Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521720 | XP_013461985.1 | 98.472 | 458 | 4 | 1 | 1 | 455 | 1 | 458 | 0.0 | 923 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521720 | sp|P28011|AAT1_MEDSA | 99.761 | 418 | 1 | 0 | 38 | 455 | 1 | 418 | 0.0 | 855 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521720 | A0A072VCX2 | 98.472 | 458 | 4 | 1 | 1 | 455 | 1 | 458 | 0.0 | 923 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029700 | Msa0521720 | 0.824783 | 6.693894e-54 | -8.615850e-47 |
| Msa0033970 | Msa0521720 | 0.850810 | 1.334846e-60 | -8.615850e-47 |
| Msa0036560 | Msa0521720 | -0.826206 | 3.080272e-54 | -8.615850e-47 |
| Msa0038910 | Msa0521720 | -0.809441 | 1.889698e-50 | -8.615850e-47 |
| Msa0039890 | Msa0521720 | 0.808886 | 2.483914e-50 | -8.615850e-47 |
| Msa0048920 | Msa0521720 | -0.800773 | 1.231567e-48 | -8.615850e-47 |
| Msa0064960 | Msa0521720 | 0.800435 | 1.443038e-48 | -8.615850e-47 |
| Msa0073970 | Msa0521720 | 0.811767 | 5.936766e-51 | -8.615850e-47 |
| Msa0080020 | Msa0521720 | 0.820389 | 7.039447e-53 | -8.615850e-47 |
| Msa0081920 | Msa0521720 | 0.860123 | 2.571200e-63 | -8.615850e-47 |
| Msa0082240 | Msa0521720 | 0.808760 | 2.643476e-50 | -8.615850e-47 |
| Msa0082410 | Msa0521720 | 0.810475 | 1.131836e-50 | -8.615850e-47 |
| Msa0110240 | Msa0521720 | 0.820658 | 6.104656e-53 | -8.615850e-47 |
| Msa0113910 | Msa0521720 | -0.801643 | 8.173176e-49 | -8.615850e-47 |
| Msa0121970 | Msa0521720 | 0.812068 | 5.106382e-51 | -8.615850e-47 |
| Msa0124960 | Msa0521720 | 0.816178 | 6.320766e-52 | -8.615850e-47 |
| Msa0128030 | Msa0521720 | 0.862639 | 4.396267e-64 | -8.615850e-47 |
| Msa0128970 | Msa0521720 | 0.805535 | 1.273914e-49 | -8.615850e-47 |
| Msa0138340 | Msa0521720 | -0.819521 | 1.111816e-52 | -8.615850e-47 |
| Msa0139280 | Msa0521720 | -0.810195 | 1.300670e-50 | -8.615850e-47 |
| Msa0147960 | Msa0521720 | -0.820214 | 7.720925e-53 | -8.615850e-47 |
| Msa0154730 | Msa0521720 | 0.822296 | 2.556119e-53 | -8.615850e-47 |
| Msa0166620 | Msa0521720 | 0.818920 | 1.523946e-52 | -8.615850e-47 |
| Msa0172820 | Msa0521720 | -0.807348 | 5.280577e-50 | -8.615850e-47 |
| Msa0174810 | Msa0521720 | 0.841238 | 5.364281e-58 | -8.615850e-47 |
| Msa0180820 | Msa0521720 | 0.818787 | 1.633825e-52 | -8.615850e-47 |
| Msa0181140 | Msa0521720 | 0.809688 | 1.671692e-50 | -8.615850e-47 |
| Msa0181690 | Msa0521720 | -0.803654 | 3.143706e-49 | -8.615850e-47 |
| Msa0192890 | Msa0521720 | 0.808496 | 3.010358e-50 | -8.615850e-47 |
| Msa0207150 | Msa0521720 | -0.801098 | 1.056699e-48 | -8.615850e-47 |
| Msa0210850 | Msa0521720 | 0.811683 | 6.194015e-51 | -8.615850e-47 |
| Msa0236100 | Msa0521720 | -0.812907 | 3.347746e-51 | -8.615850e-47 |
| Msa0238140 | Msa0521720 | 0.801246 | 9.854910e-49 | -8.615850e-47 |
| Msa0368620 | Msa0521720 | 0.802089 | 6.619433e-49 | -8.615850e-47 |
| Msa0369660 | Msa0521720 | 0.840102 | 1.064350e-57 | -8.615850e-47 |
| Msa0381470 | Msa0521720 | 0.829771 | 4.271551e-55 | -8.615850e-47 |
| Msa0383110 | Msa0521720 | -0.805884 | 1.076177e-49 | -8.615850e-47 |
| Msa0383460 | Msa0521720 | 0.804232 | 2.385054e-49 | -8.615850e-47 |
| Msa0387300 | Msa0521720 | 0.981627 | 4.724922e-153 | -8.615850e-47 |
| Msa0409000 | Msa0521720 | -0.804888 | 1.740325e-49 | -8.615850e-47 |
| Msa0416040 | Msa0521720 | 0.807459 | 5.002387e-50 | -8.615850e-47 |
| Msa0417060 | Msa0521720 | 0.800748 | 1.246231e-48 | -8.615850e-47 |
| Msa0434140 | Msa0521720 | 0.987312 | 8.302342e-170 | -8.615850e-47 |
| Msa0437460 | Msa0521720 | 0.810981 | 8.797107e-51 | -8.615850e-47 |
| Msa0455830 | Msa0521720 | 0.825025 | 5.869236e-54 | -8.615850e-47 |
| Msa0463890 | Msa0521720 | 0.820318 | 7.306537e-53 | -8.615850e-47 |
| Msa0465420 | Msa0521720 | 0.811207 | 7.859050e-51 | -8.615850e-47 |
| Msa0477660 | Msa0521720 | 0.999319 | 6.889380e-303 | -8.615850e-47 |
| Msa0480260 | Msa0521720 | 0.801758 | 7.742363e-49 | -8.615850e-47 |
| Msa0480770 | Msa0521720 | 0.824762 | 6.771150e-54 | -8.615850e-47 |
| Msa0267230 | Msa0521720 | 0.804575 | 2.022541e-49 | -8.615850e-47 |
| Msa0268070 | Msa0521720 | 0.806229 | 9.104881e-50 | -8.615850e-47 |
| Msa0274000 | Msa0521720 | -0.803366 | 3.608120e-49 | -8.615850e-47 |
| Msa0274890 | Msa0521720 | -0.810127 | 1.344921e-50 | -8.615850e-47 |
| Msa0275570 | Msa0521720 | 0.803741 | 3.016716e-49 | -8.615850e-47 |
| Msa0314620 | Msa0521720 | -0.801960 | 7.035529e-49 | -8.615850e-47 |
| Msa0315010 | Msa0521720 | -0.801966 | 7.017422e-49 | -8.615850e-47 |
| Msa0319060 | Msa0521720 | -0.835515 | 1.604549e-56 | -8.615850e-47 |
| Msa0332790 | Msa0521720 | 0.811720 | 6.079327e-51 | -8.615850e-47 |
| Msa0497680 | Msa0521720 | 0.805518 | 1.284028e-49 | -8.615850e-47 |
| Msa0511280 | Msa0521720 | 0.809080 | 2.258264e-50 | -8.615850e-47 |
| Msa0511380 | Msa0521720 | 0.816861 | 4.444741e-52 | -8.615850e-47 |
| Msa0512430 | Msa0521720 | -0.806142 | 9.496214e-50 | -8.615850e-47 |
| Msa0518720 | Msa0521720 | -0.804811 | 1.805847e-49 | -8.615850e-47 |
| Msa0521720 | Msa0524570 | -0.812429 | 4.258586e-51 | -8.615850e-47 |
| Msa0521720 | Msa0527210 | -0.815107 | 1.095277e-51 | -8.615850e-47 |
| Msa0521720 | Msa0611300 | -0.801121 | 1.045646e-48 | -8.615850e-47 |
| Msa0521720 | Msa0621870 | -0.810604 | 1.061242e-50 | -8.615850e-47 |
| Msa0521720 | Msa0652700 | 0.826776 | 2.253315e-54 | -8.615850e-47 |
| Msa0521720 | Msa0677590 | -0.809861 | 1.534862e-50 | -8.615850e-47 |
| Msa0521720 | Msa0706130 | -0.800449 | 1.433707e-48 | -8.615850e-47 |
| Msa0521720 | Msa0721260 | 0.809022 | 2.323443e-50 | -8.615850e-47 |
| Msa0521720 | Msa0735340 | 0.805042 | 1.616100e-49 | -8.615850e-47 |
| Msa0521720 | Msa0749500 | 0.827724 | 1.335754e-54 | -8.615850e-47 |
| Msa0521720 | Msa0749510 | 0.834480 | 2.924655e-56 | -8.615850e-47 |
| Msa0521720 | Msa0753410 | 0.806690 | 7.278749e-50 | -8.615850e-47 |
| Msa0521720 | Msa0777210 | 0.807201 | 5.673175e-50 | -8.615850e-47 |
| Msa0521720 | Msa0793910 | 0.827818 | 1.267723e-54 | -8.615850e-47 |
| Msa0521720 | Msa0814350 | 0.807453 | 5.018176e-50 | -8.615850e-47 |
| Msa0521720 | Msa0831430 | 0.829492 | 4.994418e-55 | -8.615850e-47 |
| Msa0521720 | Msa0833150 | -0.830949 | 2.200891e-55 | -8.615850e-47 |
| Msa0521720 | Msa0841550 | 0.805901 | 1.067032e-49 | -8.615850e-47 |
| Msa0521720 | Msa0856790 | -0.806906 | 6.550574e-50 | -8.615850e-47 |
| Msa0521720 | Msa0866320 | -0.806263 | 8.956564e-50 | -8.615850e-47 |
| Msa0521720 | Msa0945230 | 0.824160 | 9.382545e-54 | -8.615850e-47 |
| Msa0521720 | Msa0947420 | 0.830639 | 2.621772e-55 | -8.615850e-47 |
| Msa0521720 | Msa0973000 | 0.805598 | 1.235706e-49 | -8.615850e-47 |
| Msa0521720 | Msa0974570 | -0.815549 | 8.732926e-52 | -8.615850e-47 |
| Msa0521720 | Msa0979050 | 0.808746 | 2.661247e-50 | -8.615850e-47 |
| Msa0521720 | Msa1039650 | 0.817364 | 3.426761e-52 | -8.615850e-47 |
| Msa0521720 | Msa1055490 | -0.800330 | 1.515977e-48 | -8.615850e-47 |
| Msa0521720 | Msa1084340 | -0.809287 | 2.038968e-50 | -8.615850e-47 |
