%
GGTACCAACTATGGCAGTCA+TGG + chr2_1:66747488-66747507 Msa0219250:CDS 50.0%
CCATCCATGACTGCCATAGT+TGG - chr2_1:66747495-66747514 None:intergenic 50.0%
CCAACTATGGCAGTCATGGA+TGG + chr2_1:66747492-66747511 Msa0219250:CDS 50.0%
! ACTTGTGTCCTTTGGTTCCC+TGG + chr2_1:66747709-66747728 Msa0219250:intron 50.0%
GAGCACCATATGCTCATCAG+AGG - chr2_1:66748249-66748268 None:intergenic 50.0%
TCGTTTATTGCAGGCGGCTA+TGG + chr2_1:66748372-66748391 Msa0219250:intron 50.0%
CGTTTATTGCAGGCGGCTAT+GGG + chr2_1:66748373-66748392 Msa0219250:intron 50.0%
ACAGGTGTAGCAGCATGAGT+TGG - chr2_1:66748472-66748491 None:intergenic 50.0%
ACTCATGCTGCTACACCTGT+TGG + chr2_1:66748472-66748491 Msa0219250:CDS 50.0%
CTCATGCTGCTACACCTGTT+GGG + chr2_1:66748473-66748492 Msa0219250:CDS 50.0%
GGGGTAGATGTTGGAAGAGA+TGG - chr2_1:66748520-66748539 None:intergenic 50.0%
ATTGCAGCAGAAGAAAGGGG+AGG - chr2_1:66748622-66748641 None:intergenic 50.0%
AGGTATGGATGAAGACACGG+GGG - chr2_1:66748653-66748672 None:intergenic 50.0%
ACCAGTAGGATGAAGTGGAG+GGG - chr2_1:66748680-66748699 None:intergenic 50.0%
GTACCAGTAGGATGAAGTGG+AGG - chr2_1:66748682-66748701 None:intergenic 50.0%
GGTGGAAATGGCTGTAGCAT+TGG - chr2_1:66748733-66748752 None:intergenic 50.0%
GAAGAAACGGGAGCAAGTGA+AGG - chr2_1:66748769-66748788 None:intergenic 50.0%
AAAGGTCCGAGATGCTCTTC+TGG + chr2_1:66748819-66748838 Msa0219250:CDS 50.0%
CACCCCTATAACCACTCATC+TGG - chr2_1:66749448-66749467 None:intergenic 50.0%
!! GAGTGGTTATAGGGGTGCTA+AGG + chr2_1:66749451-66749470 Msa0219250:three_prime_UTR 50.0%
CAATAGTGCCAGCGCCACTA+TGG + chr2_1:66744929-66744948 Msa0219250:intron 55.0%
CATACTCGAAATCCCCCAGG+AGG - chr2_1:66746017-66746036 None:intergenic 55.0%
TGCACATGTGTACGCCTGTG+AGG - chr2_1:66746575-66746594 None:intergenic 55.0%
CAGGCGTACACATGTGCATC+TGG + chr2_1:66746577-66746596 Msa0219250:intron 55.0%
TCTCCCATGAATGGCAGAGC+TGG + chr2_1:66746731-66746750 Msa0219250:intron 55.0%
TCCCAACACACTTCCACGGA+CGG + chr2_1:66746955-66746974 Msa0219250:intron 55.0%
! ACCGTCCGTGGAAGTGTGTT+GGG - chr2_1:66746959-66746978 None:intergenic 55.0%
! AACCGTCCGTGGAAGTGTGT+TGG - chr2_1:66746960-66746979 None:intergenic 55.0%
GGATAGTACAATGAGGGGGG+AGG - chr2_1:66747282-66747301 None:intergenic 55.0%
!! CGAGGAGCGCTTATGTACCA+GGG - chr2_1:66747729-66747748 None:intergenic 55.0%
!! ACGAGGAGCGCTTATGTACC+AGG - chr2_1:66747730-66747749 None:intergenic 55.0%
TTGCAGGCGGCTATGGGTAT+CGG + chr2_1:66748379-66748398 Msa0219250:intron 55.0%
GGTATCTGCAAGGTTGGCAG+TGG - chr2_1:66748499-66748518 None:intergenic 55.0%
GGTGTAAGCGGGGTAGATGT+TGG - chr2_1:66748529-66748548 None:intergenic 55.0%
ATCATGCTGGGGTGTAAGCG+GGG - chr2_1:66748539-66748558 None:intergenic 55.0%
CATCATGCTGGGGTGTAAGC+GGG - chr2_1:66748540-66748559 None:intergenic 55.0%
GCATCATGCTGGGGTGTAAG+CGG - chr2_1:66748541-66748560 None:intergenic 55.0%
!! GACTCAGGAGCATCATGCTG+GGG - chr2_1:66748550-66748569 None:intergenic 55.0%
!! GGACTCAGGAGCATCATGCT+GGG - chr2_1:66748551-66748570 None:intergenic 55.0%
!! TGGACTCAGGAGCATCATGC+TGG - chr2_1:66748552-66748571 None:intergenic 55.0%
GGTATGGATGAAGACACGGG+GGG - chr2_1:66748652-66748671 None:intergenic 55.0%
