AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0861130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861130 MtrunA17_Chr5g0440971 95.816 239 10 0 1 239 1 239 5.01e-172 473
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861130 AT2G26970.1 60.593 236 78 4 1 236 1 221 3.78e-101 293
Msa0861130 AT2G26970.2 58.898 236 78 2 1 236 1 217 1.82e-100 291

Find 65 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGGTCGGGTCATGGGTTT+TGG 0.160133 5_4:+60301959 None:intergenic
GAGAAGATCTCCGCCAATTT+TGG 0.229266 5_4:+60298220 None:intergenic
GCAGAAATACATGCCAAAAT+TGG 0.239555 5_4:-60298233 Msa0861130:intron
CAACCTCCTTCTCTTCCTTC+TGG 0.262802 5_4:-60301742 Msa0861130:intron
ATCCATATTTGTCTGATTAC+AGG 0.267713 5_4:-60300463 Msa0861130:CDS
GGTTGGGTTGGGTCGGGTCA+TGG 0.285206 5_4:+60301952 None:intergenic
CGTTATCATTTCTTGACCTT+TGG 0.318803 5_4:+60297797 None:intergenic
AAAGTGGTGATGGGTGGGTT+GGG 0.335987 5_4:+60301936 None:intergenic
TATTGAAGTGGATAGAATTC+TGG 0.339978 5_4:-60300310 Msa0861130:CDS
TGGTGATGGGTGGGTTGGGT+TGG 0.346515 5_4:+60301940 None:intergenic
ATTACAGGTTACCTCTTGTC+TGG 0.356384 5_4:-60300448 Msa0861130:CDS
AATATATACCTCCACCGATT+TGG 0.364407 5_4:+60300254 None:intergenic
GGTGATGGGTGGGTTGGGTT+GGG 0.368520 5_4:+60301941 None:intergenic
GAATTCGTTAAGAAACATAT+TGG 0.379765 5_4:-60298527 Msa0861130:CDS
GTTTGATGTATGACCAAATC+AGG 0.394324 5_4:+60299504 None:intergenic
AGGAAGAGAAGGAGGTTGAA+TGG 0.397608 5_4:+60301747 None:intergenic
TGAAAGAGAAGCTGAAGAAC+AGG 0.404389 5_4:-60299259 Msa0861130:intron
GTTGGGTTGGGTCGGGTCAT+GGG 0.404911 5_4:+60301953 None:intergenic
ATGGGTGGGTTGGGTTGGGT+CGG 0.405935 5_4:+60301945 None:intergenic
ATCCTAAATATAAAATTTGT+CGG 0.408088 5_4:-60301994 Msa0861130:five_prime_UTR
AACCTGTAATCAGACAAATA+TGG 0.412327 5_4:+60300461 None:intergenic
AAAAGTGGTGATGGGTGGGT+TGG 0.427048 5_4:+60301935 None:intergenic
TGGGTGGGTTGGGTTGGGTC+GGG 0.429933 5_4:+60301946 None:intergenic
TCCTAAATATAAAATTTGTC+GGG 0.462721 5_4:-60301993 Msa0861130:five_prime_UTR
CTCTTTCAAGTATTCCACTT+TGG 0.465585 5_4:+60301851 None:intergenic
CTCAGAGTCAAAAGTGGTGA+TGG 0.474174 5_4:+60301926 None:intergenic
TCTCAGCTCTTTGCATTCGC+TGG 0.486307 5_4:-60298171 Msa0861130:CDS
CAAACTAAGGAGTGCCTTGA+CGG 0.488693 5_4:-60299486 Msa0861130:CDS
AGATGGAAACTTAACCAAAT+CGG 0.490696 5_4:-60300268 Msa0861130:CDS
TGCATTCGCTGGTATCCTAA+AGG 0.490721 5_4:-60298160 Msa0861130:intron
AGTGGTGGAAAGAAAGCTAA+TGG 0.513081 5_4:-60300527 Msa0861130:CDS
GGCAGGAAATTCGATATATG+TGG 0.518560 5_4:-60298483 Msa0861130:CDS
AATATCAAGATCTATTTGCT+AGG 0.521798 5_4:+60297686 None:intergenic
TAAGGAGTGCCTTGACGGGA+TGG 0.527772 5_4:-60299481 Msa0861130:CDS