| Msa0521720 | Msa1106760 | -0.822341 | 2.495097e-53 | -8.615850e-47 |
| Msa0521720 | Msa1112040 | 0.809359 | 1.967509e-50 | -8.615850e-47 |
| Msa0521720 | Msa1120320 | 0.827303 | 1.685229e-54 | -8.615850e-47 |
| Msa0521720 | Msa1126980 | -0.813167 | 2.935355e-51 | -8.615850e-47 |
| Msa0521720 | Msa1150750 | 0.800076 | 1.707746e-48 | -8.615850e-47 |
| Msa0521720 | Msa1154310 | 0.809516 | 1.820643e-50 | -8.615850e-47 |
| Msa0521720 | Msa1157200 | 0.802452 | 5.573284e-49 | -8.615850e-47 |
| Msa0521720 | Msa1174450 | 0.846289 | 2.384683e-59 | -8.615850e-47 |
| Msa0521720 | Msa1187160 | 0.812126 | 4.960440e-51 | -8.615850e-47 |
| Msa0521720 | Msa1204240 | 0.803625 | 3.188747e-49 | -8.615850e-47 |
| Msa0521720 | Msa1213860 | 0.809658 | 1.697026e-50 | -8.615850e-47 |
| Msa0521720 | Msa1219790 | 0.802202 | 6.273449e-49 | -8.615850e-47 |
| Msa0521720 | Msa1223060 | -0.812954 | 3.268371e-51 | -8.615850e-47 |
| Msa0521720 | Msa1223600 | -0.814984 | 1.166064e-51 | -8.615850e-47 |
| Msa0521720 | Msa1225280 | -0.801687 | 8.004511e-49 | -8.615850e-47 |
| Msa0521720 | Msa1235960 | -0.803717 | 3.051414e-49 | -8.615850e-47 |
| Msa0521720 | Msa1235990 | -0.806595 | 7.623040e-50 | -8.615850e-47 |
| Msa0521720 | Msa1251500 | 0.815284 | 1.000090e-51 | -8.615850e-47 |
| Msa0521720 | Msa1265990 | -0.808801 | 2.591239e-50 | -8.615850e-47 |
| Msa0521720 | Msa1267080 | 0.804940 | 1.696779e-49 | -8.615850e-47 |
| Msa0521720 | Msa1269370 | -0.802317 | 5.941755e-49 | -8.615850e-47 |
| Msa0521720 | Msa1276400 | 0.802581 | 5.240990e-49 | -8.615850e-47 |
| Msa0521720 | Msa1282640 | 0.821660 | 3.588013e-53 | -8.615850e-47 |
| Msa0521720 | Msa1314810 | 0.841475 | 4.645996e-58 | -8.615850e-47 |
| Msa0521720 | Msa1316090 | -0.815564 | 8.666303e-52 | -8.615850e-47 |
| Msa0521720 | Msa1321840 | 0.814936 | 1.195362e-51 | -8.615850e-47 |
| Msa0521720 | Msa1339520 | -0.802176 | 6.350638e-49 | -8.615850e-47 |
| Msa0521720 | Msa1357090 | -0.813927 | 1.998100e-51 | -8.615850e-47 |
| Msa0521720 | Msa1359520 | 0.802084 | 6.634405e-49 | -8.615850e-47 |
| Msa0521720 | Msa1370820 | 0.807592 | 4.689349e-50 | -8.615850e-47 |
| Msa0521720 | Msa1371540 | -0.812831 | 3.478417e-51 | -8.615850e-47 |
| Msa0521720 | Msa1375730 | 0.805501 | 1.294877e-49 | -8.615850e-47 |
| Msa0521720 | Msa1398110 | 0.807938 | 3.958748e-50 | -8.615850e-47 |
| Msa0521720 | Msa1412810 | -0.806008 | 1.013131e-49 | -8.615850e-47 |
| Msa0521720 | Msa1426690 | -0.805313 | 1.417779e-49 | -8.615850e-47 |
| Msa0521720 | Msa1449510 | -0.808233 | 3.424269e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521720 | MtrunA17_Chr3g0139821 | 98.472 | 458 | 4 | 1 | 1 | 455 | 1 | 458 | 0.0 | 923 |
| Msa0521720 | MtrunA17_Chr1g0149721 | 54.436 | 417 | 188 | 2 | 32 | 447 | 42 | 457 | 1.73e-164 | 471 |
| Msa0521720 | MtrunA17_Chr4g0041371 | 51.005 | 398 | 193 | 1 | 53 | 450 | 25 | 420 | 6.26e-146 | 423 |
| Msa0521720 | MtrunA17_Chr4g0041351 | 53.448 | 232 | 108 | 0 | 219 | 450 | 3 | 234 | 2.64e-88 | 269 |
| Msa0521720 | MtrunA17_Chr4g0041361 | 41.481 | 135 | 76 | 2 | 53 | 186 | 20 | 152 | 4.19e-26 | 103 |
| Msa0521720 | MtrunA17_Chr4g0005811 | 50.000 | 54 | 27 | 0 | 325 | 378 | 23 | 76 | 4.46e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521720 | AT5G11520.1 | 79.310 | 435 | 90 | 0 | 19 | 453 | 13 | 447 | 0.0 | 743 |
| Msa0521720 | AT5G19550.1 | 82.921 | 404 | 69 | 0 | 52 | 455 | 2 | 405 | 0.0 | 717 |
| Msa0521720 | AT1G62800.2 | 72.772 | 404 | 110 | 0 | 52 | 455 | 2 | 405 | 0.0 | 641 |
| Msa0521720 | AT1G62800.1 | 72.277 | 404 | 110 | 1 | 52 | 455 | 2 | 403 | 0.0 | 633 |
| Msa0521720 | AT1G62800.3 | 70.710 | 338 | 99 | 0 | 52 | 389 | 2 | 339 | 0.0 | 526 |
| Msa0521720 | AT4G31990.1 | 54.545 | 396 | 178 | 2 | 53 | 447 | 51 | 445 | 1.12e-160 | 462 |
| Msa0521720 | AT4G31990.2 | 54.545 | 396 | 178 | 2 | 53 | 447 | 51 | 445 | 1.12e-160 | 462 |
| Msa0521720 | AT4G31990.4 | 54.545 | 396 | 178 | 2 | 53 | 447 | 46 | 440 | 1.22e-160 | 461 |
| Msa0521720 | AT4G31990.3 | 54.545 | 396 | 178 | 2 | 53 | 447 | 51 | 445 | 2.30e-160 | 461 |
| Msa0521720 | AT2G30970.1 | 52.174 | 391 | 185 | 1 | 61 | 451 | 39 | 427 | 2.61e-147 | 427 |
| Msa0521720 | AT2G30970.2 | 52.174 | 391 | 185 | 1 | 61 | 451 | 39 | 427 | 2.61e-147 | 427 |
Find 158 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAATCTTTGTATGGTTT+TGG | 0.106318 | 3_4:-74684928 | Msa0521720:three_prime_UTR |
| AGGAATGTATTCTTAATTTA+AGG | 0.133082 | 3_4:-74684835 | Msa0521720:three_prime_UTR |
| ACACCCAAGTTGAGCTTAAT+TGG | 0.150989 | 3_4:+74688937 | None:intergenic |
| GCGAAGAACATGGGTCTTTA+TGG | 0.189310 | 3_4:-74686858 | Msa0521720:CDS |
| CAAGAAAGAAAGAAACTTTA+TGG | 0.229625 | 3_4:+74689728 | None:intergenic |
| ATGTATTATTTCCTTGGTTT+TGG | 0.230843 | 3_4:+74689634 | None:intergenic |
| TTTCTTTGACAGTGCTTATC+AGG | 0.256759 | 3_4:-74687217 | Msa0521720:intron |
| AGTCACATTATCAAGCAAAT+TGG | 0.295698 | 3_4:-74686028 | Msa0521720:CDS |
| ACCACTGTTCAAGGCTTATC+TGG | 0.296478 | 3_4:-74687809 | Msa0521720:CDS |
| TTGAAAACTCTCTCTATATA+TGG | 0.304585 | 3_4:+74689753 | None:intergenic |
| AGCCAGATGTGGGACTGTTT+TGG | 0.314178 | 3_4:+74685269 | None:intergenic |
| AACGACTCTGTCGTAGGATT+TGG | 0.314966 | 3_4:-74684984 | Msa0521720:three_prime_UTR |
| TTTCCTTGTACATCTGTTGC+AGG | 0.318165 | 3_4:-74685049 | Msa0521720:three_prime_UTR |
| GCCCTGCTATTCAAGAGAAC+AGG | 0.323064 | 3_4:-74687835 | Msa0521720:CDS |
| AAGTCAAGCCCTCGTGTTGC+TGG | 0.342959 | 3_4:+74687538 | None:intergenic |
| CATCAGATGTCAGGTATATA+TGG | 0.350575 | 3_4:+74685948 | None:intergenic |
| TATTCTATGTATTATTTCCT+TGG | 0.356130 | 3_4:+74689628 | None:intergenic |
| GATCTTGGTTCTGCCCCATC+TGG | 0.359579 | 3_4:-74687348 | Msa0521720:CDS |
| AATAAAGGTTTCATTGTTGA+TGG | 0.361569 | 3_4:+74685148 | None:intergenic |
| TACTCAAGTCCTCCTATTCA+TGG | 0.370617 | 3_4:-74686492 | Msa0521720:CDS |
| AAGGAGTATATTCCAATTGT+TGG | 0.372264 | 3_4:-74688118 | Msa0521720:CDS |
| TGTACAAGGAAAGTTCTCTA+TGG | 0.378140 | 3_4:+74685060 | None:intergenic |
| TGCTGATGGTGGAGAATTGC+TGG | 0.380748 | 3_4:-74686895 | Msa0521720:CDS |
| ACAGGACTTCTTGAGGATCT+TGG | 0.382872 | 3_4:-74687363 | Msa0521720:intron |
| TATACTTGCCAACACCTACT+TGG | 0.385684 | 3_4:-74687624 | Msa0521720:CDS |
| GTACTGGTTCGCTAAGAGTT+GGG | 0.400671 | 3_4:-74687787 | Msa0521720:CDS |
| AAGAGTCTCAAATCTTTGTA+TGG | 0.405439 | 3_4:-74684934 | Msa0521720:three_prime_UTR |
| CACCCAAGTTGAGCTTAATT+GGG | 0.413455 | 3_4:+74688938 | None:intergenic |
| GGAATGTATTCTTAATTTAA+GGG | 0.415133 | 3_4:-74684834 | Msa0521720:three_prime_UTR |
| TATTTCCTATGAGAACTTAA+CGG | 0.421876 | 3_4:+74685020 | None:intergenic |
| TATGGAGTAATGAATTTGTT+TGG | 0.425873 | 3_4:+74689771 | None:intergenic |
| CTCCAAAACAGTCCCACATC+TGG | 0.425931 | 3_4:-74685271 | Msa0521720:CDS |
| ATTGGAATGTTTACTTTCAC+AGG | 0.428060 | 3_4:-74686010 | Msa0521720:CDS |
| ATCTTATCGCATTCTTACCT+TGG | 0.428749 | 3_4:+74689900 | None:intergenic |
