AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0440670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0440670 MtrunA17_Chr3g0081941 75.000 40 10 0 38 77 1232 1271 2.07e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 12 sgRNAs with CRISPR-Local

Find 486 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCGGTAACTTCTTTGTTTC+CGG 0.205095 3_3:-8178398 None:intergenic
TTTGTTTCCGGATCTATATT+CGG 0.231493 3_3:-8178386 None:intergenic
GCTTTCTTATAGTAGTATTA+AGG 0.320427 3_3:-8185854 None:intergenic
CTTTCTCTCATGTAATCTTA+AGG 0.341962 3_3:+8185769 Msa0440670:CDS
TTTCTCTCATGTAATCTTAA+GGG 0.385240 3_3:+8185770 Msa0440670:CDS
TTGTTTCCGGATCTATATTC+GGG 0.425035 3_3:-8178385 None:intergenic
AGAATATATTTGAATCAGAA+TGG 0.492083 3_3:+8185807 Msa0440670:CDS
GCAATACCCGAATATAGATC+CGG 0.554479 3_3:+8178379 Msa0440670:CDS
TGAATCAGAATGGAGATCAA+TGG 0.558047 3_3:+8185817 Msa0440670:CDS
TAAGATTTCGACGGTAGCGA+CGG 0.565247 3_3:-8178419 None:intergenic
GATTTCGACGGTAGCGACGG+CGG 0.632756 3_3:-8178416 None:intergenic
AAGAGAAACTAAGATTTCGA+CGG 0.643075 3_3:-8178428 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTAAACAAAATTGTAA+CGG + chr3_3:8178461-8178480 Msa0440670:intron 10.0%
!!! TAACATTTATAGTTATATTT+TGG + chr3_3:8178559-8178578 Msa0440670:intron 10.0%
!!! AACATTTATAGTTATATTTT+GGG + chr3_3:8178560-8178579 Msa0440670:intron 10.0%
!!! ATTTAATTTATATGTAGAAT+TGG + chr3_3:8178591-8178610 Msa0440670:intron 10.0%
!! AAATTGATATTGTTATATAT+TGG + chr3_3:8178845-8178864 Msa0440670:intron 10.0%
!! AATTGATATTGTTATATATT+GGG + chr3_3:8178846-8178865 Msa0440670:intron 10.0%
!!! TATATTTTATTTGTCATTTA+TGG + chr3_3:8178905-8178924 Msa0440670:intron 10.0%
!!! ATATTTTATTTGTCATTTAT+GGG + chr3_3:8178906-8178925 Msa0440670:intron 10.0%
!! ATGAAATATTATATTCATTA+GGG - chr3_3:8181261-8181280 None:intergenic 10.0%
!!! CAACTTGATAATATTAATTT+TGG + chr3_3:8178731-8178750 Msa0440670:intron 15.0%
!! ATAATTGATAAGATAAGAAT+AGG + chr3_3:8178805-8178824 Msa0440670:intron 15.0%
!! ATTGATATTGTTATATATTG+GGG + chr3_3:8178847-8178866 Msa0440670:intron 15.0%
!! ACTAACTTTCAATATTATTA+AGG + chr3_3:8179041-8179060 Msa0440670:intron 15.0%
!! CTAACTTTCAATATTATTAA+GGG + chr3_3:8179042-8179061 Msa0440670:intron 15.0%
!!! ACTTCTTTTAAATCATAAAA+TGG - chr3_3:8180883-8180902 None:intergenic 15.0%
!! CATGAAATATTATATTCATT+AGG - chr3_3:8181262-8181281 None:intergenic 15.0%
!!! TTTTATAGATTTAAATCCAT+AGG + chr3_3:8181368-8181387 Msa0440670:intron 15.0%
!! ATGAAAATAATGATATAAGA+AGG - chr3_3:8181737-8181756 None:intergenic 15.0%
!!! TCTTATATCATTATTTTCAT+AGG + chr3_3:8181737-8181756 Msa0440670:intron 15.0%
!! TAACTACAATTAAAATGATA+GGG - chr3_3:8184434-8184453 None:intergenic 15.0%
!!! TGTCCTTATTTTTTTAAATT+TGG + chr3_3:8185701-8185720 Msa0440670:intron 15.0%
!! AAACTAGCTATATTAATAGT+AGG + chr3_3:8178236-8178255 Msa0440670:intron 20.0%
!! ATTTCATATGATAACCTAAT+AGG + chr3_3:8178354-8178373 Msa0440670:intron 20.0%
!!! TAAAACATATAAAAAGTGCA+GGG - chr3_3:8178529-8178548 None:intergenic 20.0%
!!! ATAAAACATATAAAAAGTGC+AGG - chr3_3:8178530-8178549 None:intergenic 20.0%
!!! TATAGTTATATTTTGGGATT+TGG + chr3_3:8178566-8178585 Msa0440670:intron 20.0%
!!! ATAGTTATATTTTGGGATTT+GGG + chr3_3:8178567-8178586 Msa0440670:intron 20.0%
!!! TAGAAGTAATAAAGTGATTT+TGG + chr3_3:8178648-8178667 Msa0440670:intron 20.0%
!!! AGAAGTAATAAAGTGATTTT+GGG + chr3_3:8178649-8178668 Msa0440670:intron 20.0%
!!! ATCAATCTAACATATTTTCA+TGG - chr3_3:8179156-8179175 None:intergenic 20.0%
!!! AGTTGTAATTTTTAGATTTC+TGG + chr3_3:8179261-8179280 Msa0440670:intron 20.0%
!! ATGTAAATGATGATTTATGT+TGG + chr3_3:8180533-8180552 Msa0440670:intron 20.0%
!!! TTTTATGATGTTGAATTTGA+AGG + chr3_3:8180843-8180862 Msa0440670:intron 20.0%
!!! TTATGATGAAATTTTCAAGT+TGG + chr3_3:8180938-8180957 Msa0440670:intron 20.0%
!!! TATGATGAAATTTTCAAGTT+GGG + chr3_3:8180939-8180958 Msa0440670:intron 20.0%
!!! ACAATGTTGGTTAATTAAAA+CGG + chr3_3:8180975-8180994 Msa0440670:intron 20.0%
!! TATTATATTCATTAGGGTTT+AGG - chr3_3:8181255-8181274 None:intergenic 20.0%
!! AAATTATGAAATAGTACCTA+TGG - chr3_3:8181387-8181406 None:intergenic 20.0%
!! TATGATTAACCTTATTAGAA+AGG + chr3_3:8181615-8181634 Msa0440670:intron 20.0%
!! AAGAATATTCCTTTCTAATA+AGG - chr3_3:8181627-8181646 None:intergenic 20.0%
!! TTTACTATATAACTGATGTA+AGG + chr3_3:8181677-8181696 Msa0440670:intron 20.0%
!! TTACTATATAACTGATGTAA+GGG + chr3_3:8181678-8181697 Msa0440670:intron 20.0%
!!! TATATCATTATTTTCATAGG+AGG + chr3_3:8181740-8181759 Msa0440670:intron 20.0%
!! AATCTGTTAAAACAACAATA+TGG - chr3_3:8182149-8182168 None:intergenic 20.0%
!! TCATACTGTGAATTAAAAAA+TGG + chr3_3:8182230-8182249 Msa0440670:intron 20.0%
!!! CATTTGAAGTAAGAATAAAA+AGG - chr3_3:8182330-8182349 None:intergenic 20.0%
!! TTAATATATGTACTTGTATG+TGG + chr3_3:8182369-8182388 Msa0440670:intron 20.0%
!! ACATCTCATATGTATATTTA+AGG + chr3_3:8182443-8182462 Msa0440670:intron 20.0%
!!! TTGTTTGATGATATTAACAT+TGG - chr3_3:8182475-8182494 None:intergenic 20.0%
