Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Gene ID | Type | Classification |
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Gene ID | Type | Classification |
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Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0006110 | Msa0440670 | 0.800512 | 1.391754e-48 | -8.615850e-47 |
Msa0440670 | Msa0479340 | 0.802388 | 5.745926e-49 | -8.615850e-47 |
Msa0440670 | Msa0545700 | 0.804378 | 2.223009e-49 | -8.615850e-47 |
Msa0440670 | Msa0679290 | -0.804987 | 1.659355e-49 | -8.615850e-47 |
Msa0440670 | Msa0861130 | 0.801343 | 9.415376e-49 | -8.615850e-47 |
Msa0440670 | Msa0927380 | 0.807032 | 6.162051e-50 | -8.615850e-47 |
Msa0305190 | Msa0440670 | 0.802687 | 4.983963e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
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Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0440670 | MtrunA17_Chr3g0081941 | 75.000 | 40 | 10 | 0 | 38 | 77 | 1232 | 1271 | 2.07e-12 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Find 12 sgRNAs with CRISPR-Local
Find 486 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGCGGTAACTTCTTTGTTTC+CGG | 0.205095 | 3_3:-8178398 | None:intergenic |
TTTGTTTCCGGATCTATATT+CGG | 0.231493 | 3_3:-8178386 | None:intergenic |
GCTTTCTTATAGTAGTATTA+AGG | 0.320427 | 3_3:-8185854 | None:intergenic |
CTTTCTCTCATGTAATCTTA+AGG | 0.341962 | 3_3:+8185769 | Msa0440670:CDS |
TTTCTCTCATGTAATCTTAA+GGG | 0.385240 | 3_3:+8185770 | Msa0440670:CDS |
TTGTTTCCGGATCTATATTC+GGG | 0.425035 | 3_3:-8178385 | None:intergenic |
AGAATATATTTGAATCAGAA+TGG | 0.492083 | 3_3:+8185807 | Msa0440670:CDS |
GCAATACCCGAATATAGATC+CGG | 0.554479 | 3_3:+8178379 | Msa0440670:CDS |
TGAATCAGAATGGAGATCAA+TGG | 0.558047 | 3_3:+8185817 | Msa0440670:CDS |
TAAGATTTCGACGGTAGCGA+CGG | 0.565247 | 3_3:-8178419 | None:intergenic |
GATTTCGACGGTAGCGACGG+CGG | 0.632756 | 3_3:-8178416 | None:intergenic |
AAGAGAAACTAAGATTTCGA+CGG | 0.643075 | 3_3:-8178428 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATTTAAACAAAATTGTAA+CGG | + | chr3_3:8178461-8178480 | Msa0440670:intron | 10.0% |
!!! | TAACATTTATAGTTATATTT+TGG | + | chr3_3:8178559-8178578 | Msa0440670:intron | 10.0% |
!!! | AACATTTATAGTTATATTTT+GGG | + | chr3_3:8178560-8178579 | Msa0440670:intron | 10.0% |
!!! | ATTTAATTTATATGTAGAAT+TGG | + | chr3_3:8178591-8178610 | Msa0440670:intron | 10.0% |
!! | AAATTGATATTGTTATATAT+TGG | + | chr3_3:8178845-8178864 | Msa0440670:intron | 10.0% |
!! | AATTGATATTGTTATATATT+GGG | + | chr3_3:8178846-8178865 | Msa0440670:intron | 10.0% |
!!! | TATATTTTATTTGTCATTTA+TGG | + | chr3_3:8178905-8178924 | Msa0440670:intron | 10.0% |
!!! | ATATTTTATTTGTCATTTAT+GGG | + | chr3_3:8178906-8178925 | Msa0440670:intron | 10.0% |
!! | ATGAAATATTATATTCATTA+GGG | - | chr3_3:8181261-8181280 | None:intergenic | 10.0% |
!!! | CAACTTGATAATATTAATTT+TGG | + | chr3_3:8178731-8178750 | Msa0440670:intron | 15.0% |
!! | ATAATTGATAAGATAAGAAT+AGG | + | chr3_3:8178805-8178824 | Msa0440670:intron | 15.0% |
!! | ATTGATATTGTTATATATTG+GGG | + | chr3_3:8178847-8178866 | Msa0440670:intron | 15.0% |
!! | ACTAACTTTCAATATTATTA+AGG | + | chr3_3:8179041-8179060 | Msa0440670:intron | 15.0% |
!! | CTAACTTTCAATATTATTAA+GGG | + | chr3_3:8179042-8179061 | Msa0440670:intron | 15.0% |
!!! | ACTTCTTTTAAATCATAAAA+TGG | - | chr3_3:8180883-8180902 | None:intergenic | 15.0% |
!! | CATGAAATATTATATTCATT+AGG | - | chr3_3:8181262-8181281 | None:intergenic | 15.0% |
!!! | TTTTATAGATTTAAATCCAT+AGG | + | chr3_3:8181368-8181387 | Msa0440670:intron | 15.0% |
!! | ATGAAAATAATGATATAAGA+AGG | - | chr3_3:8181737-8181756 | None:intergenic | 15.0% |
!!! | TCTTATATCATTATTTTCAT+AGG | + | chr3_3:8181737-8181756 | Msa0440670:intron | 15.0% |
!! | TAACTACAATTAAAATGATA+GGG | - | chr3_3:8184434-8184453 | None:intergenic | 15.0% |
!!! | TGTCCTTATTTTTTTAAATT+TGG | + | chr3_3:8185701-8185720 | Msa0440670:intron | 15.0% |
!! | AAACTAGCTATATTAATAGT+AGG | + | chr3_3:8178236-8178255 | Msa0440670:intron | 20.0% |
!! | ATTTCATATGATAACCTAAT+AGG | + | chr3_3:8178354-8178373 | Msa0440670:intron | 20.0% |
!!! | TAAAACATATAAAAAGTGCA+GGG | - | chr3_3:8178529-8178548 | None:intergenic | 20.0% |
!!! | ATAAAACATATAAAAAGTGC+AGG | - | chr3_3:8178530-8178549 | None:intergenic | 20.0% |
!!! | TATAGTTATATTTTGGGATT+TGG | + | chr3_3:8178566-8178585 | Msa0440670:intron | 20.0% |
!!! | ATAGTTATATTTTGGGATTT+GGG | + | chr3_3:8178567-8178586 | Msa0440670:intron | 20.0% |
!!! | TAGAAGTAATAAAGTGATTT+TGG | + | chr3_3:8178648-8178667 | Msa0440670:intron | 20.0% |
!!! | AGAAGTAATAAAGTGATTTT+GGG | + | chr3_3:8178649-8178668 | Msa0440670:intron | 20.0% |
!!! | ATCAATCTAACATATTTTCA+TGG | - | chr3_3:8179156-8179175 | None:intergenic | 20.0% |
!!! | AGTTGTAATTTTTAGATTTC+TGG | + | chr3_3:8179261-8179280 | Msa0440670:intron | 20.0% |
!! | ATGTAAATGATGATTTATGT+TGG | + | chr3_3:8180533-8180552 | Msa0440670:intron | 20.0% |
!!! | TTTTATGATGTTGAATTTGA+AGG | + | chr3_3:8180843-8180862 | Msa0440670:intron | 20.0% |
!!! | TTATGATGAAATTTTCAAGT+TGG | + | chr3_3:8180938-8180957 | Msa0440670:intron | 20.0% |
!!! | TATGATGAAATTTTCAAGTT+GGG | + | chr3_3:8180939-8180958 | Msa0440670:intron | 20.0% |
!!! | ACAATGTTGGTTAATTAAAA+CGG | + | chr3_3:8180975-8180994 | Msa0440670:intron | 20.0% |
!! | TATTATATTCATTAGGGTTT+AGG | - | chr3_3:8181255-8181274 | None:intergenic | 20.0% |
!! | AAATTATGAAATAGTACCTA+TGG | - | chr3_3:8181387-8181406 | None:intergenic | 20.0% |
!! | TATGATTAACCTTATTAGAA+AGG | + | chr3_3:8181615-8181634 | Msa0440670:intron | 20.0% |
!! | AAGAATATTCCTTTCTAATA+AGG | - | chr3_3:8181627-8181646 | None:intergenic | 20.0% |
!! | TTTACTATATAACTGATGTA+AGG | + | chr3_3:8181677-8181696 | Msa0440670:intron | 20.0% |