| GTTCAAGGCTTATCTGGTAC+TGG | 0.432196 | 3_4:-74687803 | Msa0521720:CDS |
| ACACCGAGGATAGGATCTTC+AGG | 0.432488 | 3_4:+74689414 | None:intergenic |
| ATACTTGCCAACACCTACTT+GGG | 0.432758 | 3_4:-74687623 | Msa0521720:CDS |
| AAGTTGAGCTTAATTGGGCT+TGG | 0.436518 | 3_4:+74688943 | None:intergenic |
| AGGAGTATATTCCAATTGTT+GGG | 0.451682 | 3_4:-74688117 | Msa0521720:CDS |
| TGCAGGAGGATTAGCATGGC+TGG | 0.453349 | 3_4:-74685300 | Msa0521720:intron |
| AACAGGGTTACCACTGTTCA+AGG | 0.453722 | 3_4:-74687818 | Msa0521720:CDS |
| GTAATGAATTTGTTTGGTTG+TGG | 0.455458 | 3_4:+74689777 | None:intergenic |
| GTTGTTGATTCGAGAATAAC+CGG | 0.456808 | 3_4:+74689588 | None:intergenic |
| ACCCTGTTCTCTTGAATAGC+AGG | 0.458243 | 3_4:+74687833 | None:intergenic |
| GTTCGTTTGTTTGTTGCTGA+TGG | 0.463816 | 3_4:-74686909 | Msa0521720:CDS |
| GTTTCCTCTTACAAAAGAAA+AGG | 0.465093 | 3_4:-74684897 | Msa0521720:three_prime_UTR |
| TGATCCAACGCTTGAACAAT+GGG | 0.468112 | 3_4:-74687280 | Msa0521720:CDS |
| CCATGTTCTTCGCATAACTC+TGG | 0.469261 | 3_4:+74686868 | None:intergenic |
| AAATCAGCGAGCCCAACAAT+TGG | 0.471038 | 3_4:+74688106 | None:intergenic |
| ACACGAGGGCTTGACTTTCA+AGG | 0.475131 | 3_4:-74687532 | Msa0521720:intron |
| CATATATACCTGACATCTGA+TGG | 0.476268 | 3_4:-74685947 | Msa0521720:CDS |
| TGACTGGACTATTGAGTTGA+AGG | 0.476617 | 3_4:-74686346 | Msa0521720:CDS |
| ACAATGGATGCACCATGAAT+AGG | 0.476661 | 3_4:+74686480 | None:intergenic |
| CATTGAAATTTAAGCAACTC+GGG | 0.476742 | 3_4:+74685224 | None:intergenic |
| TGCTCCCATTGTTCAAGCGT+TGG | 0.479098 | 3_4:+74687276 | None:intergenic |
| GGTACTGGTTCGCTAAGAGT+TGG | 0.481361 | 3_4:-74687788 | Msa0521720:CDS |
| GTCAAGATGGAAACTTGCTC+AGG | 0.481636 | 3_4:+74685980 | None:intergenic |
| AATAGGAGGACTTGAGTACA+TGG | 0.483790 | 3_4:+74686497 | None:intergenic |
| GCCAACTGAAACTTGTGATT+AGG | 0.484457 | 3_4:-74686521 | Msa0521720:CDS |
| AATTTAAGGGTTTGACATTG+TGG | 0.484882 | 3_4:-74684821 | Msa0521720:three_prime_UTR |
| TCAGGGATTTGTACAATGAC+TGG | 0.487365 | 3_4:-74686362 | Msa0521720:intron |
| ATGGTACTCTTTAGTCAAGA+TGG | 0.489731 | 3_4:+74685967 | None:intergenic |
| CGTTAACGATCAAAATCAAA+TGG | 0.490670 | 3_4:-74689505 | Msa0521720:CDS |
| TTGATCCAACGCTTGAACAA+TGG | 0.495724 | 3_4:-74687281 | Msa0521720:CDS |
| CTAACATGTCATTCAATAGT+TGG | 0.496646 | 3_4:+74688242 | None:intergenic |
| GTACAAGGAAAGTTCTCTAT+GGG | 0.497001 | 3_4:+74685061 | None:intergenic |
| GAATAGGTACACCAGGTGAT+TGG | 0.497772 | 3_4:-74686051 | Msa0521720:intron |
| TCAGCAACAAACAAACGAAC+AGG | 0.500179 | 3_4:+74686912 | None:intergenic |
| TCAGAAGAAGCGGTTGGAGA+AGG | 0.502905 | 3_4:+74689465 | None:intergenic |
| TACTGGTTCGCTAAGAGTTG+GGG | 0.504319 | 3_4:-74687786 | Msa0521720:CDS |
| GAGAGCCGTTAAGTTCTCAT+AGG | 0.505623 | 3_4:-74685025 | Msa0521720:three_prime_UTR |
| TGTCTTACCCATCAGATGTC+AGG | 0.505685 | 3_4:+74685939 | None:intergenic |
| TCACTACCTGTCCTTGAGAA+TGG | 0.510089 | 3_4:+74686452 | None:intergenic |
| GACACGTGATAACAATAAGA+AGG | 0.512866 | 3_4:-74689813 | Msa0521720:five_prime_UTR |
| ATTCTTCTTCACCTGATCGC+AGG | 0.513737 | 3_4:-74689557 | Msa0521720:CDS |
| ATAAAGGTTTCATTGTTGAT+GGG | 0.514495 | 3_4:+74685149 | None:intergenic |
| TTCCTTGTACATCTGTTGCA+GGG | 0.516268 | 3_4:-74685048 | Msa0521720:three_prime_UTR |
| AAGCCCAATTAAGCTCAACT+TGG | 0.516784 | 3_4:-74688941 | Msa0521720:CDS |
| CGTTTGTTTGTTGCTGATGG+TGG | 0.521870 | 3_4:-74686906 | Msa0521720:CDS |
| CCAGAGTTATGCGAAGAACA+TGG | 0.522554 | 3_4:-74686868 | Msa0521720:CDS |
| CTTGAGAATGGCGGCCACAA+TGG | 0.525791 | 3_4:+74686464 | None:intergenic |
| ATTAAGCTCAACTTGGGTGT+TGG | 0.529955 | 3_4:-74688934 | Msa0521720:CDS |
| ATAGTGTTTAGCCTGCGATC+AGG | 0.535819 | 3_4:+74689546 | None:intergenic |
| ACGAACGAGATGAGCGAAGA+CGG | 0.543404 | 3_4:+74689440 | None:intergenic |
| ATCTGCATCTAGACTTCCAC+TGG | 0.543479 | 3_4:+74686941 | None:intergenic |
| TTATCAATTCATCCCCGTGA+TGG | 0.545641 | 3_4:-74685197 | Msa0521720:three_prime_UTR |
| CATGTTCTTCGCATAACTCT+GGG | 0.545873 | 3_4:+74686869 | None:intergenic |
| TGGCCGCCATTCTCAAGGAC+AGG | 0.547950 | 3_4:-74686458 | Msa0521720:intron |
| ATAAGATTCTAACCTCAGTT+CGG | 0.549064 | 3_4:+74688905 | None:intergenic |
| TGATAAGCACTGTCAAAGAA+AGG | 0.550216 | 3_4:+74687219 | None:intergenic |
| TTTGTATGATTGCCCCAAGT+AGG | 0.551425 | 3_4:+74687610 | None:intergenic |
| AGTCAGCGGATGTTTCAAGC+AGG | 0.552000 | 3_4:-74686551 | Msa0521720:CDS |
| GTTCCTTACAGGACTTCTTG+AGG | 0.552621 | 3_4:-74687370 | Msa0521720:intron |
| ATACTCTCGTGAACTTTATG+CGG | 0.553386 | 3_4:+74689698 | None:intergenic |
| ACATTGAAATTTAAGCAACT+CGG | 0.554651 | 3_4:+74685223 | None:intergenic |
| GCCTAATCACAAGTTTCAGT+TGG | 0.558972 | 3_4:+74686520 | None:intergenic |
| TCAATTCATCCCCGTGATGG+TGG | 0.561810 | 3_4:-74685194 | Msa0521720:three_prime_UTR |
| GCAAAACAACAGATCCAGAT+GGG | 0.564621 | 3_4:+74687334 | None:intergenic |
| ATGTACTAGTAGTAGTCGGC+GGG | 0.565587 | 3_4:+74689867 | None:intergenic |
| ACACGTGATAACAATAAGAA+GGG | 0.569930 | 3_4:-74689812 | Msa0521720:five_prime_UTR |
| TTTGATGCTTTACGTGCTAG+AGG | 0.574452 | 3_4:-74686285 | Msa0521720:intron |
| ACGGAATCAGAAGAAGCGGT+TGG | 0.574811 | 3_4:+74689459 | None:intergenic |
| TGAAATGCTTACAATGCTCA+AGG | 0.575001 | 3_4:+74686821 | None:intergenic |
| TATATACAGCATGCGCCCAC+CGG | 0.578843 | 3_4:-74689607 | Msa0521720:exon |
| CATTGTGGCCGCCATTCTCA+AGG | 0.579863 | 3_4:-74686463 | Msa0521720:CDS |
| GGAAGGTAAACCCCTTGTGT+TGG | 0.582281 | 3_4:-74688287 | Msa0521720:CDS |
| GCTCCTGAAGATCCTATCCT+CGG | 0.583735 | 3_4:-74689417 | Msa0521720:CDS |
| TGCAATTGAATAGGTACACC+AGG | 0.584729 | 3_4:-74686058 | Msa0521720:intron |
| CCCTGCTATTCAAGAGAACA+GGG | 0.585827 | 3_4:-74687834 | Msa0521720:CDS |
| TACTATGCTCCAGCAACACG+AGG | 0.591280 | 3_4:-74687547 | Msa0521720:CDS |
| AGCGTTGGATCAACACCAGT+AGG | 0.595444 | 3_4:+74687291 | None:intergenic |
| GGTCTTTATGGTGAACGTGT+TGG | 0.597249 | 3_4:-74686846 | Msa0521720:CDS |
| AGCCCAATTAAGCTCAACTT+GGG | 0.600473 | 3_4:-74688940 | Msa0521720:CDS |
| TCCTTGTACATCTGTTGCAG+GGG | 0.601080 | 3_4:-74685047 | Msa0521720:three_prime_UTR |
| CCCTGTTCTCTTGAATAGCA+GGG | 0.601948 | 3_4:+74687834 | None:intergenic |
| GCCTCACAACATCCAACACA+AGG | 0.602594 | 3_4:+74688275 | None:intergenic |
| ATATATACCTGACATCTGAT+GGG | 0.603581 | 3_4:-74685946 | Msa0521720:intron |
| TCCCCTGCAACAGATGTACA+AGG | 0.603932 | 3_4:+74685046 | None:intergenic |
| GCATGTGCACATAACCCTAC+TGG | 0.605334 | 3_4:-74687306 | Msa0521720:CDS |
| AACAAACATACACCGAGGAT+AGG | 0.605565 | 3_4:+74689405 | None:intergenic |
| ACCAGATAAGCCTTGAACAG+TGG | 0.611040 | 3_4:+74687808 | None:intergenic |
| GTCAGCGGATGTTTCAAGCA+GGG | 0.615517 | 3_4:-74686550 | Msa0521720:CDS |
| TATTCATGGTGCATCCATTG+TGG | 0.615918 | 3_4:-74686478 | Msa0521720:CDS |
| AGCAAAACAACAGATCCAGA+TGG | 0.618409 | 3_4:+74687333 | None:intergenic |
| GACTATTGAGTTGAAGGCAA+TGG | 0.618768 | 3_4:-74686340 | Msa0521720:CDS |
| CAGAGTTATGCGAAGAACAT+GGG | 0.621421 | 3_4:-74686867 | Msa0521720:CDS |