!!! CTTTATAGTTTCTTTTGATT+TGG - chr3_3:8183266-8183285 None:intergenic 20.0%
!! TACTATTAGTGAGAATAATT+GGG - chr3_3:8183458-8183477 None:intergenic 20.0%
!! AATTATTCTCACTAATAGTA+GGG + chr3_3:8183458-8183477 Msa0440670:intron 20.0%
!! TTCAATCATTATAACTTCAT+TGG - chr3_3:8183688-8183707 None:intergenic 20.0%
!!! AACTGTTTTTTAGCAAATTT+AGG + chr3_3:8183871-8183890 Msa0440670:intron 20.0%
!! AAGAAAAGGAAAATAAATGA+AGG - chr3_3:8184390-8184409 None:intergenic 20.0%
!! GTAAGATTTATCTAAAGAAA+AGG - chr3_3:8184404-8184423 None:intergenic 20.0%
!! AACTACAATTAAAATGATAG+GGG - chr3_3:8184433-8184452 None:intergenic 20.0%
!! GTAACTACAATTAAAATGAT+AGG - chr3_3:8184435-8184454 None:intergenic 20.0%
!!! CATTTTAATTGTAGTTACTA+AGG + chr3_3:8184437-8184456 Msa0440670:intron 20.0%
!! ACAAAATATTCTATTCTATC+AGG - chr3_3:8184468-8184487 None:intergenic 20.0%
!!! TAAAAGTGACATCATTTTTT+AGG - chr3_3:8185208-8185227 None:intergenic 20.0%
!! AGAATATATTTGAATCAGAA+TGG + chr3_3:8185807-8185826 Msa0440670:CDS 20.0%
!!! GTCCTTAAGTTTTTTAAATT+TGG + chr3_3:8185912-8185931 Msa0440670:CDS 20.0%
!! TGCCAAATTTAAAAAACTTA+AGG - chr3_3:8185917-8185936 None:intergenic 20.0%
! AGTCAAAAATCTATGAATTC+AGG + chr3_3:8178497-8178516 Msa0440670:intron 25.0%
!! GAAGTAATAAAGTGATTTTG+GGG + chr3_3:8178650-8178669 Msa0440670:intron 25.0%
! CGAACTATCATTATTTGTTT+AGG + chr3_3:8178761-8178780 Msa0440670:intron 25.0%
! AAAATATACGAACACAAATC+AGG - chr3_3:8178893-8178912 None:intergenic 25.0%
! AGAATGAATTTAGCATGATT+AGG + chr3_3:8179076-8179095 Msa0440670:intron 25.0%
! TAGCATCTAATTATCATCTT+AGG - chr3_3:8179209-8179228 None:intergenic 25.0%
! GATGATAATTAGATGCTATT+TGG + chr3_3:8179211-8179230 Msa0440670:intron 25.0%
! AACTCTCTTTCTTACTTATA+AGG - chr3_3:8179570-8179589 None:intergenic 25.0%
! ACTTATACAACTCATAATCA+TGG - chr3_3:8179723-8179742 None:intergenic 25.0%
! CAACATAAATGAGCATAATT+AGG - chr3_3:8180008-8180027 None:intergenic 25.0%
! ATTATGCTCATTTATGTTGT+TGG + chr3_3:8180009-8180028 Msa0440670:intron 25.0%
! GATGTCTTATGATGATTATT+AGG + chr3_3:8180203-8180222 Msa0440670:intron 25.0%
! ATAATCAAACATCATCATCA+GGG - chr3_3:8180263-8180282 None:intergenic 25.0%
! AGTTCAACATTTAAAAGTCT+TGG - chr3_3:8180798-8180817 None:intergenic 25.0%
!!! AAATTTTCAAGTTGGGAAAA+TGG + chr3_3:8180946-8180965 Msa0440670:intron 25.0%
!!! AATTTTCAAGTTGGGAAAAT+GGG + chr3_3:8180947-8180966 Msa0440670:intron 25.0%
! GTTAATTAAAACGGAATTGA+GGG + chr3_3:8180984-8181003 Msa0440670:intron 25.0%
! TTAATTAAAACGGAATTGAG+GGG + chr3_3:8180985-8181004 Msa0440670:intron 25.0%
!!! GCACAAACTTAAGTTTTATA+TGG + chr3_3:8181897-8181916 Msa0440670:intron 25.0%
!!! ACTTAAGTTTTATATGGATG+TGG + chr3_3:8181903-8181922 Msa0440670:intron 25.0%
!!! TAAGAAGTTTTATATGGATG+TGG + chr3_3:8181937-8181956 Msa0440670:intron 25.0%
! TGTGAATTAAAAAATGGTCT+TGG + chr3_3:8182236-8182255 Msa0440670:intron 25.0%
! GTGAATTAAAAAATGGTCTT+GGG + chr3_3:8182237-8182256 Msa0440670:intron 25.0%
! ATAAAAAGGCCTTTAACATT+GGG - chr3_3:8182316-8182335 None:intergenic 25.0%
! AATAAAAAGGCCTTTAACAT+TGG - chr3_3:8182317-8182336 None:intergenic 25.0%
! TTATTCTTACTTCAAATGAC+AGG + chr3_3:8182332-8182351 Msa0440670:intron 25.0%
! TCAACACAACATAATTTAGA+AGG + chr3_3:8182548-8182567 Msa0440670:intron 25.0%
!!! AATTTAGAAGGTATTCCATT+TGG + chr3_3:8182560-8182579 Msa0440670:intron 25.0%
!!! ATTTAGAAGGTATTCCATTT+GGG + chr3_3:8182561-8182580 Msa0440670:intron 25.0%
!!! CAGAATTTTATTTACCCAAA+TGG - chr3_3:8182578-8182597 None:intergenic 25.0%
!! TACTGGTTAGTGTTAATTAA+TGG - chr3_3:8182728-8182747 None:intergenic 25.0%
! TACTAATTTCCAAAATGTTC+CGG - chr3_3:8182933-8182952 None:intergenic 25.0%
! CTACTATTAGTGAGAATAAT+TGG - chr3_3:8183459-8183478 None:intergenic 25.0%
! CAATTATTCTCACTAATAGT+AGG + chr3_3:8183457-8183476 Msa0440670:intron 25.0%
! TTCTTCAAAGGATAATTACA+AGG - chr3_3:8183515-8183534 None:intergenic 25.0%
!! TCCTTGAATTTTCTAATAGA+AGG + chr3_3:8183601-8183620 Msa0440670:intron 25.0%
!! CCTTGAATTTTCTAATAGAA+GGG + chr3_3:8183602-8183621 Msa0440670:intron 25.0%
! TGTATTGCAGATGATTATAA+AGG - chr3_3:8183646-8183665 None:intergenic 25.0%
! TATAATCATCTGCAATACAT+AGG + chr3_3:8183647-8183666 Msa0440670:intron 25.0%
! AAGTTATAATGATTGAACCA+AGG + chr3_3:8183691-8183710 Msa0440670:intron 25.0%
! CTCTATATATTGCAATTGTT+AGG - chr3_3:8184117-8184136 None:intergenic 25.0%
! ATTGTTAAAAAACGCTACTT+TGG - chr3_3:8184143-8184162 None:intergenic 25.0%
! TCTATTTACATGAATGAGAA+AGG + chr3_3:8184573-8184592 Msa0440670:intron 25.0%
! AGCAATTCTATTATCTTACA+TGG + chr3_3:8184598-8184617 Msa0440670:intron 25.0%
!!! TTATTTTGAAGTGTTTTGCA+AGG + chr3_3:8184642-8184661 Msa0440670:intron 25.0%
! TGGATAAGTTAAATATCTTG+CGG - chr3_3:8185026-8185045 None:intergenic 25.0%
!!! AGTTTTGGATTTTTAGGTAT+GGG - chr3_3:8185075-8185094 None:intergenic 25.0%
!!! TAGTTTTGGATTTTTAGGTA+TGG - chr3_3:8185076-8185095 None:intergenic 25.0%
!!! AAGGTTAGTTTTGGATTTTT+AGG - chr3_3:8185081-8185100 None:intergenic 25.0%