!! | TTACTATATAACTGATGTAA+GGG | + | chr3_3:8181678-8181697 | Msa0440670:intron | 20.0% |
!!! | TATATCATTATTTTCATAGG+AGG | + | chr3_3:8181740-8181759 | Msa0440670:intron | 20.0% |
!! | AATCTGTTAAAACAACAATA+TGG | - | chr3_3:8182149-8182168 | None:intergenic | 20.0% |
!! | TCATACTGTGAATTAAAAAA+TGG | + | chr3_3:8182230-8182249 | Msa0440670:intron | 20.0% |
!!! | CATTTGAAGTAAGAATAAAA+AGG | - | chr3_3:8182330-8182349 | None:intergenic | 20.0% |
!! | TTAATATATGTACTTGTATG+TGG | + | chr3_3:8182369-8182388 | Msa0440670:intron | 20.0% |
!! | ACATCTCATATGTATATTTA+AGG | + | chr3_3:8182443-8182462 | Msa0440670:intron | 20.0% |
!!! | TTGTTTGATGATATTAACAT+TGG | - | chr3_3:8182475-8182494 | None:intergenic | 20.0% |
!!! | CTTTATAGTTTCTTTTGATT+TGG | - | chr3_3:8183266-8183285 | None:intergenic | 20.0% |
!! | TACTATTAGTGAGAATAATT+GGG | - | chr3_3:8183458-8183477 | None:intergenic | 20.0% |
!! | AATTATTCTCACTAATAGTA+GGG | + | chr3_3:8183458-8183477 | Msa0440670:intron | 20.0% |
!! | TTCAATCATTATAACTTCAT+TGG | - | chr3_3:8183688-8183707 | None:intergenic | 20.0% |
!!! | AACTGTTTTTTAGCAAATTT+AGG | + | chr3_3:8183871-8183890 | Msa0440670:intron | 20.0% |
!! | AAGAAAAGGAAAATAAATGA+AGG | - | chr3_3:8184390-8184409 | None:intergenic | 20.0% |
!! | GTAAGATTTATCTAAAGAAA+AGG | - | chr3_3:8184404-8184423 | None:intergenic | 20.0% |
!! | AACTACAATTAAAATGATAG+GGG | - | chr3_3:8184433-8184452 | None:intergenic | 20.0% |
!! | GTAACTACAATTAAAATGAT+AGG | - | chr3_3:8184435-8184454 | None:intergenic | 20.0% |
!!! | CATTTTAATTGTAGTTACTA+AGG | + | chr3_3:8184437-8184456 | Msa0440670:intron | 20.0% |
!! | ACAAAATATTCTATTCTATC+AGG | - | chr3_3:8184468-8184487 | None:intergenic | 20.0% |
!!! | TAAAAGTGACATCATTTTTT+AGG | - | chr3_3:8185208-8185227 | None:intergenic | 20.0% |
!! | AGAATATATTTGAATCAGAA+TGG | + | chr3_3:8185807-8185826 | Msa0440670:CDS | 20.0% |
!!! | GTCCTTAAGTTTTTTAAATT+TGG | + | chr3_3:8185912-8185931 | Msa0440670:CDS | 20.0% |
!! | TGCCAAATTTAAAAAACTTA+AGG | - | chr3_3:8185917-8185936 | None:intergenic | 20.0% |
! | AGTCAAAAATCTATGAATTC+AGG | + | chr3_3:8178497-8178516 | Msa0440670:intron | 25.0% |
!! | GAAGTAATAAAGTGATTTTG+GGG | + | chr3_3:8178650-8178669 | Msa0440670:intron | 25.0% |
! | CGAACTATCATTATTTGTTT+AGG | + | chr3_3:8178761-8178780 | Msa0440670:intron | 25.0% |
! | AAAATATACGAACACAAATC+AGG | - | chr3_3:8178893-8178912 | None:intergenic | 25.0% |
! | AGAATGAATTTAGCATGATT+AGG | + | chr3_3:8179076-8179095 | Msa0440670:intron | 25.0% |
! | TAGCATCTAATTATCATCTT+AGG | - | chr3_3:8179209-8179228 | None:intergenic | 25.0% |
! | GATGATAATTAGATGCTATT+TGG | + | chr3_3:8179211-8179230 | Msa0440670:intron | 25.0% |
! | AACTCTCTTTCTTACTTATA+AGG | - | chr3_3:8179570-8179589 | None:intergenic | 25.0% |
! | ACTTATACAACTCATAATCA+TGG | - | chr3_3:8179723-8179742 | None:intergenic | 25.0% |
! | CAACATAAATGAGCATAATT+AGG | - | chr3_3:8180008-8180027 | None:intergenic | 25.0% |
! | ATTATGCTCATTTATGTTGT+TGG | + | chr3_3:8180009-8180028 | Msa0440670:intron | 25.0% |
! | GATGTCTTATGATGATTATT+AGG | + | chr3_3:8180203-8180222 | Msa0440670:intron | 25.0% |
! | ATAATCAAACATCATCATCA+GGG | - | chr3_3:8180263-8180282 | None:intergenic | 25.0% |
! | AGTTCAACATTTAAAAGTCT+TGG | - | chr3_3:8180798-8180817 | None:intergenic | 25.0% |
!!! | AAATTTTCAAGTTGGGAAAA+TGG | + | chr3_3:8180946-8180965 | Msa0440670:intron | 25.0% |
!!! | AATTTTCAAGTTGGGAAAAT+GGG | + | chr3_3:8180947-8180966 | Msa0440670:intron | 25.0% |
! | GTTAATTAAAACGGAATTGA+GGG | + | chr3_3:8180984-8181003 | Msa0440670:intron | 25.0% |
! | TTAATTAAAACGGAATTGAG+GGG | + | chr3_3:8180985-8181004 | Msa0440670:intron | 25.0% |
!!! | GCACAAACTTAAGTTTTATA+TGG | + | chr3_3:8181897-8181916 | Msa0440670:intron | 25.0% |
!!! | ACTTAAGTTTTATATGGATG+TGG | + | chr3_3:8181903-8181922 | Msa0440670:intron | 25.0% |
!!! | TAAGAAGTTTTATATGGATG+TGG | + | chr3_3:8181937-8181956 | Msa0440670:intron | 25.0% |
! | TGTGAATTAAAAAATGGTCT+TGG | + | chr3_3:8182236-8182255 | Msa0440670:intron | 25.0% |
! | GTGAATTAAAAAATGGTCTT+GGG | + | chr3_3:8182237-8182256 | Msa0440670:intron | 25.0% |
! | ATAAAAAGGCCTTTAACATT+GGG | - | chr3_3:8182316-8182335 | None:intergenic | 25.0% |
! | AATAAAAAGGCCTTTAACAT+TGG | - | chr3_3:8182317-8182336 | None:intergenic | 25.0% |
! | TTATTCTTACTTCAAATGAC+AGG | + | chr3_3:8182332-8182351 | Msa0440670:intron | 25.0% |
! | TCAACACAACATAATTTAGA+AGG | + | chr3_3:8182548-8182567 | Msa0440670:intron | 25.0% |
!!! | AATTTAGAAGGTATTCCATT+TGG | + | chr3_3:8182560-8182579 | Msa0440670:intron | 25.0% |
!!! | ATTTAGAAGGTATTCCATTT+GGG | + | chr3_3:8182561-8182580 | Msa0440670:intron | 25.0% |
!!! | CAGAATTTTATTTACCCAAA+TGG | - | chr3_3:8182578-8182597 | None:intergenic | 25.0% |
!! | TACTGGTTAGTGTTAATTAA+TGG | - | chr3_3:8182728-8182747 | None:intergenic | 25.0% |
! | TACTAATTTCCAAAATGTTC+CGG | - | chr3_3:8182933-8182952 | None:intergenic | 25.0% |
! | CTACTATTAGTGAGAATAAT+TGG | - | chr3_3:8183459-8183478 | None:intergenic | 25.0% |
! | CAATTATTCTCACTAATAGT+AGG | + | chr3_3:8183457-8183476 | Msa0440670:intron | 25.0% |
! | TTCTTCAAAGGATAATTACA+AGG | - | chr3_3:8183515-8183534 | None:intergenic | 25.0% |
!! | TCCTTGAATTTTCTAATAGA+AGG | + | chr3_3:8183601-8183620 | Msa0440670:intron | 25.0% |
!! | CCTTGAATTTTCTAATAGAA+GGG | + | chr3_3:8183602-8183621 | Msa0440670:intron | 25.0% |
! | TGTATTGCAGATGATTATAA+AGG | - | chr3_3:8183646-8183665 | None:intergenic | 25.0% |
! | TATAATCATCTGCAATACAT+AGG | + | chr3_3:8183647-8183666 | Msa0440670:intron | 25.0% |
! | AAGTTATAATGATTGAACCA+AGG | + | chr3_3:8183691-8183710 | Msa0440670:intron | 25.0% |
! | CTCTATATATTGCAATTGTT+AGG | - | chr3_3:8184117-8184136 | None:intergenic | 25.0% |
! | ATTGTTAAAAAACGCTACTT+TGG | - | chr3_3:8184143-8184162 | None:intergenic | 25.0% |