| ATGGATGCACCATGAATAGG+AGG | 0.622449 | 3_4:+74686483 | None:intergenic |
| TTGGAATGTTTACTTTCACA+GGG | 0.622534 | 3_4:-74686009 | Msa0521720:CDS |
| GCGTTGGATCAACACCAGTA+GGG | 0.625083 | 3_4:+74687292 | None:intergenic |
| TATCATGTACTAGTAGTAGT+CGG | 0.626705 | 3_4:+74689863 | None:intergenic |
| TGTATTGCATCAGCCAGATG+TGG | 0.629141 | 3_4:+74685258 | None:intergenic |
| ATTGTGCAGGAGGATTAGCA+TGG | 0.631015 | 3_4:-74685304 | Msa0521720:intron |
| TCCCCAGGTCAGCAAGTCAG+CGG | 0.637569 | 3_4:-74686565 | Msa0521720:intron |
| ACAAGGAAAGTTCTCTATGG+GGG | 0.640003 | 3_4:+74685063 | None:intergenic |
| GTATTGCATCAGCCAGATGT+GGG | 0.644231 | 3_4:+74685259 | None:intergenic |
| CATGTACTAGTAGTAGTCGG+CGG | 0.644931 | 3_4:+74689866 | None:intergenic |
| GAAGACGGAATCAGAAGAAG+CGG | 0.647565 | 3_4:+74689455 | None:intergenic |
| CCCTTGTGTTGGATGTTGTG+AGG | 0.649198 | 3_4:-74688276 | Msa0521720:CDS |
| CAAGGAAAGTTCTCTATGGG+GGG | 0.649471 | 3_4:+74685064 | None:intergenic |
| GGTAACTGTCGCTTACAACA+AGG | 0.650998 | 3_4:-74688968 | Msa0521720:CDS |
| TTGATTCGAGAATAACCGGT+GGG | 0.652226 | 3_4:+74689592 | None:intergenic |
| TACTTGGGGCAATCATACAA+AGG | 0.652701 | 3_4:-74687608 | Msa0521720:CDS |
| CTCACAACATCCAACACAAG+GGG | 0.662888 | 3_4:+74688277 | None:intergenic |
| TGATTGCCCCAAGTAGGTGT+TGG | 0.664181 | 3_4:+74687616 | None:intergenic |
| TACAAGGAAAGTTCTCTATG+GGG | 0.668083 | 3_4:+74685062 | None:intergenic |
| TACTTGCCAACACCTACTTG+GGG | 0.669923 | 3_4:-74687622 | Msa0521720:CDS |
| TGTTGGTGCTTACCGAACTG+AGG | 0.670501 | 3_4:-74688917 | Msa0521720:intron |
| CACGTGATAACAATAAGAAG+GGG | 0.677453 | 3_4:-74689811 | Msa0521720:five_prime_UTR |
| TTAAATAGGAACCAAAACCA+AGG | 0.677482 | 3_4:-74689645 | Msa0521720:five_prime_UTR |
| ATAATGTGACTCCAATCACC+TGG | 0.679037 | 3_4:+74686040 | None:intergenic |
| CCTCACAACATCCAACACAA+GGG | 0.691571 | 3_4:+74688276 | None:intergenic |
| ACTGGTTCGCTAAGAGTTGG+GGG | 0.694356 | 3_4:-74687785 | Msa0521720:CDS |
| CTACCTGTCCTTGAGAATGG+CGG | 0.699592 | 3_4:+74686455 | None:intergenic |
| GTTGATTCGAGAATAACCGG+TGG | 0.704516 | 3_4:+74689591 | None:intergenic |
| ACTATGCTCCAGCAACACGA+GGG | 0.711939 | 3_4:-74687546 | Msa0521720:CDS |
| CAAAACAACAGATCCAGATG+GGG | 0.713598 | 3_4:+74687335 | None:intergenic |
| ATAGGAGGACTTGAGTACAT+GGG | 0.714033 | 3_4:+74686498 | None:intergenic |
| AGAGAGAAGAACGAAAACCA+AGG | 0.718446 | 3_4:-74689917 | Msa0521720:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAAATTAAATTTAAAT+AGG | - | chr3_4:74685058-74685077 | Msa0521720:three_prime_UTR | 0.0% |
| !!! | TAATTTTAAAATATGTAGAA+AGG | + | chr3_4:74685049-74685068 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAAAAACAG+AGG | + | chr3_4:74685697-74685716 | None:intergenic | 10.0% |
| !!! | ATTTTTAAATTATTATGCAT+TGG | + | chr3_4:74685917-74685936 | None:intergenic | 10.0% |
| !! | ATGCATAATAATTTAAAAAT+TGG | - | chr3_4:74685917-74685936 | Msa0521720:intron | 10.0% |
| !! | TTAGTTAAAAAAATATAAAG+GGG | + | chr3_4:74687014-74687033 | None:intergenic | 10.0% |
| !!! | AAGAATTTATTTTGTTATTA+AGG | - | chr3_4:74689057-74689076 | Msa0521720:intron | 10.0% |
| !!! | GAATTTTTTTTTTTTTTTGG+TGG | + | chr3_4:74686815-74686834 | None:intergenic | 15.0% |
| !!! | ATTAAATGGAGATAATTTTA+TGG | - | chr3_4:74687923-74687942 | Msa0521720:intron | 15.0% |
| !!! | TTAAATGGAGATAATTTTAT+GGG | - | chr3_4:74687924-74687943 | Msa0521720:intron | 15.0% |
| !!! | CATTTTTTTGACAAAAAATA+AGG | - | chr3_4:74689846-74689865 | Msa0521720:five_prime_UTR | 15.0% |
| !!! | TTTTAAAATATGTAGAAAGG+TGG | + | chr3_4:74685046-74685065 | None:intergenic | 20.0% |
| !! | TATTCTATGTATTATTTCCT+TGG | + | chr3_4:74685092-74685111 | None:intergenic | 20.0% |
| !!! | AATCATCAGTAACAAAATTT+TGG | + | chr3_4:74685660-74685679 | None:intergenic | 20.0% |
| !!! | AGGTTAGAATCTTATTTATT+TGG | - | chr3_4:74685820-74685839 | Msa0521720:intron | 20.0% |
| !!! | GGTTAGAATCTTATTTATTT+GGG | - | chr3_4:74685821-74685840 | Msa0521720:intron | 20.0% |
| !!! | TGTTTTCTCATAAACTATTT+TGG | - | chr3_4:74686103-74686122 | Msa0521720:intron | 20.0% |
| !!! | GTTTTCTCATAAACTATTTT+GGG | - | chr3_4:74686104-74686123 | Msa0521720:intron | 20.0% |
| !!! | TTTTCTCATAAACTATTTTG+GGG | - | chr3_4:74686105-74686124 | Msa0521720:intron | 20.0% |
| !! | AATATCACAAATCTTATGTT+AGG | - | chr3_4:74686199-74686218 | Msa0521720:intron | 20.0% |
| !!! | TAATCATCTTTTGCATAATT+TGG | - | chr3_4:74686264-74686283 | Msa0521720:intron | 20.0% |
| !! | TCAATACTCAATAACATAAT+TGG | - | chr3_4:74687295-74687314 | Msa0521720:CDS | 20.0% |
| !! | CATAATTGGATTTCATTTAA+TGG | - | chr3_4:74687309-74687328 | Msa0521720:CDS | 20.0% |
| !! | TTCAATAAAAGAATATGCAT+TGG | + | chr3_4:74687713-74687732 | None:intergenic | 20.0% |
| !! | TTATTAACAGCAAAAGAAAT+TGG | + | chr3_4:74688922-74688941 | None:intergenic | 20.0% |
| !!! | ATTTATTTTGTTATTAAGGC+TGG | - | chr3_4:74689061-74689080 | Msa0521720:intron | 20.0% |
| !! | TACATACTTTCAAAAATCTT+TGG | + | chr3_4:74689179-74689198 | None:intergenic | 20.0% |
| !! | AAATGAATGATTACACATAA+GGG | + | chr3_4:74689354-74689373 | None:intergenic | 20.0% |
| !! | TAAATGAATGATTACACATA+AGG | + | chr3_4:74689355-74689374 | None:intergenic | 20.0% |
| !! | AGGAATGTATTCTTAATTTA+AGG | - | chr3_4:74689882-74689901 | Msa0521720:five_prime_UTR | 20.0% |
| !! | GGAATGTATTCTTAATTTAA+GGG | - | chr3_4:74689883-74689902 | Msa0521720:five_prime_UTR | 20.0% |
| !! | TATGGAGTAATGAATTTGTT+TGG | + | chr3_4:74684949-74684968 | None:intergenic | 25.0% |
| ! | TTGAAAACTCTCTCTATATA+TGG | + | chr3_4:74684967-74684986 | None:intergenic | 25.0% |
| ! | CAAGAAAGAAAGAAACTTTA+TGG | + | chr3_4:74684992-74685011 | None:intergenic | 25.0% |
| !! | ATGTATTATTTCCTTGGTTT+TGG | + | chr3_4:74685086-74685105 | None:intergenic | 25.0% |
| !! | AATCTTATTTATTTGGGATG+TGG | - | chr3_4:74685827-74685846 | Msa0521720:intron | 25.0% |
| !!! | GTCTTCATTCTGAAATATAT+AGG | - | chr3_4:74685986-74686005 | Msa0521720:CDS | 25.0% |
| !! | TGAAATATATAGGCATTGTT+TGG | - | chr3_4:74685996-74686015 | Msa0521720:CDS | 25.0% |
| ! | ACTCTTTCTTTACTATCAAA+TGG | + | chr3_4:74686077-74686096 | None:intergenic | 25.0% |
| ! | AAAAGATGATTATGCAGTAT+AGG | + | chr3_4:74686256-74686275 | None:intergenic | 25.0% |
| !! | AAAAGAAAGTATAGTGAATC+AGG | + | chr3_4:74686503-74686522 | None:intergenic | 25.0% |
| ! | AGTTATGCATAATTTATGCA+AGG | - | chr3_4:74686778-74686797 | Msa0521720:intron | 25.0% |
| ! | TAATATTGCTGTATATCGTT+GGG | - | chr3_4:74687031-74687050 | Msa0521720:intron | 25.0% |
| ! | TTGATACAAATGCGAAAATA+AGG | + | chr3_4:74687247-74687266 | None:intergenic | 25.0% |
| ! | TATTGATCATGATGCATATT+GGG | + | chr3_4:74687281-74687300 | None:intergenic | 25.0% |
| ! | AAGATTCAAGAGATTAGAAA+TGG | + | chr3_4:74687620-74687639 | None:intergenic | 25.0% |
| !!! | ACATCTATTTTTGTTCAACA+GGG | - | chr3_4:74687748-74687767 | Msa0521720:intron | 25.0% |
| !! | AAGCATTTCAAAGCATTAAA+TGG | - | chr3_4:74687909-74687928 | Msa0521720:intron | 25.0% |
