AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0305190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0305190 MtrunA17_Chr1g0161291 98.113 53 1 0 30 82 245 297 2.42e-31 111
Msa0305190 MtrunA17_Chr8g0391751 62.264 53 18 1 30 82 233 283 2.64e-15 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0305190 AT1G68070.1 67.925 53 17 0 30 82 238 290 3.00e-19 79.7
Msa0305190 AT2G01735.1 51.852 54 26 0 29 82 252 305 5.57e-12 59.7

Find 19 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAATCGAAATCTGTATTT+TGG 0.174750 2_3:-62650790 None:intergenic
GTTGTTGTTGTGAAAGTTAT+GGG 0.330251 2_3:+62650026 Msa0305190:CDS
GTATGCACTGGTGGTTTCTA+CGG 0.419974 2_3:-62650857 None:intergenic
TGTTGTTGTTGTGAAAGTTA+TGG 0.428083 2_3:+62650025 Msa0305190:CDS
AGAAACCACCAGTGCATACT+TGG 0.430009 2_3:+62650861 Msa0305190:CDS
GAGAAGGATAGTGGTGGAGC+TGG 0.468638 2_3:+62650823 Msa0305190:CDS
AACAATGAGGAGAAGGATAG+TGG 0.493619 2_3:+62650814 Msa0305190:CDS
GTGAAAGTTATGGGTTGCAC+TGG 0.520645 2_3:+62650035 Msa0305190:CDS
GGAAATCATACCGCATCCTC+AGG 0.524464 2_3:-62650904 None:intergenic
TTCAGTTGCCAAGTATGCAC+TGG 0.526251 2_3:-62650869 None:intergenic
TATGCACTGGTGGTTTCTAC+GGG 0.528882 2_3:-62650856 None:intergenic
TAGTGGTGGAGCTGGATCAA+TGG 0.540698 2_3:+62650831 Msa0305190:CDS
AGTTGCCAAGTATGCACTGG+TGG 0.550119 2_3:-62650866 None:intergenic
ATTATCAAACAATGAGGAGA+AGG 0.555667 2_3:+62650807 Msa0305190:CDS
AGGACAAGTCACTCAGGAAA+CGG 0.560471 2_3:+62650064 Msa0305190:CDS
ATTTCGATTATCAAACAATG+AGG 0.630619 2_3:+62650801 Msa0305190:CDS
ATCGAGAGGACAAGTCACTC+AGG 0.640034 2_3:+62650058 Msa0305190:CDS
ATGGGTTGCACTGGATCGAG+AGG 0.650417 2_3:+62650044 Msa0305190:CDS
AATGAGGAGAAGGATAGTGG+TGG 0.671940 2_3:+62650817 Msa0305190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAATAACAAAATTTATT+TGG + chr2_3:62649195-62649214 Msa0305190:intron 10.0%
!!! TAACTAATTTTTCATAAAAA+GGG - chr2_3:62650348-62650367 None:intergenic 10.0%
!! CAAAAATAACAAAATTTATT+TGG + chr2_3:62649195-62649214 Msa0305190:intron 10.0%
!!! TAACTAATTTTTCATAAAAA+GGG - chr2_3:62650348-62650367 None:intergenic 10.0%
!! CAAACTACAATATTATATTA+TGG - chr2_3:62648774-62648793 None:intergenic 15.0%
!! TCAAATTAAATATAGAAGAT+GGG - chr2_3:62648933-62648952 None:intergenic 15.0%
!! ATCAAATTAAATATAGAAGA+TGG - chr2_3:62648934-62648953 None:intergenic 15.0%
!! AAATAGAATGAAAGAATAAA+TGG + chr2_3:62649136-62649155 Msa0305190:intron 15.0%
!!! TCTTCAATGAAATTTTAATT+GGG - chr2_3:62649291-62649310 None:intergenic 15.0%
!!! TTCTTCAATGAAATTTTAAT+TGG - chr2_3:62649292-62649311 None:intergenic 15.0%
!!! GAAGAACTTTTTTTTTTTTT+AGG + chr2_3:62649306-62649325 Msa0305190:intron 15.0%