! | TCTATTTACATGAATGAGAA+AGG | + | chr3_3:8184573-8184592 | Msa0440670:intron | 25.0% |
! | AGCAATTCTATTATCTTACA+TGG | + | chr3_3:8184598-8184617 | Msa0440670:intron | 25.0% |
!!! | TTATTTTGAAGTGTTTTGCA+AGG | + | chr3_3:8184642-8184661 | Msa0440670:intron | 25.0% |
! | TGGATAAGTTAAATATCTTG+CGG | - | chr3_3:8185026-8185045 | None:intergenic | 25.0% |
!!! | AGTTTTGGATTTTTAGGTAT+GGG | - | chr3_3:8185075-8185094 | None:intergenic | 25.0% |
!!! | TAGTTTTGGATTTTTAGGTA+TGG | - | chr3_3:8185076-8185095 | None:intergenic | 25.0% |
!!! | AAGGTTAGTTTTGGATTTTT+AGG | - | chr3_3:8185081-8185100 | None:intergenic | 25.0% |
! | ATCAAATTCATATTGCATTG+CGG | - | chr3_3:8185124-8185143 | None:intergenic | 25.0% |
! | CTCTTATTAGAAATAAGATG+TGG | + | chr3_3:8185145-8185164 | Msa0440670:intron | 25.0% |
!!! | TGACATCATTTTTTAGGTAT+GGG | - | chr3_3:8185202-8185221 | None:intergenic | 25.0% |
! | TGTAGAGGAAATTATTGAAA+AGG | + | chr3_3:8185636-8185655 | Msa0440670:intron | 25.0% |
! | GGGCCAAATTTAAAAAAATA+AGG | - | chr3_3:8185707-8185726 | None:intergenic | 25.0% |
!!! | ATTCTAAAGGTATCTAAGTT+GGG | - | chr3_3:8185727-8185746 | None:intergenic | 25.0% |
!!! | AATTCTAAAGGTATCTAAGT+TGG | - | chr3_3:8185728-8185747 | None:intergenic | 25.0% |
! | TAGTCAAAATGGAATTCTAA+AGG | - | chr3_3:8185740-8185759 | None:intergenic | 25.0% |
!! | AGTCTAAAGTTTAGTCAAAA+TGG | - | chr3_3:8185751-8185770 | None:intergenic | 25.0% |
! | TTTCTCTCATGTAATCTTAA+GGG | + | chr3_3:8185770-8185789 | Msa0440670:CDS | 25.0% |
! | GCTTTCTTATAGTAGTATTA+AGG | - | chr3_3:8185857-8185876 | None:intergenic | 25.0% |
AGGTGAAGAGAATAAATAAG+TGG | + | chr3_3:8178256-8178275 | Msa0440670:intron | 30.0% | |
GGTGAAGAGAATAAATAAGT+GGG | + | chr3_3:8178257-8178276 | Msa0440670:intron | 30.0% | |
GTTCACATCTTATGTTAACT+GGG | - | chr3_3:8178301-8178320 | None:intergenic | 30.0% | |
AGTTCACATCTTATGTTAAC+TGG | - | chr3_3:8178302-8178321 | None:intergenic | 30.0% | |
GAAATATATACACACACACT+AGG | - | chr3_3:8178339-8178358 | None:intergenic | 30.0% | |
TTTGTTTCCGGATCTATATT+CGG | - | chr3_3:8178389-8178408 | None:intergenic | 30.0% | |
AAGAGAAACTAAGATTTCGA+CGG | - | chr3_3:8178431-8178450 | None:intergenic | 30.0% | |
TTTGGTGAGAATTGAGAATT+AGG | + | chr3_3:8179105-8179124 | Msa0440670:intron | 30.0% | |
CATGGTTCAATCATCAAAAT+CGG | - | chr3_3:8179138-8179157 | None:intergenic | 30.0% | |
ATCATCTTAGGCAATATCTA+AGG | - | chr3_3:8179197-8179216 | None:intergenic | 30.0% | |
GTTGAAAGAATCATGAAGAT+AGG | + | chr3_3:8179233-8179252 | Msa0440670:intron | 30.0% | |
AGTAAGAAAGAGAGTTGTTT+AGG | + | chr3_3:8179574-8179593 | Msa0440670:intron | 30.0% | |
ATTGCATGCTCATTAAAGTT+GGG | + | chr3_3:8179782-8179801 | Msa0440670:intron | 30.0% | |
TAAGAGTTGTATTGTCAAGT+TGG | + | chr3_3:8180146-8180165 | Msa0440670:intron | 30.0% | |
AAGAGTTGTATTGTCAAGTT+GGG | + | chr3_3:8180147-8180166 | Msa0440670:intron | 30.0% | |
CATAATCAAACATCATCATC+AGG | - | chr3_3:8180264-8180283 | None:intergenic | 30.0% | |
GACTTATGAGATTTCTGATA+AGG | + | chr3_3:8180764-8180783 | Msa0440670:intron | 30.0% | |
AAAATCTTAAACTGTTGCAG+CGG | - | chr3_3:8180826-8180845 | None:intergenic | 30.0% | |
!!! | CAGAGTATTTTGATCACAAA+CGG | - | chr3_3:8180916-8180935 | None:intergenic | 30.0% |
!!! | ATTTTCAAGTTGGGAAAATG+GGG | + | chr3_3:8180948-8180967 | Msa0440670:intron | 30.0% |
GGTTAATTAAAACGGAATTG+AGG | + | chr3_3:8180983-8181002 | Msa0440670:intron | 30.0% | |
TATATACATGTGTTAGTCGT+AGG | + | chr3_3:8181020-8181039 | Msa0440670:intron | 30.0% | |
ATCATGTGTTTGTGTATATC+AGG | + | chr3_3:8181342-8181361 | Msa0440670:intron | 30.0% | |
GTAAATGCAGTAAACAACAA+AGG | - | chr3_3:8181662-8181681 | None:intergenic | 30.0% | |
! | TTTAGGTTTCACTGAATTCA+TGG | - | chr3_3:8181774-8181793 | None:intergenic | 30.0% |
TCATTGCAGTCTTACATATT+TGG | - | chr3_3:8181872-8181891 | None:intergenic | 30.0% | |
!! | AAGCGGTAAGAAGTTTTATA+TGG | + | chr3_3:8181931-8181950 | Msa0440670:intron | 30.0% |
! | AGAGAAAAAATGGAGTTGAT+GGG | + | chr3_3:8182042-8182061 | Msa0440670:intron | 30.0% |
ACATTCTTTCCCAATGTTAA+AGG | + | chr3_3:8182304-8182323 | Msa0440670:intron | 30.0% | |
ATAGGATCAATGTAACTGAA+AGG | - | chr3_3:8182413-8182432 | None:intergenic | 30.0% | |
TCAAACAAGTGAAATTTGTC+TGG | + | chr3_3:8182487-8182506 | Msa0440670:intron | 30.0% | |
! | GTTTCAAATGCATTTTCCTT+TGG | - | chr3_3:8182518-8182537 | None:intergenic | 30.0% |
TTCTTAAGATGCGAAATCAA+TGG | + | chr3_3:8182701-8182720 | Msa0440670:intron | 30.0% | |
!!! | TTGTGTACTTGTTTTGATGA+CGG | - | chr3_3:8182757-8182776 | None:intergenic | 30.0% |
ATCACCTTATTCTCTATGTT+AGG | - | chr3_3:8182888-8182907 | None:intergenic | 30.0% | |
TTGGGATCGTAAAGAATTAA+AGG | + | chr3_3:8182971-8182990 | Msa0440670:intron | 30.0% | |
! | AAGTGTTGTTGAAGTTCATA+GGG | - | chr3_3:8183006-8183025 | None:intergenic | 30.0% |
!! | CAAGGCAGTATATATTTTTG+AGG | - | chr3_3:8183035-8183054 | None:intergenic | 30.0% |
CTCAAAAATATATACTGCCT+TGG | + | chr3_3:8183033-8183052 | Msa0440670:intron | 30.0% | |
! | GTATGGATTATGAAGGAATA+TGG | - | chr3_3:8183130-8183149 | None:intergenic | 30.0% |
! | TGATGATGTATGGATTATGA+AGG | - | chr3_3:8183137-8183156 | None:intergenic | 30.0% |
! | AAGATTTTACCCCCTAATTT+TGG | - | chr3_3:8183226-8183245 | None:intergenic | 30.0% |
TCAAAAGAAACTATAAAGCG+TGG | + | chr3_3:8183268-8183287 | Msa0440670:intron | 30.0% | |
GAAGTAAAGGTTCATACTTT+GGG | - | chr3_3:8183424-8183443 | None:intergenic | 30.0% | |
TGAAGTAAAGGTTCATACTT+TGG | - | chr3_3:8183425-8183444 | None:intergenic | 30.0% | |
GGTCAACAAAATTGAAGTAA+AGG | - | chr3_3:8183437-8183456 | None:intergenic | 30.0% | |
AAAGGATAATTACAAGGTTG+TGG | - | chr3_3:8183509-8183528 | None:intergenic | 30.0% | |