! ATCAAATTCATATTGCATTG+CGG - chr3_3:8185124-8185143 None:intergenic 25.0%
! CTCTTATTAGAAATAAGATG+TGG + chr3_3:8185145-8185164 Msa0440670:intron 25.0%
!!! TGACATCATTTTTTAGGTAT+GGG - chr3_3:8185202-8185221 None:intergenic 25.0%
! TGTAGAGGAAATTATTGAAA+AGG + chr3_3:8185636-8185655 Msa0440670:intron 25.0%
! GGGCCAAATTTAAAAAAATA+AGG - chr3_3:8185707-8185726 None:intergenic 25.0%
!!! ATTCTAAAGGTATCTAAGTT+GGG - chr3_3:8185727-8185746 None:intergenic 25.0%
!!! AATTCTAAAGGTATCTAAGT+TGG - chr3_3:8185728-8185747 None:intergenic 25.0%
! TAGTCAAAATGGAATTCTAA+AGG - chr3_3:8185740-8185759 None:intergenic 25.0%
!! AGTCTAAAGTTTAGTCAAAA+TGG - chr3_3:8185751-8185770 None:intergenic 25.0%
! TTTCTCTCATGTAATCTTAA+GGG + chr3_3:8185770-8185789 Msa0440670:CDS 25.0%
! GCTTTCTTATAGTAGTATTA+AGG - chr3_3:8185857-8185876 None:intergenic 25.0%
AGGTGAAGAGAATAAATAAG+TGG + chr3_3:8178256-8178275 Msa0440670:intron 30.0%
GGTGAAGAGAATAAATAAGT+GGG + chr3_3:8178257-8178276 Msa0440670:intron 30.0%
GTTCACATCTTATGTTAACT+GGG - chr3_3:8178301-8178320 None:intergenic 30.0%
AGTTCACATCTTATGTTAAC+TGG - chr3_3:8178302-8178321 None:intergenic 30.0%
GAAATATATACACACACACT+AGG - chr3_3:8178339-8178358 None:intergenic 30.0%
TTTGTTTCCGGATCTATATT+CGG - chr3_3:8178389-8178408 None:intergenic 30.0%
AAGAGAAACTAAGATTTCGA+CGG - chr3_3:8178431-8178450 None:intergenic 30.0%
TTTGGTGAGAATTGAGAATT+AGG + chr3_3:8179105-8179124 Msa0440670:intron 30.0%
CATGGTTCAATCATCAAAAT+CGG - chr3_3:8179138-8179157 None:intergenic 30.0%
ATCATCTTAGGCAATATCTA+AGG - chr3_3:8179197-8179216 None:intergenic 30.0%
GTTGAAAGAATCATGAAGAT+AGG + chr3_3:8179233-8179252 Msa0440670:intron 30.0%
AGTAAGAAAGAGAGTTGTTT+AGG + chr3_3:8179574-8179593 Msa0440670:intron 30.0%
ATTGCATGCTCATTAAAGTT+GGG + chr3_3:8179782-8179801 Msa0440670:intron 30.0%
TAAGAGTTGTATTGTCAAGT+TGG + chr3_3:8180146-8180165 Msa0440670:intron 30.0%
AAGAGTTGTATTGTCAAGTT+GGG + chr3_3:8180147-8180166 Msa0440670:intron 30.0%
CATAATCAAACATCATCATC+AGG - chr3_3:8180264-8180283 None:intergenic 30.0%
GACTTATGAGATTTCTGATA+AGG + chr3_3:8180764-8180783 Msa0440670:intron 30.0%
AAAATCTTAAACTGTTGCAG+CGG - chr3_3:8180826-8180845 None:intergenic 30.0%
!!! CAGAGTATTTTGATCACAAA+CGG - chr3_3:8180916-8180935 None:intergenic 30.0%
!!! ATTTTCAAGTTGGGAAAATG+GGG + chr3_3:8180948-8180967 Msa0440670:intron 30.0%
GGTTAATTAAAACGGAATTG+AGG + chr3_3:8180983-8181002 Msa0440670:intron 30.0%
TATATACATGTGTTAGTCGT+AGG + chr3_3:8181020-8181039 Msa0440670:intron 30.0%
ATCATGTGTTTGTGTATATC+AGG + chr3_3:8181342-8181361 Msa0440670:intron 30.0%
GTAAATGCAGTAAACAACAA+AGG - chr3_3:8181662-8181681 None:intergenic 30.0%
! TTTAGGTTTCACTGAATTCA+TGG - chr3_3:8181774-8181793 None:intergenic 30.0%
TCATTGCAGTCTTACATATT+TGG - chr3_3:8181872-8181891 None:intergenic 30.0%
!! AAGCGGTAAGAAGTTTTATA+TGG + chr3_3:8181931-8181950 Msa0440670:intron 30.0%
! AGAGAAAAAATGGAGTTGAT+GGG + chr3_3:8182042-8182061 Msa0440670:intron 30.0%
ACATTCTTTCCCAATGTTAA+AGG + chr3_3:8182304-8182323 Msa0440670:intron 30.0%
ATAGGATCAATGTAACTGAA+AGG - chr3_3:8182413-8182432 None:intergenic 30.0%
TCAAACAAGTGAAATTTGTC+TGG + chr3_3:8182487-8182506 Msa0440670:intron 30.0%
! GTTTCAAATGCATTTTCCTT+TGG - chr3_3:8182518-8182537 None:intergenic 30.0%
TTCTTAAGATGCGAAATCAA+TGG + chr3_3:8182701-8182720 Msa0440670:intron 30.0%
!!! TTGTGTACTTGTTTTGATGA+CGG - chr3_3:8182757-8182776 None:intergenic 30.0%
ATCACCTTATTCTCTATGTT+AGG - chr3_3:8182888-8182907 None:intergenic 30.0%
TTGGGATCGTAAAGAATTAA+AGG + chr3_3:8182971-8182990 Msa0440670:intron 30.0%
! AAGTGTTGTTGAAGTTCATA+GGG - chr3_3:8183006-8183025 None:intergenic 30.0%
!! CAAGGCAGTATATATTTTTG+AGG - chr3_3:8183035-8183054 None:intergenic 30.0%
CTCAAAAATATATACTGCCT+TGG + chr3_3:8183033-8183052 Msa0440670:intron 30.0%
! GTATGGATTATGAAGGAATA+TGG - chr3_3:8183130-8183149 None:intergenic 30.0%
! TGATGATGTATGGATTATGA+AGG - chr3_3:8183137-8183156 None:intergenic 30.0%
! AAGATTTTACCCCCTAATTT+TGG - chr3_3:8183226-8183245 None:intergenic 30.0%
TCAAAAGAAACTATAAAGCG+TGG + chr3_3:8183268-8183287 Msa0440670:intron 30.0%
GAAGTAAAGGTTCATACTTT+GGG - chr3_3:8183424-8183443 None:intergenic 30.0%
TGAAGTAAAGGTTCATACTT+TGG - chr3_3:8183425-8183444 None:intergenic 30.0%
GGTCAACAAAATTGAAGTAA+AGG - chr3_3:8183437-8183456 None:intergenic 30.0%
AAAGGATAATTACAAGGTTG+TGG - chr3_3:8183509-8183528 None:intergenic 30.0%
TGAACATGAGTAATCACATT+TGG + chr3_3:8183559-8183578 Msa0440670:intron 30.0%
CCCTTCTATTAGAAAATTCA+AGG - chr3_3:8183605-8183624 None:intergenic 30.0%
!!! TTTTTTTTAAGGCCCAAAGA+AGG + chr3_3:8184211-8184230 Msa0440670:intron 30.0%
TCTTGATACTAACCTTCTTT+GGG - chr3_3:8184226-8184245 None:intergenic 30.0%
ATCTTGATACTAACCTTCTT+TGG - chr3_3:8184227-8184246 None:intergenic 30.0%
TGTGCAGATCATGTTATTAA+TGG + chr3_3:8184743-8184762 Msa0440670:intron 30.0%
ATAATTCCAATGGTAGATCT+TGG + chr3_3:8184938-8184957 Msa0440670:intron 30.0%
