Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477660 | XP_013461985.1 | 98.472 | 458 | 4 | 1 | 1 | 455 | 1 | 458 | 0.0 | 923 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477660 | sp|P28011|AAT1_MEDSA | 99.761 | 418 | 1 | 0 | 38 | 455 | 1 | 418 | 0.0 | 855 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477660 | A0A072VCX2 | 98.472 | 458 | 4 | 1 | 1 | 455 | 1 | 458 | 0.0 | 923 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029700 | Msa0477660 | 0.822379 | 2.445019e-53 | -8.615850e-47 |
| Msa0033970 | Msa0477660 | 0.849322 | 3.482621e-60 | -8.615850e-47 |
| Msa0036560 | Msa0477660 | -0.824175 | 9.307512e-54 | -8.615850e-47 |
| Msa0038910 | Msa0477660 | -0.811710 | 6.109306e-51 | -8.615850e-47 |
| Msa0039890 | Msa0477660 | 0.806874 | 6.653897e-50 | -8.615850e-47 |
| Msa0048920 | Msa0477660 | -0.800569 | 1.355429e-48 | -8.615850e-47 |
| Msa0073970 | Msa0477660 | 0.812173 | 4.843359e-51 | -8.615850e-47 |
| Msa0080020 | Msa0477660 | 0.817759 | 2.791310e-52 | -8.615850e-47 |
| Msa0081920 | Msa0477660 | 0.858363 | 8.674750e-63 | -8.615850e-47 |
| Msa0082240 | Msa0477660 | 0.806189 | 9.279999e-50 | -8.615850e-47 |
| Msa0082410 | Msa0477660 | 0.805514 | 1.286607e-49 | -8.615850e-47 |
| Msa0110240 | Msa0477660 | 0.819419 | 1.173064e-52 | -8.615850e-47 |
| Msa0113910 | Msa0477660 | -0.802678 | 5.005054e-49 | -8.615850e-47 |
| Msa0121970 | Msa0477660 | 0.813950 | 1.974634e-51 | -8.615850e-47 |
| Msa0124960 | Msa0477660 | 0.814093 | 1.836320e-51 | -8.615850e-47 |
| Msa0128030 | Msa0477660 | 0.860994 | 1.400960e-63 | -8.615850e-47 |
| Msa0128970 | Msa0477660 | 0.803625 | 3.187514e-49 | -8.615850e-47 |
| Msa0138340 | Msa0477660 | -0.818909 | 1.532513e-52 | -8.615850e-47 |
| Msa0139280 | Msa0477660 | -0.808806 | 2.584820e-50 | -8.615850e-47 |
| Msa0147960 | Msa0477660 | -0.819614 | 1.058682e-52 | -8.615850e-47 |
| Msa0154730 | Msa0477660 | 0.819972 | 8.770613e-53 | -8.615850e-47 |
| Msa0166620 | Msa0477660 | 0.819886 | 9.175261e-53 | -8.615850e-47 |
| Msa0172820 | Msa0477660 | -0.805395 | 1.362868e-49 | -8.615850e-47 |
| Msa0174810 | Msa0477660 | 0.838963 | 2.103733e-57 | -8.615850e-47 |
| Msa0180820 | Msa0477660 | 0.816603 | 5.079981e-52 | -8.615850e-47 |
| Msa0181140 | Msa0477660 | 0.810142 | 1.335271e-50 | -8.615850e-47 |
| Msa0181690 | Msa0477660 | -0.806944 | 6.431155e-50 | -8.615850e-47 |
| Msa0192890 | Msa0477660 | 0.808774 | 2.625199e-50 | -8.615850e-47 |
| Msa0207150 | Msa0477660 | -0.801224 | 9.958000e-49 | -8.615850e-47 |
| Msa0210850 | Msa0477660 | 0.811365 | 7.262896e-51 | -8.615850e-47 |
| Msa0236100 | Msa0477660 | -0.814537 | 1.464590e-51 | -8.615850e-47 |
| Msa0238140 | Msa0477660 | 0.800751 | 1.244019e-48 | -8.615850e-47 |
| Msa0369660 | Msa0477660 | 0.839761 | 1.306272e-57 | -8.615850e-47 |
| Msa0381470 | Msa0477660 | 0.828526 | 8.562632e-55 | -8.615850e-47 |
| Msa0383110 | Msa0477660 | -0.806134 | 9.531552e-50 | -8.615850e-47 |
| Msa0383460 | Msa0477660 | 0.801749 | 7.773781e-49 | -8.615850e-47 |
| Msa0387300 | Msa0477660 | 0.982182 | 1.937018e-154 | -8.615850e-47 |
| Msa0409000 | Msa0477660 | -0.808263 | 3.375767e-50 | -8.615850e-47 |
| Msa0416040 | Msa0477660 | 0.806948 | 6.419332e-50 | -8.615850e-47 |
| Msa0434140 | Msa0477660 | 0.986267 | 3.206066e-166 | -8.615850e-47 |
| Msa0437460 | Msa0477660 | 0.812621 | 3.867374e-51 | -8.615850e-47 |
| Msa0455830 | Msa0477660 | 0.826170 | 3.142239e-54 | -8.615850e-47 |
| Msa0463890 | Msa0477660 | 0.820458 | 6.786525e-53 | -8.615850e-47 |
| Msa0465420 | Msa0477660 | 0.809023 | 2.322376e-50 | -8.615850e-47 |
| Msa0477660 | Msa0480770 | 0.820756 | 5.798686e-53 | -8.615850e-47 |
| Msa0477660 | Msa0497680 | 0.803935 | 2.748634e-49 | -8.615850e-47 |
| Msa0477660 | Msa0511280 | 0.807433 | 5.066930e-50 | -8.615850e-47 |
| Msa0477660 | Msa0511380 | 0.814568 | 1.441800e-51 | -8.615850e-47 |
| Msa0477660 | Msa0512430 | -0.808795 | 2.598236e-50 | -8.615850e-47 |
| Msa0477660 | Msa0518720 | -0.803640 | 3.166200e-49 | -8.615850e-47 |
| Msa0477660 | Msa0521720 | 0.999319 | 6.889380e-303 | -8.615850e-47 |
| Msa0477660 | Msa0524570 | -0.813356 | 2.667958e-51 | -8.615850e-47 |
| Msa0477660 | Msa0527210 | -0.814542 | 1.460801e-51 | -8.615850e-47 |
| Msa0477660 | Msa0611300 | -0.800907 | 1.156498e-48 | -8.615850e-47 |
| Msa0477660 | Msa0621870 | -0.811103 | 8.276926e-51 | -8.615850e-47 |
| Msa0477660 | Msa0652700 | 0.822372 | 2.453768e-53 | -8.615850e-47 |
| Msa0477660 | Msa0659590 | -0.801642 | 8.178040e-49 | -8.615850e-47 |
| Msa0477660 | Msa0667240 | 0.800380 | 1.481050e-48 | -8.615850e-47 |
| Msa0477660 | Msa0677590 | -0.811017 | 8.640802e-51 | -8.615850e-47 |
| Msa0477660 | Msa0706130 | -0.801634 | 8.207279e-49 | -8.615850e-47 |
| Msa0477660 | Msa0721260 | 0.809749 | 1.622600e-50 | -8.615850e-47 |
| Msa0477660 | Msa0735340 | 0.805736 | 1.155600e-49 | -8.615850e-47 |
| Msa0477660 | Msa0749500 | 0.830383 | 3.029691e-55 | -8.615850e-47 |
| Msa0477660 | Msa0749510 | 0.837128 | 6.238234e-57 | -8.615850e-47 |
| Msa0477660 | Msa0753410 | 0.806262 | 8.961418e-50 | -8.615850e-47 |
| Msa0477660 | Msa0777210 | 0.807165 | 5.776188e-50 | -8.615850e-47 |
| Msa0477660 | Msa0793910 | 0.829890 | 3.995609e-55 | -8.615850e-47 |
| Msa0477660 | Msa0807170 | -0.801035 | 1.088806e-48 | -8.615850e-47 |
| Msa0477660 | Msa0814350 | 0.808501 | 3.002402e-50 | -8.615850e-47 |
| Msa0477660 | Msa0831430 | 0.832078 | 1.160762e-55 | -8.615850e-47 |
| Msa0477660 | Msa0833150 | -0.833520 | 5.087760e-56 | -8.615850e-47 |
| Msa0477660 | Msa0841550 | 0.803352 | 3.631682e-49 | -8.615850e-47 |
| Msa0477660 | Msa0856790 | -0.804846 | 1.775687e-49 | -8.615850e-47 |
| Msa0477660 | Msa0866320 | -0.804372 | 2.229826e-49 | -8.615850e-47 |
| Msa0477660 | Msa0945230 | 0.820000 | 8.642519e-53 | -8.615850e-47 |
| Msa0477660 | Msa0947420 | 0.828467 | 8.845454e-55 | -8.615850e-47 |
| Msa0477660 | Msa0973000 | 0.803877 | 2.826687e-49 | -8.615850e-47 |
| Msa0477660 | Msa0974570 | -0.819167 | 1.338967e-52 | -8.615850e-47 |
| Msa0477660 | Msa0979050 | 0.808259 | 3.381579e-50 | -8.615850e-47 |
| Msa0477660 | Msa1039650 | 0.818654 | 1.750901e-52 | -8.615850e-47 |
| Msa0477660 | Msa1040250 | 0.800336 | 1.511978e-48 | -8.615850e-47 |
| Msa0477660 | Msa1055490 | -0.802161 | 6.395955e-49 | -8.615850e-47 |
| Msa0477660 | Msa1084340 | -0.811530 | 6.686613e-51 | -8.615850e-47 |
| Msa0477660 | Msa1106760 | -0.824172 | 9.321158e-54 | -8.615850e-47 |
| Msa0477660 | Msa1112040 | 0.810588 | 1.070024e-50 | -8.615850e-47 |
| Msa0477660 | Msa1120320 | 0.829414 | 5.216815e-55 | -8.615850e-47 |
| Msa0477660 | Msa1126980 | -0.814076 | 1.851660e-51 | -8.615850e-47 |
| Msa0477660 | Msa1154310 | 0.805163 | 1.524031e-49 | -8.615850e-47 |
| Msa0477660 | Msa1157200 | 0.800047 | 1.730729e-48 | -8.615850e-47 |
| Msa0477660 | Msa1174450 | 0.845581 | 3.714123e-59 | -8.615850e-47 |
| Msa0477660 | Msa1187160 | 0.809399 | 1.929152e-50 | -8.615850e-47 |