TGAACATGAGTAATCACATT+TGG | + | chr3_3:8183559-8183578 | Msa0440670:intron | 30.0% | |
CCCTTCTATTAGAAAATTCA+AGG | - | chr3_3:8183605-8183624 | None:intergenic | 30.0% | |
!!! | TTTTTTTTAAGGCCCAAAGA+AGG | + | chr3_3:8184211-8184230 | Msa0440670:intron | 30.0% |
TCTTGATACTAACCTTCTTT+GGG | - | chr3_3:8184226-8184245 | None:intergenic | 30.0% | |
ATCTTGATACTAACCTTCTT+TGG | - | chr3_3:8184227-8184246 | None:intergenic | 30.0% | |
TGTGCAGATCATGTTATTAA+TGG | + | chr3_3:8184743-8184762 | Msa0440670:intron | 30.0% | |
ATAATTCCAATGGTAGATCT+TGG | + | chr3_3:8184938-8184957 | Msa0440670:intron | 30.0% | |
TCTGATACCATGTTGAAATT+TGG | + | chr3_3:8184967-8184986 | Msa0440670:intron | 30.0% | |
CTGATACCATGTTGAAATTT+GGG | + | chr3_3:8184968-8184987 | Msa0440670:intron | 30.0% | |
TGATACCATGTTGAAATTTG+GGG | + | chr3_3:8184969-8184988 | Msa0440670:intron | 30.0% | |
GATAAGTTAAATATCTTGCG+GGG | - | chr3_3:8185024-8185043 | None:intergenic | 30.0% | |
GGATAAGTTAAATATCTTGC+GGG | - | chr3_3:8185025-8185044 | None:intergenic | 30.0% | |
!!! | GTGACATCATTTTTTAGGTA+TGG | - | chr3_3:8185203-8185222 | None:intergenic | 30.0% |
CGTGTCAAATAATTAGAATG+AGG | + | chr3_3:8185481-8185500 | Msa0440670:intron | 30.0% | |
AACACAAACATATCAGAATC+TGG | - | chr3_3:8185535-8185554 | None:intergenic | 30.0% | |
AGATTCTGATATGTTTGTGT+TGG | + | chr3_3:8185534-8185553 | Msa0440670:intron | 30.0% | |
TATTGAAAAGGAACAAAGAG+AGG | + | chr3_3:8185648-8185667 | Msa0440670:intron | 30.0% | |
CTTTCTCTCATGTAATCTTA+AGG | + | chr3_3:8185769-8185788 | Msa0440670:CDS | 30.0% | |
TTGTTTCCGGATCTATATTC+GGG | - | chr3_3:8178388-8178407 | None:intergenic | 35.0% | |
ATCAAATTTGTGTAGCGTGA+TGG | + | chr3_3:8178692-8178711 | Msa0440670:intron | 35.0% | |
TATGTGAAAGCTTCAAATCC+AGG | + | chr3_3:8179008-8179027 | Msa0440670:intron | 35.0% | |
AAAGCTTCAAATCCAGGTAA+GGG | + | chr3_3:8179014-8179033 | Msa0440670:intron | 35.0% | |
!!! | AGCATGATTAGGTTGAGTTT+TGG | + | chr3_3:8179087-8179106 | Msa0440670:intron | 35.0% |
ATGTTGTCTAAGTTGTTGGA+AGG | + | chr3_3:8179751-8179770 | Msa0440670:intron | 35.0% | |
CAACTTTAATGAGCATGCAA+TGG | - | chr3_3:8179783-8179802 | None:intergenic | 35.0% | |
CATTGCATGCTCATTAAAGT+TGG | + | chr3_3:8179781-8179800 | Msa0440670:intron | 35.0% | |
TTGCATGCTCATTAAAGTTG+GGG | + | chr3_3:8179783-8179802 | Msa0440670:intron | 35.0% | |
CCTTTGTGCTCATTAAAGTT+GGG | + | chr3_3:8179861-8179880 | Msa0440670:intron | 35.0% | |
CTTTGTGCTCATTAAAGTTG+GGG | + | chr3_3:8179862-8179881 | Msa0440670:intron | 35.0% | |
TTTGTGCTCATTAAAGTTGG+GGG | + | chr3_3:8179863-8179882 | Msa0440670:intron | 35.0% | |
CCTTTGTGCTCATTAAAGTT+GGG | + | chr3_3:8179861-8179880 | Msa0440670:intron | 35.0% | |
CTTTGTGCTCATTAAAGTTG+GGG | + | chr3_3:8179862-8179881 | Msa0440670:intron | 35.0% | |
TTTGTGCTCATTAAAGTTGG+GGG | + | chr3_3:8179863-8179882 | Msa0440670:intron | 35.0% | |
! | AAAATGGGGTGTTACAATGT+TGG | + | chr3_3:8180962-8180981 | Msa0440670:intron | 35.0% |
! | AGAAATTTTGTGTAGGCTAC+CGG | - | chr3_3:8181164-8181183 | None:intergenic | 35.0% |
GTTACTGAAATTGCATAGAG+CGG | - | chr3_3:8181285-8181304 | None:intergenic | 35.0% | |
!! | AGAGCTTTAGACTCAAATAG+CGG | + | chr3_3:8181481-8181500 | Msa0440670:intron | 35.0% |
! | TATCATCGACTGATACGTTT+AGG | - | chr3_3:8181791-8181810 | None:intergenic | 35.0% |
TGATAATTCCATTGCGTGTT+TGG | + | chr3_3:8181806-8181825 | Msa0440670:intron | 35.0% | |
GATAATTCCATTGCGTGTTT+GGG | + | chr3_3:8181807-8181826 | Msa0440670:intron | 35.0% | |
TAGTCGTAGCAGAGAAAAAA+TGG | + | chr3_3:8182032-8182051 | Msa0440670:intron | 35.0% | |
CAGAGAAAAAATGGAGTTGA+TGG | + | chr3_3:8182041-8182060 | Msa0440670:intron | 35.0% | |
GAACATGTTTGGTTAATTGC+TGG | + | chr3_3:8182064-8182083 | Msa0440670:intron | 35.0% | |
! | TGCTGCTATTTGTCACTAAA+TGG | - | chr3_3:8182280-8182299 | None:intergenic | 35.0% |
!! | TGAGATGTGTGTTGATTGAT+AGG | - | chr3_3:8182431-8182450 | None:intergenic | 35.0% |
!! | TTTGATGACGGGTTATTTAC+TGG | - | chr3_3:8182745-8182764 | None:intergenic | 35.0% |
!!! | TGTGTACTTGTTTTGATGAC+GGG | - | chr3_3:8182756-8182775 | None:intergenic | 35.0% |
ACGTCCTAACATAGAGAATA+AGG | + | chr3_3:8182881-8182900 | Msa0440670:intron | 35.0% | |
AAACTTTCAACGCATACTTC+CGG | + | chr3_3:8182911-8182930 | Msa0440670:intron | 35.0% | |
! | AGACTTCAAAGTATCTCTCT+TGG | + | chr3_3:8182952-8182971 | Msa0440670:intron | 35.0% |
! | GACTTCAAAGTATCTCTCTT+GGG | + | chr3_3:8182953-8182972 | Msa0440670:intron | 35.0% |
! | AGTGTTGTTGAAGTTCATAG+GGG | - | chr3_3:8183005-8183024 | None:intergenic | 35.0% |
! | CAAGTGTTGTTGAAGTTCAT+AGG | - | chr3_3:8183007-8183026 | None:intergenic | 35.0% |
ACAATTTAGTCCAAGACTCT+TGG | + | chr3_3:8183101-8183120 | Msa0440670:intron | 35.0% | |
AATATGGAAACCAAGAGTCT+TGG | - | chr3_3:8183114-8183133 | None:intergenic | 35.0% | |
! | TTTTACCCCCTAATTTTGGA+GGG | - | chr3_3:8183222-8183241 | None:intergenic | 35.0% |
! | ATTTTACCCCCTAATTTTGG+AGG | - | chr3_3:8183223-8183242 | None:intergenic | 35.0% |
ACATTTGCAGAACGATTCTT+TGG | + | chr3_3:8183291-8183310 | Msa0440670:intron | 35.0% | |
!! | ATACTTTGGGTACTGGTATT+TGG | - | chr3_3:8183411-8183430 | None:intergenic | 35.0% |
CTTCGGTTATGATTCTTCAA+AGG | - | chr3_3:8183527-8183546 | None:intergenic | 35.0% | |
! | ATAAAGGCTTGGTTATACTG+TGG | - | chr3_3:8183630-8183649 | None:intergenic | 35.0% |
TGCAGATGATTATAAAGGCT+TGG | - | chr3_3:8183641-8183660 | None:intergenic | 35.0% | |
TAATCTCCATCGAAACTGTT+AGG | + | chr3_3:8183715-8183734 | Msa0440670:intron | 35.0% | |
TATTCTCCTAACAGTTTCGA+TGG | - | chr3_3:8183724-8183743 | None:intergenic | 35.0% | |
!! | ATTTCTGGAATGACATCGAA+AGG | + | chr3_3:8183970-8183989 | Msa0440670:intron | 35.0% |
GATGGAAATTATTTCCTCTG+CGG | + | chr3_3:8184050-8184069 | Msa0440670:intron | 35.0% | |