!! AACTTCAAATATAATGTATT+TGG + chr2_3:62649368-62649387 Msa0305190:intron 15.0%
!! AAGATAATAGAAAGATTAAA+AGG + chr2_3:62649840-62649859 Msa0305190:intron 15.0%
!!! CTAACTAATTTTTCATAAAA+AGG - chr2_3:62650349-62650368 None:intergenic 15.0%
!! GAAGAAGAAAAAAAAATTAT+TGG - chr2_3:62650435-62650454 None:intergenic 15.0%
!! AAATAAATAGAACAATTAGA+AGG - chr2_3:62650719-62650738 None:intergenic 15.0%
!! CAAACTACAATATTATATTA+TGG - chr2_3:62648774-62648793 None:intergenic 15.0%
!! TCAAATTAAATATAGAAGAT+GGG - chr2_3:62648933-62648952 None:intergenic 15.0%
!! ATCAAATTAAATATAGAAGA+TGG - chr2_3:62648934-62648953 None:intergenic 15.0%
!! AAATAGAATGAAAGAATAAA+TGG + chr2_3:62649136-62649155 Msa0305190:intron 15.0%
!!! TCTTCAATGAAATTTTAATT+GGG - chr2_3:62649291-62649310 None:intergenic 15.0%
!!! TTCTTCAATGAAATTTTAAT+TGG - chr2_3:62649292-62649311 None:intergenic 15.0%
!!! GAAGAACTTTTTTTTTTTTT+AGG + chr2_3:62649306-62649325 Msa0305190:intron 15.0%
!! AACTTCAAATATAATGTATT+TGG + chr2_3:62649368-62649387 Msa0305190:intron 15.0%
!! AAGATAATAGAAAGATTAAA+AGG + chr2_3:62649840-62649859 Msa0305190:intron 15.0%
!!! CTAACTAATTTTTCATAAAA+AGG - chr2_3:62650349-62650368 None:intergenic 15.0%
!! GAAGAAGAAAAAAAAATTAT+TGG - chr2_3:62650435-62650454 None:intergenic 15.0%
!! AAATAAATAGAACAATTAGA+AGG - chr2_3:62650719-62650738 None:intergenic 15.0%
!! ATAAGCTTCTATTTACATAT+TGG - chr2_3:62648734-62648753 None:intergenic 20.0%
!! AACAAAATTATTCTCCAAAA+TGG - chr2_3:62649027-62649046 None:intergenic 20.0%
!! TCTCTACAATAAATATGTAA+GGG - chr2_3:62649110-62649129 None:intergenic 20.0%
!! AATGAAAGAATAAATGGTTA+AGG + chr2_3:62649142-62649161 Msa0305190:intron 20.0%
!! ATGAAAGAATAAATGGTTAA+GGG + chr2_3:62649143-62649162 Msa0305190:intron 20.0%
!!! ACAAAATTTATTTGGTTTCT+TGG + chr2_3:62649203-62649222 Msa0305190:intron 20.0%
!! TTTAATTGGGCAATATAATT+TGG - chr2_3:62649278-62649297 None:intergenic 20.0%
!! TTGAAGTTATTTACATTGAT+TGG - chr2_3:62649356-62649375 None:intergenic 20.0%
!!! CATGTGAACTTTTTTTATTT+TGG + chr2_3:62649574-62649593 Msa0305190:intron 20.0%
!! TTGATTAGTAAAAATCAAAG+AGG - chr2_3:62649704-62649723 None:intergenic 20.0%
!!! ATCATCTTATCTTCATTTTT+TGG - chr2_3:62649780-62649799 None:intergenic 20.0%
!!! AATTATGATTTTGATAAGCA+TGG + chr2_3:62649817-62649836 Msa0305190:intron 20.0%
!!! GATAGTTTTAAACAAAATCT+TGG + chr2_3:62650156-62650175 Msa0305190:intron 20.0%
!! TATGAAAAATTAGTTAGTGA+AGG + chr2_3:62650352-62650371 Msa0305190:intron 20.0%
!! GGTATGAATAAAAAATAGTT+TGG + chr2_3:62650669-62650688 Msa0305190:intron 20.0%
!!! ATTTCATTTTGAGTGAATAT+AGG + chr2_3:62650735-62650754 Msa0305190:intron 20.0%