TCTGATACCATGTTGAAATT+TGG + chr3_3:8184967-8184986 Msa0440670:intron 30.0%
CTGATACCATGTTGAAATTT+GGG + chr3_3:8184968-8184987 Msa0440670:intron 30.0%
TGATACCATGTTGAAATTTG+GGG + chr3_3:8184969-8184988 Msa0440670:intron 30.0%
GATAAGTTAAATATCTTGCG+GGG - chr3_3:8185024-8185043 None:intergenic 30.0%
GGATAAGTTAAATATCTTGC+GGG - chr3_3:8185025-8185044 None:intergenic 30.0%
!!! GTGACATCATTTTTTAGGTA+TGG - chr3_3:8185203-8185222 None:intergenic 30.0%
CGTGTCAAATAATTAGAATG+AGG + chr3_3:8185481-8185500 Msa0440670:intron 30.0%
AACACAAACATATCAGAATC+TGG - chr3_3:8185535-8185554 None:intergenic 30.0%
AGATTCTGATATGTTTGTGT+TGG + chr3_3:8185534-8185553 Msa0440670:intron 30.0%
TATTGAAAAGGAACAAAGAG+AGG + chr3_3:8185648-8185667 Msa0440670:intron 30.0%
CTTTCTCTCATGTAATCTTA+AGG + chr3_3:8185769-8185788 Msa0440670:CDS 30.0%
TTGTTTCCGGATCTATATTC+GGG - chr3_3:8178388-8178407 None:intergenic 35.0%
ATCAAATTTGTGTAGCGTGA+TGG + chr3_3:8178692-8178711 Msa0440670:intron 35.0%
TATGTGAAAGCTTCAAATCC+AGG + chr3_3:8179008-8179027 Msa0440670:intron 35.0%
AAAGCTTCAAATCCAGGTAA+GGG + chr3_3:8179014-8179033 Msa0440670:intron 35.0%
!!! AGCATGATTAGGTTGAGTTT+TGG + chr3_3:8179087-8179106 Msa0440670:intron 35.0%
ATGTTGTCTAAGTTGTTGGA+AGG + chr3_3:8179751-8179770 Msa0440670:intron 35.0%
CAACTTTAATGAGCATGCAA+TGG - chr3_3:8179783-8179802 None:intergenic 35.0%
CATTGCATGCTCATTAAAGT+TGG + chr3_3:8179781-8179800 Msa0440670:intron 35.0%
TTGCATGCTCATTAAAGTTG+GGG + chr3_3:8179783-8179802 Msa0440670:intron 35.0%
CCTTTGTGCTCATTAAAGTT+GGG + chr3_3:8179861-8179880 Msa0440670:intron 35.0%
CTTTGTGCTCATTAAAGTTG+GGG + chr3_3:8179862-8179881 Msa0440670:intron 35.0%
TTTGTGCTCATTAAAGTTGG+GGG + chr3_3:8179863-8179882 Msa0440670:intron 35.0%
CCTTTGTGCTCATTAAAGTT+GGG + chr3_3:8179861-8179880 Msa0440670:intron 35.0%
CTTTGTGCTCATTAAAGTTG+GGG + chr3_3:8179862-8179881 Msa0440670:intron 35.0%
TTTGTGCTCATTAAAGTTGG+GGG + chr3_3:8179863-8179882 Msa0440670:intron 35.0%
! AAAATGGGGTGTTACAATGT+TGG + chr3_3:8180962-8180981 Msa0440670:intron 35.0%
! AGAAATTTTGTGTAGGCTAC+CGG - chr3_3:8181164-8181183 None:intergenic 35.0%
GTTACTGAAATTGCATAGAG+CGG - chr3_3:8181285-8181304 None:intergenic 35.0%
!! AGAGCTTTAGACTCAAATAG+CGG + chr3_3:8181481-8181500 Msa0440670:intron 35.0%
! TATCATCGACTGATACGTTT+AGG - chr3_3:8181791-8181810 None:intergenic 35.0%
TGATAATTCCATTGCGTGTT+TGG + chr3_3:8181806-8181825 Msa0440670:intron 35.0%
GATAATTCCATTGCGTGTTT+GGG + chr3_3:8181807-8181826 Msa0440670:intron 35.0%
TAGTCGTAGCAGAGAAAAAA+TGG + chr3_3:8182032-8182051 Msa0440670:intron 35.0%
CAGAGAAAAAATGGAGTTGA+TGG + chr3_3:8182041-8182060 Msa0440670:intron 35.0%
GAACATGTTTGGTTAATTGC+TGG + chr3_3:8182064-8182083 Msa0440670:intron 35.0%
! TGCTGCTATTTGTCACTAAA+TGG - chr3_3:8182280-8182299 None:intergenic 35.0%
!! TGAGATGTGTGTTGATTGAT+AGG - chr3_3:8182431-8182450 None:intergenic 35.0%
!! TTTGATGACGGGTTATTTAC+TGG - chr3_3:8182745-8182764 None:intergenic 35.0%
!!! TGTGTACTTGTTTTGATGAC+GGG - chr3_3:8182756-8182775 None:intergenic 35.0%
ACGTCCTAACATAGAGAATA+AGG + chr3_3:8182881-8182900 Msa0440670:intron 35.0%
AAACTTTCAACGCATACTTC+CGG + chr3_3:8182911-8182930 Msa0440670:intron 35.0%
! AGACTTCAAAGTATCTCTCT+TGG + chr3_3:8182952-8182971 Msa0440670:intron 35.0%
! GACTTCAAAGTATCTCTCTT+GGG + chr3_3:8182953-8182972 Msa0440670:intron 35.0%
! AGTGTTGTTGAAGTTCATAG+GGG - chr3_3:8183005-8183024 None:intergenic 35.0%
! CAAGTGTTGTTGAAGTTCAT+AGG - chr3_3:8183007-8183026 None:intergenic 35.0%
ACAATTTAGTCCAAGACTCT+TGG + chr3_3:8183101-8183120 Msa0440670:intron 35.0%
AATATGGAAACCAAGAGTCT+TGG - chr3_3:8183114-8183133 None:intergenic 35.0%
! TTTTACCCCCTAATTTTGGA+GGG - chr3_3:8183222-8183241 None:intergenic 35.0%
! ATTTTACCCCCTAATTTTGG+AGG - chr3_3:8183223-8183242 None:intergenic 35.0%
ACATTTGCAGAACGATTCTT+TGG + chr3_3:8183291-8183310 Msa0440670:intron 35.0%
!! ATACTTTGGGTACTGGTATT+TGG - chr3_3:8183411-8183430 None:intergenic 35.0%
CTTCGGTTATGATTCTTCAA+AGG - chr3_3:8183527-8183546 None:intergenic 35.0%
! ATAAAGGCTTGGTTATACTG+TGG - chr3_3:8183630-8183649 None:intergenic 35.0%
TGCAGATGATTATAAAGGCT+TGG - chr3_3:8183641-8183660 None:intergenic 35.0%
TAATCTCCATCGAAACTGTT+AGG + chr3_3:8183715-8183734 Msa0440670:intron 35.0%
TATTCTCCTAACAGTTTCGA+TGG - chr3_3:8183724-8183743 None:intergenic 35.0%
!! ATTTCTGGAATGACATCGAA+AGG + chr3_3:8183970-8183989 Msa0440670:intron 35.0%
GATGGAAATTATTTCCTCTG+CGG + chr3_3:8184050-8184069 Msa0440670:intron 35.0%
AGATACACAAACAGACACTT+CGG - chr3_3:8184170-8184189 None:intergenic 35.0%
TCTTGTAAAACCAGCTTGTA+AGG + chr3_3:8184840-8184859 Msa0440670:intron 35.0%
GTGGCAATGAATAATTCCAA+TGG + chr3_3:8184928-8184947 Msa0440670:intron 35.0%
! TGCATTGCGGATTTTCAATT+CGG - chr3_3:8185111-8185130 None:intergenic 35.0%
!!! TTTTTTAGGTATGGGAGAGA+CGG - chr3_3:8185194-8185213 None:intergenic 35.0%
CACAAAAAAATGGAAGGACT+TGG - chr3_3:8185569-8185588 None:intergenic 35.0%
!!! CAAGTCCTTCCATTTTTTTG+TGG + chr3_3:8185567-8185586 Msa0440670:intron 35.0%