AAGTGGAGGGGCAGTAGGTA+TGG - chr2_1:66748668-66748687 None:intergenic 55.0%
GGTGGAGTTGGAGGTGGAAA+TGG - chr2_1:66748745-66748764 None:intergenic 55.0%
!! AGTGAAGGTGGTGGAGTTGG+AGG - chr2_1:66748754-66748773 None:intergenic 55.0%
!! GCAAGTGAAGGTGGTGGAGT+TGG - chr2_1:66748757-66748776 None:intergenic 55.0%
GAAACGGGAGCAAGTGAAGG+TGG - chr2_1:66748766-66748785 None:intergenic 55.0%
!! CGAGCACCAGAAGAGCATCT+CGG - chr2_1:66748828-66748847 None:intergenic 55.0%
TGCTCTTCTGGTGCTCGTTC+AGG + chr2_1:66748831-66748850 Msa0219250:CDS 55.0%
TATAGCGGCCATAGTGGCGC+TGG - chr2_1:66744940-66744959 None:intergenic 60.0%
TGCAGGCGGCTATGGGTATC+GGG + chr2_1:66748380-66748399 Msa0219250:intron 60.0%
AAGGTTGGCAGTGGCCCAAC+AGG - chr2_1:66748490-66748509 None:intergenic 60.0%
GGATGAAGTGGAGGGGCAGT+AGG - chr2_1:66748673-66748692 None:intergenic 60.0%
GCCCCTCCACTTCATCCTAC+TGG + chr2_1:66748676-66748695 Msa0219250:CDS 60.0%
!! GAAGGTGGTGGAGTTGGAGG+TGG - chr2_1:66748751-66748770 None:intergenic 60.0%
ACGGGAGCAAGTGAAGGTGG+TGG - chr2_1:66748763-66748782 None:intergenic 60.0%
CGGCTGCTGCTGTTGGACTC+AGG - chr2_1:66748565-66748584 None:intergenic 65.0%
! TGTGGCTCGGCTGCTGCTGT+TGG - chr2_1:66748572-66748591 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 66744180 66749665 66744180 ID=Msa0219250;Name=Msa0219250
chr2_1 mRNA 66744180 66749665 66744180 ID=Msa0219250-mRNA-1;Parent=Msa0219250;Name=Msa0219250-mRNA-1;_AED=0.04;_eAED=0.04;_QI=130|1|1|1|1|1|8|484|367
chr2_1 exon 66744180 66744468 66744180 ID=Msa0219250-mRNA-1:exon:18823;Parent=Msa0219250-mRNA-1
chr2_1 exon 66744552 66744592 66744552 ID=Msa0219250-mRNA-1:exon:18824;Parent=Msa0219250-mRNA-1
chr2_1 exon 66744713 66744762 66744713 ID=Msa0219250-mRNA-1:exon:18825;Parent=Msa0219250-mRNA-1
chr2_1 exon 66745998 66746142 66745998 ID=Msa0219250-mRNA-1:exon:18826;Parent=Msa0219250-mRNA-1
chr2_1 exon 66746642 66746698 66746642 ID=Msa0219250-mRNA-1:exon:18827;Parent=Msa0219250-mRNA-1
chr2_1 exon 66747467 66747593 66747467 ID=Msa0219250-mRNA-1:exon:18828;Parent=Msa0219250-mRNA-1
chr2_1 exon 66748385 66748852 66748385 ID=Msa0219250-mRNA-1:exon:18829;Parent=Msa0219250-mRNA-1
chr2_1 exon 66749125 66749665 66749125 ID=Msa0219250-mRNA-1:exon:18830;Parent=Msa0219250-mRNA-1
chr2_1 five_prime_UTR 66744180 66744309 66744180 ID=Msa0219250-mRNA-1:five_prime_utr;Parent=Msa0219250-mRNA-1
chr2_1 CDS 66744310 66744468 66744310 ID=Msa0219250-mRNA-1:cds;Parent=Msa0219250-mRNA-1
chr2_1 CDS 66744552 66744592 66744552 ID=Msa0219250-mRNA-1:cds;Parent=Msa0219250-mRNA-1
chr2_1 CDS 66744713 66744762 66744713 ID=Msa0219250-mRNA-1:cds;Parent=Msa0219250-mRNA-1
chr2_1 CDS 66745998 66746142 66745998 ID=Msa0219250-mRNA-1:cds;Parent=Msa0219250-mRNA-1
chr2_1 CDS 66746642 66746698 66746642 ID=Msa0219250-mRNA-1:cds;Parent=Msa0219250-mRNA-1
chr2_1 CDS 66747467 66747593 66747467 ID=Msa0219250-mRNA-1:cds;Parent=Msa0219250-mRNA-1
chr2_1 CDS 66748385 66748852 66748385 ID=Msa0219250-mRNA-1:cds;Parent=Msa0219250-mRNA-1
chr2_1 CDS 66749125 66749181 66749125 ID=Msa0219250-mRNA-1:cds;Parent=Msa0219250-mRNA-1
chr2_1 three_prime_UTR 66749182 66749665 66749182 ID=Msa0219250-mRNA-1:three_prime_utr;Parent=Msa0219250-mRNA-1
Gene Sequence