!! ATAAGCTTCTATTTACATAT+TGG - chr2_3:62648734-62648753 None:intergenic 20.0%
!! AACAAAATTATTCTCCAAAA+TGG - chr2_3:62649027-62649046 None:intergenic 20.0%
!! TCTCTACAATAAATATGTAA+GGG - chr2_3:62649110-62649129 None:intergenic 20.0%
!! AATGAAAGAATAAATGGTTA+AGG + chr2_3:62649142-62649161 Msa0305190:intron 20.0%
!! ATGAAAGAATAAATGGTTAA+GGG + chr2_3:62649143-62649162 Msa0305190:intron 20.0%
!!! ACAAAATTTATTTGGTTTCT+TGG + chr2_3:62649203-62649222 Msa0305190:intron 20.0%
!! TTTAATTGGGCAATATAATT+TGG - chr2_3:62649278-62649297 None:intergenic 20.0%
!! TTGAAGTTATTTACATTGAT+TGG - chr2_3:62649356-62649375 None:intergenic 20.0%
!!! CATGTGAACTTTTTTTATTT+TGG + chr2_3:62649574-62649593 Msa0305190:intron 20.0%
!! TTGATTAGTAAAAATCAAAG+AGG - chr2_3:62649704-62649723 None:intergenic 20.0%
!!! ATCATCTTATCTTCATTTTT+TGG - chr2_3:62649780-62649799 None:intergenic 20.0%
!!! AATTATGATTTTGATAAGCA+TGG + chr2_3:62649817-62649836 Msa0305190:intron 20.0%
!!! GATAGTTTTAAACAAAATCT+TGG + chr2_3:62650156-62650175 Msa0305190:intron 20.0%
!! TATGAAAAATTAGTTAGTGA+AGG + chr2_3:62650352-62650371 Msa0305190:intron 20.0%
!! GGTATGAATAAAAAATAGTT+TGG + chr2_3:62650669-62650688 Msa0305190:intron 20.0%
!!! ATTTCATTTTGAGTGAATAT+AGG + chr2_3:62650735-62650754 Msa0305190:intron 20.0%
! AAACTTCAAATCAATGAGAT+TGG + chr2_3:62648560-62648579 Msa0305190:intron 25.0%
! AACTTCAAATCAATGAGATT+GGG + chr2_3:62648561-62648580 Msa0305190:intron 25.0%
!! CATACCATGAGATAAAATTT+TGG - chr2_3:62648857-62648876 None:intergenic 25.0%
! GTTATATTGCACTAAATGAT+AGG + chr2_3:62648967-62648986 Msa0305190:intron 25.0%
! AATGGACAAGTATTATGAAA+CGG - chr2_3:62649009-62649028 None:intergenic 25.0%
!! TTCATAATACTTGTCCATTT+TGG + chr2_3:62649010-62649029 Msa0305190:intron 25.0%
! TGTTACATTGAAACTTGAAA+GGG - chr2_3:62649063-62649082 None:intergenic 25.0%
! ATGTTACATTGAAACTTGAA+AGG - chr2_3:62649064-62649083 None:intergenic 25.0%
! CTCTCTACAATAAATATGTA+AGG - chr2_3:62649111-62649130 None:intergenic 25.0%
!! TTCAAAATACATGTCCATTT+TGG - chr2_3:62649243-62649262 None:intergenic 25.0%
!!! AATGGACATGTATTTTGAAA+CGG + chr2_3:62649244-62649263 Msa0305190:intron 25.0%
!!! TTGATTGCTTTTATTGTGTT+TGG + chr2_3:62649729-62649748 Msa0305190:intron 25.0%
!! GATCTGTTTATTTAAGACTT+AGG - chr2_3:62649926-62649945 None:intergenic 25.0%
! AACACATTCACAATTGTTAA+AGG - chr2_3:62649977-62649996 None:intergenic 25.0%
! AAGGAAAATACTTGTTTGAA+GGG - chr2_3:62650248-62650267 None:intergenic 25.0%
! AACCAAAATTACATGTGTAT+TGG - chr2_3:62650379-62650398 None:intergenic 25.0%
!!! ACATGTAATTTTGGTTAGTT+AGG + chr2_3:62650383-62650402 Msa0305190:intron 25.0%