GTTTGCCACAAAAAAATGGA+AGG - chr3_3:8185575-8185594 None:intergenic 35.0%
GATCGTTTGCCACAAAAAAA+TGG - chr3_3:8185579-8185598 None:intergenic 35.0%
TGAATCAGAATGGAGATCAA+TGG + chr3_3:8185817-8185836 Msa0440670:CDS 35.0%
GCAATACCCGAATATAGATC+CGG + chr3_3:8178379-8178398 Msa0440670:CDS 40.0%
!! ATTTGTGTAGCGTGATGGAT+AGG + chr3_3:8178697-8178716 Msa0440670:intron 40.0%
! AACGAGCGTCTCTTTTATGT+CGG - chr3_3:8178946-8178965 None:intergenic 40.0%
GAAAGCTTCAAATCCAGGTA+AGG + chr3_3:8179013-8179032 Msa0440670:intron 40.0%
! GATCGCATCGGAACAATTTT+GGG - chr3_3:8179521-8179540 None:intergenic 40.0%
TGTCTTGAAGTTGCATGAGT+CGG + chr3_3:8179669-8179688 Msa0440670:intron 40.0%
CACGATGTTGTCTAAGTTGT+TGG + chr3_3:8179747-8179766 Msa0440670:intron 40.0%
TGCATGCTCATTAAAGTTGG+GGG + chr3_3:8179784-8179803 Msa0440670:intron 40.0%
TCATTAAAGTTGGGGGCTTT+AGG + chr3_3:8179791-8179810 Msa0440670:intron 40.0%
! AGCCTTGTGCTCATTAAAGT+TGG + chr3_3:8179820-8179839 Msa0440670:intron 40.0%
GCCTTGTGCTCATTAAAGTT+GGG + chr3_3:8179821-8179840 Msa0440670:intron 40.0%
CCTTGTGCTCATTAAAGTTG+GGG + chr3_3:8179822-8179841 Msa0440670:intron 40.0%
CTTGTGCTCATTAAAGTTGG+GGG + chr3_3:8179823-8179842 Msa0440670:intron 40.0%
TCATTAAAGTTGGGGGCTTT+AGG + chr3_3:8179791-8179810 Msa0440670:intron 40.0%
GCCTTTGTGCTCATTAAAGT+TGG + chr3_3:8179860-8179879 Msa0440670:intron 40.0%
CCCAACTTTAATGAGCACAA+AGG - chr3_3:8179824-8179843 None:intergenic 40.0%
TCATTAAAGTTGGGGGCTTT+AGG + chr3_3:8179791-8179810 Msa0440670:intron 40.0%
CCTTTGTGCTCGTTAAAGTT+GGG + chr3_3:8179901-8179920 Msa0440670:intron 40.0%
CTTTGTGCTCGTTAAAGTTG+GGG + chr3_3:8179902-8179921 Msa0440670:intron 40.0%
TTTGTGCTCGTTAAAGTTGG+GGG + chr3_3:8179903-8179922 Msa0440670:intron 40.0%
TCGTTAAAGTTGGGGGATTT+AGG + chr3_3:8179910-8179929 Msa0440670:intron 40.0%
GCCTTTGTGCTCATTAAAGT+TGG + chr3_3:8179860-8179879 Msa0440670:intron 40.0%
CCCAACTTTAATGAGCACAA+AGG - chr3_3:8179824-8179843 None:intergenic 40.0%
TCATTAAAGTTGGGGGCTTT+AGG + chr3_3:8179791-8179810 Msa0440670:intron 40.0%
TGCTCATTTATGTTGTTGGC+TGG + chr3_3:8180013-8180032 Msa0440670:intron 40.0%
TAACATCGTACATCTGCATG+TGG - chr3_3:8180041-8180060 None:intergenic 40.0%
TAATACCTGCACATTACCCA+CGG - chr3_3:8180636-8180655 None:intergenic 40.0%
GTGCAGGTATTAAAGACTAG+AGG + chr3_3:8180644-8180663 Msa0440670:intron 40.0%
CTAGGTGCTCTGATATGTAA+CGG + chr3_3:8180696-8180715 Msa0440670:intron 40.0%
TAGGTGCTCTGATATGTAAC+GGG + chr3_3:8180697-8180716 Msa0440670:intron 40.0%
ATTTAAAAGTCTTGGCACGC+AGG - chr3_3:8180790-8180809 None:intergenic 40.0%
TAGGTGCTTCTTGACGAAAT+TGG + chr3_3:8181081-8181100 Msa0440670:intron 40.0%
AGGTGCTTCTTGACGAAATT+GGG + chr3_3:8181082-8181101 Msa0440670:intron 40.0%
GGTAGCCTACACAAAATTTC+TGG + chr3_3:8181163-8181182 Msa0440670:intron 40.0%
! TCAGGCCAGAAATTTTGTGT+AGG - chr3_3:8181171-8181190 None:intergenic 40.0%
GTTTAGGCTAAAGCCACAAT+CGG - chr3_3:8181239-8181258 None:intergenic 40.0%
AACAAAGACACACTCAGCTT+CGG - chr3_3:8181315-8181334 None:intergenic 40.0%
! AGTGTCACTAAAGAGGTATG+TGG - chr3_3:8181558-8181577 None:intergenic 40.0%
! CTTCGTTAGTGTCACTAAAG+AGG - chr3_3:8181565-8181584 None:intergenic 40.0%
TCACTGAATTCATGGACAGA+GGG - chr3_3:8181766-8181785 None:intergenic 40.0%
TTCACTGAATTCATGGACAG+AGG - chr3_3:8181767-8181786 None:intergenic 40.0%
TATGATTCCCAAACACGCAA+TGG - chr3_3:8181817-8181836 None:intergenic 40.0%
ATATGGATGTGGAATCGAAG+CGG + chr3_3:8181914-8181933 Msa0440670:intron 40.0%
ATATGGATGTGGAATCGATG+CGG + chr3_3:8181948-8181967 Msa0440670:intron 40.0%
GATGCGGTAAGTATTACGTA+GGG + chr3_3:8181964-8181983 Msa0440670:intron 40.0%
ATGCGGTAAGTATTACGTAG+GGG + chr3_3:8181965-8181984 Msa0440670:intron 40.0%
GTTTGGTTAATTGCTGGTAG+AGG + chr3_3:8182070-8182089 Msa0440670:intron 40.0%
! CTGAGTGCAGATTGGTTAAT+AGG + chr3_3:8182107-8182126 Msa0440670:intron 40.0%
AATTTGTCTGGCACATCCAA+AGG + chr3_3:8182499-8182518 Msa0440670:intron 40.0%
TGTTTACTGTTCCTTACGAG+CGG - chr3_3:8183084-8183103 None:intergenic 40.0%
! TGACTTCTGGTGATGATGTA+TGG - chr3_3:8183147-8183166 None:intergenic 40.0%
ACATCTACCCCTCCAAAATT+AGG + chr3_3:8183211-8183230 Msa0440670:intron 40.0%
CATCTACCCCTCCAAAATTA+GGG + chr3_3:8183212-8183231 Msa0440670:intron 40.0%
ATCTACCCCTCCAAAATTAG+GGG + chr3_3:8183213-8183232 Msa0440670:intron 40.0%
!! TTTACCCCCTAATTTTGGAG+GGG - chr3_3:8183221-8183240 None:intergenic 40.0%
TTGTCAGTGGCACGATTAAT+TGG - chr3_3:8183324-8183343 None:intergenic 40.0%
!!! ATTCAGGAGTATCCTTTTGG+CGG - chr3_3:8183382-8183401 None:intergenic 40.0%
!!! AGCATTCAGGAGTATCCTTT+TGG - chr3_3:8183385-8183404 None:intergenic 40.0%
!! TGGTATTTGGAGAAGCATTC+AGG - chr3_3:8183398-8183417 None:intergenic 40.0%
AAGGTTCATACTTTGGGTAC+TGG - chr3_3:8183418-8183437 None:intergenic 40.0%
TTCTCACTAATAGTAGGGTC+TGG + chr3_3:8183463-8183482 Msa0440670:intron 40.0%
ACTCATGTTCACATGTCGTT+TGG - chr3_3:8183550-8183569 None:intergenic 40.0%
GTTTCGATGGAGATTATCCT+TGG - chr3_3:8183711-8183730 None:intergenic 40.0%