| Msa0477660 | Msa1213860 | 0.804062 | 2.586450e-49 | -8.615850e-47 |
| Msa0477660 | Msa1223060 | -0.813997 | 1.927771e-51 | -8.615850e-47 |
| Msa0477660 | Msa1223600 | -0.817693 | 2.888471e-52 | -8.615850e-47 |
| Msa0477660 | Msa1225280 | -0.800889 | 1.166256e-48 | -8.615850e-47 |
| Msa0477660 | Msa1235960 | -0.802580 | 5.245674e-49 | -8.615850e-47 |
| Msa0477660 | Msa1235990 | -0.805486 | 1.304087e-49 | -8.615850e-47 |
| Msa0477660 | Msa1251500 | 0.812923 | 3.320632e-51 | -8.615850e-47 |
| Msa0477660 | Msa1265990 | -0.809754 | 1.618365e-50 | -8.615850e-47 |
| Msa0477660 | Msa1267080 | 0.802064 | 6.698892e-49 | -8.615850e-47 |
| Msa0477660 | Msa1269370 | -0.803316 | 3.695494e-49 | -8.615850e-47 |
| Msa0477660 | Msa1276400 | 0.802253 | 6.125454e-49 | -8.615850e-47 |
| Msa0477660 | Msa1282640 | 0.819492 | 1.128708e-52 | -8.615850e-47 |
| Msa0477660 | Msa1314810 | 0.842215 | 2.963201e-58 | -8.615850e-47 |
| Msa0477660 | Msa1316090 | -0.814321 | 1.635207e-51 | -8.615850e-47 |
| Msa0477660 | Msa1321840 | 0.813167 | 2.936074e-51 | -8.615850e-47 |
| Msa0477660 | Msa1339520 | -0.802540 | 5.343820e-49 | -8.615850e-47 |
| Msa0477660 | Msa1357090 | -0.813029 | 3.148115e-51 | -8.615850e-47 |
| Msa0477660 | Msa1370820 | 0.805673 | 1.191426e-49 | -8.615850e-47 |
| Msa0477660 | Msa1371540 | -0.811607 | 6.434389e-51 | -8.615850e-47 |
| Msa0477660 | Msa1375730 | 0.800574 | 1.352396e-48 | -8.615850e-47 |
| Msa0477660 | Msa1398110 | 0.808609 | 2.847532e-50 | -8.615850e-47 |
| Msa0477660 | Msa1412810 | -0.806755 | 7.050553e-50 | -8.615850e-47 |
| Msa0477660 | Msa1426690 | -0.805916 | 1.059254e-49 | -8.615850e-47 |
| Msa0477660 | Msa1449510 | -0.811173 | 7.992072e-51 | -8.615850e-47 |
| Msa0267230 | Msa0477660 | 0.805044 | 1.614468e-49 | -8.615850e-47 |
| Msa0268070 | Msa0477660 | 0.804408 | 2.191913e-49 | -8.615850e-47 |
| Msa0274000 | Msa0477660 | -0.804293 | 2.316314e-49 | -8.615850e-47 |
| Msa0274890 | Msa0477660 | -0.811507 | 6.761871e-51 | -8.615850e-47 |
| Msa0275570 | Msa0477660 | 0.804935 | 1.701538e-49 | -8.615850e-47 |
| Msa0297320 | Msa0477660 | -0.801978 | 6.976021e-49 | -8.615850e-47 |
| Msa0314620 | Msa0477660 | -0.802806 | 4.711528e-49 | -8.615850e-47 |
| Msa0315010 | Msa0477660 | -0.806578 | 7.685777e-50 | -8.615850e-47 |
| Msa0319060 | Msa0477660 | -0.837175 | 6.069661e-57 | -8.615850e-47 |
| Msa0332790 | Msa0477660 | 0.810058 | 1.392359e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477660 | MtrunA17_Chr3g0139821 | 98.472 | 458 | 4 | 1 | 1 | 455 | 1 | 458 | 0.0 | 923 |
| Msa0477660 | MtrunA17_Chr1g0149721 | 54.436 | 417 | 188 | 2 | 32 | 447 | 42 | 457 | 1.73e-164 | 471 |
| Msa0477660 | MtrunA17_Chr4g0041371 | 51.005 | 398 | 193 | 1 | 53 | 450 | 25 | 420 | 6.26e-146 | 423 |
| Msa0477660 | MtrunA17_Chr4g0041351 | 53.448 | 232 | 108 | 0 | 219 | 450 | 3 | 234 | 2.64e-88 | 269 |
| Msa0477660 | MtrunA17_Chr4g0041361 | 41.481 | 135 | 76 | 2 | 53 | 186 | 20 | 152 | 4.19e-26 | 103 |
| Msa0477660 | MtrunA17_Chr4g0005811 | 50.000 | 54 | 27 | 0 | 325 | 378 | 23 | 76 | 4.46e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0477660 | AT5G11520.1 | 79.310 | 435 | 90 | 0 | 19 | 453 | 13 | 447 | 0.0 | 743 |
| Msa0477660 | AT5G19550.1 | 82.921 | 404 | 69 | 0 | 52 | 455 | 2 | 405 | 0.0 | 717 |
| Msa0477660 | AT1G62800.2 | 72.772 | 404 | 110 | 0 | 52 | 455 | 2 | 405 | 0.0 | 641 |
| Msa0477660 | AT1G62800.1 | 72.277 | 404 | 110 | 1 | 52 | 455 | 2 | 403 | 0.0 | 633 |
| Msa0477660 | AT1G62800.3 | 70.710 | 338 | 99 | 0 | 52 | 389 | 2 | 339 | 0.0 | 526 |
| Msa0477660 | AT4G31990.1 | 54.545 | 396 | 178 | 2 | 53 | 447 | 51 | 445 | 1.12e-160 | 462 |
| Msa0477660 | AT4G31990.2 | 54.545 | 396 | 178 | 2 | 53 | 447 | 51 | 445 | 1.12e-160 | 462 |
| Msa0477660 | AT4G31990.4 | 54.545 | 396 | 178 | 2 | 53 | 447 | 46 | 440 | 1.22e-160 | 461 |
| Msa0477660 | AT4G31990.3 | 54.545 | 396 | 178 | 2 | 53 | 447 | 51 | 445 | 2.30e-160 | 461 |
| Msa0477660 | AT2G30970.1 | 52.174 | 391 | 185 | 1 | 61 | 451 | 39 | 427 | 2.61e-147 | 427 |
| Msa0477660 | AT2G30970.2 | 52.174 | 391 | 185 | 1 | 61 | 451 | 39 | 427 | 2.61e-147 | 427 |
Find 160 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAATCTTTGTATGGTTT+TGG | 0.106318 | 3_3:-81972839 | Msa0477660:three_prime_UTR |
| AGGAATGTATTCTTAATTTA+AGG | 0.133082 | 3_3:-81972746 | Msa0477660:three_prime_UTR |
| ACACCCAAGTTGAGCTTAAT+TGG | 0.150989 | 3_3:+81976853 | None:intergenic |
| GCGAAGAACATGGGTCTTTA+TGG | 0.189310 | 3_3:-81974769 | Msa0477660:CDS |
| CAAGAAAGAAAGAAACTTTA+TGG | 0.229625 | 3_3:+81977654 | None:intergenic |
| ATGTATTATTTCCTTGGTTT+TGG | 0.230843 | 3_3:+81977547 | None:intergenic |
| GTTTAAAATTAAATTTAAAT+AGG | 0.249952 | 3_3:-81977572 | Msa0477660:five_prime_UTR |
| TTTCTTTGACAGTGCTTATC+AGG | 0.256759 | 3_3:-81975133 | Msa0477660:intron |
| AGTCACATTATCAAGCAAAT+TGG | 0.295698 | 3_3:-81973939 | Msa0477660:CDS |
| ACCACTGTTCAAGGCTTATC+TGG | 0.296478 | 3_3:-81975725 | Msa0477660:CDS |
| TTGAAAACTCTCTCTATATA+TGG | 0.304585 | 3_3:+81977679 | None:intergenic |
| AGCCAGATGTGGGACTGTTT+TGG | 0.314178 | 3_3:+81973180 | None:intergenic |
| AACGACTCTGTCGTAGGATT+TGG | 0.314966 | 3_3:-81972895 | Msa0477660:three_prime_UTR |
| TTTCCTTGTACATCTGTTGC+AGG | 0.318165 | 3_3:-81972960 | Msa0477660:three_prime_UTR |
| GCCCTGCTATTCAAGAGAAC+AGG | 0.323064 | 3_3:-81975751 | Msa0477660:CDS |
| AAGTCAAGCCCTCGTGTTGC+TGG | 0.342959 | 3_3:+81975454 | None:intergenic |
| CATCAGATGTCAGGTATATA+TGG | 0.350575 | 3_3:+81973859 | None:intergenic |
| TATTCTATGTATTATTTCCT+TGG | 0.356130 | 3_3:+81977541 | None:intergenic |
| GATCTTGGTTCTGCCCCATC+TGG | 0.359579 | 3_3:-81975264 | Msa0477660:CDS |
| AATAAAGGTTTCATTGTTGA+TGG | 0.361569 | 3_3:+81973059 | None:intergenic |
| TACTCAAGTCCTCCTATTCA+TGG | 0.370617 | 3_3:-81974403 | Msa0477660:CDS |
| AAGGAGTATATTCCAATTGT+TGG | 0.372264 | 3_3:-81976033 | Msa0477660:CDS |
| TGTACAAGGAAAGTTCTCTA+TGG | 0.378140 | 3_3:+81972971 | None:intergenic |
| TGCTGATGGTGGAGAATTGC+TGG | 0.380748 | 3_3:-81974806 | Msa0477660:CDS |
| ACAGGACTTCTTGAGGATCT+TGG | 0.382872 | 3_3:-81975279 | Msa0477660:intron |
| TATACTTGCCAACACCTACT+TGG | 0.385684 | 3_3:-81975540 | Msa0477660:CDS |
| GTACTGGTTCGCTAAGAGTT+GGG | 0.400671 | 3_3:-81975703 | Msa0477660:CDS |
| AAGAGTCTCAAATCTTTGTA+TGG | 0.405439 | 3_3:-81972845 | Msa0477660:three_prime_UTR |
| CACCCAAGTTGAGCTTAATT+GGG | 0.413455 | 3_3:+81976854 | None:intergenic |
| GGAATGTATTCTTAATTTAA+GGG | 0.415133 | 3_3:-81972745 | Msa0477660:three_prime_UTR |
| TATTTCCTATGAGAACTTAA+CGG | 0.421876 | 3_3:+81972931 | None:intergenic |
| TATGGAGTAATGAATTTGTT+TGG | 0.425873 | 3_3:+81977697 | None:intergenic |
| CTCCAAAACAGTCCCACATC+TGG | 0.425931 | 3_3:-81973182 | Msa0477660:CDS |
| ATTGGAATGTTTACTTTCAC+AGG | 0.428060 | 3_3:-81973921 | Msa0477660:CDS |
| ATCTTATCGCATTCTTACCT+TGG | 0.428749 | 3_3:+81977825 | None:intergenic |
| GTTCAAGGCTTATCTGGTAC+TGG | 0.432196 | 3_3:-81975719 | Msa0477660:CDS |