!!! ATCTGTTTTTGAATCTTTAC+AGG + chr2_3:62650515-62650534 Msa0305190:intron 25.0%
!!! TTTTTTATTCATACCTATCC+TGG - chr2_3:62650664-62650683 None:intergenic 25.0%
!! GATAATCGAAATCTGTATTT+TGG - chr2_3:62650793-62650812 None:intergenic 25.0%
! ATTTCGATTATCAAACAATG+AGG + chr2_3:62650801-62650820 Msa0305190:CDS 25.0%
! AAACTTCAAATCAATGAGAT+TGG + chr2_3:62648560-62648579 Msa0305190:intron 25.0%
! AACTTCAAATCAATGAGATT+GGG + chr2_3:62648561-62648580 Msa0305190:intron 25.0%
!! CATACCATGAGATAAAATTT+TGG - chr2_3:62648857-62648876 None:intergenic 25.0%
! GTTATATTGCACTAAATGAT+AGG + chr2_3:62648967-62648986 Msa0305190:intron 25.0%
! AATGGACAAGTATTATGAAA+CGG - chr2_3:62649009-62649028 None:intergenic 25.0%
!! TTCATAATACTTGTCCATTT+TGG + chr2_3:62649010-62649029 Msa0305190:intron 25.0%
! TGTTACATTGAAACTTGAAA+GGG - chr2_3:62649063-62649082 None:intergenic 25.0%
! ATGTTACATTGAAACTTGAA+AGG - chr2_3:62649064-62649083 None:intergenic 25.0%
! CTCTCTACAATAAATATGTA+AGG - chr2_3:62649111-62649130 None:intergenic 25.0%
!! TTCAAAATACATGTCCATTT+TGG - chr2_3:62649243-62649262 None:intergenic 25.0%
!!! AATGGACATGTATTTTGAAA+CGG + chr2_3:62649244-62649263 Msa0305190:intron 25.0%
!!! TTGATTGCTTTTATTGTGTT+TGG + chr2_3:62649729-62649748 Msa0305190:intron 25.0%
!! GATCTGTTTATTTAAGACTT+AGG - chr2_3:62649926-62649945 None:intergenic 25.0%
! AACACATTCACAATTGTTAA+AGG - chr2_3:62649977-62649996 None:intergenic 25.0%
! AAGGAAAATACTTGTTTGAA+GGG - chr2_3:62650248-62650267 None:intergenic 25.0%
! AACCAAAATTACATGTGTAT+TGG - chr2_3:62650379-62650398 None:intergenic 25.0%
!!! ACATGTAATTTTGGTTAGTT+AGG + chr2_3:62650383-62650402 Msa0305190:intron 25.0%
!!! ATCTGTTTTTGAATCTTTAC+AGG + chr2_3:62650515-62650534 Msa0305190:intron 25.0%
!!! TTTTTTATTCATACCTATCC+TGG - chr2_3:62650664-62650683 None:intergenic 25.0%
!! GATAATCGAAATCTGTATTT+TGG - chr2_3:62650793-62650812 None:intergenic 25.0%
! ATTTCGATTATCAAACAATG+AGG + chr2_3:62650801-62650820 Msa0305190:CDS 25.0%
!!! AGAATGTGCAAGAGTATTTT+GGG + chr2_3:62648690-62648709 Msa0305190:intron 30.0%
! TGAGCCAAAATTTTATCTCA+TGG + chr2_3:62648850-62648869 Msa0305190:intron 30.0%
!!! GCATAAAATTTTGAGGTTGA+TGG - chr2_3:62648890-62648909 None:intergenic 30.0%
! CAATCAGGCATAAAATTTTG+AGG - chr2_3:62648897-62648916 None:intergenic 30.0%
TTACTGCAATTTCTCCAAAA+TGG + chr2_3:62649226-62649245 Msa0305190:intron 30.0%
! TGTTGTTGTTGTGAAAGTTA+TGG + chr2_3:62650025-62650044 Msa0305190:CDS 30.0%
! GTTGTTGTTGTGAAAGTTAT+GGG + chr2_3:62650026-62650045 Msa0305190:CDS 30.0%
AAAATACTTGTTTGAAGGGA+TGG - chr2_3:62650244-62650263 None:intergenic 30.0%
CAAGGAAAATACTTGTTTGA+AGG - chr2_3:62650249-62650268 None:intergenic 30.0%