AGATACACAAACAGACACTT+CGG | - | chr3_3:8184170-8184189 | None:intergenic | 35.0% | |
TCTTGTAAAACCAGCTTGTA+AGG | + | chr3_3:8184840-8184859 | Msa0440670:intron | 35.0% | |
GTGGCAATGAATAATTCCAA+TGG | + | chr3_3:8184928-8184947 | Msa0440670:intron | 35.0% | |
! | TGCATTGCGGATTTTCAATT+CGG | - | chr3_3:8185111-8185130 | None:intergenic | 35.0% |
!!! | TTTTTTAGGTATGGGAGAGA+CGG | - | chr3_3:8185194-8185213 | None:intergenic | 35.0% |
CACAAAAAAATGGAAGGACT+TGG | - | chr3_3:8185569-8185588 | None:intergenic | 35.0% | |
!!! | CAAGTCCTTCCATTTTTTTG+TGG | + | chr3_3:8185567-8185586 | Msa0440670:intron | 35.0% |
GTTTGCCACAAAAAAATGGA+AGG | - | chr3_3:8185575-8185594 | None:intergenic | 35.0% | |
GATCGTTTGCCACAAAAAAA+TGG | - | chr3_3:8185579-8185598 | None:intergenic | 35.0% | |
TGAATCAGAATGGAGATCAA+TGG | + | chr3_3:8185817-8185836 | Msa0440670:CDS | 35.0% | |
GCAATACCCGAATATAGATC+CGG | + | chr3_3:8178379-8178398 | Msa0440670:CDS | 40.0% | |
!! | ATTTGTGTAGCGTGATGGAT+AGG | + | chr3_3:8178697-8178716 | Msa0440670:intron | 40.0% |
! | AACGAGCGTCTCTTTTATGT+CGG | - | chr3_3:8178946-8178965 | None:intergenic | 40.0% |
GAAAGCTTCAAATCCAGGTA+AGG | + | chr3_3:8179013-8179032 | Msa0440670:intron | 40.0% | |
! | GATCGCATCGGAACAATTTT+GGG | - | chr3_3:8179521-8179540 | None:intergenic | 40.0% |
TGTCTTGAAGTTGCATGAGT+CGG | + | chr3_3:8179669-8179688 | Msa0440670:intron | 40.0% | |
CACGATGTTGTCTAAGTTGT+TGG | + | chr3_3:8179747-8179766 | Msa0440670:intron | 40.0% | |
TGCATGCTCATTAAAGTTGG+GGG | + | chr3_3:8179784-8179803 | Msa0440670:intron | 40.0% | |
TCATTAAAGTTGGGGGCTTT+AGG | + | chr3_3:8179791-8179810 | Msa0440670:intron | 40.0% | |
! | AGCCTTGTGCTCATTAAAGT+TGG | + | chr3_3:8179820-8179839 | Msa0440670:intron | 40.0% |
GCCTTGTGCTCATTAAAGTT+GGG | + | chr3_3:8179821-8179840 | Msa0440670:intron | 40.0% | |
CCTTGTGCTCATTAAAGTTG+GGG | + | chr3_3:8179822-8179841 | Msa0440670:intron | 40.0% | |
CTTGTGCTCATTAAAGTTGG+GGG | + | chr3_3:8179823-8179842 | Msa0440670:intron | 40.0% | |
TCATTAAAGTTGGGGGCTTT+AGG | + | chr3_3:8179791-8179810 | Msa0440670:intron | 40.0% | |
GCCTTTGTGCTCATTAAAGT+TGG | + | chr3_3:8179860-8179879 | Msa0440670:intron | 40.0% | |
CCCAACTTTAATGAGCACAA+AGG | - | chr3_3:8179824-8179843 | None:intergenic | 40.0% | |
TCATTAAAGTTGGGGGCTTT+AGG | + | chr3_3:8179791-8179810 | Msa0440670:intron | 40.0% | |
CCTTTGTGCTCGTTAAAGTT+GGG | + | chr3_3:8179901-8179920 | Msa0440670:intron | 40.0% | |
CTTTGTGCTCGTTAAAGTTG+GGG | + | chr3_3:8179902-8179921 | Msa0440670:intron | 40.0% | |
TTTGTGCTCGTTAAAGTTGG+GGG | + | chr3_3:8179903-8179922 | Msa0440670:intron | 40.0% | |
TCGTTAAAGTTGGGGGATTT+AGG | + | chr3_3:8179910-8179929 | Msa0440670:intron | 40.0% | |
GCCTTTGTGCTCATTAAAGT+TGG | + | chr3_3:8179860-8179879 | Msa0440670:intron | 40.0% | |
CCCAACTTTAATGAGCACAA+AGG | - | chr3_3:8179824-8179843 | None:intergenic | 40.0% | |
TCATTAAAGTTGGGGGCTTT+AGG | + | chr3_3:8179791-8179810 | Msa0440670:intron | 40.0% | |
TGCTCATTTATGTTGTTGGC+TGG | + | chr3_3:8180013-8180032 | Msa0440670:intron | 40.0% | |
TAACATCGTACATCTGCATG+TGG | - | chr3_3:8180041-8180060 | None:intergenic | 40.0% | |
TAATACCTGCACATTACCCA+CGG | - | chr3_3:8180636-8180655 | None:intergenic | 40.0% | |
GTGCAGGTATTAAAGACTAG+AGG | + | chr3_3:8180644-8180663 | Msa0440670:intron | 40.0% | |
CTAGGTGCTCTGATATGTAA+CGG | + | chr3_3:8180696-8180715 | Msa0440670:intron | 40.0% | |
TAGGTGCTCTGATATGTAAC+GGG | + | chr3_3:8180697-8180716 | Msa0440670:intron | 40.0% | |
ATTTAAAAGTCTTGGCACGC+AGG | - | chr3_3:8180790-8180809 | None:intergenic | 40.0% | |
TAGGTGCTTCTTGACGAAAT+TGG | + | chr3_3:8181081-8181100 | Msa0440670:intron | 40.0% | |
AGGTGCTTCTTGACGAAATT+GGG | + | chr3_3:8181082-8181101 | Msa0440670:intron | 40.0% | |
GGTAGCCTACACAAAATTTC+TGG | + | chr3_3:8181163-8181182 | Msa0440670:intron | 40.0% | |
! | TCAGGCCAGAAATTTTGTGT+AGG | - | chr3_3:8181171-8181190 | None:intergenic | 40.0% |
GTTTAGGCTAAAGCCACAAT+CGG | - | chr3_3:8181239-8181258 | None:intergenic | 40.0% | |
AACAAAGACACACTCAGCTT+CGG | - | chr3_3:8181315-8181334 | None:intergenic | 40.0% | |
! | AGTGTCACTAAAGAGGTATG+TGG | - | chr3_3:8181558-8181577 | None:intergenic | 40.0% |
! | CTTCGTTAGTGTCACTAAAG+AGG | - | chr3_3:8181565-8181584 | None:intergenic | 40.0% |
TCACTGAATTCATGGACAGA+GGG | - | chr3_3:8181766-8181785 | None:intergenic | 40.0% | |
TTCACTGAATTCATGGACAG+AGG | - | chr3_3:8181767-8181786 | None:intergenic | 40.0% | |
TATGATTCCCAAACACGCAA+TGG | - | chr3_3:8181817-8181836 | None:intergenic | 40.0% | |
ATATGGATGTGGAATCGAAG+CGG | + | chr3_3:8181914-8181933 | Msa0440670:intron | 40.0% | |
ATATGGATGTGGAATCGATG+CGG | + | chr3_3:8181948-8181967 | Msa0440670:intron | 40.0% | |
GATGCGGTAAGTATTACGTA+GGG | + | chr3_3:8181964-8181983 | Msa0440670:intron | 40.0% | |
ATGCGGTAAGTATTACGTAG+GGG | + | chr3_3:8181965-8181984 | Msa0440670:intron | 40.0% | |
GTTTGGTTAATTGCTGGTAG+AGG | + | chr3_3:8182070-8182089 | Msa0440670:intron | 40.0% | |
! | CTGAGTGCAGATTGGTTAAT+AGG | + | chr3_3:8182107-8182126 | Msa0440670:intron | 40.0% |
AATTTGTCTGGCACATCCAA+AGG | + | chr3_3:8182499-8182518 | Msa0440670:intron | 40.0% | |
TGTTTACTGTTCCTTACGAG+CGG | - | chr3_3:8183084-8183103 | None:intergenic | 40.0% | |
! | TGACTTCTGGTGATGATGTA+TGG | - | chr3_3:8183147-8183166 | None:intergenic | 40.0% |
ACATCTACCCCTCCAAAATT+AGG | + | chr3_3:8183211-8183230 | Msa0440670:intron | 40.0% | |
CATCTACCCCTCCAAAATTA+GGG | + | chr3_3:8183212-8183231 | Msa0440670:intron | 40.0% | |
ATCTACCCCTCCAAAATTAG+GGG | + | chr3_3:8183213-8183232 | Msa0440670:intron | 40.0% | |
!! | TTTACCCCCTAATTTTGGAG+GGG | - | chr3_3:8183221-8183240 | None:intergenic | 40.0% |
TTGTCAGTGGCACGATTAAT+TGG | - | chr3_3:8183324-8183343 | None:intergenic | 40.0% | |