| ACACCGAGGATAGGATCTTC+AGG | 0.432488 | 3_3:+81977327 | None:intergenic |
| ATACTTGCCAACACCTACTT+GGG | 0.432758 | 3_3:-81975539 | Msa0477660:CDS |
| AAGTTGAGCTTAATTGGGCT+TGG | 0.436518 | 3_3:+81976859 | None:intergenic |
| AGGAGTATATTCCAATTGTT+GGG | 0.451682 | 3_3:-81976032 | Msa0477660:CDS |
| TGCAGGAGGATTAGCATGGC+TGG | 0.453349 | 3_3:-81973211 | Msa0477660:intron |
| AACAGGGTTACCACTGTTCA+AGG | 0.453722 | 3_3:-81975734 | Msa0477660:CDS |
| GTAATGAATTTGTTTGGTTG+TGG | 0.455458 | 3_3:+81977703 | None:intergenic |
| GTTGTTGATTCGAGAATAAC+CGG | 0.456808 | 3_3:+81977501 | None:intergenic |
| ACCCTGTTCTCTTGAATAGC+AGG | 0.458243 | 3_3:+81975749 | None:intergenic |
| GTTCGTTTGTTTGTTGCTGA+TGG | 0.463816 | 3_3:-81974820 | Msa0477660:CDS |
| GTTTCCTCTTACAAAAGAAA+AGG | 0.465093 | 3_3:-81972808 | Msa0477660:three_prime_UTR |
| TGATCCAACGCTTGAACAAT+GGG | 0.468112 | 3_3:-81975196 | Msa0477660:CDS |
| CCATGTTCTTCGCATAACTC+TGG | 0.469261 | 3_3:+81974779 | None:intergenic |
| AAATCAGCGAGCCCAACAAT+TGG | 0.471038 | 3_3:+81976021 | None:intergenic |
| ACACGAGGGCTTGACTTTCA+AGG | 0.475131 | 3_3:-81975448 | Msa0477660:intron |
| CATATATACCTGACATCTGA+TGG | 0.476268 | 3_3:-81973858 | Msa0477660:CDS |
| TGACTGGACTATTGAGTTGA+AGG | 0.476617 | 3_3:-81974257 | Msa0477660:CDS |
| ACAATGGATGCACCATGAAT+AGG | 0.476661 | 3_3:+81974391 | None:intergenic |
| CATTGAAATTTAAGCAACTC+GGG | 0.476742 | 3_3:+81973135 | None:intergenic |
| TGCTCCCATTGTTCAAGCGT+TGG | 0.479098 | 3_3:+81975192 | None:intergenic |
| GGTACTGGTTCGCTAAGAGT+TGG | 0.481361 | 3_3:-81975704 | Msa0477660:CDS |
| GTCAAGATGGAAACTTGCTC+AGG | 0.481636 | 3_3:+81973891 | None:intergenic |
| AATAGGAGGACTTGAGTACA+TGG | 0.483790 | 3_3:+81974408 | None:intergenic |
| GCCAACTGAAACTTGTGATT+AGG | 0.484457 | 3_3:-81974432 | Msa0477660:CDS |
| AATTTAAGGGTTTGACATTG+TGG | 0.484882 | 3_3:-81972732 | Msa0477660:three_prime_UTR |
| TCAGGGATTTGTACAATGAC+TGG | 0.487365 | 3_3:-81974273 | Msa0477660:intron |
| ATGGTACTCTTTAGTCAAGA+TGG | 0.489731 | 3_3:+81973878 | None:intergenic |
| CGTTAACGATCAAAATCAAA+TGG | 0.490670 | 3_3:-81977418 | Msa0477660:CDS |
| TTGATCCAACGCTTGAACAA+TGG | 0.495724 | 3_3:-81975197 | Msa0477660:CDS |
| CTAACATGTCATTCAATAGT+TGG | 0.496646 | 3_3:+81976159 | None:intergenic |
| GTACAAGGAAAGTTCTCTAT+GGG | 0.497001 | 3_3:+81972972 | None:intergenic |
| GAATAGGTACACCAGGTGAT+TGG | 0.497772 | 3_3:-81973962 | Msa0477660:intron |
| TCAGCAACAAACAAACGAAC+AGG | 0.500179 | 3_3:+81974823 | None:intergenic |
| TCAGAAGAAGCGGTTGGAGA+AGG | 0.502905 | 3_3:+81977378 | None:intergenic |
| TACTGGTTCGCTAAGAGTTG+GGG | 0.504319 | 3_3:-81975702 | Msa0477660:CDS |
| GAGAGCCGTTAAGTTCTCAT+AGG | 0.505623 | 3_3:-81972936 | Msa0477660:three_prime_UTR |
| TGTCTTACCCATCAGATGTC+AGG | 0.505685 | 3_3:+81973850 | None:intergenic |
| TCACTACCTGTCCTTGAGAA+TGG | 0.510089 | 3_3:+81974363 | None:intergenic |
| GACACGTGATAACAATAAGA+AGG | 0.512866 | 3_3:-81977739 | Msa0477660:five_prime_UTR |
| ATTCTTCTTCACCTGATCGC+AGG | 0.513737 | 3_3:-81977470 | Msa0477660:CDS |
| ATAAAGGTTTCATTGTTGAT+GGG | 0.514495 | 3_3:+81973060 | None:intergenic |
| TTCCTTGTACATCTGTTGCA+GGG | 0.516268 | 3_3:-81972959 | Msa0477660:three_prime_UTR |
| AAGCCCAATTAAGCTCAACT+TGG | 0.516784 | 3_3:-81976857 | Msa0477660:CDS |
| CGTTTGTTTGTTGCTGATGG+TGG | 0.521870 | 3_3:-81974817 | Msa0477660:CDS |
| CCAGAGTTATGCGAAGAACA+TGG | 0.522554 | 3_3:-81974779 | Msa0477660:CDS |
| CTTGAGAATGGCGGCCACAA+TGG | 0.525791 | 3_3:+81974375 | None:intergenic |
| ATTAAGCTCAACTTGGGTGT+TGG | 0.529955 | 3_3:-81976850 | Msa0477660:CDS |
| ATAGTGTTTAGCCTGCGATC+AGG | 0.535819 | 3_3:+81977459 | None:intergenic |
| ACGAACGAGATGAGCGAAGA+CGG | 0.543404 | 3_3:+81977353 | None:intergenic |
| ATCTGCATCTAGACTTCCAC+TGG | 0.543479 | 3_3:+81974852 | None:intergenic |
| TTATCAATTCATCCCCGTGA+TGG | 0.545641 | 3_3:-81973108 | Msa0477660:three_prime_UTR |
| CATGTTCTTCGCATAACTCT+GGG | 0.545873 | 3_3:+81974780 | None:intergenic |
| TGGCCGCCATTCTCAAGGAC+AGG | 0.547950 | 3_3:-81974369 | Msa0477660:intron |
| ATAAGATTCTAACCTCAGTT+CGG | 0.549064 | 3_3:+81976821 | None:intergenic |
| TGATAAGCACTGTCAAAGAA+AGG | 0.550216 | 3_3:+81975135 | None:intergenic |
| TTTGTATGATTGCCCCAAGT+AGG | 0.551425 | 3_3:+81975526 | None:intergenic |
| AGTCAGCGGATGTTTCAAGC+AGG | 0.552000 | 3_3:-81974462 | Msa0477660:CDS |
| GTTCCTTACAGGACTTCTTG+AGG | 0.552621 | 3_3:-81975286 | Msa0477660:intron |
| ATACTCTCGTGAACTTTATG+CGG | 0.553386 | 3_3:+81977624 | None:intergenic |
| ACATTGAAATTTAAGCAACT+CGG | 0.554651 | 3_3:+81973134 | None:intergenic |
| GCCTAATCACAAGTTTCAGT+TGG | 0.558972 | 3_3:+81974431 | None:intergenic |
| TCAATTCATCCCCGTGATGG+TGG | 0.561810 | 3_3:-81973105 | Msa0477660:three_prime_UTR |
| GCAAAACAACAGATCCAGAT+GGG | 0.564621 | 3_3:+81975250 | None:intergenic |
| ATGTACTAGTAGTAGTCGGC+GGG | 0.565587 | 3_3:+81977792 | None:intergenic |
| ACACGTGATAACAATAAGAA+GGG | 0.569930 | 3_3:-81977738 | Msa0477660:five_prime_UTR |
| TTTGATGCTTTACGTGCTAG+AGG | 0.574452 | 3_3:-81974196 | Msa0477660:intron |
| ACGGAATCAGAAGAAGCGGT+TGG | 0.574811 | 3_3:+81977372 | None:intergenic |
| TGAAATGCTTACAATGCTCA+AGG | 0.575001 | 3_3:+81974732 | None:intergenic |
| TATATACAGCATGCGCCCAC+CGG | 0.578843 | 3_3:-81977520 | Msa0477660:exon |
| CATTGTGGCCGCCATTCTCA+AGG | 0.579863 | 3_3:-81974374 | Msa0477660:CDS |
| GGAAGGTAAACCCCTTGTGT+TGG | 0.582281 | 3_3:-81976204 | Msa0477660:CDS |
| GCTCCTGAAGATCCTATCCT+CGG | 0.583735 | 3_3:-81977330 | Msa0477660:CDS |
| TGCAATTGAATAGGTACACC+AGG | 0.584729 | 3_3:-81973969 | Msa0477660:intron |
| CCCTGCTATTCAAGAGAACA+GGG | 0.585827 | 3_3:-81975750 | Msa0477660:CDS |
| TACTATGCTCCAGCAACACG+AGG | 0.591280 | 3_3:-81975463 | Msa0477660:CDS |
| AGCGTTGGATCAACACCAGT+AGG | 0.595444 | 3_3:+81975207 | None:intergenic |
| GGTCTTTATGGTGAACGTGT+TGG | 0.597249 | 3_3:-81974757 | Msa0477660:CDS |
| AGCCCAATTAAGCTCAACTT+GGG | 0.600473 | 3_3:-81976856 | Msa0477660:CDS |
| TCCTTGTACATCTGTTGCAG+GGG | 0.601080 | 3_3:-81972958 | Msa0477660:three_prime_UTR |
| CCCTGTTCTCTTGAATAGCA+GGG | 0.601948 | 3_3:+81975750 | None:intergenic |
| GCCTCACAACATCCAACACA+AGG | 0.602594 | 3_3:+81976192 | None:intergenic |
| ATATATACCTGACATCTGAT+GGG | 0.603581 | 3_3:-81973857 | Msa0477660:intron |
| TCCCCTGCAACAGATGTACA+AGG | 0.603932 | 3_3:+81972957 | None:intergenic |
| GCATGTGCACATAACCCTAC+TGG | 0.605334 | 3_3:-81975222 | Msa0477660:CDS |
| AACAAACATACACCGAGGAT+AGG | 0.605565 | 3_3:+81977318 | None:intergenic |
| ACCAGATAAGCCTTGAACAG+TGG | 0.611040 | 3_3:+81975724 | None:intergenic |
| GTCAGCGGATGTTTCAAGCA+GGG | 0.615517 | 3_3:-81974461 | Msa0477660:CDS |
| TATTCATGGTGCATCCATTG+TGG | 0.615918 | 3_3:-81974389 | Msa0477660:CDS |
| AGCAAAACAACAGATCCAGA+TGG | 0.618409 | 3_3:+81975249 | None:intergenic |
| ACAAGTTGAAGAGAGAAGAA+CGG | 0.618701 | 3_3:-81977851 | None:intergenic |
| GACTATTGAGTTGAAGGCAA+TGG | 0.618768 | 3_3:-81974251 | Msa0477660:CDS |
| CAGAGTTATGCGAAGAACAT+GGG | 0.621421 | 3_3:-81974778 | Msa0477660:CDS |