GCCTTGACGGGATGGGAGAA+TGG 0.534435 5_4:-60299473 Msa0861130:CDS
TGTGGATTTACAATATATGA+AGG 0.536829 5_4:-60298465 Msa0861130:intron
TTTCTTGGTGCAGGTAGTGG+TGG 0.539229 5_4:-60300542 Msa0861130:intron
AGGTACTTACAAACCTCTCT+TGG 0.539546 5_4:-60298504 Msa0861130:CDS
CACTCACTCAGAGTCAAAAG+TGG 0.542326 5_4:+60301920 None:intergenic
ACCTCTTGTCTGGATTGACT+TGG 0.542563 5_4:-60300438 Msa0861130:CDS
ATTGCTTGTATAATTACAGA+TGG 0.542610 5_4:-60300285 Msa0861130:CDS
TTTGGTCATACATCAAACTA+AGG 0.543284 5_4:-60299499 Msa0861130:CDS
GAAAAGAAACTGCGCCAAAG+TGG 0.544844 5_4:-60301865 Msa0861130:five_prime_UTR
GGCGGAGATCTTCTCTCATG+TGG 0.546349 5_4:-60298212 Msa0861130:CDS
GAAATACATGCCAAAATTGG+CGG 0.553319 5_4:-60298230 Msa0861130:CDS
AGCATACCAGAAGGAAGAGA+AGG 0.556437 5_4:+60301736 None:intergenic
AAACTAAGGAGTGCCTTGAC+GGG 0.562071 5_4:-60299485 Msa0861130:CDS
ACTTACAAACCTCTCTTGGC+AGG 0.564752 5_4:-60298500 Msa0861130:CDS
AAGGAGTGCCTTGACGGGAT+GGG 0.565318 5_4:-60299480 Msa0861130:CDS
TGGATTGACTTGGAAATGAC+TGG 0.570107 5_4:-60300428 Msa0861130:intron
GAGTCAAAAGTGGTGATGGG+TGG 0.575903 5_4:+60301930 None:intergenic
TTCGTTAAGAAACATATTGG+AGG 0.577409 5_4:-60298524 Msa0861130:CDS
ATCGAATTTCCTGCCAAGAG+AGG 0.584584 5_4:+60298491 None:intergenic
AAACTTAACCAAATCGGTGG+AGG 0.589283 5_4:-60300262 Msa0861130:intron
TCCAAGTCAATCCAGACAAG+AGG 0.594779 5_4:+60300437 None:intergenic
AAAAGTCATCACGCTGCTAG+TGG 0.595217 5_4:-60299447 Msa0861130:intron
TCAGAGTCAAAAGTGGTGAT+GGG 0.602053 5_4:+60301927 None:intergenic
TGATATTAGAGAAAGTATTG+AGG 0.606819 5_4:-60297852 Msa0861130:CDS
TGCAGGTTTGAATATTGAAG+TGG 0.613241 5_4:-60300322 Msa0861130:intron
ACCATTCTCCCATCCCGTCA+AGG 0.616339 5_4:+60299472 None:intergenic
ATACCAGAAGGAAGAGAAGG+AGG 0.632940 5_4:+60301739 None:intergenic
TGGAAACTTAACCAAATCGG+TGG 0.638946 5_4:-60300265 Msa0861130:CDS
AGTCAAAAGTGGTGATGGGT+GGG 0.641255 5_4:+60301931 None:intergenic
ATAAACTTGTCATAACAATG+AGG 0.654254 5_4:+60297712 None:intergenic
TGAGGAACTCAAGTACTACA+AGG 0.661289 5_4:-60297834 Msa0861130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCCTAAATATAAAATTTGT+CGG - chr5_4:60297530-60297549 Msa0861130:three_prime_UTR 15.0%
!!! TCACTTCTTTTTTTATTATT+AGG - chr5_4:60297842-60297861 Msa0861130:CDS 15.0%
!!! CACTTCTTTTTTTATTATTA+GGG - chr5_4:60297843-60297862 Msa0861130:CDS 15.0%
!!! AAAAATTCCATTTTTTACTT+TGG - chr5_4:60298003-60298022 Msa0861130:intron 15.0%
!! AAATTATATAAAAATGACCA+AGG - chr5_4:60298438-60298457 Msa0861130:intron 15.0%
!! TCTACATATCAATTTATTTA+AGG + chr5_4:60299625-60299644 None:intergenic 15.0%
!!! TACATATTTGTATCTATTTT+AGG - chr5_4:60299935-60299954 Msa0861130:intron 15.0%
!!! ACATATTTGTATCTATTTTA+GGG - chr5_4:60299996-60300015 Msa0861130:intron 15.0%