!!! | ATTCAGGAGTATCCTTTTGG+CGG | - | chr3_3:8183382-8183401 | None:intergenic | 40.0% |
!!! | AGCATTCAGGAGTATCCTTT+TGG | - | chr3_3:8183385-8183404 | None:intergenic | 40.0% |
!! | TGGTATTTGGAGAAGCATTC+AGG | - | chr3_3:8183398-8183417 | None:intergenic | 40.0% |
AAGGTTCATACTTTGGGTAC+TGG | - | chr3_3:8183418-8183437 | None:intergenic | 40.0% | |
TTCTCACTAATAGTAGGGTC+TGG | + | chr3_3:8183463-8183482 | Msa0440670:intron | 40.0% | |
ACTCATGTTCACATGTCGTT+TGG | - | chr3_3:8183550-8183569 | None:intergenic | 40.0% | |
GTTTCGATGGAGATTATCCT+TGG | - | chr3_3:8183711-8183730 | None:intergenic | 40.0% | |
TCTGTGAAAATCGAGTCGAT+TGG | + | chr3_3:8183772-8183791 | Msa0440670:intron | 40.0% | |
CTGTGAAAATCGAGTCGATT+GGG | + | chr3_3:8183773-8183792 | Msa0440670:intron | 40.0% | |
AGTTGAAGCAAGAGTTTCAC+TGG | + | chr3_3:8183934-8183953 | Msa0440670:intron | 40.0% | |
TCATTCCAGAAATTCTGTGC+AGG | - | chr3_3:8183963-8183982 | None:intergenic | 40.0% | |
AATGACATCGAAAGGAAGAG+CGG | + | chr3_3:8183978-8183997 | Msa0440670:intron | 40.0% | |
ACTCTGCATAAACCCACAAT+CGG | - | chr3_3:8184088-8184107 | None:intergenic | 40.0% | |
ATTGTGGGTTTATGCAGAGT+TGG | + | chr3_3:8184088-8184107 | Msa0440670:intron | 40.0% | |
TGCATGATGCCAAAATGACA+AGG | + | chr3_3:8184698-8184717 | Msa0440670:intron | 40.0% | |
GCATGATGCCAAAATGACAA+GGG | + | chr3_3:8184699-8184718 | Msa0440670:intron | 40.0% | |
!! | CTTCTGTTCCCTTGTCATTT+TGG | - | chr3_3:8184710-8184729 | None:intergenic | 40.0% |
! | TGTGTTCCACTTTCCCATTT+TGG | + | chr3_3:8184775-8184794 | Msa0440670:intron | 40.0% |
ATGATGCCAAAATGGGAAAG+TGG | - | chr3_3:8184784-8184803 | None:intergenic | 40.0% | |
GAAGTGCATGATGCCAAAAT+GGG | - | chr3_3:8184694-8184713 | None:intergenic | 40.0% | |
TGAAGTGCATGATGCCAAAA+TGG | - | chr3_3:8184693-8184712 | None:intergenic | 40.0% | |
TAAAACCAGCTTGTAAGGTG+AGG | + | chr3_3:8184845-8184864 | Msa0440670:intron | 40.0% | |
GTCTATCCAAGATCTACCAT+TGG | - | chr3_3:8184947-8184966 | None:intergenic | 40.0% | |
TTAGGCCCCAAATTTCAACA+TGG | - | chr3_3:8184977-8184996 | None:intergenic | 40.0% | |
GTTAAATATCTTGCGGGGTT+TGG | - | chr3_3:8185019-8185038 | None:intergenic | 40.0% | |
!!! | ATTTTTAGGTATGGGAGAGG+CGG | - | chr3_3:8185067-8185086 | None:intergenic | 40.0% |
!!! | TGGATTTTTAGGTATGGGAG+AGG | - | chr3_3:8185070-8185089 | None:intergenic | 40.0% |
! | TTTTCAATTCGGATCGGACA+AGG | - | chr3_3:8185100-8185119 | None:intergenic | 40.0% |
! | TGCGGATTTTCAATTCGGAT+CGG | - | chr3_3:8185106-8185125 | None:intergenic | 40.0% |
!! | GTCTCTGAGATAAGTGATTG+TGG | + | chr3_3:8185613-8185632 | Msa0440670:intron | 40.0% |
GATAAGTGATTGTGGTGTAG+AGG | + | chr3_3:8185621-8185640 | Msa0440670:intron | 40.0% | |
TGAAAAGGAACAAAGAGAGG+AGG | + | chr3_3:8185651-8185670 | Msa0440670:intron | 40.0% | |
! | TTCGGGTATTGCTGCCTATT+AGG | - | chr3_3:8178371-8178390 | None:intergenic | 45.0% |
! | GGCGGTAACTTCTTTGTTTC+CGG | - | chr3_3:8178401-8178420 | None:intergenic | 45.0% |
TAAGATTTCGACGGTAGCGA+CGG | - | chr3_3:8178422-8178441 | None:intergenic | 45.0% | |
! | AAGTTAGTCTCACCCTTACC+TGG | - | chr3_3:8179029-8179048 | None:intergenic | 45.0% |
GTGAGTAACATTGCTCGCAA+TGG | - | chr3_3:8179474-8179493 | None:intergenic | 45.0% | |
! | GGATCGCATCGGAACAATTT+TGG | - | chr3_3:8179522-8179541 | None:intergenic | 45.0% |
!! | ACAGACTTCTAGAGCTTCTG+AGG | - | chr3_3:8179603-8179622 | None:intergenic | 45.0% |
!! | GAAGCTCTAGAAGTCTGTTC+TGG | + | chr3_3:8179605-8179624 | Msa0440670:intron | 45.0% |
TTTAATGAGCACAAGGCTGC+CGG | - | chr3_3:8179818-8179837 | None:intergenic | 45.0% | |
CCCCAACTTTAATGAGCACA+AGG | - | chr3_3:8179825-8179844 | None:intergenic | 45.0% | |
TTAATGAGCACAAAGGCTGC+CGG | - | chr3_3:8179857-8179876 | None:intergenic | 45.0% | |
GCCTTTGTGCTCGTTAAAGT+TGG | + | chr3_3:8179900-8179919 | Msa0440670:intron | 45.0% | |
CCCAACTTTAACGAGCACAA+AGG | - | chr3_3:8179904-8179923 | None:intergenic | 45.0% | |
TTAATGAGCACAAAGGCTGC+CGG | - | chr3_3:8179857-8179876 | None:intergenic | 45.0% | |
TCTTCAACGTGTGAGCACAA+AGG | - | chr3_3:8179984-8180003 | None:intergenic | 45.0% | |
AGGCAACATATACGCAGAAG+GGG | - | chr3_3:8180610-8180629 | None:intergenic | 45.0% | |
GAGGCAACATATACGCAGAA+GGG | - | chr3_3:8180611-8180630 | None:intergenic | 45.0% | |
! | TGCTCTGATATGTAACGGGA+TGG | + | chr3_3:8180701-8180720 | Msa0440670:intron | 45.0% |
! | GCTCTGATATGTAACGGGAT+GGG | + | chr3_3:8180702-8180721 | Msa0440670:intron | 45.0% |
! | CTCTGATATGTAACGGGATG+GGG | + | chr3_3:8180703-8180722 | Msa0440670:intron | 45.0% |
! | TCCATGACTTGCACACACAT+TGG | + | chr3_3:8181119-8181138 | Msa0440670:intron | 45.0% |
TCCAATGTGTGTGCAAGTCA+TGG | - | chr3_3:8181123-8181142 | None:intergenic | 45.0% | |
ACTTGCACACACATTGGAGT+TGG | + | chr3_3:8181125-8181144 | Msa0440670:intron | 45.0% | |
!! | ATTTCTGGCCTGAAGTCGAA+AGG | + | chr3_3:8181178-8181197 | Msa0440670:intron | 45.0% |
! | AAAGGAAGCGTAGGAAGTTG+AGG | + | chr3_3:8181196-8181215 | Msa0440670:intron | 45.0% |
GCTCTTCCTGCTTTCAACTT+GGG | - | chr3_3:8181466-8181485 | None:intergenic | 45.0% | |
AGCTCTTCCTGCTTTCAACT+TGG | - | chr3_3:8181467-8181486 | None:intergenic | 45.0% | |
CGATGCGGTAAGTATTACGT+AGG | + | chr3_3:8181963-8181982 | Msa0440670:intron | 45.0% | |
!! | GGAGTTGATGGGAACATGTT+TGG | + | chr3_3:8182053-8182072 | Msa0440670:intron | 45.0% |
GTTAATTGCTGGTAGAGGCT+TGG | + | chr3_3:8182075-8182094 | Msa0440670:intron | 45.0% | |
!! | AATTGGTGCTGAGTGCAGAT+TGG | + | chr3_3:8182099-8182118 | Msa0440670:intron | 45.0% |
TCTATGTTAGGACGTCGATG+TGG | - | chr3_3:8182876-8182895 | None:intergenic | 45.0% | |
! | CGCATACTTCCGGAACATTT+TGG | + | chr3_3:8182921-8182940 | Msa0440670:intron | 45.0% |
TACTTCTCATGTACGTGCCA+AGG | - | chr3_3:8183053-8183072 | None:intergenic | 45.0% | |