| ATGGATGCACCATGAATAGG+AGG | 0.622449 | 3_3:+81974394 | None:intergenic |
| TTGGAATGTTTACTTTCACA+GGG | 0.622534 | 3_3:-81973920 | Msa0477660:CDS |
| GCGTTGGATCAACACCAGTA+GGG | 0.625083 | 3_3:+81975208 | None:intergenic |
| TATCATGTACTAGTAGTAGT+CGG | 0.626705 | 3_3:+81977788 | None:intergenic |
| TGTATTGCATCAGCCAGATG+TGG | 0.629141 | 3_3:+81973169 | None:intergenic |
| ATTGTGCAGGAGGATTAGCA+TGG | 0.631015 | 3_3:-81973215 | Msa0477660:intron |
| TCCCCAGGTCAGCAAGTCAG+CGG | 0.637569 | 3_3:-81974476 | Msa0477660:intron |
| ACAAGGAAAGTTCTCTATGG+GGG | 0.640003 | 3_3:+81972974 | None:intergenic |
| GTATTGCATCAGCCAGATGT+GGG | 0.644231 | 3_3:+81973170 | None:intergenic |
| CATGTACTAGTAGTAGTCGG+CGG | 0.644931 | 3_3:+81977791 | None:intergenic |
| GAAGACGGAATCAGAAGAAG+CGG | 0.647565 | 3_3:+81977368 | None:intergenic |
| CCCTTGTGTTGGATGTTGTG+AGG | 0.649198 | 3_3:-81976193 | Msa0477660:CDS |
| CAAGGAAAGTTCTCTATGGG+GGG | 0.649471 | 3_3:+81972975 | None:intergenic |
| GGTAACTGTCGCTTACAACA+AGG | 0.650998 | 3_3:-81976884 | Msa0477660:CDS |
| TTGATTCGAGAATAACCGGT+GGG | 0.652226 | 3_3:+81977505 | None:intergenic |
| TACTTGGGGCAATCATACAA+AGG | 0.652701 | 3_3:-81975524 | Msa0477660:CDS |
| AGAGAGAAGAACGGAAACCA+AGG | 0.661981 | 3_3:-81977842 | Msa0477660:five_prime_UTR |
| CTCACAACATCCAACACAAG+GGG | 0.662888 | 3_3:+81976194 | None:intergenic |
| TGATTGCCCCAAGTAGGTGT+TGG | 0.664181 | 3_3:+81975532 | None:intergenic |
| TACAAGGAAAGTTCTCTATG+GGG | 0.668083 | 3_3:+81972973 | None:intergenic |
| TACTTGCCAACACCTACTTG+GGG | 0.669923 | 3_3:-81975538 | Msa0477660:CDS |
| TGTTGGTGCTTACCGAACTG+AGG | 0.670501 | 3_3:-81976833 | Msa0477660:intron |
| CACGTGATAACAATAAGAAG+GGG | 0.677453 | 3_3:-81977737 | Msa0477660:five_prime_UTR |
| TTAAATAGGAACCAAAACCA+AGG | 0.677482 | 3_3:-81977558 | Msa0477660:five_prime_UTR |
| ATAATGTGACTCCAATCACC+TGG | 0.679037 | 3_3:+81973951 | None:intergenic |
| CCTCACAACATCCAACACAA+GGG | 0.691571 | 3_3:+81976193 | None:intergenic |
| ACTGGTTCGCTAAGAGTTGG+GGG | 0.694356 | 3_3:-81975701 | Msa0477660:CDS |
| CTACCTGTCCTTGAGAATGG+CGG | 0.699592 | 3_3:+81974366 | None:intergenic |
| GTTGATTCGAGAATAACCGG+TGG | 0.704516 | 3_3:+81977504 | None:intergenic |
| ACTATGCTCCAGCAACACGA+GGG | 0.711939 | 3_3:-81975462 | Msa0477660:CDS |
| CAAAACAACAGATCCAGATG+GGG | 0.713598 | 3_3:+81975251 | None:intergenic |
| ATAGGAGGACTTGAGTACAT+GGG | 0.714033 | 3_3:+81974409 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAACAG+AGG | + | chr3_3:81973617-81973636 | None:intergenic | 10.0% |
| !!! | TTTTTTAAATTATTATGCAT+TGG | + | chr3_3:81973837-81973856 | None:intergenic | 10.0% |
| !! | ATGCATAATAATTTAAAAAA+TGG | - | chr3_3:81973837-81973856 | Msa0477660:intron | 10.0% |
| !! | TTAGTTAAAAAAATATAAAG+GGG | + | chr3_3:81974934-81974953 | None:intergenic | 10.0% |
| !!! | AAGAATTTATTTTGTTATTA+AGG | - | chr3_3:81976982-81977001 | Msa0477660:intron | 10.0% |
| !!! | AGAATATTTTTTTTTTTTGG+TGG | + | chr3_3:81974736-81974755 | None:intergenic | 15.0% |
| !!! | CATTTTTTTGACAAAAAATA+AGG | - | chr3_3:81977771-81977790 | Msa0477660:five_prime_UTR | 15.0% |
| !! | AATAAAAATATGTAGAAAGG+TGG | + | chr3_3:81972956-81972975 | None:intergenic | 20.0% |
| !! | CCAAATAAAAATATGTAGAA+AGG | + | chr3_3:81972959-81972978 | None:intergenic | 20.0% |
| !!! | CCTTTCTACATATTTTTATT+TGG | - | chr3_3:81972956-81972975 | Msa0477660:three_prime_UTR | 20.0% |
| !! | TATTCTATGTATTATTTCCT+TGG | + | chr3_3:81973015-81973034 | None:intergenic | 20.0% |
| !!! | AATCATCAGTAACAAAATTT+TGG | + | chr3_3:81973580-81973599 | None:intergenic | 20.0% |
| !!! | AGGTTAGAATCTTATTTATT+TGG | - | chr3_3:81973740-81973759 | Msa0477660:intron | 20.0% |
| !!! | GGTTAGAATCTTATTTATTT+GGG | - | chr3_3:81973741-81973760 | Msa0477660:intron | 20.0% |
| !!! | TGTTTTCTCATAAACTATTT+TGG | - | chr3_3:81974022-81974041 | Msa0477660:intron | 20.0% |
| !!! | GTTTTCTCATAAACTATTTT+GGG | - | chr3_3:81974023-81974042 | Msa0477660:intron | 20.0% |
| !!! | TTTTCTCATAAACTATTTTG+GGG | - | chr3_3:81974024-81974043 | Msa0477660:intron | 20.0% |
| !! | AATATCACAAATCTTATGTT+AGG | - | chr3_3:81974118-81974137 | Msa0477660:intron | 20.0% |
| !!! | TAATCATCTTTTGCATAATT+TGG | - | chr3_3:81974183-81974202 | Msa0477660:intron | 20.0% |
| !! | TCAATACTCAATAACATAAT+TGG | - | chr3_3:81975215-81975234 | Msa0477660:CDS | 20.0% |
| !! | CATAATTGGATTTCATTTAA+TGG | - | chr3_3:81975229-81975248 | Msa0477660:CDS | 20.0% |
| !! | TTCAATAAAAGAATATGCAT+TGG | + | chr3_3:81975638-81975657 | None:intergenic | 20.0% |
| !!! | ATTAAATGGAGACAATTTTA+TGG | - | chr3_3:81975848-81975867 | Msa0477660:intron | 20.0% |
| !!! | TTAAATGGAGACAATTTTAT+GGG | - | chr3_3:81975849-81975868 | Msa0477660:intron | 20.0% |
| !! | TTATTAACAGCAAAAGAAAT+TGG | + | chr3_3:81976847-81976866 | None:intergenic | 20.0% |
| !!! | ATTTATTTTGTTATTAAGGC+TGG | - | chr3_3:81976986-81977005 | Msa0477660:intron | 20.0% |
| !! | TACATACTTTCAAAAATCTT+TGG | + | chr3_3:81977104-81977123 | None:intergenic | 20.0% |
| !! | AAATGAATGATTACACATAA+GGG | + | chr3_3:81977278-81977297 | None:intergenic | 20.0% |
| !! | TAAATGAATGATTACACATA+AGG | + | chr3_3:81977279-81977298 | None:intergenic | 20.0% |
| !! | AGGAATGTATTCTTAATTTA+AGG | - | chr3_3:81977807-81977826 | Msa0477660:five_prime_UTR | 20.0% |
| !! | GGAATGTATTCTTAATTTAA+GGG | - | chr3_3:81977808-81977827 | Msa0477660:five_prime_UTR | 20.0% |
| !! | TATGGAGTAATGAATTTGTT+TGG | + | chr3_3:81972859-81972878 | None:intergenic | 25.0% |
| ! | TTGAAAACTCTCTCTATATA+TGG | + | chr3_3:81972877-81972896 | None:intergenic | 25.0% |
| ! | CAAGAAAGAAAGAAACTTTA+TGG | + | chr3_3:81972902-81972921 | None:intergenic | 25.0% |
| !! | ATGTATTATTTCCTTGGTTT+TGG | + | chr3_3:81973009-81973028 | None:intergenic | 25.0% |
| !! | AATCTTATTTATTTGGGATG+TGG | - | chr3_3:81973747-81973766 | Msa0477660:intron | 25.0% |
| ! | ACTCTTTCTTTACTATCAAA+TGG | + | chr3_3:81973997-81974016 | None:intergenic | 25.0% |
| ! | AAAAGATGATTATGCAGTAT+AGG | + | chr3_3:81974175-81974194 | None:intergenic | 25.0% |
| !! | AAAAGAAAGTATAGTGAATC+AGG | + | chr3_3:81974422-81974441 | None:intergenic | 25.0% |
| ! | AGTTATGCATAATTTATGCA+AGG | - | chr3_3:81974699-81974718 | Msa0477660:intron | 25.0% |
| ! | TAATATTGCTGTATATCGTT+GGG | - | chr3_3:81974951-81974970 | Msa0477660:intron | 25.0% |
| ! | TTGATACAAATGCGAAAATA+AGG | + | chr3_3:81975167-81975186 | None:intergenic | 25.0% |
| ! | TATTGATCATGATGCATATT+GGG | + | chr3_3:81975201-81975220 | None:intergenic | 25.0% |
| ! | AAGATTCAAGAGATTAGAAA+TGG | + | chr3_3:81975545-81975564 | None:intergenic | 25.0% |
| !!! | ACATCTATTTTTGTTCAACA+GGG | - | chr3_3:81975673-81975692 | Msa0477660:CDS | 25.0% |
| !! | AAGCATTTCAAAGCATTAAA+TGG | - | chr3_3:81975834-81975853 | Msa0477660:intron | 25.0% |
| ! | GGGAAAAAATCATATTGAAT+GGG | + | chr3_3:81975915-81975934 | None:intergenic | 25.0% |
| ! | AGGGAAAAAATCATATTGAA+TGG | + | chr3_3:81975916-81975935 | None:intergenic | 25.0% |