| ! | GGGAAAAAATCATATTGAAT+GGG | + | chr3_4:74687990-74688009 | None:intergenic | 25.0% |
| ! | AGGGAAAAAATCATATTGAA+TGG | + | chr3_4:74687991-74688010 | None:intergenic | 25.0% |
| !! | TTTTTCTACATAAAGAAGCT+TGG | - | chr3_4:74688070-74688089 | Msa0521720:CDS | 25.0% |
| ! | ATTGTAGAAAAGGAAAATCA+GGG | + | chr3_4:74688126-74688145 | None:intergenic | 25.0% |
| ! | TATTGTAGAAAAGGAAAATC+AGG | + | chr3_4:74688127-74688146 | None:intergenic | 25.0% |
| ! | CAACTCAAATAAATGTTTCA+TGG | + | chr3_4:74688626-74688645 | None:intergenic | 25.0% |
| ! | TGACTTGATTAAGAGAATAA+TGG | + | chr3_4:74688991-74689010 | None:intergenic | 25.0% |
| !!! | GTTGCATTCTTTTTAGTTTA+AGG | - | chr3_4:74689235-74689254 | Msa0521720:intron | 25.0% |
| ! | ACATTGAAATTTAAGCAACT+CGG | + | chr3_4:74689497-74689516 | None:intergenic | 25.0% |
| ! | ATAAAGGTTTCATTGTTGAT+GGG | + | chr3_4:74689571-74689590 | None:intergenic | 25.0% |
| ! | AATAAAGGTTTCATTGTTGA+TGG | + | chr3_4:74689572-74689591 | None:intergenic | 25.0% |
| !!! | TGATCGTTTTTGACAAATAA+AGG | + | chr3_4:74689587-74689606 | None:intergenic | 25.0% |
| ! | TATTTCCTATGAGAACTTAA+CGG | + | chr3_4:74689700-74689719 | None:intergenic | 25.0% |
| !! | TCAAATCTTTGTATGGTTTT+GGG | - | chr3_4:74689790-74689809 | Msa0521720:five_prime_UTR | 25.0% |
| TATCATGTACTAGTAGTAGT+CGG | + | chr3_4:74684857-74684876 | None:intergenic | 30.0% | |
| ACACGTGATAACAATAAGAA+GGG | - | chr3_4:74684905-74684924 | Msa0521720:three_prime_UTR | 30.0% | |
| ! | GTAATGAATTTGTTTGGTTG+TGG | + | chr3_4:74684943-74684962 | None:intergenic | 30.0% |
| TTAAATAGGAACCAAAACCA+AGG | - | chr3_4:74685072-74685091 | Msa0521720:three_prime_UTR | 30.0% | |
| AGGTGAAGAAGAATAAAAAG+TGG | + | chr3_4:74685154-74685173 | None:intergenic | 30.0% | |
| CGTTAACGATCAAAATCAAA+TGG | - | chr3_4:74685212-74685231 | Msa0521720:three_prime_UTR | 30.0% | |
| TCTTAATGAGATGACGAAAT+TGG | + | chr3_4:74685411-74685430 | None:intergenic | 30.0% | |
| GATTGAATTTCAAAGCGATA+CGG | - | chr3_4:74685530-74685549 | Msa0521720:intron | 30.0% | |
| TGTGTCTGTGTTTGAAAAAT+AGG | - | chr3_4:74685728-74685747 | Msa0521720:intron | 30.0% | |
| ATAAGATTCTAACCTCAGTT+CGG | + | chr3_4:74685815-74685834 | None:intergenic | 30.0% | |
| GTCATTGAAAATGCATGTTA+AGG | - | chr3_4:74686286-74686305 | Msa0521720:CDS | 30.0% | |
| TAAGGAATGATAGATCGATA+AGG | - | chr3_4:74686304-74686323 | Msa0521720:CDS | 30.0% | |
| !! | TGACTTGTGAGTTTTACTAA+TGG | - | chr3_4:74686391-74686410 | Msa0521720:intron | 30.0% |
| CTAACATGTCATTCAATAGT+TGG | + | chr3_4:74686478-74686497 | None:intergenic | 30.0% | |
| !! | TTCTGTTCTGCATTGTTTTT+AGG | - | chr3_4:74686567-74686586 | Msa0521720:intron | 30.0% |
| ! | AAGGAGTATATTCCAATTGT+TGG | - | chr3_4:74686599-74686618 | Msa0521720:intron | 30.0% |
| ! | AGGAGTATATTCCAATTGTT+GGG | - | chr3_4:74686600-74686619 | Msa0521720:intron | 30.0% |
| !! | TTGAGTGCTAAGCTTATTTT+TGG | - | chr3_4:74686641-74686660 | Msa0521720:intron | 30.0% |
| ATAAAGGGGATAGAAAGTTA+AGG | + | chr3_4:74687000-74687019 | None:intergenic | 30.0% | |
| CTAATATTGCTGTATATCGT+TGG | - | chr3_4:74687030-74687049 | Msa0521720:intron | 30.0% | |
| ! | TCATACAAAGGTTTTCAACT+TGG | - | chr3_4:74687121-74687140 | Msa0521720:intron | 30.0% |
| ! | GTATTGATCATGATGCATAT+TGG | + | chr3_4:74687282-74687301 | None:intergenic | 30.0% |
| TTCAAGAGATTAGAAATGGT+TGG | + | chr3_4:74687616-74687635 | None:intergenic | 30.0% | |
| AAGAATATGCATTGGAGATA+TGG | + | chr3_4:74687705-74687724 | None:intergenic | 30.0% | |
| CTGTTGAACAAAAATAGATG+TGG | + | chr3_4:74687749-74687768 | None:intergenic | 30.0% | |
| !!! | CACATCTATTTTTGTTCAAC+AGG | - | chr3_4:74687747-74687766 | Msa0521720:intron | 30.0% |
| ATTGAATGGGATGAAATACA+AGG | + | chr3_4:74687977-74687996 | None:intergenic | 30.0% | |
| CATGATTCAAATCATAAGCA+GGG | + | chr3_4:74688010-74688029 | None:intergenic | 30.0% | |
| ACATGATTCAAATCATAAGC+AGG | + | chr3_4:74688011-74688030 | None:intergenic | 30.0% | |
| ! | TCAAAAACACATGTTACTTG+TGG | + | chr3_4:74688096-74688115 | None:intergenic | 30.0% |
| ! | GTAAAGCATCAAAAAGTTGT+TGG | + | chr3_4:74688425-74688444 | None:intergenic | 30.0% |
| ! | AGAATCTTTTGCAATTCCTT+TGG | - | chr3_4:74688468-74688487 | Msa0521720:intron | 30.0% |
| TGATAAAGAACTGTACAGAA+AGG | + | chr3_4:74688499-74688518 | None:intergenic | 30.0% | |
| TATTTCTCCTGCAATTGAAT+AGG | - | chr3_4:74688650-74688669 | Msa0521720:intron | 30.0% | |
| AGTCACATTATCAAGCAAAT+TGG | - | chr3_4:74688689-74688708 | Msa0521720:intron | 30.0% | |
| ATTGGAATGTTTACTTTCAC+AGG | - | chr3_4:74688707-74688726 | Msa0521720:intron | 30.0% | |
| TTGGAATGTTTACTTTCACA+GGG | - | chr3_4:74688708-74688727 | Msa0521720:intron | 30.0% | |
| ATATATACCTGACATCTGAT+GGG | - | chr3_4:74688771-74688790 | Msa0521720:intron | 30.0% | |
| AAAGTATGTACTGTTTGATG+TGG | - | chr3_4:74689189-74689208 | Msa0521720:intron | 30.0% | |
| GAAATATATATCCATGCTGT+AGG | + | chr3_4:74689325-74689344 | None:intergenic | 30.0% | |
| !!! | CATGCATTTTTTTATTGTGC+AGG | - | chr3_4:74689400-74689419 | Msa0521720:intron | 30.0% |
| CATTGAAATTTAAGCAACTC+GGG | + | chr3_4:74689496-74689515 | None:intergenic | 30.0% | |
| ACAAAAAATATCCACCATCA+CGG | + | chr3_4:74689537-74689556 | None:intergenic | 30.0% | |
| AAGAGTCTCAAATCTTTGTA+TGG | - | chr3_4:74689783-74689802 | Msa0521720:five_prime_UTR | 30.0% | |
| ! | CTCAAATCTTTGTATGGTTT+TGG | - | chr3_4:74689789-74689808 | Msa0521720:five_prime_UTR | 30.0% |
| !! | CAAATCTTTGTATGGTTTTG+GGG | - | chr3_4:74689791-74689810 | Msa0521720:five_prime_UTR | 30.0% |
| !!! | AAATCTTTGTATGGTTTTGG+GGG | - | chr3_4:74689792-74689811 | Msa0521720:five_prime_UTR | 30.0% |
| GTTTCCTCTTACAAAAGAAA+AGG | - | chr3_4:74689820-74689839 | Msa0521720:five_prime_UTR | 30.0% | |
| ! | GATACCTTTTCTTTTGTAAG+AGG | + | chr3_4:74689827-74689846 | None:intergenic | 30.0% |
| ! | AATAAGGAATGATTTTGAGC+AGG | - | chr3_4:74689862-74689881 | Msa0521720:five_prime_UTR | 30.0% |
| AATTTAAGGGTTTGACATTG+TGG | - | chr3_4:74689896-74689915 | Msa0521720:five_prime_UTR | 30.0% | |
| ATCTTATCGCATTCTTACCT+TGG | + | chr3_4:74684820-74684839 | None:intergenic | 35.0% | |
| GACACGTGATAACAATAAGA+AGG | - | chr3_4:74684904-74684923 | Msa0521720:three_prime_UTR | 35.0% | |
| CACGTGATAACAATAAGAAG+GGG | - | chr3_4:74684906-74684925 | Msa0521720:three_prime_UTR | 35.0% | |
| ATACTCTCGTGAACTTTATG+CGG | + | chr3_4:74685022-74685041 | None:intergenic | 35.0% | |
| !! | GTTGTTGATTCGAGAATAAC+CGG | + | chr3_4:74685132-74685151 | None:intergenic | 35.0% |
| AAGAAAACAAACATACACCG+AGG | + | chr3_4:74685320-74685339 | None:intergenic | 35.0% | |
| TTATGCAGTATAGGTCTGTT+TGG | + | chr3_4:74686247-74686266 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTGGTGGTGAACCT+CGG | + | chr3_4:74686805-74686824 | None:intergenic | 35.0% |
| AGGGCTATGTTCAAAAAAGT+GGG | + | chr3_4:74686867-74686886 | None:intergenic | 35.0% | |
| AAGATCAAGGCAAACAAACA+CGG | + | chr3_4:74687061-74687080 | None:intergenic | 35.0% | |
| ATAATGCGCTGAAAAGATCA+AGG | + | chr3_4:74687074-74687093 | None:intergenic | 35.0% | |