! AAACAAGTATTTTCCTTGCA+AGG + chr2_3:62650251-62650270 Msa0305190:intron 30.0%
CAATATCTTTATTCCTTGCA+AGG - chr2_3:62650267-62650286 None:intergenic 30.0%
ATTGAAATACATTGTGCCAT+CGG + chr2_3:62650283-62650302 Msa0305190:intron 30.0%
ATTGTAGATAAATTTCCCGA+TGG - chr2_3:62650302-62650321 None:intergenic 30.0%
! GTCCAATACACATGTAATTT+TGG + chr2_3:62650374-62650393 Msa0305190:intron 30.0%
AAACAAATGAGCTGCTTATT+AGG - chr2_3:62650410-62650429 None:intergenic 30.0%
TTTGTTGCTGTACTAATGAA+AGG + chr2_3:62650488-62650507 Msa0305190:intron 30.0%
! GTTTTTGAATCTTTACAGGT+TGG + chr2_3:62650519-62650538 Msa0305190:intron 30.0%
TAGAGAATAGTAATGATGCA+GGG - chr2_3:62650634-62650653 None:intergenic 30.0%
ATAGAGAATAGTAATGATGC+AGG - chr2_3:62650635-62650654 None:intergenic 30.0%
!! CATTTTGAGTGAATATAGGA+AGG + chr2_3:62650739-62650758 Msa0305190:intron 30.0%
ATTATCAAACAATGAGGAGA+AGG + chr2_3:62650807-62650826 Msa0305190:CDS 30.0%
!!! AGAATGTGCAAGAGTATTTT+GGG + chr2_3:62648690-62648709 Msa0305190:intron 30.0%
! TGAGCCAAAATTTTATCTCA+TGG + chr2_3:62648850-62648869 Msa0305190:intron 30.0%
!!! GCATAAAATTTTGAGGTTGA+TGG - chr2_3:62648890-62648909 None:intergenic 30.0%
! CAATCAGGCATAAAATTTTG+AGG - chr2_3:62648897-62648916 None:intergenic 30.0%
TTACTGCAATTTCTCCAAAA+TGG + chr2_3:62649226-62649245 Msa0305190:intron 30.0%
! TGTTGTTGTTGTGAAAGTTA+TGG + chr2_3:62650025-62650044 Msa0305190:CDS 30.0%
! GTTGTTGTTGTGAAAGTTAT+GGG + chr2_3:62650026-62650045 Msa0305190:CDS 30.0%
AAAATACTTGTTTGAAGGGA+TGG - chr2_3:62650244-62650263 None:intergenic 30.0%
CAAGGAAAATACTTGTTTGA+AGG - chr2_3:62650249-62650268 None:intergenic 30.0%
! AAACAAGTATTTTCCTTGCA+AGG + chr2_3:62650251-62650270 Msa0305190:intron 30.0%
CAATATCTTTATTCCTTGCA+AGG - chr2_3:62650267-62650286 None:intergenic 30.0%
ATTGAAATACATTGTGCCAT+CGG + chr2_3:62650283-62650302 Msa0305190:intron 30.0%
ATTGTAGATAAATTTCCCGA+TGG - chr2_3:62650302-62650321 None:intergenic 30.0%
! GTCCAATACACATGTAATTT+TGG + chr2_3:62650374-62650393 Msa0305190:intron 30.0%
AAACAAATGAGCTGCTTATT+AGG - chr2_3:62650410-62650429 None:intergenic 30.0%
TTTGTTGCTGTACTAATGAA+AGG + chr2_3:62650488-62650507 Msa0305190:intron 30.0%
! GTTTTTGAATCTTTACAGGT+TGG + chr2_3:62650519-62650538 Msa0305190:intron 30.0%
TAGAGAATAGTAATGATGCA+GGG - chr2_3:62650634-62650653 None:intergenic 30.0%
ATAGAGAATAGTAATGATGC+AGG - chr2_3:62650635-62650654 None:intergenic 30.0%
!! CATTTTGAGTGAATATAGGA+AGG + chr2_3:62650739-62650758 Msa0305190:intron 30.0%
ATTATCAAACAATGAGGAGA+AGG + chr2_3:62650807-62650826 Msa0305190:CDS 30.0%
TTGGGCAAAATTGTTCAATG+AGG + chr2_3:62648579-62648598 Msa0305190:intron 35.0%