| !! | TTTTTCTACATAAAGAAGCT+TGG | - | chr3_3:81975995-81976014 | Msa0477660:CDS | 25.0% |
| ! | ATTGTAGAAAAGGAAAATCA+GGG | + | chr3_3:81976051-81976070 | None:intergenic | 25.0% |
| ! | TATTGTAGAAAAGGAAAATC+AGG | + | chr3_3:81976052-81976071 | None:intergenic | 25.0% |
| ! | CAACTCAAATAAATGTTTCA+TGG | + | chr3_3:81976551-81976570 | None:intergenic | 25.0% |
| ! | TGACTTGATTAAGAGAATAA+TGG | + | chr3_3:81976916-81976935 | None:intergenic | 25.0% |
| !!! | AGTTGCATTCTTTTTAGTTT+AGG | - | chr3_3:81977159-81977178 | Msa0477660:intron | 25.0% |
| !!! | ATGCATTTTTTTTATTGTGC+AGG | - | chr3_3:81977325-81977344 | Msa0477660:intron | 25.0% |
| ! | ACATTGAAATTTAAGCAACT+CGG | + | chr3_3:81977422-81977441 | None:intergenic | 25.0% |
| ! | ATAAAGGTTTCATTGTTGAT+GGG | + | chr3_3:81977496-81977515 | None:intergenic | 25.0% |
| ! | AATAAAGGTTTCATTGTTGA+TGG | + | chr3_3:81977497-81977516 | None:intergenic | 25.0% |
| !!! | TGATCGTTTTTGACAAATAA+AGG | + | chr3_3:81977512-81977531 | None:intergenic | 25.0% |
| ! | TATTTCCTATGAGAACTTAA+CGG | + | chr3_3:81977625-81977644 | None:intergenic | 25.0% |
| !! | TCAAATCTTTGTATGGTTTT+GGG | - | chr3_3:81977715-81977734 | Msa0477660:five_prime_UTR | 25.0% |
| TATCATGTACTAGTAGTAGT+CGG | + | chr3_3:81972768-81972787 | None:intergenic | 30.0% | |
| ACACGTGATAACAATAAGAA+GGG | - | chr3_3:81972815-81972834 | Msa0477660:three_prime_UTR | 30.0% | |
| ! | GTAATGAATTTGTTTGGTTG+TGG | + | chr3_3:81972853-81972872 | None:intergenic | 30.0% |
| TTAAATAGGAACCAAAACCA+AGG | - | chr3_3:81972995-81973014 | Msa0477660:three_prime_UTR | 30.0% | |
| AGGTGAAGAAGAATAAAAAG+TGG | + | chr3_3:81973077-81973096 | None:intergenic | 30.0% | |
| CGTTAACGATCAAAATCAAA+TGG | - | chr3_3:81973135-81973154 | Msa0477660:exon | 30.0% | |
| TCTTAATGAGATGACGAAAT+TGG | + | chr3_3:81973331-81973350 | None:intergenic | 30.0% | |
| GATTGAATTTCAAAGCGATA+CGG | - | chr3_3:81973450-81973469 | Msa0477660:intron | 30.0% | |
| TGTGTCTGTGTTTGAAAAAT+AGG | - | chr3_3:81973648-81973667 | Msa0477660:intron | 30.0% | |
| ATAAGATTCTAACCTCAGTT+CGG | + | chr3_3:81973735-81973754 | None:intergenic | 30.0% | |
| !! | GTCTTCATTCTGAAATATAC+AGG | - | chr3_3:81973906-81973925 | Msa0477660:CDS | 30.0% |
| ! | TGAAATATACAGGCATTGTT+TGG | - | chr3_3:81973916-81973935 | Msa0477660:CDS | 30.0% |
| GTCATTGAAAATGCATGTTA+AGG | - | chr3_3:81974205-81974224 | Msa0477660:CDS | 30.0% | |
| TAAGGAATGATAGATCGATA+AGG | - | chr3_3:81974223-81974242 | Msa0477660:CDS | 30.0% | |
| !! | TGACTTGTGAGTTTTACTAA+TGG | - | chr3_3:81974310-81974329 | Msa0477660:intron | 30.0% |
| CTAACATGTCATTCAATAGT+TGG | + | chr3_3:81974397-81974416 | None:intergenic | 30.0% | |
| !! | TTCTGTTCTGCATTGTTTTT+AGG | - | chr3_3:81974488-81974507 | Msa0477660:intron | 30.0% |
| ! | AAGGAGTATATTCCAATTGT+TGG | - | chr3_3:81974520-81974539 | Msa0477660:intron | 30.0% |
| ! | AGGAGTATATTCCAATTGTT+GGG | - | chr3_3:81974521-81974540 | Msa0477660:intron | 30.0% |
| !! | TTGAGTGCTAAGCTTATTTT+TGG | - | chr3_3:81974562-81974581 | Msa0477660:intron | 30.0% |
| CTAATATTGCTGTATATCGT+TGG | - | chr3_3:81974950-81974969 | Msa0477660:intron | 30.0% | |
| ! | TCATACAAAGGTTTTCAACT+TGG | - | chr3_3:81975041-81975060 | Msa0477660:intron | 30.0% |
| ! | GTATTGATCATGATGCATAT+TGG | + | chr3_3:81975202-81975221 | None:intergenic | 30.0% |
| TTCAAGAGATTAGAAATGGT+TGG | + | chr3_3:81975541-81975560 | None:intergenic | 30.0% | |
| AAGAATATGCATTGGAGATA+TGG | + | chr3_3:81975630-81975649 | None:intergenic | 30.0% | |
| CTGTTGAACAAAAATAGATG+TGG | + | chr3_3:81975674-81975693 | None:intergenic | 30.0% | |
| !!! | CACATCTATTTTTGTTCAAC+AGG | - | chr3_3:81975672-81975691 | Msa0477660:intron | 30.0% |
| ATTGAATGGGATGAAATACA+AGG | + | chr3_3:81975902-81975921 | None:intergenic | 30.0% | |
| CATGATTCAAATCATAAGCA+GGG | + | chr3_3:81975935-81975954 | None:intergenic | 30.0% | |
| ACATGATTCAAATCATAAGC+AGG | + | chr3_3:81975936-81975955 | None:intergenic | 30.0% | |
| ! | TCAAAAACACATGTTACTTG+TGG | + | chr3_3:81976021-81976040 | None:intergenic | 30.0% |
| ! | GTAAAGCATCAAAAAGTTGT+TGG | + | chr3_3:81976350-81976369 | None:intergenic | 30.0% |
| ! | AGAATCTTTTGCAATTCCTT+TGG | - | chr3_3:81976393-81976412 | Msa0477660:intron | 30.0% |
| TGATAAAGAACTGTACAGAA+AGG | + | chr3_3:81976424-81976443 | None:intergenic | 30.0% | |
| TATTTCTCCTGCAATTGAAT+AGG | - | chr3_3:81976575-81976594 | Msa0477660:intron | 30.0% | |
| AGTCACATTATCAAGCAAAT+TGG | - | chr3_3:81976614-81976633 | Msa0477660:intron | 30.0% | |
| ATTGGAATGTTTACTTTCAC+AGG | - | chr3_3:81976632-81976651 | Msa0477660:intron | 30.0% | |
| TTGGAATGTTTACTTTCACA+GGG | - | chr3_3:81976633-81976652 | Msa0477660:intron | 30.0% | |
| ATATATACCTGACATCTGAT+GGG | - | chr3_3:81976696-81976715 | Msa0477660:intron | 30.0% | |
| AAAGTATGTACTGTTTGATG+TGG | - | chr3_3:81977114-81977133 | Msa0477660:intron | 30.0% | |
| GAAATATATATCCATGCTGT+AGG | + | chr3_3:81977249-81977268 | None:intergenic | 30.0% | |
| !!! | CATTTTTTTTATTGTGCAGG+AGG | - | chr3_3:81977328-81977347 | Msa0477660:intron | 30.0% |
| CATTGAAATTTAAGCAACTC+GGG | + | chr3_3:81977421-81977440 | None:intergenic | 30.0% | |
| ACAAAAAATATCCACCATCA+CGG | + | chr3_3:81977462-81977481 | None:intergenic | 30.0% | |
| AAGAGTCTCAAATCTTTGTA+TGG | - | chr3_3:81977708-81977727 | Msa0477660:five_prime_UTR | 30.0% | |
| ! | CTCAAATCTTTGTATGGTTT+TGG | - | chr3_3:81977714-81977733 | Msa0477660:five_prime_UTR | 30.0% |
| !! | CAAATCTTTGTATGGTTTTG+GGG | - | chr3_3:81977716-81977735 | Msa0477660:five_prime_UTR | 30.0% |
| !!! | AAATCTTTGTATGGTTTTGG+GGG | - | chr3_3:81977717-81977736 | Msa0477660:five_prime_UTR | 30.0% |
| GTTTCCTCTTACAAAAGAAA+AGG | - | chr3_3:81977745-81977764 | Msa0477660:five_prime_UTR | 30.0% | |
| ! | GATACCTTTTCTTTTGTAAG+AGG | + | chr3_3:81977752-81977771 | None:intergenic | 30.0% |
| ! | AATAAGGAATGATTTTGAGC+AGG | - | chr3_3:81977787-81977806 | Msa0477660:five_prime_UTR | 30.0% |
| AATTTAAGGGTTTGACATTG+TGG | - | chr3_3:81977821-81977840 | Msa0477660:five_prime_UTR | 30.0% | |
| ATCTTATCGCATTCTTACCT+TGG | + | chr3_3:81972731-81972750 | None:intergenic | 35.0% | |
| GACACGTGATAACAATAAGA+AGG | - | chr3_3:81972814-81972833 | Msa0477660:three_prime_UTR | 35.0% | |
| CACGTGATAACAATAAGAAG+GGG | - | chr3_3:81972816-81972835 | Msa0477660:three_prime_UTR | 35.0% | |
| ATACTCTCGTGAACTTTATG+CGG | + | chr3_3:81972932-81972951 | None:intergenic | 35.0% | |
| !! | GTTGTTGATTCGAGAATAAC+CGG | + | chr3_3:81973055-81973074 | None:intergenic | 35.0% |
| AAGAAAACAAACATACACCG+AGG | + | chr3_3:81973243-81973262 | None:intergenic | 35.0% | |
| TTATGCAGTATAGGTCTGTT+TGG | + | chr3_3:81974166-81974185 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTGGTGGTGAACCT+CGG | + | chr3_3:81974726-81974745 | None:intergenic | 35.0% |
| AGGGCTATGTTCAAAAAAGT+GGG | + | chr3_3:81974787-81974806 | None:intergenic | 35.0% | |
| ATAAAGGGGAGAGAAAGTTA+AGG | + | chr3_3:81974920-81974939 | None:intergenic | 35.0% | |