| ! | TGATAAGCACTGTCAAAGAA+AGG | + | chr3_4:74687501-74687520 | None:intergenic | 35.0% |
| TTTCTTTGACAGTGCTTATC+AGG | - | chr3_4:74687500-74687519 | Msa0521720:intron | 35.0% | |
| ! | TTTCTACCATAACTTGTGTG+TGG | - | chr3_4:74687554-74687573 | Msa0521720:CDS | 35.0% |
| TTATGTCCACACACAAGTTA+TGG | + | chr3_4:74687563-74687582 | None:intergenic | 35.0% | |
| ! | CATGGATTATCCCAAGAAAT+GGG | + | chr3_4:74687650-74687669 | None:intergenic | 35.0% |
| ! | GGTAGAAGTATATTCTTGTG+TGG | + | chr3_4:74687684-74687703 | None:intergenic | 35.0% |
| TGAAATGCTTACAATGCTCA+AGG | + | chr3_4:74687899-74687918 | None:intergenic | 35.0% | |
| ATCTGTAGTGATTAGTGATC+TGG | - | chr3_4:74687951-74687970 | Msa0521720:intron | 35.0% | |
| !! | GGGAGCATTTATTGTAGAAA+AGG | + | chr3_4:74688136-74688155 | None:intergenic | 35.0% |
| ATTGTACAAATCCCTGAAAG+AGG | + | chr3_4:74688352-74688371 | None:intergenic | 35.0% | |
| ATGGTACTCTTTAGTCAAGA+TGG | + | chr3_4:74688753-74688772 | None:intergenic | 35.0% | |
| CATCAGATGTCAGGTATATA+TGG | + | chr3_4:74688772-74688791 | None:intergenic | 35.0% | |
| CATATATACCTGACATCTGA+TGG | - | chr3_4:74688770-74688789 | Msa0521720:intron | 35.0% | |
| TTCAATTAGTTCAGACGAGT+AGG | - | chr3_4:74688818-74688837 | Msa0521720:intron | 35.0% | |
| AAAGAAATTGGACAACAGCA+TGG | + | chr3_4:74688910-74688929 | None:intergenic | 35.0% | |
| AATGCATGTCTTGAGTTATG+TGG | + | chr3_4:74689388-74689407 | None:intergenic | 35.0% | |
| !!! | GCATTTTTTTATTGTGCAGG+AGG | - | chr3_4:74689403-74689422 | Msa0521720:intron | 35.0% |
| AAAAAATATCCACCATCACG+GGG | + | chr3_4:74689535-74689554 | None:intergenic | 35.0% | |
| CAAAAAATATCCACCATCAC+GGG | + | chr3_4:74689536-74689555 | None:intergenic | 35.0% | |
| TACAAGGAAAGTTCTCTATG+GGG | + | chr3_4:74689658-74689677 | None:intergenic | 35.0% | |
| GTACAAGGAAAGTTCTCTAT+GGG | + | chr3_4:74689659-74689678 | None:intergenic | 35.0% | |
| TGTACAAGGAAAGTTCTCTA+TGG | + | chr3_4:74689660-74689679 | None:intergenic | 35.0% | |
| AGAGAGAAGAACGAAAACCA+AGG | - | chr3_4:74684800-74684819 | Msa0521720:three_prime_UTR | 40.0% | |
| ! | TTGATTCGAGAATAACCGGT+GGG | + | chr3_4:74685128-74685147 | None:intergenic | 40.0% |
| AACAAACATACACCGAGGAT+AGG | + | chr3_4:74685315-74685334 | None:intergenic | 40.0% | |
| AAGTTGAGCTTAATTGGGCT+TGG | + | chr3_4:74685777-74685796 | None:intergenic | 40.0% | |
| AAGCCCAATTAAGCTCAACT+TGG | - | chr3_4:74685776-74685795 | Msa0521720:intron | 40.0% | |
| AGCCCAATTAAGCTCAACTT+GGG | - | chr3_4:74685777-74685796 | Msa0521720:intron | 40.0% | |
| ! | CACCCAAGTTGAGCTTAATT+GGG | + | chr3_4:74685782-74685801 | None:intergenic | 40.0% |
| ! | ACACCCAAGTTGAGCTTAAT+TGG | + | chr3_4:74685783-74685802 | None:intergenic | 40.0% |
| ATTAAGCTCAACTTGGGTGT+TGG | - | chr3_4:74685783-74685802 | Msa0521720:intron | 40.0% | |
| CAAATCACATGTGTCAGTGT+TGG | - | chr3_4:74685953-74685972 | Msa0521720:CDS | 40.0% | |
| !!! | TGTTTTTAGGTCACGCAACA+AGG | - | chr3_4:74686580-74686599 | Msa0521720:intron | 40.0% |
| !!! | AGCTTATTTTTGGTGCAGAC+AGG | - | chr3_4:74686651-74686670 | Msa0521720:intron | 40.0% |
| CATAATTTATGCAAGGTCCG+AGG | - | chr3_4:74686785-74686804 | Msa0521720:intron | 40.0% | |
| AAGTGGGCAAAAGAACAGTT+AGG | + | chr3_4:74686851-74686870 | None:intergenic | 40.0% | |
| CAGGGCTATGTTCAAAAAAG+TGG | + | chr3_4:74686868-74686887 | None:intergenic | 40.0% | |
| TATACTTGCCAACACCTACT+TGG | - | chr3_4:74687093-74687112 | Msa0521720:intron | 40.0% | |
| ATACTTGCCAACACCTACTT+GGG | - | chr3_4:74687094-74687113 | Msa0521720:intron | 40.0% | |
| TTTGTATGATTGCCCCAAGT+AGG | + | chr3_4:74687110-74687129 | None:intergenic | 40.0% | |
| TACTTGGGGCAATCATACAA+AGG | - | chr3_4:74687109-74687128 | Msa0521720:intron | 40.0% | |
| ! | ACAAAGGTTTTCAACTTGGC+AGG | - | chr3_4:74687125-74687144 | Msa0521720:intron | 40.0% |
| AAGAAGTCCTGTAAGGAACA+AGG | + | chr3_4:74687346-74687365 | None:intergenic | 40.0% | |
| CAAAACAACAGATCCAGATG+GGG | + | chr3_4:74687385-74687404 | None:intergenic | 40.0% | |
| GCAAAACAACAGATCCAGAT+GGG | + | chr3_4:74687386-74687405 | None:intergenic | 40.0% | |
| AGCAAAACAACAGATCCAGA+TGG | + | chr3_4:74687387-74687406 | None:intergenic | 40.0% | |
| TTGATCCAACGCTTGAACAA+TGG | - | chr3_4:74687436-74687455 | Msa0521720:intron | 40.0% | |
| TGATCCAACGCTTGAACAAT+GGG | - | chr3_4:74687437-74687456 | Msa0521720:intron | 40.0% | |
| TCTTGAAGCTTCCCATTTCT+TGG | - | chr3_4:74687636-74687655 | Msa0521720:intron | 40.0% | |
| CTTGAAGCTTCCCATTTCTT+GGG | - | chr3_4:74687637-74687656 | Msa0521720:intron | 40.0% | |
| ! | CCATGGATTATCCCAAGAAA+TGG | + | chr3_4:74687651-74687670 | None:intergenic | 40.0% |
| CCATTTCTTGGGATAATCCA+TGG | - | chr3_4:74687648-74687667 | Msa0521720:intron | 40.0% | |
| TGTGTGGACATTATTCACCA+TGG | + | chr3_4:74687668-74687687 | None:intergenic | 40.0% | |
| TCAGCAACAAACAAACGAAC+AGG | + | chr3_4:74687808-74687827 | None:intergenic | 40.0% | |
| ! | GTTCGTTTGTTTGTTGCTGA+TGG | - | chr3_4:74687808-74687827 | Msa0521720:CDS | 40.0% |
| CATGTTCTTCGCATAACTCT+GGG | + | chr3_4:74687851-74687870 | None:intergenic | 40.0% | |
| CAGAGTTATGCGAAGAACAT+GGG | - | chr3_4:74687850-74687869 | Msa0521720:intron | 40.0% | |
| TTCTACAATAAATGCTCCCC+AGG | - | chr3_4:74688137-74688156 | Msa0521720:intron | 40.0% | |
| GCCAACTGAAACTTGTGATT+AGG | - | chr3_4:74688196-74688215 | Msa0521720:intron | 40.0% | |
| GCCTAATCACAAGTTTCAGT+TGG | + | chr3_4:74688200-74688219 | None:intergenic | 40.0% | |
| ATAGGAGGACTTGAGTACAT+GGG | + | chr3_4:74688222-74688241 | None:intergenic | 40.0% | |
| AATAGGAGGACTTGAGTACA+TGG | + | chr3_4:74688223-74688242 | None:intergenic | 40.0% | |
| TACTCAAGTCCTCCTATTCA+TGG | - | chr3_4:74688225-74688244 | Msa0521720:intron | 40.0% | |
| ACAATGGATGCACCATGAAT+AGG | + | chr3_4:74688240-74688259 | None:intergenic | 40.0% | |
| TATTCATGGTGCATCCATTG+TGG | - | chr3_4:74688239-74688258 | Msa0521720:intron | 40.0% | |
| CAATATACTTCTGCTTCCCT+TGG | - | chr3_4:74688290-74688309 | Msa0521720:intron | 40.0% | |
| !!! | ACTTGTTTTGCTCCTCTTTC+AGG | - | chr3_4:74688337-74688356 | Msa0521720:intron | 40.0% |
| !!! | CTTGTTTTGCTCCTCTTTCA+GGG | - | chr3_4:74688338-74688357 | Msa0521720:intron | 40.0% |
| TCAGGGATTTGTACAATGAC+TGG | - | chr3_4:74688355-74688374 | Msa0521720:intron | 40.0% | |
| !! | TGACTGGACTATTGAGTTGA+AGG | - | chr3_4:74688371-74688390 | Msa0521720:intron | 40.0% |
| !! | GACTATTGAGTTGAAGGCAA+TGG | - | chr3_4:74688377-74688396 | Msa0521720:intron | 40.0% |
| TTTGATGCTTTACGTGCTAG+AGG | - | chr3_4:74688432-74688451 | Msa0521720:intron | 40.0% | |
| AATCCTTGAAAGATTCTCGC+AGG | + | chr3_4:74688597-74688616 | None:intergenic | 40.0% | |
| TGGTGTACCTATTCAATTGC+AGG | + | chr3_4:74688660-74688679 | None:intergenic | 40.0% | |
| TGCAATTGAATAGGTACACC+AGG | - | chr3_4:74688659-74688678 | Msa0521720:intron | 40.0% | |
| ATAATGTGACTCCAATCACC+TGG | + | chr3_4:74688680-74688699 | None:intergenic | 40.0% | |
| GTTCCAGTTAAGTGTGAACA+TGG | - | chr3_4:74688867-74688886 | Msa0521720:intron | 40.0% | |