!! TACTGAAATGTTCTGAGACT+TGG + chr2_3:62648634-62648653 Msa0305190:intron 35.0%
!!! GAGAATGTGCAAGAGTATTT+TGG + chr2_3:62648689-62648708 Msa0305190:intron 35.0%
!!! GACATGTATTTTGAAACGGA+GGG + chr2_3:62649248-62649267 Msa0305190:intron 35.0%
GATTTCAGTAGCTTCTGTAA+AGG + chr2_3:62649650-62649669 Msa0305190:intron 35.0%
ACAATTGTTAAAGGAGAGCA+AGG - chr2_3:62649968-62649987 None:intergenic 35.0%
AATTGTGAATGTGTTTGAGC+AGG + chr2_3:62649982-62650001 Msa0305190:intron 35.0%
TTGAAATACATTGTGCCATC+GGG + chr2_3:62650284-62650303 Msa0305190:intron 35.0%
CTACAATGTCCAGAAACTTA+TGG + chr2_3:62650315-62650334 Msa0305190:intron 35.0%
GGAAAATGACCATAAGTTTC+TGG - chr2_3:62650327-62650346 None:intergenic 35.0%
AGCAACAAACTTTGCATAGT+TGG - chr2_3:62650477-62650496 None:intergenic 35.0%
! TGAACGAATACTTTTACCTG+AGG + chr2_3:62650888-62650907 Msa0305190:CDS 35.0%
TTGGGCAAAATTGTTCAATG+AGG + chr2_3:62648579-62648598 Msa0305190:intron 35.0%
!! TACTGAAATGTTCTGAGACT+TGG + chr2_3:62648634-62648653 Msa0305190:intron 35.0%
!!! GAGAATGTGCAAGAGTATTT+TGG + chr2_3:62648689-62648708 Msa0305190:intron 35.0%
!!! GACATGTATTTTGAAACGGA+GGG + chr2_3:62649248-62649267 Msa0305190:intron 35.0%
GATTTCAGTAGCTTCTGTAA+AGG + chr2_3:62649650-62649669 Msa0305190:intron 35.0%
ACAATTGTTAAAGGAGAGCA+AGG - chr2_3:62649968-62649987 None:intergenic 35.0%
AATTGTGAATGTGTTTGAGC+AGG + chr2_3:62649982-62650001 Msa0305190:intron 35.0%
TTGAAATACATTGTGCCATC+GGG + chr2_3:62650284-62650303 Msa0305190:intron 35.0%
CTACAATGTCCAGAAACTTA+TGG + chr2_3:62650315-62650334 Msa0305190:intron 35.0%
GGAAAATGACCATAAGTTTC+TGG - chr2_3:62650327-62650346 None:intergenic 35.0%
AGCAACAAACTTTGCATAGT+TGG - chr2_3:62650477-62650496 None:intergenic 35.0%
! TGAACGAATACTTTTACCTG+AGG + chr2_3:62650888-62650907 Msa0305190:CDS 35.0%
GTCTCAGAACATTTCAGTAG+TGG - chr2_3:62648633-62648652 None:intergenic 40.0%
GGCTGCAAACAAATACAATC+AGG - chr2_3:62648912-62648931 None:intergenic 40.0%
GGACAAGTATTATGAAACGG+AGG - chr2_3:62649006-62649025 None:intergenic 40.0%
!!! GGACATGTATTTTGAAACGG+AGG + chr2_3:62649247-62649266 Msa0305190:intron 40.0%
GAAACGGTAGAAATTCCTTG+AGG + chr2_3:62650080-62650099 Msa0305190:intron 40.0%
! TACCATCTTCTGTGTTGTTC+TGG + chr2_3:62650573-62650592 Msa0305190:intron 40.0%
ACTATTCTCTATGCTGTTCC+AGG + chr2_3:62650643-62650662 Msa0305190:intron 40.0%
AACAATGAGGAGAAGGATAG+TGG + chr2_3:62650814-62650833 Msa0305190:CDS 40.0%
GTCTCAGAACATTTCAGTAG+TGG - chr2_3:62648633-62648652 None:intergenic 40.0%
GGCTGCAAACAAATACAATC+AGG - chr2_3:62648912-62648931 None:intergenic 40.0%
GGACAAGTATTATGAAACGG+AGG - chr2_3:62649006-62649025 None:intergenic 40.0%