| AAGATCAAGGCAAACAAACA+CGG | + | chr3_3:81974981-81975000 | None:intergenic | 35.0% | |
| ATAATGCGCTGAAAAGATCA+AGG | + | chr3_3:81974994-81975013 | None:intergenic | 35.0% | |
| ! | TGATAAGCACTGTCAAAGAA+AGG | + | chr3_3:81975421-81975440 | None:intergenic | 35.0% |
| TTTCTTTGACAGTGCTTATC+AGG | - | chr3_3:81975420-81975439 | Msa0477660:intron | 35.0% | |
| ! | CATGGATTATCCCAAGAAAT+GGG | + | chr3_3:81975575-81975594 | None:intergenic | 35.0% |
| ! | GGTAGAAGTATATTCTTGTG+TGG | + | chr3_3:81975609-81975628 | None:intergenic | 35.0% |
| TGAAATGCTTACAATGCTCA+AGG | + | chr3_3:81975824-81975843 | None:intergenic | 35.0% | |
| ATCTGTAGTGATTAGTGATC+TGG | - | chr3_3:81975876-81975895 | Msa0477660:intron | 35.0% | |
| !! | GGGAGCATTTATTGTAGAAA+AGG | + | chr3_3:81976061-81976080 | None:intergenic | 35.0% |
| ATTGTACAAATCCCTGAAAG+AGG | + | chr3_3:81976277-81976296 | None:intergenic | 35.0% | |
| ATGGTACTCTTTAGTCAAGA+TGG | + | chr3_3:81976678-81976697 | None:intergenic | 35.0% | |
| CATCAGATGTCAGGTATATA+TGG | + | chr3_3:81976697-81976716 | None:intergenic | 35.0% | |
| CATATATACCTGACATCTGA+TGG | - | chr3_3:81976695-81976714 | Msa0477660:intron | 35.0% | |
| TTCAATTAGTTCAGACGAGT+AGG | - | chr3_3:81976743-81976762 | Msa0477660:intron | 35.0% | |
| AAAGAAATTGGACAACAGCA+TGG | + | chr3_3:81976835-81976854 | None:intergenic | 35.0% | |
| AATGCATGTCTTGAGTTATG+TGG | + | chr3_3:81977312-81977331 | None:intergenic | 35.0% | |
| AAAAAATATCCACCATCACG+GGG | + | chr3_3:81977460-81977479 | None:intergenic | 35.0% | |
| CAAAAAATATCCACCATCAC+GGG | + | chr3_3:81977461-81977480 | None:intergenic | 35.0% | |
| TACAAGGAAAGTTCTCTATG+GGG | + | chr3_3:81977583-81977602 | None:intergenic | 35.0% | |
| GTACAAGGAAAGTTCTCTAT+GGG | + | chr3_3:81977584-81977603 | None:intergenic | 35.0% | |
| TGTACAAGGAAAGTTCTCTA+TGG | + | chr3_3:81977585-81977604 | None:intergenic | 35.0% | |
| ! | TTGATTCGAGAATAACCGGT+GGG | + | chr3_3:81973051-81973070 | None:intergenic | 40.0% |
| AACAAACATACACCGAGGAT+AGG | + | chr3_3:81973238-81973257 | None:intergenic | 40.0% | |
| AAGTTGAGCTTAATTGGGCT+TGG | + | chr3_3:81973697-81973716 | None:intergenic | 40.0% | |
| AAGCCCAATTAAGCTCAACT+TGG | - | chr3_3:81973696-81973715 | Msa0477660:intron | 40.0% | |
| AGCCCAATTAAGCTCAACTT+GGG | - | chr3_3:81973697-81973716 | Msa0477660:intron | 40.0% | |
| ! | CACCCAAGTTGAGCTTAATT+GGG | + | chr3_3:81973702-81973721 | None:intergenic | 40.0% |
| ! | ACACCCAAGTTGAGCTTAAT+TGG | + | chr3_3:81973703-81973722 | None:intergenic | 40.0% |
| ATTAAGCTCAACTTGGGTGT+TGG | - | chr3_3:81973703-81973722 | Msa0477660:intron | 40.0% | |
| CAAATCACATGTGTCAGTGT+TGG | - | chr3_3:81973873-81973892 | Msa0477660:CDS | 40.0% | |
| !!! | TGTTTTTAGGTCACGCAACA+AGG | - | chr3_3:81974501-81974520 | Msa0477660:intron | 40.0% |
| !!! | AGCTTATTTTTGGTGCAGAC+AGG | - | chr3_3:81974572-81974591 | Msa0477660:intron | 40.0% |
| ATAACTGAGCTAAGCTCACA+GGG | + | chr3_3:81974685-81974704 | None:intergenic | 40.0% | |
| CATAATTTATGCAAGGTCCG+AGG | - | chr3_3:81974706-81974725 | Msa0477660:intron | 40.0% | |
| AAGTGGGCAAAAGAACAGTT+AGG | + | chr3_3:81974771-81974790 | None:intergenic | 40.0% | |
| CAGGGCTATGTTCAAAAAAG+TGG | + | chr3_3:81974788-81974807 | None:intergenic | 40.0% | |
| TATACTTGCCAACACCTACT+TGG | - | chr3_3:81975013-81975032 | Msa0477660:intron | 40.0% | |
| ATACTTGCCAACACCTACTT+GGG | - | chr3_3:81975014-81975033 | Msa0477660:intron | 40.0% | |
| TTTGTATGATTGCCCCAAGT+AGG | + | chr3_3:81975030-81975049 | None:intergenic | 40.0% | |
| TACTTGGGGCAATCATACAA+AGG | - | chr3_3:81975029-81975048 | Msa0477660:intron | 40.0% | |
| ! | ACAAAGGTTTTCAACTTGGC+AGG | - | chr3_3:81975045-81975064 | Msa0477660:intron | 40.0% |
| AAGAAGTCCTGTAAGGAACA+AGG | + | chr3_3:81975266-81975285 | None:intergenic | 40.0% | |
| CAAAACAACAGATCCAGATG+GGG | + | chr3_3:81975305-81975324 | None:intergenic | 40.0% | |
| GCAAAACAACAGATCCAGAT+GGG | + | chr3_3:81975306-81975325 | None:intergenic | 40.0% | |
| AGCAAAACAACAGATCCAGA+TGG | + | chr3_3:81975307-81975326 | None:intergenic | 40.0% | |
| TTGATCCAACGCTTGAACAA+TGG | - | chr3_3:81975356-81975375 | Msa0477660:intron | 40.0% | |
| TGATCCAACGCTTGAACAAT+GGG | - | chr3_3:81975357-81975376 | Msa0477660:intron | 40.0% | |
| ACCATTGAGAAACTTGTGTG+TGG | - | chr3_3:81975479-81975498 | Msa0477660:CDS | 40.0% | |
| TCCACACACAAGTTTCTCAA+TGG | + | chr3_3:81975483-81975502 | None:intergenic | 40.0% | |
| TCTTGAAGCTTCCCATTTCT+TGG | - | chr3_3:81975561-81975580 | Msa0477660:intron | 40.0% | |
| CTTGAAGCTTCCCATTTCTT+GGG | - | chr3_3:81975562-81975581 | Msa0477660:intron | 40.0% | |
| ! | CCATGGATTATCCCAAGAAA+TGG | + | chr3_3:81975576-81975595 | None:intergenic | 40.0% |
| CCATTTCTTGGGATAATCCA+TGG | - | chr3_3:81975573-81975592 | Msa0477660:intron | 40.0% | |
| TGTGTGGACATTATTCACCA+TGG | + | chr3_3:81975593-81975612 | None:intergenic | 40.0% | |
| TCAGCAACAAACAAACGAAC+AGG | + | chr3_3:81975733-81975752 | None:intergenic | 40.0% | |
| ! | GTTCGTTTGTTTGTTGCTGA+TGG | - | chr3_3:81975733-81975752 | Msa0477660:CDS | 40.0% |
| CATGTTCTTCGCATAACTCT+GGG | + | chr3_3:81975776-81975795 | None:intergenic | 40.0% | |
| CAGAGTTATGCGAAGAACAT+GGG | - | chr3_3:81975775-81975794 | Msa0477660:intron | 40.0% | |
| TTCTACAATAAATGCTCCCC+AGG | - | chr3_3:81976062-81976081 | Msa0477660:intron | 40.0% | |
| GCCAACTGAAACTTGTGATT+AGG | - | chr3_3:81976121-81976140 | Msa0477660:intron | 40.0% | |
| GCCTAATCACAAGTTTCAGT+TGG | + | chr3_3:81976125-81976144 | None:intergenic | 40.0% | |
| ATAGGAGGACTTGAGTACAT+GGG | + | chr3_3:81976147-81976166 | None:intergenic | 40.0% | |
| AATAGGAGGACTTGAGTACA+TGG | + | chr3_3:81976148-81976167 | None:intergenic | 40.0% | |
| TACTCAAGTCCTCCTATTCA+TGG | - | chr3_3:81976150-81976169 | Msa0477660:intron | 40.0% | |
| ACAATGGATGCACCATGAAT+AGG | + | chr3_3:81976165-81976184 | None:intergenic | 40.0% | |
| TATTCATGGTGCATCCATTG+TGG | - | chr3_3:81976164-81976183 | Msa0477660:CDS | 40.0% | |
| CAATATACTTCTGCTTCCCT+TGG | - | chr3_3:81976215-81976234 | Msa0477660:intron | 40.0% | |
| !!! | ACTTGTTTTGCTCCTCTTTC+AGG | - | chr3_3:81976262-81976281 | Msa0477660:intron | 40.0% |
| !!! | CTTGTTTTGCTCCTCTTTCA+GGG | - | chr3_3:81976263-81976282 | Msa0477660:intron | 40.0% |
| TCAGGGATTTGTACAATGAC+TGG | - | chr3_3:81976280-81976299 | Msa0477660:intron | 40.0% | |
| !! | TGACTGGACTATTGAGTTGA+AGG | - | chr3_3:81976296-81976315 | Msa0477660:intron | 40.0% |
| !! | GACTATTGAGTTGAAGGCAA+TGG | - | chr3_3:81976302-81976321 | Msa0477660:intron | 40.0% |
| TTTGATGCTTTACGTGCTAG+AGG | - | chr3_3:81976357-81976376 | Msa0477660:intron | 40.0% | |
| AATCCTTGAAAGATTCTCGC+AGG | + | chr3_3:81976522-81976541 | None:intergenic | 40.0% | |
| TGGTGTACCTATTCAATTGC+AGG | + | chr3_3:81976585-81976604 | None:intergenic | 40.0% | |
| TGCAATTGAATAGGTACACC+AGG | - | chr3_3:81976584-81976603 | Msa0477660:intron | 40.0% | |
| ATAATGTGACTCCAATCACC+TGG | + | chr3_3:81976605-81976624 | None:intergenic | 40.0% | |