!!! CTTACATTTCTATTTTAAAT+AGG - chr5_4:60300341-60300360 Msa0861130:intron 15.0%
!! TCCTAAATATAAAATTTGTC+GGG - chr5_4:60297531-60297550 Msa0861130:three_prime_UTR 20.0%
!! ACAAATTAGAAGAAGAAAAA+TGG - chr5_4:60297703-60297722 Msa0861130:three_prime_UTR 20.0%
!! AGATTTACCAAAGTAAAAAA+TGG + chr5_4:60298013-60298032 None:intergenic 20.0%
!! AAAAGAGAGAAAATCTTTAT+TGG - chr5_4:60298246-60298265 Msa0861130:intron 20.0%
!! TCTACATATCAATTTATTGA+AGG + chr5_4:60299561-60299580 None:intergenic 20.0%
!! GTGATATTATGAAATTTATC+AGG - chr5_4:60299794-60299813 Msa0861130:intron 20.0%
!!! AGTAAAAAACTGATTTAGTA+TGG - chr5_4:60299960-60299979 Msa0861130:intron 20.0%
!!! TAATTTGCATTTTGATTTGT+TGG - chr5_4:60300124-60300143 Msa0861130:intron 20.0%
!! AAAGGGATTTAATAATGTTA+AGG + chr5_4:60300154-60300173 None:intergenic 20.0%
!! ATTAAGTTCATAAAGAATAC+TGG - chr5_4:60300510-60300529 Msa0861130:CDS 20.0%
!! CAAATCATATTATGAGATAA+TGG - chr5_4:60300899-60300918 Msa0861130:intron 20.0%
!! ACAAATACACTACTTTATTA+TGG + chr5_4:60301096-60301115 None:intergenic 20.0%
!!! TCCAGAATTAAATATACTTT+TGG - chr5_4:60301498-60301517 Msa0861130:intron 20.0%
!!! TCCAAAAGTATATTTAATTC+TGG + chr5_4:60301502-60301521 None:intergenic 20.0%
!!! TTGATATTGAAGTGTATTTT+TGG - chr5_4:60301853-60301872 Msa0861130:five_prime_UTR 20.0%
!! ACCCGACAAATTTTATATTT+AGG + chr5_4:60297535-60297554 None:intergenic 25.0%
!!! AAAGCTTGTTAACTCTTTTT+CGG - chr5_4:60297727-60297746 Msa0861130:three_prime_UTR 25.0%
! ATTGAATAACAGGGATAAAA+GGG + chr5_4:60297820-60297839 None:intergenic 25.0%
! TAAAATGAAGTAAACCAACA+TGG + chr5_4:60297967-60297986 None:intergenic 25.0%
!!! TTTGGTAAATCTTTAAAGCA+CGG - chr5_4:60298021-60298040 Msa0861130:intron 25.0%
!!! TTTTTCACCTATTTTGATCA+GGG + chr5_4:60298286-60298305 None:intergenic 25.0%
! TGATCAAAATAGGTGAAAAA+CGG - chr5_4:60298286-60298305 Msa0861130:intron 25.0%
! ATAACTCTCCTAATTCAAAA+CGG + chr5_4:60298416-60298435 None:intergenic 25.0%
! TCGTTCTTAAATTATCGAAT+TGG - chr5_4:60298505-60298524 Msa0861130:CDS 25.0%
! AAATTATCGAATTGGAGAAT+AGG - chr5_4:60298513-60298532 Msa0861130:CDS 25.0%
! AAGTAGTTAAATAGGTGATT+TGG - chr5_4:60298597-60298616 Msa0861130:intron 25.0%
!!! ATTACCAGTTCTAAAATTTC+TGG - chr5_4:60298887-60298906 Msa0861130:intron 25.0%
! ATTGCTTGTATAATTACAGA+TGG - chr5_4:60299239-60299258 Msa0861130:intron 25.0%
!!! TTATTTCCTCTGTTTTTCTA+TGG - chr5_4:60299417-60299436 Msa0861130:intron 25.0%
!!! TATTTCCTCTGTTTTTCTAT+GGG - chr5_4:60299418-60299437 Msa0861130:intron 25.0%
! GAAGGATCATATAAGTTTAA+GGG + chr5_4:60299543-60299562 None:intergenic 25.0%
! TGAAGGATCATATAAGTTTA+AGG + chr5_4:60299544-60299563 None:intergenic 25.0%