!!! GGACATGTATTTTGAAACGG+AGG + chr2_3:62649247-62649266 Msa0305190:intron 40.0%
GAAACGGTAGAAATTCCTTG+AGG + chr2_3:62650080-62650099 Msa0305190:intron 40.0%
! TACCATCTTCTGTGTTGTTC+TGG + chr2_3:62650573-62650592 Msa0305190:intron 40.0%
ACTATTCTCTATGCTGTTCC+AGG + chr2_3:62650643-62650662 Msa0305190:intron 40.0%
AACAATGAGGAGAAGGATAG+TGG + chr2_3:62650814-62650833 Msa0305190:CDS 40.0%
GTGAATGTGTTTGAGCAGGA+TGG + chr2_3:62649986-62650005 Msa0305190:intron 45.0%
! GTGAAAGTTATGGGTTGCAC+TGG + chr2_3:62650035-62650054 Msa0305190:CDS 45.0%
AGGACAAGTCACTCAGGAAA+CGG + chr2_3:62650064-62650083 Msa0305190:CDS 45.0%
TGCTAGTAGTAAACGCCTCA+AGG - chr2_3:62650098-62650117 None:intergenic 45.0%
TATGCACATAACCCCTCTGT+TGG + chr2_3:62650118-62650137 Msa0305190:intron 45.0%
ATGCACATAACCCCTCTGTT+GGG + chr2_3:62650119-62650138 Msa0305190:intron 45.0%
ACCTGATAGTACCCAACAGA+GGG - chr2_3:62650133-62650152 None:intergenic 45.0%
TACCTGATAGTACCCAACAG+AGG - chr2_3:62650134-62650153 None:intergenic 45.0%
TGCCAGAACAACACAGAAGA+TGG - chr2_3:62650578-62650597 None:intergenic 45.0%
GTTGTTCTGGCATGCTTGAT+TGG + chr2_3:62650586-62650605 Msa0305190:intron 45.0%
TCTCTATGCTGTTCCAGGAT+AGG + chr2_3:62650648-62650667 Msa0305190:intron 45.0%
! AATGAGGAGAAGGATAGTGG+TGG + chr2_3:62650817-62650836 Msa0305190:CDS 45.0%
! TATGCACTGGTGGTTTCTAC+GGG - chr2_3:62650859-62650878 None:intergenic 45.0%
! GTATGCACTGGTGGTTTCTA+CGG - chr2_3:62650860-62650879 None:intergenic 45.0%
AGAAACCACCAGTGCATACT+TGG + chr2_3:62650861-62650880 Msa0305190:CDS 45.0%
TTCAGTTGCCAAGTATGCAC+TGG - chr2_3:62650872-62650891 None:intergenic 45.0%
GTGAATGTGTTTGAGCAGGA+TGG + chr2_3:62649986-62650005 Msa0305190:intron 45.0%
! GTGAAAGTTATGGGTTGCAC+TGG + chr2_3:62650035-62650054 Msa0305190:CDS 45.0%
AGGACAAGTCACTCAGGAAA+CGG + chr2_3:62650064-62650083 Msa0305190:CDS 45.0%
TGCTAGTAGTAAACGCCTCA+AGG - chr2_3:62650098-62650117 None:intergenic 45.0%
TATGCACATAACCCCTCTGT+TGG + chr2_3:62650118-62650137 Msa0305190:intron 45.0%
ATGCACATAACCCCTCTGTT+GGG + chr2_3:62650119-62650138 Msa0305190:intron 45.0%
ACCTGATAGTACCCAACAGA+GGG - chr2_3:62650133-62650152 None:intergenic 45.0%
TACCTGATAGTACCCAACAG+AGG - chr2_3:62650134-62650153 None:intergenic 45.0%
TGCCAGAACAACACAGAAGA+TGG - chr2_3:62650578-62650597 None:intergenic 45.0%
GTTGTTCTGGCATGCTTGAT+TGG + chr2_3:62650586-62650605 Msa0305190:intron 45.0%
TCTCTATGCTGTTCCAGGAT+AGG + chr2_3:62650648-62650667 Msa0305190:intron 45.0%
! AATGAGGAGAAGGATAGTGG+TGG + chr2_3:62650817-62650836 Msa0305190:CDS 45.0%
! TATGCACTGGTGGTTTCTAC+GGG - chr2_3:62650859-62650878 None:intergenic 45.0%