TCTGTGAAAATCGAGTCGAT+TGG + chr3_3:8183772-8183791 Msa0440670:intron 40.0%
CTGTGAAAATCGAGTCGATT+GGG + chr3_3:8183773-8183792 Msa0440670:intron 40.0%
AGTTGAAGCAAGAGTTTCAC+TGG + chr3_3:8183934-8183953 Msa0440670:intron 40.0%
TCATTCCAGAAATTCTGTGC+AGG - chr3_3:8183963-8183982 None:intergenic 40.0%
AATGACATCGAAAGGAAGAG+CGG + chr3_3:8183978-8183997 Msa0440670:intron 40.0%
ACTCTGCATAAACCCACAAT+CGG - chr3_3:8184088-8184107 None:intergenic 40.0%
ATTGTGGGTTTATGCAGAGT+TGG + chr3_3:8184088-8184107 Msa0440670:intron 40.0%
TGCATGATGCCAAAATGACA+AGG + chr3_3:8184698-8184717 Msa0440670:intron 40.0%
GCATGATGCCAAAATGACAA+GGG + chr3_3:8184699-8184718 Msa0440670:intron 40.0%
!! CTTCTGTTCCCTTGTCATTT+TGG - chr3_3:8184710-8184729 None:intergenic 40.0%
! TGTGTTCCACTTTCCCATTT+TGG + chr3_3:8184775-8184794 Msa0440670:intron 40.0%
ATGATGCCAAAATGGGAAAG+TGG - chr3_3:8184784-8184803 None:intergenic 40.0%
GAAGTGCATGATGCCAAAAT+GGG - chr3_3:8184694-8184713 None:intergenic 40.0%
TGAAGTGCATGATGCCAAAA+TGG - chr3_3:8184693-8184712 None:intergenic 40.0%
TAAAACCAGCTTGTAAGGTG+AGG + chr3_3:8184845-8184864 Msa0440670:intron 40.0%
GTCTATCCAAGATCTACCAT+TGG - chr3_3:8184947-8184966 None:intergenic 40.0%
TTAGGCCCCAAATTTCAACA+TGG - chr3_3:8184977-8184996 None:intergenic 40.0%
GTTAAATATCTTGCGGGGTT+TGG - chr3_3:8185019-8185038 None:intergenic 40.0%
!!! ATTTTTAGGTATGGGAGAGG+CGG - chr3_3:8185067-8185086 None:intergenic 40.0%
!!! TGGATTTTTAGGTATGGGAG+AGG - chr3_3:8185070-8185089 None:intergenic 40.0%
! TTTTCAATTCGGATCGGACA+AGG - chr3_3:8185100-8185119 None:intergenic 40.0%
! TGCGGATTTTCAATTCGGAT+CGG - chr3_3:8185106-8185125 None:intergenic 40.0%
!! GTCTCTGAGATAAGTGATTG+TGG + chr3_3:8185613-8185632 Msa0440670:intron 40.0%
GATAAGTGATTGTGGTGTAG+AGG + chr3_3:8185621-8185640 Msa0440670:intron 40.0%
TGAAAAGGAACAAAGAGAGG+AGG + chr3_3:8185651-8185670 Msa0440670:intron 40.0%
! TTCGGGTATTGCTGCCTATT+AGG - chr3_3:8178371-8178390 None:intergenic 45.0%
! GGCGGTAACTTCTTTGTTTC+CGG - chr3_3:8178401-8178420 None:intergenic 45.0%
TAAGATTTCGACGGTAGCGA+CGG - chr3_3:8178422-8178441 None:intergenic 45.0%
! AAGTTAGTCTCACCCTTACC+TGG - chr3_3:8179029-8179048 None:intergenic 45.0%
GTGAGTAACATTGCTCGCAA+TGG - chr3_3:8179474-8179493 None:intergenic 45.0%
! GGATCGCATCGGAACAATTT+TGG - chr3_3:8179522-8179541 None:intergenic 45.0%
!! ACAGACTTCTAGAGCTTCTG+AGG - chr3_3:8179603-8179622 None:intergenic 45.0%
!! GAAGCTCTAGAAGTCTGTTC+TGG + chr3_3:8179605-8179624 Msa0440670:intron 45.0%
TTTAATGAGCACAAGGCTGC+CGG - chr3_3:8179818-8179837 None:intergenic 45.0%
CCCCAACTTTAATGAGCACA+AGG - chr3_3:8179825-8179844 None:intergenic 45.0%
TTAATGAGCACAAAGGCTGC+CGG - chr3_3:8179857-8179876 None:intergenic 45.0%
GCCTTTGTGCTCGTTAAAGT+TGG + chr3_3:8179900-8179919 Msa0440670:intron 45.0%
CCCAACTTTAACGAGCACAA+AGG - chr3_3:8179904-8179923 None:intergenic 45.0%
TTAATGAGCACAAAGGCTGC+CGG - chr3_3:8179857-8179876 None:intergenic 45.0%
TCTTCAACGTGTGAGCACAA+AGG - chr3_3:8179984-8180003 None:intergenic 45.0%
AGGCAACATATACGCAGAAG+GGG - chr3_3:8180610-8180629 None:intergenic 45.0%
GAGGCAACATATACGCAGAA+GGG - chr3_3:8180611-8180630 None:intergenic 45.0%
! TGCTCTGATATGTAACGGGA+TGG + chr3_3:8180701-8180720 Msa0440670:intron 45.0%
! GCTCTGATATGTAACGGGAT+GGG + chr3_3:8180702-8180721 Msa0440670:intron 45.0%
! CTCTGATATGTAACGGGATG+GGG + chr3_3:8180703-8180722 Msa0440670:intron 45.0%
! TCCATGACTTGCACACACAT+TGG + chr3_3:8181119-8181138 Msa0440670:intron 45.0%
TCCAATGTGTGTGCAAGTCA+TGG - chr3_3:8181123-8181142 None:intergenic 45.0%
ACTTGCACACACATTGGAGT+TGG + chr3_3:8181125-8181144 Msa0440670:intron 45.0%
!! ATTTCTGGCCTGAAGTCGAA+AGG + chr3_3:8181178-8181197 Msa0440670:intron 45.0%
! AAAGGAAGCGTAGGAAGTTG+AGG + chr3_3:8181196-8181215 Msa0440670:intron 45.0%
GCTCTTCCTGCTTTCAACTT+GGG - chr3_3:8181466-8181485 None:intergenic 45.0%
AGCTCTTCCTGCTTTCAACT+TGG - chr3_3:8181467-8181486 None:intergenic 45.0%
CGATGCGGTAAGTATTACGT+AGG + chr3_3:8181963-8181982 Msa0440670:intron 45.0%
!! GGAGTTGATGGGAACATGTT+TGG + chr3_3:8182053-8182072 Msa0440670:intron 45.0%
GTTAATTGCTGGTAGAGGCT+TGG + chr3_3:8182075-8182094 Msa0440670:intron 45.0%
!! AATTGGTGCTGAGTGCAGAT+TGG + chr3_3:8182099-8182118 Msa0440670:intron 45.0%
TCTATGTTAGGACGTCGATG+TGG - chr3_3:8182876-8182895 None:intergenic 45.0%
! CGCATACTTCCGGAACATTT+TGG + chr3_3:8182921-8182940 Msa0440670:intron 45.0%
TACTTCTCATGTACGTGCCA+AGG - chr3_3:8183053-8183072 None:intergenic 45.0%
GTTTACTGTTCCTTACGAGC+GGG - chr3_3:8183083-8183102 None:intergenic 45.0%
TCTACCCCTCCAAAATTAGG+GGG + chr3_3:8183214-8183233 Msa0440670:intron 45.0%
! GTTCACATGTCGTTTGGCTT+CGG - chr3_3:8183544-8183563 None:intergenic 45.0%
!! AACTTCATTGGCTCTTGCGA+CGG - chr3_3:8183676-8183695 None:intergenic 45.0%
GATGGGTGTAGAGTAAGAAG+TGG + chr3_3:8183824-8183843 Msa0440670:intron 45.0%
! AGTTTCATGTGTCGACCACT+CGG - chr3_3:8183855-8183874 None:intergenic 45.0%
ATGACATCGAAAGGAAGAGC+GGG + chr3_3:8183979-8183998 Msa0440670:intron 45.0%