! TCAATTCAACAGGAAAAAAA+GGG + chr5_4:60300171-60300190 None:intergenic 25.0%
! TTCAATTCAACAGGAAAAAA+AGG + chr5_4:60300172-60300191 None:intergenic 25.0%
! CATTCAAAATTCAATTCAAC+AGG + chr5_4:60300181-60300200 None:intergenic 25.0%
!! CTGTTGAATTGAATTTTGAA+TGG - chr5_4:60300179-60300198 Msa0861130:intron 25.0%
!!! TTTTGAATGGTATTGACTAA+TGG - chr5_4:60300192-60300211 Msa0861130:intron 25.0%
!! ATGTAATTAGCTCTTGATAT+GGG + chr5_4:60300700-60300719 None:intergenic 25.0%
!! AATGTAATTAGCTCTTGATA+TGG + chr5_4:60300701-60300720 None:intergenic 25.0%
!!! GATGATTTTAGGAAGAAATT+TGG + chr5_4:60300742-60300761 None:intergenic 25.0%
!!! CATCTCTTATTGATGATTTT+AGG + chr5_4:60300753-60300772 None:intergenic 25.0%
!! CATATTATGAGATAATGGTT+TGG - chr5_4:60300904-60300923 Msa0861130:intron 25.0%
! GAATTCGTTAAGAAACATAT+TGG - chr5_4:60300997-60301016 Msa0861130:intron 25.0%
! TGTGGATTTACAATATATGA+AGG - chr5_4:60301059-60301078 Msa0861130:intron 25.0%
!! TACAATATATGAAGGTATAC+AGG - chr5_4:60301067-60301086 Msa0861130:intron 25.0%
!!! GGTATCATCAGTTTTATTTT+AGG - chr5_4:60301182-60301201 Msa0861130:intron 25.0%
! CATTTCAACAAAGGAATAAT+AGG + chr5_4:60301208-60301227 None:intergenic 25.0%
!! GTATTTAATTTCTCACCTTT+AGG + chr5_4:60301382-60301401 None:intergenic 25.0%
!! TTTTTCGTAAGAACTACTAT+CGG + chr5_4:60301537-60301556 None:intergenic 25.0%
! ACAATTTATGTGTTCTCAAA+AGG + chr5_4:60301576-60301595 None:intergenic 25.0%
! AAGTACCTTCAAAACAAAAA+AGG - chr5_4:60301635-60301654 Msa0861130:intron 25.0%
!!! TGATATTAGAGAAAGTATTG+AGG - chr5_4:60301672-60301691 Msa0861130:intron 25.0%
! ATAAACTTGTCATAACAATG+AGG + chr5_4:60301815-60301834 None:intergenic 25.0%
! AATATCAAGATCTATTTGCT+AGG + chr5_4:60301841-60301860 None:intergenic 25.0%
GATTGAATAACAGGGATAAA+AGG + chr5_4:60297821-60297840 None:intergenic 30.0%
GAAGTGAAGATTGAATAACA+GGG + chr5_4:60297829-60297848 None:intergenic 30.0%
AGAAGTGAAGATTGAATAAC+AGG + chr5_4:60297830-60297849 None:intergenic 30.0%
!!! GTTTTTCACCTATTTTGATC+AGG + chr5_4:60298287-60298306 None:intergenic 30.0%
ATTGTTGCTCATCATCATAA+GGG - chr5_4:60298339-60298358 Msa0861130:intron 30.0%
!!! TGCTTTTTCCGTTTTGAATT+AGG - chr5_4:60298405-60298424 Msa0861130:intron 30.0%
TCGATAATTTAAGAACGAAC+AGG + chr5_4:60298503-60298522 None:intergenic 30.0%
TTAACTACTTGTAGCATGTT+TGG + chr5_4:60298587-60298606 None:intergenic 30.0%
CATGCTACAAGTAGTTAAAT+AGG - chr5_4:60298589-60298608 Msa0861130:intron 30.0%
TGAATCTGATTTCAGTTTCT+GGG - chr5_4:60298688-60298707 Msa0861130:intron 30.0%
ATGCATCTTCTATAGCTATA+TGG - chr5_4:60298814-60298833 Msa0861130:intron 30.0%
CATAAAAATGACAAGCAAAG+AGG + chr5_4:60298860-60298879 None:intergenic 30.0%