GTTTACTGTTCCTTACGAGC+GGG | - | chr3_3:8183083-8183102 | None:intergenic | 45.0% | |
TCTACCCCTCCAAAATTAGG+GGG | + | chr3_3:8183214-8183233 | Msa0440670:intron | 45.0% | |
! | GTTCACATGTCGTTTGGCTT+CGG | - | chr3_3:8183544-8183563 | None:intergenic | 45.0% |
!! | AACTTCATTGGCTCTTGCGA+CGG | - | chr3_3:8183676-8183695 | None:intergenic | 45.0% |
GATGGGTGTAGAGTAAGAAG+TGG | + | chr3_3:8183824-8183843 | Msa0440670:intron | 45.0% | |
! | AGTTTCATGTGTCGACCACT+CGG | - | chr3_3:8183855-8183874 | None:intergenic | 45.0% |
ATGACATCGAAAGGAAGAGC+GGG | + | chr3_3:8183979-8183998 | Msa0440670:intron | 45.0% | |
TTCCATCAACAACCAGCTCT+CGG | - | chr3_3:8184037-8184056 | None:intergenic | 45.0% | |
TAGATGCCATCTCCGATTGT+GGG | + | chr3_3:8184073-8184092 | Msa0440670:intron | 45.0% | |
CATAAACCCACAATCGGAGA+TGG | - | chr3_3:8184082-8184101 | None:intergenic | 45.0% | |
TTGGCATCATGCACTTCACA+TGG | - | chr3_3:8184794-8184813 | None:intergenic | 45.0% | |
TTGGCATCATGCACTTCACA+TGG | + | chr3_3:8184794-8184813 | Msa0440670:intron | 45.0% | |
GATGGTTCGATTGGTGAGTT+AGG | - | chr3_3:8184995-8185014 | None:intergenic | 45.0% | |
!!! | GGATCGGACAAGGTTAGTTT+TGG | - | chr3_3:8185090-8185109 | None:intergenic | 45.0% |
!! | ATAAACAAATAAATAAAAAT+AGG | - | chr3_3:8181423-8181442 | None:intergenic | 5.0% |
!!! | AAATAATTCTTTTTTTTTTA+AGG | + | chr3_3:8184200-8184219 | Msa0440670:intron | 5.0% |
!!! | ATTATTATTTTTTTTTTTGA+AGG | + | chr3_3:8184277-8184296 | Msa0440670:intron | 5.0% |
!! | AAATTAAATAAAATATTTAG+TGG | - | chr3_3:8185324-8185343 | None:intergenic | 5.0% |
!! | ATTTATGTTAAAATTAAATT+AGG | - | chr3_3:8185389-8185408 | None:intergenic | 5.0% |
GCGAGCGATGAATGTCAGTA+CGG | - | chr3_3:8179287-8179306 | None:intergenic | 50.0% | |
CCATTGCGAGCAAGGACTTA+GGG | + | chr3_3:8179424-8179443 | Msa0440670:intron | 50.0% | |
CGAGCAAAGCGTGCATTATG+GGG | - | chr3_3:8179451-8179470 | None:intergenic | 50.0% | |
GCGAGCAAAGCGTGCATTAT+GGG | - | chr3_3:8179452-8179471 | None:intergenic | 50.0% | |
GTTACTCACCACTGCGAGTT+AGG | + | chr3_3:8179485-8179504 | Msa0440670:intron | 50.0% | |
ACTAACAGCCTAACTCGCAG+TGG | - | chr3_3:8179496-8179515 | None:intergenic | 50.0% | |
CTCATGTCTACACGTGCGAA+AGG | - | chr3_3:8179543-8179562 | None:intergenic | 50.0% | |
TCGCACGTGTAGACATGAGA+TGG | + | chr3_3:8179544-8179563 | Msa0440670:intron | 50.0% | |
TTAATGAGCACAAGGCTGCC+GGG | - | chr3_3:8179817-8179836 | None:intergenic | 50.0% | |
TAATGAGCACAAAGGCTGCC+GGG | - | chr3_3:8179856-8179875 | None:intergenic | 50.0% | |
TTAACGAGCACAAAGGCTGC+CGG | - | chr3_3:8179897-8179916 | None:intergenic | 50.0% | |
AAAGTTGGGGGATTTAGGCC+CGG | + | chr3_3:8179915-8179934 | Msa0440670:intron | 50.0% | |
TAATGAGCACAAAGGCTGCC+GGG | - | chr3_3:8179856-8179875 | None:intergenic | 50.0% | |
CGAGGCAACATATACGCAGA+AGG | - | chr3_3:8180612-8180631 | None:intergenic | 50.0% | |
GTATATGTTGCCTCGACCGT+GGG | + | chr3_3:8180617-8180636 | Msa0440670:intron | 50.0% | |
GGACTCCTCACTTTGTGTCT+AGG | + | chr3_3:8180678-8180697 | Msa0440670:intron | 50.0% | |
GAGCACCTAGACACAAAGTG+AGG | - | chr3_3:8180686-8180705 | None:intergenic | 50.0% | |
! | GTAGGTGTAGCAAGAAGTGC+AGG | + | chr3_3:8181038-8181057 | Msa0440670:intron | 50.0% |
TGCACACACATTGGAGTTGG+AGG | + | chr3_3:8181128-8181147 | Msa0440670:intron | 50.0% | |
ACACACATTGGAGTTGGAGG+AGG | + | chr3_3:8181131-8181150 | Msa0440670:intron | 50.0% | |
AGTTGGAGGAGGAGCTTAAC+CGG | + | chr3_3:8181142-8181161 | Msa0440670:intron | 50.0% | |
CTACGCTTCCTTTCGACTTC+AGG | - | chr3_3:8181189-8181208 | None:intergenic | 50.0% | |
! | CTGAAGTCGAAAGGAAGCGT+AGG | + | chr3_3:8181187-8181206 | Msa0440670:intron | 50.0% |
GTTTGCTCCATCTCCGATTG+TGG | + | chr3_3:8181223-8181242 | Msa0440670:intron | 50.0% | |
GCTAAAGCCACAATCGGAGA+TGG | - | chr3_3:8181233-8181252 | None:intergenic | 50.0% | |
TTACGTAGGGGTCATCTGTG+TGG | + | chr3_3:8181977-8181996 | Msa0440670:intron | 50.0% | |
GCTGGTAGAGGCTTGGAAAT+TGG | + | chr3_3:8182082-8182101 | Msa0440670:intron | 50.0% | |
GTAGTAAGTTCCCGCTCGTA+AGG | + | chr3_3:8183070-8183089 | Msa0440670:intron | 50.0% | |
GATTGCTTGTGCGTGACTTC+TGG | - | chr3_3:8183160-8183179 | None:intergenic | 50.0% | |
! | CGTGCCACTGACAAATTTCC+CGG | + | chr3_3:8183330-8183349 | Msa0440670:intron | 50.0% |
CGATCCGGGAAATTTGTCAG+TGG | - | chr3_3:8183337-8183356 | None:intergenic | 50.0% | |
AATGTACTTGCCCGAGCGAT+GGG | + | chr3_3:8183807-8183826 | Msa0440670:intron | 50.0% | |
TTACTCTACACCCATCGCTC+GGG | - | chr3_3:8183820-8183839 | None:intergenic | 50.0% | |
CTTACTCTACACCCATCGCT+CGG | - | chr3_3:8183821-8183840 | None:intergenic | 50.0% | |
GGGTGTAGAGTAAGAAGTGG+AGG | + | chr3_3:8183827-8183846 | Msa0440670:intron | 50.0% | |
TAAGAAGTGGAGGTTCCGAG+TGG | + | chr3_3:8183837-8183856 | Msa0440670:intron | 50.0% | |
TCCACGACTTGCAGACACAT+CGG | + | chr3_3:8183911-8183930 | Msa0440670:intron | 50.0% | |
GGTAGCCTGCACAGAATTTC+TGG | + | chr3_3:8183955-8183974 | Msa0440670:intron | 50.0% | |
!! | AGCGGCAACTTCTGAAGTGA+AGG | + | chr3_3:8184003-8184022 | Msa0440670:intron | 50.0% |
!! | GGCAACTTCTGAAGTGAAGG+TGG | + | chr3_3:8184006-8184025 | Msa0440670:intron | 50.0% |
AACCGAGAGCTGGTTGTTGA+TGG | + | chr3_3:8184032-8184051 | Msa0440670:intron | 50.0% | |
GTAGATGCCATCTCCGATTG+TGG | + | chr3_3:8184072-8184091 | Msa0440670:intron | 50.0% | |
!! | CTTGTAAGGTGAGGAGTGCT+CGG | + | chr3_3:8184854-8184873 | Msa0440670:intron | 50.0% |
!! | TTGTAAGGTGAGGAGTGCTC+GGG | + | chr3_3:8184855-8184874 | Msa0440670:intron | 50.0% |
!! | GGGTTTGGTGATGGTTCGAT+TGG | - | chr3_3:8185004-8185023 | None:intergenic | 50.0% |
!! | TATCTTGCGGGGTTTGGTGA+TGG | - | chr3_3:8185013-8185032 | None:intergenic | 50.0% |
GGAACAAAGAGAGGAGGTAG+AGG | + | chr3_3:8185657-8185676 | Msa0440670:intron | 50.0% | |