TTCCATCAACAACCAGCTCT+CGG - chr3_3:8184037-8184056 None:intergenic 45.0%
TAGATGCCATCTCCGATTGT+GGG + chr3_3:8184073-8184092 Msa0440670:intron 45.0%
CATAAACCCACAATCGGAGA+TGG - chr3_3:8184082-8184101 None:intergenic 45.0%
TTGGCATCATGCACTTCACA+TGG - chr3_3:8184794-8184813 None:intergenic 45.0%
TTGGCATCATGCACTTCACA+TGG + chr3_3:8184794-8184813 Msa0440670:intron 45.0%
GATGGTTCGATTGGTGAGTT+AGG - chr3_3:8184995-8185014 None:intergenic 45.0%
!!! GGATCGGACAAGGTTAGTTT+TGG - chr3_3:8185090-8185109 None:intergenic 45.0%
!! ATAAACAAATAAATAAAAAT+AGG - chr3_3:8181423-8181442 None:intergenic 5.0%
!!! AAATAATTCTTTTTTTTTTA+AGG + chr3_3:8184200-8184219 Msa0440670:intron 5.0%
!!! ATTATTATTTTTTTTTTTGA+AGG + chr3_3:8184277-8184296 Msa0440670:intron 5.0%
!! AAATTAAATAAAATATTTAG+TGG - chr3_3:8185324-8185343 None:intergenic 5.0%
!! ATTTATGTTAAAATTAAATT+AGG - chr3_3:8185389-8185408 None:intergenic 5.0%
GCGAGCGATGAATGTCAGTA+CGG - chr3_3:8179287-8179306 None:intergenic 50.0%
CCATTGCGAGCAAGGACTTA+GGG + chr3_3:8179424-8179443 Msa0440670:intron 50.0%
CGAGCAAAGCGTGCATTATG+GGG - chr3_3:8179451-8179470 None:intergenic 50.0%
GCGAGCAAAGCGTGCATTAT+GGG - chr3_3:8179452-8179471 None:intergenic 50.0%
GTTACTCACCACTGCGAGTT+AGG + chr3_3:8179485-8179504 Msa0440670:intron 50.0%
ACTAACAGCCTAACTCGCAG+TGG - chr3_3:8179496-8179515 None:intergenic 50.0%
CTCATGTCTACACGTGCGAA+AGG - chr3_3:8179543-8179562 None:intergenic 50.0%
TCGCACGTGTAGACATGAGA+TGG + chr3_3:8179544-8179563 Msa0440670:intron 50.0%
TTAATGAGCACAAGGCTGCC+GGG - chr3_3:8179817-8179836 None:intergenic 50.0%
TAATGAGCACAAAGGCTGCC+GGG - chr3_3:8179856-8179875 None:intergenic 50.0%
TTAACGAGCACAAAGGCTGC+CGG - chr3_3:8179897-8179916 None:intergenic 50.0%
AAAGTTGGGGGATTTAGGCC+CGG + chr3_3:8179915-8179934 Msa0440670:intron 50.0%
TAATGAGCACAAAGGCTGCC+GGG - chr3_3:8179856-8179875 None:intergenic 50.0%
CGAGGCAACATATACGCAGA+AGG - chr3_3:8180612-8180631 None:intergenic 50.0%
GTATATGTTGCCTCGACCGT+GGG + chr3_3:8180617-8180636 Msa0440670:intron 50.0%
GGACTCCTCACTTTGTGTCT+AGG + chr3_3:8180678-8180697 Msa0440670:intron 50.0%
GAGCACCTAGACACAAAGTG+AGG - chr3_3:8180686-8180705 None:intergenic 50.0%
! GTAGGTGTAGCAAGAAGTGC+AGG + chr3_3:8181038-8181057 Msa0440670:intron 50.0%
TGCACACACATTGGAGTTGG+AGG + chr3_3:8181128-8181147 Msa0440670:intron 50.0%
ACACACATTGGAGTTGGAGG+AGG + chr3_3:8181131-8181150 Msa0440670:intron 50.0%
AGTTGGAGGAGGAGCTTAAC+CGG + chr3_3:8181142-8181161 Msa0440670:intron 50.0%
CTACGCTTCCTTTCGACTTC+AGG - chr3_3:8181189-8181208 None:intergenic 50.0%
! CTGAAGTCGAAAGGAAGCGT+AGG + chr3_3:8181187-8181206 Msa0440670:intron 50.0%
GTTTGCTCCATCTCCGATTG+TGG + chr3_3:8181223-8181242 Msa0440670:intron 50.0%
GCTAAAGCCACAATCGGAGA+TGG - chr3_3:8181233-8181252 None:intergenic 50.0%
TTACGTAGGGGTCATCTGTG+TGG + chr3_3:8181977-8181996 Msa0440670:intron 50.0%
GCTGGTAGAGGCTTGGAAAT+TGG + chr3_3:8182082-8182101 Msa0440670:intron 50.0%
GTAGTAAGTTCCCGCTCGTA+AGG + chr3_3:8183070-8183089 Msa0440670:intron 50.0%
GATTGCTTGTGCGTGACTTC+TGG - chr3_3:8183160-8183179 None:intergenic 50.0%
! CGTGCCACTGACAAATTTCC+CGG + chr3_3:8183330-8183349 Msa0440670:intron 50.0%
CGATCCGGGAAATTTGTCAG+TGG - chr3_3:8183337-8183356 None:intergenic 50.0%
AATGTACTTGCCCGAGCGAT+GGG + chr3_3:8183807-8183826 Msa0440670:intron 50.0%
TTACTCTACACCCATCGCTC+GGG - chr3_3:8183820-8183839 None:intergenic 50.0%
CTTACTCTACACCCATCGCT+CGG - chr3_3:8183821-8183840 None:intergenic 50.0%
GGGTGTAGAGTAAGAAGTGG+AGG + chr3_3:8183827-8183846 Msa0440670:intron 50.0%
TAAGAAGTGGAGGTTCCGAG+TGG + chr3_3:8183837-8183856 Msa0440670:intron 50.0%
TCCACGACTTGCAGACACAT+CGG + chr3_3:8183911-8183930 Msa0440670:intron 50.0%
GGTAGCCTGCACAGAATTTC+TGG + chr3_3:8183955-8183974 Msa0440670:intron 50.0%
!! AGCGGCAACTTCTGAAGTGA+AGG + chr3_3:8184003-8184022 Msa0440670:intron 50.0%
!! GGCAACTTCTGAAGTGAAGG+TGG + chr3_3:8184006-8184025 Msa0440670:intron 50.0%
AACCGAGAGCTGGTTGTTGA+TGG + chr3_3:8184032-8184051 Msa0440670:intron 50.0%
GTAGATGCCATCTCCGATTG+TGG + chr3_3:8184072-8184091 Msa0440670:intron 50.0%
!! CTTGTAAGGTGAGGAGTGCT+CGG + chr3_3:8184854-8184873 Msa0440670:intron 50.0%
!! TTGTAAGGTGAGGAGTGCTC+GGG + chr3_3:8184855-8184874 Msa0440670:intron 50.0%
!! GGGTTTGGTGATGGTTCGAT+TGG - chr3_3:8185004-8185023 None:intergenic 50.0%
!! TATCTTGCGGGGTTTGGTGA+TGG - chr3_3:8185013-8185032 None:intergenic 50.0%
GGAACAAAGAGAGGAGGTAG+AGG + chr3_3:8185657-8185676 Msa0440670:intron 50.0%
AACACTCGCAACTGCGAGCT+AGG + chr3_3:8179320-8179339 Msa0440670:intron 55.0%
GCTCGCAATGGAGAGCTTAC+AGG - chr3_3:8179393-8179412 None:intergenic 55.0%
GCGAGCTATTCTGCTCGCAA+TGG - chr3_3:8179405-8179424 None:intergenic 55.0%
ATAGCTCGCCATTGCGAGCA+AGG + chr3_3:8179416-8179435 Msa0440670:intron 55.0%
GCCATTGCGAGCAAGGACTT+AGG + chr3_3:8179423-8179442 Msa0440670:intron 55.0%
CCCTAAGTCCTTGCTCGCAA+TGG - chr3_3:8179427-8179446 None:intergenic 55.0%