| AGTTGCAATGTGCAACATGT+TGG | - | chr3_3:81976873-81976892 | Msa0477660:CDS | 40.0% | |
| GTTGCAATGTGCAACATGTT+GGG | - | chr3_3:81976874-81976893 | Msa0477660:CDS | 40.0% | |
| TTGCAATGTGCAACATGTTG+GGG | - | chr3_3:81976875-81976894 | Msa0477660:CDS | 40.0% | |
| GTTAATCTCTACCTACAGCA+TGG | - | chr3_3:81977235-81977254 | Msa0477660:intron | 40.0% | |
| TTATCAATTCATCCCCGTGA+TGG | - | chr3_3:81977445-81977464 | Msa0477660:CDS | 40.0% | |
| ACAAGGAAAGTTCTCTATGG+GGG | + | chr3_3:81977582-81977601 | None:intergenic | 40.0% | |
| TTTCCTTGTACATCTGTTGC+AGG | - | chr3_3:81977593-81977612 | Msa0477660:five_prime_UTR | 40.0% | |
| TTCCTTGTACATCTGTTGCA+GGG | - | chr3_3:81977594-81977613 | Msa0477660:five_prime_UTR | 40.0% | |
| AGAAAAAACGACTCTGTCGT+AGG | - | chr3_3:81977652-81977671 | Msa0477660:five_prime_UTR | 40.0% | |
| AGAGAGAAGAACGGAAACCA+AGG | - | chr3_3:81972711-81972730 | Msa0477660:three_prime_UTR | 45.0% | |
| ATGTACTAGTAGTAGTCGGC+GGG | + | chr3_3:81972764-81972783 | None:intergenic | 45.0% | |
| CATGTACTAGTAGTAGTCGG+CGG | + | chr3_3:81972765-81972784 | None:intergenic | 45.0% | |
| !! | GTTGATTCGAGAATAACCGG+TGG | + | chr3_3:81973052-81973071 | None:intergenic | 45.0% |
| ATTCTTCTTCACCTGATCGC+AGG | - | chr3_3:81973083-81973102 | Msa0477660:three_prime_UTR | 45.0% | |
| ATAGTGTTTAGCCTGCGATC+AGG | + | chr3_3:81973097-81973116 | None:intergenic | 45.0% | |
| GAAGACGGAATCAGAAGAAG+CGG | + | chr3_3:81973188-81973207 | None:intergenic | 45.0% | |
| ! | GGTAACTGTCGCTTACAACA+AGG | - | chr3_3:81973669-81973688 | Msa0477660:intron | 45.0% |
| AATGGCCTGTGATACTTACC+AGG | - | chr3_3:81974328-81974347 | Msa0477660:intron | 45.0% | |
| ACCTTCCTGGTAAGTATCAC+AGG | + | chr3_3:81974336-81974355 | None:intergenic | 45.0% | |
| CTCACAACATCCAACACAAG+GGG | + | chr3_3:81974362-81974381 | None:intergenic | 45.0% | |
| CCTCACAACATCCAACACAA+GGG | + | chr3_3:81974363-81974382 | None:intergenic | 45.0% | |
| AAATCAGCGAGCCCAACAAT+TGG | + | chr3_3:81974535-81974554 | None:intergenic | 45.0% | |
| CATAACTGAGCTAAGCTCAC+AGG | + | chr3_3:81974686-81974705 | None:intergenic | 45.0% | |
| CCCTGTTCTCTTGAATAGCA+GGG | + | chr3_3:81974806-81974825 | None:intergenic | 45.0% | |
| CCCTGCTATTCAAGAGAACA+GGG | - | chr3_3:81974803-81974822 | Msa0477660:CDS | 45.0% | |
| ACCCTGTTCTCTTGAATAGC+AGG | + | chr3_3:81974807-81974826 | None:intergenic | 45.0% | |
| AACAGGGTTACCACTGTTCA+AGG | - | chr3_3:81974819-81974838 | Msa0477660:CDS | 45.0% | |
| ACCACTGTTCAAGGCTTATC+TGG | - | chr3_3:81974828-81974847 | Msa0477660:CDS | 45.0% | |
| ACCAGATAAGCCTTGAACAG+TGG | + | chr3_3:81974832-81974851 | None:intergenic | 45.0% | |
| GTTCAAGGCTTATCTGGTAC+TGG | - | chr3_3:81974834-81974853 | Msa0477660:CDS | 45.0% | |
| !! | GTACTGGTTCGCTAAGAGTT+GGG | - | chr3_3:81974850-81974869 | Msa0477660:CDS | 45.0% |
| !! | TACTGGTTCGCTAAGAGTTG+GGG | - | chr3_3:81974851-81974870 | Msa0477660:CDS | 45.0% |
| TACTTGCCAACACCTACTTG+GGG | - | chr3_3:81975015-81975034 | Msa0477660:intron | 45.0% | |
| AGTCCTGTAAGGAACAAGGA+GGG | + | chr3_3:81975262-81975281 | None:intergenic | 45.0% | |
| AAGTCCTGTAAGGAACAAGG+AGG | + | chr3_3:81975263-81975282 | None:intergenic | 45.0% | |
| GTTCCTTACAGGACTTCTTG+AGG | - | chr3_3:81975267-81975286 | Msa0477660:CDS | 45.0% | |
| GATCCTCAAGAAGTCCTGTA+AGG | + | chr3_3:81975273-81975292 | None:intergenic | 45.0% | |
| ACAGGACTTCTTGAGGATCT+TGG | - | chr3_3:81975274-81975293 | Msa0477660:CDS | 45.0% | |
| ATCTGCATCTAGACTTCCAC+TGG | + | chr3_3:81975704-81975723 | None:intergenic | 45.0% | |
| ! | CGTTTGTTTGTTGCTGATGG+TGG | - | chr3_3:81975736-81975755 | Msa0477660:CDS | 45.0% |
| CCATGTTCTTCGCATAACTC+TGG | + | chr3_3:81975777-81975796 | None:intergenic | 45.0% | |
| CCAGAGTTATGCGAAGAACA+TGG | - | chr3_3:81975774-81975793 | Msa0477660:intron | 45.0% | |
| GCGAAGAACATGGGTCTTTA+TGG | - | chr3_3:81975784-81975803 | Msa0477660:intron | 45.0% | |
| GGTCTTTATGGTGAACGTGT+TGG | - | chr3_3:81975796-81975815 | Msa0477660:intron | 45.0% | |
| ATGGATGCACCATGAATAGG+AGG | + | chr3_3:81976162-81976181 | None:intergenic | 45.0% | |
| TCACTACCTGTCCTTGAGAA+TGG | + | chr3_3:81976193-81976212 | None:intergenic | 45.0% | |
| ATATGTCCAAGTCCAGCCAA+GGG | + | chr3_3:81976234-81976253 | None:intergenic | 45.0% | |
| ATGCTTTACGTGCTAGAGGT+TGG | - | chr3_3:81976361-81976380 | Msa0477660:intron | 45.0% | |
| GTACAGAAAGGACAAGCCAA+AGG | + | chr3_3:81976412-81976431 | None:intergenic | 45.0% | |
| TCTCCTGCGAGAATCTTTCA+AGG | - | chr3_3:81976516-81976535 | Msa0477660:intron | 45.0% | |
| GAATAGGTACACCAGGTGAT+TGG | - | chr3_3:81976591-81976610 | Msa0477660:intron | 45.0% | |
| ! | GTCAAGATGGAAACTTGCTC+AGG | + | chr3_3:81976665-81976684 | None:intergenic | 45.0% |
| TGTCTTACCCATCAGATGTC+AGG | + | chr3_3:81976706-81976725 | None:intergenic | 45.0% | |
| GCAGCATGTTCACACTTAAC+TGG | + | chr3_3:81976798-81976817 | None:intergenic | 45.0% | |
| TGCAATGTGCAACATGTTGG+GGG | - | chr3_3:81976876-81976895 | Msa0477660:CDS | 45.0% | |
| ! | ATTGTGCAGGAGGATTAGCA+TGG | - | chr3_3:81977338-81977357 | Msa0477660:CDS | 45.0% |
| GTATTGCATCAGCCAGATGT+GGG | + | chr3_3:81977386-81977405 | None:intergenic | 45.0% | |
| TGTATTGCATCAGCCAGATG+TGG | + | chr3_3:81977387-81977406 | None:intergenic | 45.0% | |
| CAAGGAAAGTTCTCTATGGG+GGG | + | chr3_3:81977581-81977600 | None:intergenic | 45.0% | |
| TCCTTGTACATCTGTTGCAG+GGG | - | chr3_3:81977595-81977614 | Msa0477660:five_prime_UTR | 45.0% | |
| GAGAGCCGTTAAGTTCTCAT+AGG | - | chr3_3:81977617-81977636 | Msa0477660:five_prime_UTR | 45.0% | |
| AACGACTCTGTCGTAGGATT+TGG | - | chr3_3:81977658-81977677 | Msa0477660:five_prime_UTR | 45.0% | |
| !!! | GTTTAAAATTAAATTTAAAT+AGG | - | chr3_3:81972981-81973000 | Msa0477660:three_prime_UTR | 5.0% |
| !!! | ATAAGAATATTTTTTTTTTT+TGG | + | chr3_3:81974739-81974758 | None:intergenic | 5.0% |
| !! | ATTAGTTAAAAAAATATAAA+GGG | + | chr3_3:81974935-81974954 | None:intergenic | 5.0% |
| !! | TATTAGTTAAAAAAATATAA+AGG | + | chr3_3:81974936-81974955 | None:intergenic | 5.0% |
| TATATACAGCATGCGCCCAC+CGG | - | chr3_3:81973033-81973052 | Msa0477660:three_prime_UTR | 50.0% | |
| TCAGAAGAAGCGGTTGGAGA+AGG | + | chr3_3:81973178-81973197 | None:intergenic | 50.0% | |
| ACGGAATCAGAAGAAGCGGT+TGG | + | chr3_3:81973184-81973203 | None:intergenic | 50.0% | |
| ACGAACGAGATGAGCGAAGA+CGG | + | chr3_3:81973203-81973222 | None:intergenic | 50.0% | |
| GCTCCTGAAGATCCTATCCT+CGG | - | chr3_3:81973223-81973242 | Msa0477660:intron | 50.0% | |
| ACACCGAGGATAGGATCTTC+AGG | + | chr3_3:81973229-81973248 | None:intergenic | 50.0% | |
| ! | CGATACGGTTCTGATGCTGA+TGG | - | chr3_3:81973465-81973484 | Msa0477660:intron | 50.0% |
| ! | TGTTGGTGCTTACCGAACTG+AGG | - | chr3_3:81973720-81973739 | Msa0477660:intron | 50.0% |
| GCCTGTGATACTTACCAGGA+AGG | - | chr3_3:81974332-81974351 | Msa0477660:intron | 50.0% | |
| ACACAAGGGGTTTACCTTCC+TGG | + | chr3_3:81974349-81974368 | None:intergenic | 50.0% | |