!! TCTTGTTTCTCATTTTTCAC+TGG + chr5_4:60299033-60299052 None:intergenic 30.0%
ATCCATATTTGTCTGATTAC+AGG - chr5_4:60299061-60299080 Msa0861130:intron 30.0%
AACCTGTAATCAGACAAATA+TGG + chr5_4:60299066-60299085 None:intergenic 30.0%
TATTGAAGTGGATAGAATTC+TGG - chr5_4:60299214-60299233 Msa0861130:intron 30.0%
AGATGGAAACTTAACCAAAT+CGG - chr5_4:60299256-60299275 Msa0861130:intron 30.0%
! TTTTAAACTCTACTAGCACT+TGG + chr5_4:60299518-60299537 None:intergenic 30.0%
CAGAATTCATTGTTACTAGA+TGG - chr5_4:60299892-60299911 Msa0861130:intron 30.0%
ATTCATTGTTACTAGATGGA+AGG - chr5_4:60299896-60299915 Msa0861130:intron 30.0%
TTTGGTCATACATCAAACTA+AGG - chr5_4:60300025-60300044 Msa0861130:intron 30.0%
! TAATGGTTTTCAATGAATGC+AGG - chr5_4:60300209-60300228 Msa0861130:intron 30.0%
TAAGAATGAGACAGATGAAA+TGG - chr5_4:60300422-60300441 Msa0861130:intron 30.0%
AAGTTCATAAAGAATACTGG+CGG - chr5_4:60300513-60300532 Msa0861130:CDS 30.0%
ATCATTAGAGGAAAGATAAC+AGG + chr5_4:60300606-60300625 None:intergenic 30.0%
ATCTTTCCTCTAATGATTCA+CGG - chr5_4:60300609-60300628 Msa0861130:intron 30.0%
CAAATGTAACTTAAACAGCT+GGG - chr5_4:60300831-60300850 Msa0861130:intron 30.0%
TGATTAAGTTTCTACTTTGC+AGG - chr5_4:60300969-60300988 Msa0861130:intron 30.0%
TTCGTTAAGAAACATATTGG+AGG - chr5_4:60301000-60301019 Msa0861130:intron 30.0%
TATGGTCATCTGTAAATTCT+TGG - chr5_4:60301161-60301180 Msa0861130:intron 30.0%
GCAATGAAACATTTCAACAA+AGG + chr5_4:60301217-60301236 None:intergenic 30.0%
TCAACAATCAAAGTTAAGAC+AGG + chr5_4:60301239-60301258 None:intergenic 30.0%
CTTTCAATAGATGAGAAACA+AGG - chr5_4:60301431-60301450 Msa0861130:intron 30.0%
!! ATAGTTGGTTTCTGGTTATA+CGG - chr5_4:60301456-60301475 Msa0861130:intron 30.0%
CTGGAAAGAATCAATAAACA+AGG + chr5_4:60301483-60301502 None:intergenic 30.0%
ACTACTATCGGACATTTATA+AGG + chr5_4:60301525-60301544 None:intergenic 30.0%
! CTCTTTCAAGTATTCCACTT+TGG + chr5_4:60297676-60297695 None:intergenic 35.0%
GTATTTCATGTCTACCATGT+TGG - chr5_4:60297950-60297969 Msa0861130:intron 35.0%
!! AAATCTTTAAAGCACGGACA+TGG - chr5_4:60298027-60298046 Msa0861130:intron 35.0%
ATACATGTCAGTATCGTGTT+CGG + chr5_4:60298056-60298075 None:intergenic 35.0%
AACACGATACTGACATGTAT+CGG - chr5_4:60298056-60298075 Msa0861130:intron 35.0%
GAAATGAAGATGCACAATCA+TGG - chr5_4:60298175-60298194 Msa0861130:CDS 35.0%
! TCTCTTTTCTACAACCTAGT+GGG + chr5_4:60298234-60298253 None:intergenic 35.0%
AGAATGACCCTGATCAAAAT+AGG - chr5_4:60298276-60298295 Msa0861130:intron 35.0%
GATTGTTGCTCATCATCATA+AGG - chr5_4:60298338-60298357 Msa0861130:intron 35.0%
! ATCATAAGGGTATGTTTGCA+TGG - chr5_4:60298352-60298371 Msa0861130:intron 35.0%
ATAAAAATGACCAAGGCATG+AGG - chr5_4:60298445-60298464 Msa0861130:intron 35.0%