GGCGAGCAAAGCGTGCATTA+TGG - chr3_3:8179453-8179472 None:intergenic 55.0%
CACGTGCGAAAGGATCGCAT+CGG - chr3_3:8179533-8179552 None:intergenic 55.0%
!! AAAGTTGGGGGCTTTAGGCC+CGG + chr3_3:8179796-8179815 Msa0440670:intron 55.0%
!! AAAGTTGGGGGCTTTAGGCC+CGG + chr3_3:8179796-8179815 Msa0440670:intron 55.0%
!! AAAGTTGGGGGCTTTAGGCC+CGG + chr3_3:8179796-8179815 Msa0440670:intron 55.0%
TAACGAGCACAAAGGCTGCC+GGG - chr3_3:8179896-8179915 None:intergenic 55.0%
!! AAAGTTGGGGGCTTTAGGCC+CGG + chr3_3:8179796-8179815 Msa0440670:intron 55.0%
CGTATATGTTGCCTCGACCG+TGG + chr3_3:8180616-8180635 Msa0440670:intron 55.0%
!! AGACTAGAGGCGTTCGTGAG+TGG + chr3_3:8180657-8180676 Msa0440670:intron 55.0%
GACGCGTGGTTGACAGATGT+AGG + chr3_3:8181062-8181081 Msa0440670:intron 55.0%
GTAGGGGTCATCTGTGTGGT+AGG + chr3_3:8181981-8182000 Msa0440670:intron 55.0%
TTCCTGTCATGGAGCGATCC+GGG - chr3_3:8183351-8183370 None:intergenic 55.0%
GTTCCTGTCATGGAGCGATC+CGG - chr3_3:8183352-8183371 None:intergenic 55.0%
GATCGCTCCATGACAGGAAC+AGG + chr3_3:8183352-8183371 Msa0440670:intron 55.0%
CGGTGTTCCTGTTCCTGTCA+TGG - chr3_3:8183362-8183381 None:intergenic 55.0%
GGAACAGGAACACCGCCAAA+AGG + chr3_3:8183367-8183386 Msa0440670:intron 55.0%
GAATGTACTTGCCCGAGCGA+TGG + chr3_3:8183806-8183825 Msa0440670:intron 55.0%
TCCGATGTGTCTGCAAGTCG+TGG - chr3_3:8183915-8183934 None:intergenic 55.0%
TCGAAAGGAAGAGCGGGAAG+CGG + chr3_3:8183985-8184004 Msa0440670:intron 55.0%
AAGGTGGTACAACCGAGAGC+TGG + chr3_3:8184022-8184041 Msa0440670:intron 55.0%
GCACTCCTCACCTTACAAGC+TGG - chr3_3:8184853-8184872 None:intergenic 55.0%
!! TGTAAGGTGAGGAGTGCTCG+GGG + chr3_3:8184856-8184875 Msa0440670:intron 55.0%
ACCCTCATGCTCAGACCCAA+TGG + chr3_3:8184896-8184915 Msa0440670:intron 55.0%
CCCATTGGGTCTGAGCATGA+GGG - chr3_3:8184900-8184919 None:intergenic 55.0%
CCCTCATGCTCAGACCCAAT+GGG + chr3_3:8184897-8184916 Msa0440670:intron 55.0%
TGCCACGCTTCAAGCCCATT+GGG - chr3_3:8184914-8184933 None:intergenic 55.0%
TTGCCACGCTTCAAGCCCAT+TGG - chr3_3:8184915-8184934 None:intergenic 55.0%
GGTGTGGTCTGAGGGAGAAA+TGG - chr3_3:8185046-8185065 None:intergenic 55.0%
GATTTCGACGGTAGCGACGG+CGG - chr3_3:8178419-8178438 None:intergenic 60.0%
! GCGAGTTGTGTTGCTCGCAG+TGG - chr3_3:8179358-8179377 None:intergenic 60.0%
GTGTGAGCACAAAGGCTGCC+GGG - chr3_3:8179976-8179995 None:intergenic 60.0%
CGTGTGAGCACAAAGGCTGC+CGG - chr3_3:8179977-8179996 None:intergenic 60.0%
CTGCACATTACCCACGGTCG+AGG - chr3_3:8180630-8180649 None:intergenic 60.0%
CTCGACCGTGGGTAATGTGC+AGG + chr3_3:8180628-8180647 Msa0440670:intron 60.0%
! GACGCGCCCAAGTTGAAAGC+AGG + chr3_3:8181457-8181476 Msa0440670:intron 60.0%
TTCCCGGATCGCTCCATGAC+AGG + chr3_3:8183346-8183365 Msa0440670:intron 60.0%
GGAGATGGCATCTACCGCAG+AGG - chr3_3:8184067-8184086 None:intergenic 60.0%
GCCCATTGGGTCTGAGCATG+AGG - chr3_3:8184901-8184920 None:intergenic 60.0%
! GACCCAATGGGCTTGAAGCG+TGG + chr3_3:8184909-8184928 Msa0440670:intron 60.0%
TAGGTATGGGAGAGGCGGTG+TGG - chr3_3:8185062-8185081 None:intergenic 60.0%
TTGCTCGCAGTGGCGAGCTC+TGG - chr3_3:8179348-8179367 None:intergenic 65.0%
! CAAGAAGTGCAGGCGACGCG+TGG + chr3_3:8181048-8181067 Msa0440670:intron 65.0%
!! AAGGTGAGGAGTGCTCGGGG+CGG + chr3_3:8184859-8184878 Msa0440670:intron 65.0%
GGAGAGGCGGTGTGGTCTGA+GGG - chr3_3:8185054-8185073 None:intergenic 65.0%
GGGAGAGGCGGTGTGGTCTG+AGG - chr3_3:8185055-8185074 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 8178197 8185944 8178197 ID=Msa0440670;Name=Msa0440670
chr3_3 mRNA 8178197 8185944 8178197 ID=Msa0440670-mRNA-1;Parent=Msa0440670;Name=Msa0440670-mRNA-1;_AED=0.78;_eAED=0.78;_QI=0|0|0|0.2|0|0|5|0|95
chr3_3 exon 8178197 8178202 8178197 ID=Msa0440670-mRNA-1:exon:1759;Parent=Msa0440670-mRNA-1
chr3_3 exon 8178376 8178441 8178376 ID=Msa0440670-mRNA-1:exon:1760;Parent=Msa0440670-mRNA-1
chr3_3 exon 8178783 8178788 8178783 ID=Msa0440670-mRNA-1:exon:1761;Parent=Msa0440670-mRNA-1
chr3_3 exon 8184299 8184331 8184299 ID=Msa0440670-mRNA-1:exon:1762;Parent=Msa0440670-mRNA-1
chr3_3 exon 8185768 8185944 8185768 ID=Msa0440670-mRNA-1:exon:1763;Parent=Msa0440670-mRNA-1
chr3_3 CDS 8178197 8178202 8178197 ID=Msa0440670-mRNA-1:cds;Parent=Msa0440670-mRNA-1
chr3_3 CDS 8178376 8178441 8178376 ID=Msa0440670-mRNA-1:cds;Parent=Msa0440670-mRNA-1
chr3_3 CDS 8178783 8178788 8178783 ID=Msa0440670-mRNA-1:cds;Parent=Msa0440670-mRNA-1
chr3_3 CDS 8184299 8184331 8184299 ID=Msa0440670-mRNA-1:cds;Parent=Msa0440670-mRNA-1
chr3_3 CDS 8185768 8185944 8185768 ID=Msa0440670-mRNA-1:cds;Parent=Msa0440670-mRNA-1
Gene Sequence

>Msa0440670

ATGTTAGCAGCAATACCCGAATATAGATCCGGAAACAAAGAAGTTACCGCCGTCGCTACCGTCGAAATCTTAGTAAAAGATCAAGATTATTATATTTATCAAGTAGAATATACTTTCTCTCATGTAATCTTAAGGGCATCGATTCTTATAAGAATATATTTGAATCAGAATGGAGATCAATGGTATTGTGAAGATGACCTTAATACTACTATAAGAAAGCTTTTGAATAGAAGAATATGTTTTCTCAAGATTAGTGTCCTTAAGTTTTTTAAATTTGGCAGAACTTAG

Protein sequence

>Msa0440670

MLAAIPEYRSGNKEVTAVATVEILVKDQDYYIYQVEYTFSHVILRASILIRIYLNQNGDQWYCEDDLNTTIRKLLNRRICFLKISVLKFFKFGRT*