| GGAAGGTAAACCCCTTGTGT+TGG | - | chr3_3:81974349-81974368 | Msa0477660:intron | 50.0% | |
| CCCTTGTGTTGGATGTTGTG+AGG | - | chr3_3:81974360-81974379 | Msa0477660:intron | 50.0% | |
| GCCTCACAACATCCAACACA+AGG | + | chr3_3:81974364-81974383 | None:intergenic | 50.0% | |
| GCCCTGCTATTCAAGAGAAC+AGG | - | chr3_3:81974802-81974821 | Msa0477660:CDS | 50.0% | |
| !! | GGTACTGGTTCGCTAAGAGT+TGG | - | chr3_3:81974849-81974868 | Msa0477660:CDS | 50.0% |
| !! | ACTGGTTCGCTAAGAGTTGG+GGG | - | chr3_3:81974852-81974871 | Msa0477660:CDS | 50.0% |
| TGATTGCCCCAAGTAGGTGT+TGG | + | chr3_3:81975024-81975043 | None:intergenic | 50.0% | |
| TACTATGCTCCAGCAACACG+AGG | - | chr3_3:81975090-81975109 | Msa0477660:intron | 50.0% | |
| ACTATGCTCCAGCAACACGA+GGG | - | chr3_3:81975091-81975110 | Msa0477660:intron | 50.0% | |
| ACACGAGGGCTTGACTTTCA+AGG | - | chr3_3:81975105-81975124 | Msa0477660:intron | 50.0% | |
| TCCTGTAAGGAACAAGGAGG+GGG | + | chr3_3:81975260-81975279 | None:intergenic | 50.0% | |
| GTCCTGTAAGGAACAAGGAG+GGG | + | chr3_3:81975261-81975280 | None:intergenic | 50.0% | |
| GCATGTGCACATAACCCTAC+TGG | - | chr3_3:81975331-81975350 | Msa0477660:intron | 50.0% | |
| GCGTTGGATCAACACCAGTA+GGG | + | chr3_3:81975348-81975367 | None:intergenic | 50.0% | |
| ! | AGCGTTGGATCAACACCAGT+AGG | + | chr3_3:81975349-81975368 | None:intergenic | 50.0% |
| TGCTCCCATTGTTCAAGCGT+TGG | + | chr3_3:81975364-81975383 | None:intergenic | 50.0% | |
| ! | GTTCAACAGGGTTTTGCCAG+TGG | - | chr3_3:81975685-81975704 | Msa0477660:CDS | 50.0% |
| !! | TGCTGATGGTGGAGAATTGC+TGG | - | chr3_3:81975747-81975766 | Msa0477660:CDS | 50.0% |
| AGTCAGCGGATGTTTCAAGC+AGG | - | chr3_3:81976091-81976110 | Msa0477660:intron | 50.0% | |
| GTCAGCGGATGTTTCAAGCA+GGG | - | chr3_3:81976092-81976111 | Msa0477660:intron | 50.0% | |
| CTACCTGTCCTTGAGAATGG+CGG | + | chr3_3:81976190-81976209 | None:intergenic | 50.0% | |
| ATACTTCTGCTTCCCTTGGC+TGG | - | chr3_3:81976219-81976238 | Msa0477660:intron | 50.0% | |
| CATATGTCCAAGTCCAGCCA+AGG | + | chr3_3:81976235-81976254 | None:intergenic | 50.0% | |
| CAGCATGGTACGCAAGCTAT+AGG | + | chr3_3:81976820-81976839 | None:intergenic | 50.0% | |
| CTCCAAAACAGTCCCACATC+TGG | - | chr3_3:81977371-81977390 | Msa0477660:CDS | 50.0% | |
| ! | AGCCAGATGTGGGACTGTTT+TGG | + | chr3_3:81977376-81977395 | None:intergenic | 50.0% |
| TCAATTCATCCCCGTGATGG+TGG | - | chr3_3:81977448-81977467 | Msa0477660:CDS | 50.0% | |
| GAAAGTTCTCTATGGGGGGA+AGG | + | chr3_3:81977577-81977596 | None:intergenic | 50.0% | |
| TCCCCTGCAACAGATGTACA+AGG | + | chr3_3:81977599-81977618 | None:intergenic | 50.0% | |
| AAGTCAAGCCCTCGTGTTGC+TGG | + | chr3_3:81975102-81975121 | None:intergenic | 55.0% | |
| TCCCCCTCCTTGTTCCTTAC+AGG | - | chr3_3:81975256-81975275 | Msa0477660:CDS | 55.0% | |
| !! | GATCTTGGTTCTGCCCCATC+TGG | - | chr3_3:81975289-81975308 | Msa0477660:intron | 55.0% |
| !! | ATCCGCTGACTTGCTGACCT+GGG | + | chr3_3:81976082-81976101 | None:intergenic | 55.0% |
| CTTGAGAATGGCGGCCACAA+TGG | + | chr3_3:81976181-81976200 | None:intergenic | 55.0% | |
| CATTGTGGCCGCCATTCTCA+AGG | - | chr3_3:81976179-81976198 | Msa0477660:CDS | 55.0% | |
| ! | TGCAGGAGGATTAGCATGGC+TGG | - | chr3_3:81977342-81977361 | Msa0477660:CDS | 55.0% |
| TCCCCAGGTCAGCAAGTCAG+CGG | - | chr3_3:81976077-81976096 | Msa0477660:intron | 60.0% | |
| !! | TCCGCTGACTTGCTGACCTG+GGG | + | chr3_3:81976081-81976100 | None:intergenic | 60.0% |
| !! | CATCCGCTGACTTGCTGACC+TGG | + | chr3_3:81976083-81976102 | None:intergenic | 60.0% |
| TGGCCGCCATTCTCAAGGAC+AGG | - | chr3_3:81976184-81976203 | Msa0477660:CDS | 60.0% | |
| CTGCTTCCCTTGGCTGGACT+TGG | - | chr3_3:81976225-81976244 | Msa0477660:intron | 60.0% | |
| !! | CTCTATGGGGGGAAGGCATC+AGG | + | chr3_3:81977570-81977589 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 81972706 | 81977869 | 81972706 | ID=Msa0477660;Name=Msa0477660 |
| chr3_3 | mRNA | 81972706 | 81977869 | 81972706 | ID=Msa0477660-mRNA-1;Parent=Msa0477660;Name=Msa0477660-mRNA-1;_AED=0.07;_eAED=0.07;_QI=337|1|1|1|1|1|12|438|455 |
| chr3_3 | exon | 81972706 | 81973228 | 81972706 | ID=Msa0477660-mRNA-1:exon:22710;Parent=Msa0477660-mRNA-1 |
| chr3_3 | exon | 81973858 | 81973978 | 81973858 | ID=Msa0477660-mRNA-1:exon:22709;Parent=Msa0477660-mRNA-1 |
| chr3_3 | exon | 81974197 | 81974291 | 81974197 | ID=Msa0477660-mRNA-1:exon:22708;Parent=Msa0477660-mRNA-1 |
| chr3_3 | exon | 81974370 | 81974491 | 81974370 | ID=Msa0477660-mRNA-1:exon:22707;Parent=Msa0477660-mRNA-1 |
| chr3_3 | exon | 81974744 | 81974881 | 81974744 | ID=Msa0477660-mRNA-1:exon:22706;Parent=Msa0477660-mRNA-1 |
| chr3_3 | exon | 81975134 | 81975297 | 81975134 | ID=Msa0477660-mRNA-1:exon:22705;Parent=Msa0477660-mRNA-1 |
| chr3_3 | exon | 81975449 | 81975569 | 81975449 | ID=Msa0477660-mRNA-1:exon:22704;Parent=Msa0477660-mRNA-1 |
| chr3_3 | exon | 81975673 | 81975772 | 81975673 | ID=Msa0477660-mRNA-1:exon:22703;Parent=Msa0477660-mRNA-1 |
| chr3_3 | exon | 81975982 | 81976065 | 81975982 | ID=Msa0477660-mRNA-1:exon:22702;Parent=Msa0477660-mRNA-1 |
| chr3_3 | exon | 81976164 | 81976225 | 81976164 | ID=Msa0477660-mRNA-1:exon:22701;Parent=Msa0477660-mRNA-1 |
| chr3_3 | exon | 81976834 | 81976905 | 81976834 | ID=Msa0477660-mRNA-1:exon:22700;Parent=Msa0477660-mRNA-1 |
| chr3_3 | exon | 81977329 | 81977869 | 81977329 | ID=Msa0477660-mRNA-1:exon:22699;Parent=Msa0477660-mRNA-1 |
| chr3_3 | five_prime_UTR | 81977533 | 81977869 | 81977533 | ID=Msa0477660-mRNA-1:five_prime_utr;Parent=Msa0477660-mRNA-1 |
| chr3_3 | CDS | 81977329 | 81977532 | 81977329 | ID=Msa0477660-mRNA-1:cds;Parent=Msa0477660-mRNA-1 |
| chr3_3 | CDS | 81976834 | 81976905 | 81976834 | ID=Msa0477660-mRNA-1:cds;Parent=Msa0477660-mRNA-1 |
| chr3_3 | CDS | 81976164 | 81976225 | 81976164 | ID=Msa0477660-mRNA-1:cds;Parent=Msa0477660-mRNA-1 |
| chr3_3 | CDS | 81975982 | 81976065 | 81975982 | ID=Msa0477660-mRNA-1:cds;Parent=Msa0477660-mRNA-1 |
| chr3_3 | CDS | 81975673 | 81975772 | 81975673 | ID=Msa0477660-mRNA-1:cds;Parent=Msa0477660-mRNA-1 |
| chr3_3 | CDS | 81975449 | 81975569 | 81975449 | ID=Msa0477660-mRNA-1:cds;Parent=Msa0477660-mRNA-1 |
| chr3_3 | CDS | 81975134 | 81975297 | 81975134 | ID=Msa0477660-mRNA-1:cds;Parent=Msa0477660-mRNA-1 |
| chr3_3 | CDS | 81974744 | 81974881 | 81974744 | ID=Msa0477660-mRNA-1:cds;Parent=Msa0477660-mRNA-1 |
| chr3_3 | CDS | 81974370 | 81974491 | 81974370 | ID=Msa0477660-mRNA-1:cds;Parent=Msa0477660-mRNA-1 |
| chr3_3 | CDS | 81974197 | 81974291 | 81974197 | ID=Msa0477660-mRNA-1:cds;Parent=Msa0477660-mRNA-1 |
| chr3_3 | CDS | 81973858 | 81973978 | 81973858 | ID=Msa0477660-mRNA-1:cds;Parent=Msa0477660-mRNA-1 |
| chr3_3 | CDS | 81973144 | 81973228 | 81973144 | ID=Msa0477660-mRNA-1:cds;Parent=Msa0477660-mRNA-1 |
| chr3_3 | three_prime_UTR | 81972706 | 81973143 | 81972706 | ID=Msa0477660-mRNA-1:three_prime_utr;Parent=Msa0477660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