| AGTTGCAATGTGCAACATGT+TGG | - | chr3_4:74688948-74688967 | Msa0521720:CDS | 40.0% | |
| GTTGCAATGTGCAACATGTT+GGG | - | chr3_4:74688949-74688968 | Msa0521720:CDS | 40.0% | |
| TTGCAATGTGCAACATGTTG+GGG | - | chr3_4:74688950-74688969 | Msa0521720:CDS | 40.0% | |
| TATGAGAGATGATGCTGTCT+CGG | - | chr3_4:74689260-74689279 | Msa0521720:intron | 40.0% | |
| GTTTATCTCTACCTACAGCA+TGG | - | chr3_4:74689311-74689330 | Msa0521720:intron | 40.0% | |
| TTATCAATTCATCCCCGTGA+TGG | - | chr3_4:74689520-74689539 | Msa0521720:CDS | 40.0% | |
| ACAAGGAAAGTTCTCTATGG+GGG | + | chr3_4:74689657-74689676 | None:intergenic | 40.0% | |
| TTTCCTTGTACATCTGTTGC+AGG | - | chr3_4:74689668-74689687 | Msa0521720:five_prime_UTR | 40.0% | |
| TTCCTTGTACATCTGTTGCA+GGG | - | chr3_4:74689669-74689688 | Msa0521720:five_prime_UTR | 40.0% | |
| AGAAAAAACGACTCTGTCGT+AGG | - | chr3_4:74689727-74689746 | Msa0521720:five_prime_UTR | 40.0% | |
| ATGTACTAGTAGTAGTCGGC+GGG | + | chr3_4:74684853-74684872 | None:intergenic | 45.0% | |
| CATGTACTAGTAGTAGTCGG+CGG | + | chr3_4:74684854-74684873 | None:intergenic | 45.0% | |
| !! | GTTGATTCGAGAATAACCGG+TGG | + | chr3_4:74685129-74685148 | None:intergenic | 45.0% |
| ATTCTTCTTCACCTGATCGC+AGG | - | chr3_4:74685160-74685179 | Msa0521720:three_prime_UTR | 45.0% | |
| ATAGTGTTTAGCCTGCGATC+AGG | + | chr3_4:74685174-74685193 | None:intergenic | 45.0% | |
| GAAGACGGAATCAGAAGAAG+CGG | + | chr3_4:74685265-74685284 | None:intergenic | 45.0% | |
| ! | GGTAACTGTCGCTTACAACA+AGG | - | chr3_4:74685749-74685768 | Msa0521720:intron | 45.0% |
| AATGGCCTGTGATACTTACC+AGG | - | chr3_4:74686409-74686428 | Msa0521720:intron | 45.0% | |
| ACCTTCCTGGTAAGTATCAC+AGG | + | chr3_4:74686417-74686436 | None:intergenic | 45.0% | |
| CTCACAACATCCAACACAAG+GGG | + | chr3_4:74686443-74686462 | None:intergenic | 45.0% | |
| CCTCACAACATCCAACACAA+GGG | + | chr3_4:74686444-74686463 | None:intergenic | 45.0% | |
| AAATCAGCGAGCCCAACAAT+TGG | + | chr3_4:74686614-74686633 | None:intergenic | 45.0% | |
| ATAACTGAGCTAAGCTCACG+GGG | + | chr3_4:74686764-74686783 | None:intergenic | 45.0% | |
| CATAACTGAGCTAAGCTCAC+GGG | + | chr3_4:74686765-74686784 | None:intergenic | 45.0% | |
| GCATAACTGAGCTAAGCTCA+CGG | + | chr3_4:74686766-74686785 | None:intergenic | 45.0% | |
| CCCTGTTCTCTTGAATAGCA+GGG | + | chr3_4:74686886-74686905 | None:intergenic | 45.0% | |
| CCCTGCTATTCAAGAGAACA+GGG | - | chr3_4:74686883-74686902 | Msa0521720:CDS | 45.0% | |
| ACCCTGTTCTCTTGAATAGC+AGG | + | chr3_4:74686887-74686906 | None:intergenic | 45.0% | |
| AACAGGGTTACCACTGTTCA+AGG | - | chr3_4:74686899-74686918 | Msa0521720:CDS | 45.0% | |
| ACCACTGTTCAAGGCTTATC+TGG | - | chr3_4:74686908-74686927 | Msa0521720:CDS | 45.0% | |
| ACCAGATAAGCCTTGAACAG+TGG | + | chr3_4:74686912-74686931 | None:intergenic | 45.0% | |
| GTTCAAGGCTTATCTGGTAC+TGG | - | chr3_4:74686914-74686933 | Msa0521720:CDS | 45.0% | |
| !! | GTACTGGTTCGCTAAGAGTT+GGG | - | chr3_4:74686930-74686949 | Msa0521720:CDS | 45.0% |
| !! | TACTGGTTCGCTAAGAGTTG+GGG | - | chr3_4:74686931-74686950 | Msa0521720:CDS | 45.0% |
| TACTTGCCAACACCTACTTG+GGG | - | chr3_4:74687095-74687114 | Msa0521720:intron | 45.0% | |
| AGTCCTGTAAGGAACAAGGA+GGG | + | chr3_4:74687342-74687361 | None:intergenic | 45.0% | |
| AAGTCCTGTAAGGAACAAGG+AGG | + | chr3_4:74687343-74687362 | None:intergenic | 45.0% | |
| GTTCCTTACAGGACTTCTTG+AGG | - | chr3_4:74687347-74687366 | Msa0521720:CDS | 45.0% | |
| GATCCTCAAGAAGTCCTGTA+AGG | + | chr3_4:74687353-74687372 | None:intergenic | 45.0% | |
| ACAGGACTTCTTGAGGATCT+TGG | - | chr3_4:74687354-74687373 | Msa0521720:CDS | 45.0% | |
| ATCTGCATCTAGACTTCCAC+TGG | + | chr3_4:74687779-74687798 | None:intergenic | 45.0% | |
| ! | CGTTTGTTTGTTGCTGATGG+TGG | - | chr3_4:74687811-74687830 | Msa0521720:CDS | 45.0% |
| CCATGTTCTTCGCATAACTC+TGG | + | chr3_4:74687852-74687871 | None:intergenic | 45.0% | |
| CCAGAGTTATGCGAAGAACA+TGG | - | chr3_4:74687849-74687868 | Msa0521720:intron | 45.0% | |
| GCGAAGAACATGGGTCTTTA+TGG | - | chr3_4:74687859-74687878 | Msa0521720:intron | 45.0% | |
| GGTCTTTATGGTGAACGTGT+TGG | - | chr3_4:74687871-74687890 | Msa0521720:intron | 45.0% | |
| ATGGATGCACCATGAATAGG+AGG | + | chr3_4:74688237-74688256 | None:intergenic | 45.0% | |
| TCACTACCTGTCCTTGAGAA+TGG | + | chr3_4:74688268-74688287 | None:intergenic | 45.0% | |
| ATATGTCCAAGTCCAGCCAA+GGG | + | chr3_4:74688309-74688328 | None:intergenic | 45.0% | |
| ATGCTTTACGTGCTAGAGGT+TGG | - | chr3_4:74688436-74688455 | Msa0521720:intron | 45.0% | |
| GTACAGAAAGGACAAGCCAA+AGG | + | chr3_4:74688487-74688506 | None:intergenic | 45.0% | |
| TCTCCTGCGAGAATCTTTCA+AGG | - | chr3_4:74688591-74688610 | Msa0521720:intron | 45.0% | |
| GAATAGGTACACCAGGTGAT+TGG | - | chr3_4:74688666-74688685 | Msa0521720:intron | 45.0% | |
| ! | GTCAAGATGGAAACTTGCTC+AGG | + | chr3_4:74688740-74688759 | None:intergenic | 45.0% |
| TGTCTTACCCATCAGATGTC+AGG | + | chr3_4:74688781-74688800 | None:intergenic | 45.0% | |
| GCACCATGTTCACACTTAAC+TGG | + | chr3_4:74688873-74688892 | None:intergenic | 45.0% | |
| TGCAATGTGCAACATGTTGG+GGG | - | chr3_4:74688951-74688970 | Msa0521720:CDS | 45.0% | |
| ! | ATTGTGCAGGAGGATTAGCA+TGG | - | chr3_4:74689413-74689432 | Msa0521720:intron | 45.0% |
| GTATTGCATCAGCCAGATGT+GGG | + | chr3_4:74689461-74689480 | None:intergenic | 45.0% | |
| TGTATTGCATCAGCCAGATG+TGG | + | chr3_4:74689462-74689481 | None:intergenic | 45.0% | |
| CAAGGAAAGTTCTCTATGGG+GGG | + | chr3_4:74689656-74689675 | None:intergenic | 45.0% | |
| TCCTTGTACATCTGTTGCAG+GGG | - | chr3_4:74689670-74689689 | Msa0521720:five_prime_UTR | 45.0% | |
| GAGAGCCGTTAAGTTCTCAT+AGG | - | chr3_4:74689692-74689711 | Msa0521720:five_prime_UTR | 45.0% | |
| AACGACTCTGTCGTAGGATT+TGG | - | chr3_4:74689733-74689752 | Msa0521720:five_prime_UTR | 45.0% | |
| !!! | TAAGAATTTTTTTTTTTTTT+TGG | + | chr3_4:74686818-74686837 | None:intergenic | 5.0% |
| !! | ATTAGTTAAAAAAATATAAA+GGG | + | chr3_4:74687015-74687034 | None:intergenic | 5.0% |
| !! | TATTAGTTAAAAAAATATAA+AGG | + | chr3_4:74687016-74687035 | None:intergenic | 5.0% |
| TATATACAGCATGCGCCCAC+CGG | - | chr3_4:74685110-74685129 | Msa0521720:three_prime_UTR | 50.0% | |
| TCAGAAGAAGCGGTTGGAGA+AGG | + | chr3_4:74685255-74685274 | None:intergenic | 50.0% | |
| ACGGAATCAGAAGAAGCGGT+TGG | + | chr3_4:74685261-74685280 | None:intergenic | 50.0% | |
| ACGAACGAGATGAGCGAAGA+CGG | + | chr3_4:74685280-74685299 | None:intergenic | 50.0% | |
| GCTCCTGAAGATCCTATCCT+CGG | - | chr3_4:74685300-74685319 | Msa0521720:intron | 50.0% | |
| ACACCGAGGATAGGATCTTC+AGG | + | chr3_4:74685306-74685325 | None:intergenic | 50.0% | |
| ! | CGATACGGTTCTGATGCTGA+TGG | - | chr3_4:74685545-74685564 | Msa0521720:intron | 50.0% |
| ! | TGTTGGTGCTTACCGAACTG+AGG | - | chr3_4:74685800-74685819 | Msa0521720:intron | 50.0% |
| GCCTGTGATACTTACCAGGA+AGG | - | chr3_4:74686413-74686432 | Msa0521720:intron | 50.0% | |