! GTATGCACTGGTGGTTTCTA+CGG - chr2_3:62650860-62650879 None:intergenic 45.0%
AGAAACCACCAGTGCATACT+TGG + chr2_3:62650861-62650880 Msa0305190:CDS 45.0%
TTCAGTTGCCAAGTATGCAC+TGG - chr2_3:62650872-62650891 None:intergenic 45.0%
!!! TTTTATCTTATAAAATATTT+AGG + chr2_3:62649618-62649637 Msa0305190:intron 5.0%
!!! TTTTATCTTATAAAATATTT+AGG + chr2_3:62649618-62649637 Msa0305190:intron 5.0%
ATCGAGAGGACAAGTCACTC+AGG + chr2_3:62650058-62650077 Msa0305190:CDS 50.0%
CCTGATAGTACCCAACAGAG+GGG - chr2_3:62650132-62650151 None:intergenic 50.0%
! TAGTGGTGGAGCTGGATCAA+TGG + chr2_3:62650831-62650850 Msa0305190:CDS 50.0%
AGTTGCCAAGTATGCACTGG+TGG - chr2_3:62650869-62650888 None:intergenic 50.0%
ATCGAGAGGACAAGTCACTC+AGG + chr2_3:62650058-62650077 Msa0305190:CDS 50.0%
CCTGATAGTACCCAACAGAG+GGG - chr2_3:62650132-62650151 None:intergenic 50.0%
! TAGTGGTGGAGCTGGATCAA+TGG + chr2_3:62650831-62650850 Msa0305190:CDS 50.0%
AGTTGCCAAGTATGCACTGG+TGG - chr2_3:62650869-62650888 None:intergenic 50.0%
! ATGGGTTGCACTGGATCGAG+AGG + chr2_3:62650044-62650063 Msa0305190:CDS 55.0%
CCCCTCTGTTGGGTACTATC+AGG + chr2_3:62650129-62650148 Msa0305190:intron 55.0%
! GAGAAGGATAGTGGTGGAGC+TGG + chr2_3:62650823-62650842 Msa0305190:CDS 55.0%
! ATGGGTTGCACTGGATCGAG+AGG + chr2_3:62650044-62650063 Msa0305190:CDS 55.0%
CCCCTCTGTTGGGTACTATC+AGG + chr2_3:62650129-62650148 Msa0305190:intron 55.0%
! GAGAAGGATAGTGGTGGAGC+TGG + chr2_3:62650823-62650842 Msa0305190:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 62648526 62650915 62648526 ID=Msa0305190;Name=Msa0305190
chr2_3 mRNA 62648526 62650915 62648526 ID=Msa0305190-mRNA-1;Parent=Msa0305190;Name=Msa0305190-mRNA-1;_AED=0.99;_eAED=0.99;_QI=0|0|0|0.33|0.5|0.66|3|0|82
chr2_3 exon 62648526 62648530 62648526 ID=Msa0305190-mRNA-1:exon:20919;Parent=Msa0305190-mRNA-1
chr2_3 exon 62650004 62650085 62650004 ID=Msa0305190-mRNA-1:exon:20920;Parent=Msa0305190-mRNA-1
chr2_3 exon 62650757 62650915 62650757 ID=Msa0305190-mRNA-1:exon:20921;Parent=Msa0305190-mRNA-1
chr2_3 CDS 62648526 62648530 62648526 ID=Msa0305190-mRNA-1:cds;Parent=Msa0305190-mRNA-1
chr2_3 CDS 62650004 62650085 62650004 ID=Msa0305190-mRNA-1:cds;Parent=Msa0305190-mRNA-1
chr2_3 CDS 62650757 62650915 62650757 ID=Msa0305190-mRNA-1:cds;Parent=Msa0305190-mRNA-1
Gene Sequence

>Msa0305190

ATGCTGATGGAATCACAGATTAAGCATGTTGTTGTTGTGAAAGTTATGGGTTGCACTGGATCGAGAGGACAAGTCACTCAGGAAACGGAAGGTGCATCAGAAGCAGATCTTAGTATACTTCCAAAATACAGATTTCGATTATCAAACAATGAGGAGAAGGATAGTGGTGGAGCTGGATCAATGGTTCCCGTAGAAACCACCAGTGCATACTTGGCAACTGAACGAATACTTTTACCTGAGGATGCG

Protein sequence

>Msa0305190

MLMESQIKHVVVVKVMGCTGSRGQVTQETEGASEADLSILPKYRFRLSNNEEKDSGGAGSMVPVETTSAYLATERILLPEDA