AACACTCGCAACTGCGAGCT+AGG | + | chr3_3:8179320-8179339 | Msa0440670:intron | 55.0% | |
GCTCGCAATGGAGAGCTTAC+AGG | - | chr3_3:8179393-8179412 | None:intergenic | 55.0% | |
GCGAGCTATTCTGCTCGCAA+TGG | - | chr3_3:8179405-8179424 | None:intergenic | 55.0% | |
ATAGCTCGCCATTGCGAGCA+AGG | + | chr3_3:8179416-8179435 | Msa0440670:intron | 55.0% | |
GCCATTGCGAGCAAGGACTT+AGG | + | chr3_3:8179423-8179442 | Msa0440670:intron | 55.0% | |
CCCTAAGTCCTTGCTCGCAA+TGG | - | chr3_3:8179427-8179446 | None:intergenic | 55.0% | |
GGCGAGCAAAGCGTGCATTA+TGG | - | chr3_3:8179453-8179472 | None:intergenic | 55.0% | |
CACGTGCGAAAGGATCGCAT+CGG | - | chr3_3:8179533-8179552 | None:intergenic | 55.0% | |
!! | AAAGTTGGGGGCTTTAGGCC+CGG | + | chr3_3:8179796-8179815 | Msa0440670:intron | 55.0% |
!! | AAAGTTGGGGGCTTTAGGCC+CGG | + | chr3_3:8179796-8179815 | Msa0440670:intron | 55.0% |
!! | AAAGTTGGGGGCTTTAGGCC+CGG | + | chr3_3:8179796-8179815 | Msa0440670:intron | 55.0% |
TAACGAGCACAAAGGCTGCC+GGG | - | chr3_3:8179896-8179915 | None:intergenic | 55.0% | |
!! | AAAGTTGGGGGCTTTAGGCC+CGG | + | chr3_3:8179796-8179815 | Msa0440670:intron | 55.0% |
CGTATATGTTGCCTCGACCG+TGG | + | chr3_3:8180616-8180635 | Msa0440670:intron | 55.0% | |
!! | AGACTAGAGGCGTTCGTGAG+TGG | + | chr3_3:8180657-8180676 | Msa0440670:intron | 55.0% |
GACGCGTGGTTGACAGATGT+AGG | + | chr3_3:8181062-8181081 | Msa0440670:intron | 55.0% | |
GTAGGGGTCATCTGTGTGGT+AGG | + | chr3_3:8181981-8182000 | Msa0440670:intron | 55.0% | |
TTCCTGTCATGGAGCGATCC+GGG | - | chr3_3:8183351-8183370 | None:intergenic | 55.0% | |
GTTCCTGTCATGGAGCGATC+CGG | - | chr3_3:8183352-8183371 | None:intergenic | 55.0% | |
GATCGCTCCATGACAGGAAC+AGG | + | chr3_3:8183352-8183371 | Msa0440670:intron | 55.0% | |
CGGTGTTCCTGTTCCTGTCA+TGG | - | chr3_3:8183362-8183381 | None:intergenic | 55.0% | |
GGAACAGGAACACCGCCAAA+AGG | + | chr3_3:8183367-8183386 | Msa0440670:intron | 55.0% | |
GAATGTACTTGCCCGAGCGA+TGG | + | chr3_3:8183806-8183825 | Msa0440670:intron | 55.0% | |
TCCGATGTGTCTGCAAGTCG+TGG | - | chr3_3:8183915-8183934 | None:intergenic | 55.0% | |
TCGAAAGGAAGAGCGGGAAG+CGG | + | chr3_3:8183985-8184004 | Msa0440670:intron | 55.0% | |
AAGGTGGTACAACCGAGAGC+TGG | + | chr3_3:8184022-8184041 | Msa0440670:intron | 55.0% | |
GCACTCCTCACCTTACAAGC+TGG | - | chr3_3:8184853-8184872 | None:intergenic | 55.0% | |
!! | TGTAAGGTGAGGAGTGCTCG+GGG | + | chr3_3:8184856-8184875 | Msa0440670:intron | 55.0% |
ACCCTCATGCTCAGACCCAA+TGG | + | chr3_3:8184896-8184915 | Msa0440670:intron | 55.0% | |
CCCATTGGGTCTGAGCATGA+GGG | - | chr3_3:8184900-8184919 | None:intergenic | 55.0% | |
CCCTCATGCTCAGACCCAAT+GGG | + | chr3_3:8184897-8184916 | Msa0440670:intron | 55.0% | |
TGCCACGCTTCAAGCCCATT+GGG | - | chr3_3:8184914-8184933 | None:intergenic | 55.0% | |
TTGCCACGCTTCAAGCCCAT+TGG | - | chr3_3:8184915-8184934 | None:intergenic | 55.0% | |
GGTGTGGTCTGAGGGAGAAA+TGG | - | chr3_3:8185046-8185065 | None:intergenic | 55.0% | |
GATTTCGACGGTAGCGACGG+CGG | - | chr3_3:8178419-8178438 | None:intergenic | 60.0% | |
! | GCGAGTTGTGTTGCTCGCAG+TGG | - | chr3_3:8179358-8179377 | None:intergenic | 60.0% |
GTGTGAGCACAAAGGCTGCC+GGG | - | chr3_3:8179976-8179995 | None:intergenic | 60.0% | |
CGTGTGAGCACAAAGGCTGC+CGG | - | chr3_3:8179977-8179996 | None:intergenic | 60.0% | |
CTGCACATTACCCACGGTCG+AGG | - | chr3_3:8180630-8180649 | None:intergenic | 60.0% | |
CTCGACCGTGGGTAATGTGC+AGG | + | chr3_3:8180628-8180647 | Msa0440670:intron | 60.0% | |
! | GACGCGCCCAAGTTGAAAGC+AGG | + | chr3_3:8181457-8181476 | Msa0440670:intron | 60.0% |
TTCCCGGATCGCTCCATGAC+AGG | + | chr3_3:8183346-8183365 | Msa0440670:intron | 60.0% | |
GGAGATGGCATCTACCGCAG+AGG | - | chr3_3:8184067-8184086 | None:intergenic | 60.0% | |
GCCCATTGGGTCTGAGCATG+AGG | - | chr3_3:8184901-8184920 | None:intergenic | 60.0% | |
! | GACCCAATGGGCTTGAAGCG+TGG | + | chr3_3:8184909-8184928 | Msa0440670:intron | 60.0% |
TAGGTATGGGAGAGGCGGTG+TGG | - | chr3_3:8185062-8185081 | None:intergenic | 60.0% | |
TTGCTCGCAGTGGCGAGCTC+TGG | - | chr3_3:8179348-8179367 | None:intergenic | 65.0% | |
! | CAAGAAGTGCAGGCGACGCG+TGG | + | chr3_3:8181048-8181067 | Msa0440670:intron | 65.0% |
!! | AAGGTGAGGAGTGCTCGGGG+CGG | + | chr3_3:8184859-8184878 | Msa0440670:intron | 65.0% |
GGAGAGGCGGTGTGGTCTGA+GGG | - | chr3_3:8185054-8185073 | None:intergenic | 65.0% | |
GGGAGAGGCGGTGTGGTCTG+AGG | - | chr3_3:8185055-8185074 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_3 | gene | 8178197 | 8185944 | 8178197 | ID=Msa0440670;Name=Msa0440670 |
chr3_3 | mRNA | 8178197 | 8185944 | 8178197 | ID=Msa0440670-mRNA-1;Parent=Msa0440670;Name=Msa0440670-mRNA-1;_AED=0.78;_eAED=0.78;_QI=0|0|0|0.2|0|0|5|0|95 |
chr3_3 | exon | 8178197 | 8178202 | 8178197 | ID=Msa0440670-mRNA-1:exon:1759;Parent=Msa0440670-mRNA-1 |
chr3_3 | exon | 8178376 | 8178441 | 8178376 | ID=Msa0440670-mRNA-1:exon:1760;Parent=Msa0440670-mRNA-1 |
chr3_3 | exon | 8178783 | 8178788 | 8178783 | ID=Msa0440670-mRNA-1:exon:1761;Parent=Msa0440670-mRNA-1 |
chr3_3 | exon | 8184299 | 8184331 | 8184299 | ID=Msa0440670-mRNA-1:exon:1762;Parent=Msa0440670-mRNA-1 |
chr3_3 | exon | 8185768 | 8185944 | 8185768 | ID=Msa0440670-mRNA-1:exon:1763;Parent=Msa0440670-mRNA-1 |
chr3_3 | CDS | 8178197 | 8178202 | 8178197 | ID=Msa0440670-mRNA-1:cds;Parent=Msa0440670-mRNA-1 |
chr3_3 | CDS | 8178376 | 8178441 | 8178376 | ID=Msa0440670-mRNA-1:cds;Parent=Msa0440670-mRNA-1 |
chr3_3 | CDS | 8178783 | 8178788 | 8178783 | ID=Msa0440670-mRNA-1:cds;Parent=Msa0440670-mRNA-1 |
chr3_3 | CDS | 8184299 | 8184331 | 8184299 | ID=Msa0440670-mRNA-1:cds;Parent=Msa0440670-mRNA-1 |
chr3_3 | CDS | 8185768 | 8185944 | 8185768 | ID=Msa0440670-mRNA-1:cds;Parent=Msa0440670-mRNA-1 |
Gene Sequence |
Protein sequence |