>Msa0219250

ATGTCTCAGAACGGAAAATTGATGCCAAATCTTGACCAACAAAGCACTAAGCTTCTCAATCTCACTGTTCTCCAACGAATTGACCCTTTCGTTGAGGAAATTCTCATTACTGCTGCTCATGTTACATTCTATGAGTTTAACATCGATCTCAGCCAATGGAGTCGTAAGGATGTTGAAGGATCTCTCTTTGTTGTTAAGAGAAATACTCAACCAAGATTTCAGTTTATTGTGATGAATCGTCGCAATACTGAAAATTTGGTGGAAAACCTCCTGGGGGATTTCGAGTATGAAGTTCAGGTTCCATATCTATTGTATAGAAATGCTGCTCAAGAAGTGAATGGTATTTGGTTCTATAATGCTCGCGAATGTGAAGAGGTTGCAAATCTTTTTAGCAGGATTCTTAATGCATATGCCAAGGTGCCTCCGAAGTTAAAGGTCTCATCTACAAAGAGTGAGTTTGAGGAACTGGAAGCGGTACCAACTATGGCAGTCATGGATGGTCCTCTTGAGCCATCATCATCAACTACTTCCAATGTAGCTGATGTTCCTGATGATCCATCCTTTATAAATTTCTTCAGTGCGGCTATGGGTATCGGGAATACTTCAAATGCTCATATCACCGGACAACCTTATCAGTCTTCTGCTACAATTTCTTCTTCTGGGCCAACTCATGCTGCTACACCTGTTGGGCCACTGCCAACCTTGCAGATACCATCTCTTCCAACATCTACCCCGCTTACACCCCAGCATGATGCTCCTGAGTCCAACAGCAGCAGCCGAGCCACAAATCTTGTGAAGCCTTCTTTTTTTGTTCCTCCCCTTTCTTCTGCTGCAATGATGATTCCCCCCGTGTCTTCATCCATACCTACTGCCCCTCCACTTCATCCTACTGGTACTGTACAAGTACAACGACCTTATGGTACTCCAATGCTACAGCCATTTCCACCTCCAACTCCACCACCTTCACTTGCTCCCGTTTCTTCTCCCCTTCCAAACCCAGCTATTTCTAGAGAAAAGGTCCGAGATGCTCTTCTGGTGCTCGTTCAGGACAATCAATTCATTGATATGGTTTATAATGCGCTGCTGAATGCTCATCAATCATGA

Protein sequence

>Msa0219250

MSQNGKLMPNLDQQSTKLLNLTVLQRIDPFVEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEVQVPYLLYRNAAQEVNGIWFYNARECEEVANLFSRILNAYAKVPPKLKVSSTKSEFEELEAVPTMAVMDGPLEPSSSTTSNVADVPDDPSFINFFSAAMGIGNTSNAHITGQPYQSSATISSSGPTHAATPVGPLPTLQIPSLPTSTPLTPQHDAPESNSSSRATNLVKPSFFVPPLSSAAMMIPPVSSSIPTAPPLHPTGTVQVQRPYGTPMLQPFPPPTPPPSLAPVSSPLPNPAISREKVRDALLVLVQDNQFIDMVYNALLNAHQS*