| ACACAAGGGGTTTACCTTCC+TGG | + | chr3_4:74686430-74686449 | None:intergenic | 50.0% | |
| GGAAGGTAAACCCCTTGTGT+TGG | - | chr3_4:74686430-74686449 | Msa0521720:intron | 50.0% | |
| CCCTTGTGTTGGATGTTGTG+AGG | - | chr3_4:74686441-74686460 | Msa0521720:intron | 50.0% | |
| GCCTCACAACATCCAACACA+AGG | + | chr3_4:74686445-74686464 | None:intergenic | 50.0% | |
| GCCCTGCTATTCAAGAGAAC+AGG | - | chr3_4:74686882-74686901 | Msa0521720:CDS | 50.0% | |
| !! | GGTACTGGTTCGCTAAGAGT+TGG | - | chr3_4:74686929-74686948 | Msa0521720:CDS | 50.0% |
| !! | ACTGGTTCGCTAAGAGTTGG+GGG | - | chr3_4:74686932-74686951 | Msa0521720:CDS | 50.0% |
| TGATTGCCCCAAGTAGGTGT+TGG | + | chr3_4:74687104-74687123 | None:intergenic | 50.0% | |
| TACTATGCTCCAGCAACACG+AGG | - | chr3_4:74687170-74687189 | Msa0521720:intron | 50.0% | |
| ACTATGCTCCAGCAACACGA+GGG | - | chr3_4:74687171-74687190 | Msa0521720:intron | 50.0% | |
| ACACGAGGGCTTGACTTTCA+AGG | - | chr3_4:74687185-74687204 | Msa0521720:intron | 50.0% | |
| TCCTGTAAGGAACAAGGAGG+GGG | + | chr3_4:74687340-74687359 | None:intergenic | 50.0% | |
| GTCCTGTAAGGAACAAGGAG+GGG | + | chr3_4:74687341-74687360 | None:intergenic | 50.0% | |
| GCATGTGCACATAACCCTAC+TGG | - | chr3_4:74687411-74687430 | Msa0521720:intron | 50.0% | |
| GCGTTGGATCAACACCAGTA+GGG | + | chr3_4:74687428-74687447 | None:intergenic | 50.0% | |
| ! | AGCGTTGGATCAACACCAGT+AGG | + | chr3_4:74687429-74687448 | None:intergenic | 50.0% |
| TGCTCCCATTGTTCAAGCGT+TGG | + | chr3_4:74687444-74687463 | None:intergenic | 50.0% | |
| ! | GTTCAACAGGGTTTTGCCAG+TGG | - | chr3_4:74687760-74687779 | Msa0521720:CDS | 50.0% |
| !! | TGCTGATGGTGGAGAATTGC+TGG | - | chr3_4:74687822-74687841 | Msa0521720:CDS | 50.0% |
| AGTCAGCGGATGTTTCAAGC+AGG | - | chr3_4:74688166-74688185 | Msa0521720:intron | 50.0% | |
| GTCAGCGGATGTTTCAAGCA+GGG | - | chr3_4:74688167-74688186 | Msa0521720:intron | 50.0% | |
| CTACCTGTCCTTGAGAATGG+CGG | + | chr3_4:74688265-74688284 | None:intergenic | 50.0% | |
| ATACTTCTGCTTCCCTTGGC+TGG | - | chr3_4:74688294-74688313 | Msa0521720:intron | 50.0% | |
| CATATGTCCAAGTCCAGCCA+AGG | + | chr3_4:74688310-74688329 | None:intergenic | 50.0% | |
| CAGCATGGTACGCAAGCTAT+AGG | + | chr3_4:74688895-74688914 | None:intergenic | 50.0% | |
| CTCCAAAACAGTCCCACATC+TGG | - | chr3_4:74689446-74689465 | Msa0521720:CDS | 50.0% | |
| ! | AGCCAGATGTGGGACTGTTT+TGG | + | chr3_4:74689451-74689470 | None:intergenic | 50.0% |
| TCAATTCATCCCCGTGATGG+TGG | - | chr3_4:74689523-74689542 | Msa0521720:CDS | 50.0% | |
| GAAAGTTCTCTATGGGGGGA+AGG | + | chr3_4:74689652-74689671 | None:intergenic | 50.0% | |
| TCCCCTGCAACAGATGTACA+AGG | + | chr3_4:74689674-74689693 | None:intergenic | 50.0% | |
| AAGTCAAGCCCTCGTGTTGC+TGG | + | chr3_4:74687182-74687201 | None:intergenic | 55.0% | |
| TCCCCCTCCTTGTTCCTTAC+AGG | - | chr3_4:74687336-74687355 | Msa0521720:CDS | 55.0% | |
| !! | GATCTTGGTTCTGCCCCATC+TGG | - | chr3_4:74687369-74687388 | Msa0521720:intron | 55.0% |
| !! | ATCCGCTGACTTGCTGACCT+GGG | + | chr3_4:74688157-74688176 | None:intergenic | 55.0% |
| CTTGAGAATGGCGGCCACAA+TGG | + | chr3_4:74688256-74688275 | None:intergenic | 55.0% | |
| CATTGTGGCCGCCATTCTCA+AGG | - | chr3_4:74688254-74688273 | Msa0521720:CDS | 55.0% | |
| ! | TGCAGGAGGATTAGCATGGC+TGG | - | chr3_4:74689417-74689436 | Msa0521720:CDS | 55.0% |
| TCCCCAGGTCAGCAAGTCAG+CGG | - | chr3_4:74688152-74688171 | Msa0521720:intron | 60.0% | |
| !! | TCCGCTGACTTGCTGACCTG+GGG | + | chr3_4:74688156-74688175 | None:intergenic | 60.0% |
| !! | CATCCGCTGACTTGCTGACC+TGG | + | chr3_4:74688158-74688177 | None:intergenic | 60.0% |
| TGGCCGCCATTCTCAAGGAC+AGG | - | chr3_4:74688259-74688278 | Msa0521720:CDS | 60.0% | |
| CTGCTTCCCTTGGCTGGACT+TGG | - | chr3_4:74688300-74688319 | Msa0521720:intron | 60.0% | |
| !! | CTCTATGGGGGGAAGGCATC+AGG | + | chr3_4:74689645-74689664 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 74684795 | 74689944 | 74684795 | ID=Msa0521720;Name=Msa0521720 |
| chr3_4 | mRNA | 74684795 | 74689944 | 74684795 | ID=Msa0521720-mRNA-1;Parent=Msa0521720;Name=Msa0521720-mRNA-1;_AED=0.08;_eAED=0.08;_QI=325|1|1|1|1|1|12|438|455 |
| chr3_4 | exon | 74684795 | 74685317 | 74684795 | ID=Msa0521720-mRNA-1:exon:21260;Parent=Msa0521720-mRNA-1 |
| chr3_4 | exon | 74685947 | 74686067 | 74685947 | ID=Msa0521720-mRNA-1:exon:21259;Parent=Msa0521720-mRNA-1 |
| chr3_4 | exon | 74686286 | 74686380 | 74686286 | ID=Msa0521720-mRNA-1:exon:21258;Parent=Msa0521720-mRNA-1 |
| chr3_4 | exon | 74686459 | 74686580 | 74686459 | ID=Msa0521720-mRNA-1:exon:21257;Parent=Msa0521720-mRNA-1 |
| chr3_4 | exon | 74686833 | 74686970 | 74686833 | ID=Msa0521720-mRNA-1:exon:21256;Parent=Msa0521720-mRNA-1 |
| chr3_4 | exon | 74687218 | 74687381 | 74687218 | ID=Msa0521720-mRNA-1:exon:21255;Parent=Msa0521720-mRNA-1 |
| chr3_4 | exon | 74687533 | 74687653 | 74687533 | ID=Msa0521720-mRNA-1:exon:21254;Parent=Msa0521720-mRNA-1 |
| chr3_4 | exon | 74687757 | 74687856 | 74687757 | ID=Msa0521720-mRNA-1:exon:21253;Parent=Msa0521720-mRNA-1 |
| chr3_4 | exon | 74688067 | 74688150 | 74688067 | ID=Msa0521720-mRNA-1:exon:21252;Parent=Msa0521720-mRNA-1 |
| chr3_4 | exon | 74688247 | 74688308 | 74688247 | ID=Msa0521720-mRNA-1:exon:21251;Parent=Msa0521720-mRNA-1 |
| chr3_4 | exon | 74688918 | 74688989 | 74688918 | ID=Msa0521720-mRNA-1:exon:21250;Parent=Msa0521720-mRNA-1 |
| chr3_4 | exon | 74689416 | 74689944 | 74689416 | ID=Msa0521720-mRNA-1:exon:21249;Parent=Msa0521720-mRNA-1 |
| chr3_4 | five_prime_UTR | 74689620 | 74689944 | 74689620 | ID=Msa0521720-mRNA-1:five_prime_utr;Parent=Msa0521720-mRNA-1 |
| chr3_4 | CDS | 74689416 | 74689619 | 74689416 | ID=Msa0521720-mRNA-1:cds;Parent=Msa0521720-mRNA-1 |
| chr3_4 | CDS | 74688918 | 74688989 | 74688918 | ID=Msa0521720-mRNA-1:cds;Parent=Msa0521720-mRNA-1 |
| chr3_4 | CDS | 74688247 | 74688308 | 74688247 | ID=Msa0521720-mRNA-1:cds;Parent=Msa0521720-mRNA-1 |
| chr3_4 | CDS | 74688067 | 74688150 | 74688067 | ID=Msa0521720-mRNA-1:cds;Parent=Msa0521720-mRNA-1 |
| chr3_4 | CDS | 74687757 | 74687856 | 74687757 | ID=Msa0521720-mRNA-1:cds;Parent=Msa0521720-mRNA-1 |
| chr3_4 | CDS | 74687533 | 74687653 | 74687533 | ID=Msa0521720-mRNA-1:cds;Parent=Msa0521720-mRNA-1 |
| chr3_4 | CDS | 74687218 | 74687381 | 74687218 | ID=Msa0521720-mRNA-1:cds;Parent=Msa0521720-mRNA-1 |
| chr3_4 | CDS | 74686833 | 74686970 | 74686833 | ID=Msa0521720-mRNA-1:cds;Parent=Msa0521720-mRNA-1 |
| chr3_4 | CDS | 74686459 | 74686580 | 74686459 | ID=Msa0521720-mRNA-1:cds;Parent=Msa0521720-mRNA-1 |
| chr3_4 | CDS | 74686286 | 74686380 | 74686286 | ID=Msa0521720-mRNA-1:cds;Parent=Msa0521720-mRNA-1 |
| chr3_4 | CDS | 74685947 | 74686067 | 74685947 | ID=Msa0521720-mRNA-1:cds;Parent=Msa0521720-mRNA-1 |
| chr3_4 | CDS | 74685233 | 74685317 | 74685233 | ID=Msa0521720-mRNA-1:cds;Parent=Msa0521720-mRNA-1 |
| chr3_4 | three_prime_UTR | 74684795 | 74685232 | 74684795 | ID=Msa0521720-mRNA-1:three_prime_utr;Parent=Msa0521720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