ACTGAAATCAGATTCACTGA+AGG + chr5_4:60298684-60298703 None:intergenic 35.0%
GTGAATCTGATTTCAGTTTC+TGG - chr5_4:60298687-60298706 Msa0861130:intron 35.0%
CATAACAGAATCTTGCATTG+AGG + chr5_4:60298722-60298741 None:intergenic 35.0%
ACCAAGCATAGGTGTTTAAT+CGG + chr5_4:60298748-60298767 None:intergenic 35.0%
!!! TGGTCCAGAAATTTTAGAAC+TGG + chr5_4:60298894-60298913 None:intergenic 35.0%
! TAAACCTTTTGTGTGTTTGC+AGG - chr5_4:60299185-60299204 Msa0861130:intron 35.0%
TGCAGGTTTGAATATTGAAG+TGG - chr5_4:60299202-60299221 Msa0861130:intron 35.0%
! AATATATACCTCCACCGATT+TGG + chr5_4:60299273-60299292 None:intergenic 35.0%
! CTAGTATCTTCCTCCTTTTT+AGG - chr5_4:60299393-60299412 Msa0861130:intron 35.0%
AGGAAATAAGCCTAAAAAGG+AGG + chr5_4:60299406-60299425 None:intergenic 35.0%
CAGAGGAAATAAGCCTAAAA+AGG + chr5_4:60299409-60299428 None:intergenic 35.0%
! GTTTTCCCATAGAAAAACAG+AGG + chr5_4:60299426-60299445 None:intergenic 35.0%
TCTTGAAGAGTTAATCGAGA+AGG - chr5_4:60299732-60299751 Msa0861130:intron 35.0%
CTTGAAGAGTTAATCGAGAA+GGG - chr5_4:60299733-60299752 Msa0861130:intron 35.0%
!!! TCTATTTTAGGGTCCTGATT+TGG - chr5_4:60300007-60300026 Msa0861130:intron 35.0%
GTTTGATGTATGACCAAATC+AGG + chr5_4:60300023-60300042 None:intergenic 35.0%
GAATGCAGGCTTAACAAAAA+AGG - chr5_4:60300223-60300242 Msa0861130:intron 35.0%
AGTTCATAAAGAATACTGGC+GGG - chr5_4:60300514-60300533 Msa0861130:CDS 35.0%
AAGATAACAGGTTCTGTGAT+AGG + chr5_4:60300594-60300613 None:intergenic 35.0%
TTGCAAACACTTAACAGCTA+TGG + chr5_4:60300814-60300833 None:intergenic 35.0%
GCAAATGTAACTTAAACAGC+TGG - chr5_4:60300830-60300849 Msa0861130:intron 35.0%
!! TGACATCATTGGCTTGATAT+AGG + chr5_4:60300872-60300891 None:intergenic 35.0%
TTTGCAATGACTGACATCAT+TGG + chr5_4:60300883-60300902 None:intergenic 35.0%
GCAGAAATACATGCCAAAAT+TGG - chr5_4:60301291-60301310 Msa0861130:intron 35.0%
GAAATACATGCCAAAATTGG+CGG - chr5_4:60301294-60301313 Msa0861130:intron 35.0%
GTATAACCAGAAACCAACTA+TGG + chr5_4:60301457-60301476 None:intergenic 35.0%
!!! CTGTGCCTTTTTTGTTTTGA+AGG + chr5_4:60301643-60301662 None:intergenic 35.0%
CGTTATCATTTCTTGACCTT+TGG + chr5_4:60301730-60301749 None:intergenic 35.0%
!!! TGAAGTGTATTTTTGGCAGT+TGG - chr5_4:60301860-60301879 Msa0861130:five_prime_UTR 35.0%
TCAGAGTCAAAAGTGGTGAT+GGG + chr5_4:60297600-60297619 None:intergenic 40.0%
ACACGATACTGACATGTATC+GGG - chr5_4:60298057-60298076 Msa0861130:intron 40.0%
TTCCTCAACACACAAATCAC+AGG + chr5_4:60298158-60298177 None:intergenic 40.0%
GAAGATGCACAATCATGGTA+TGG - chr5_4:60298180-60298199 Msa0861130:CDS 40.0%
TTCTACAACCTAGTGGGATA+AGG + chr5_4:60298228-60298247 None:intergenic 40.0%
! CTCTCTTTTCTACAACCTAG+TGG + chr5_4:60298235-60298254 None:intergenic 40.0%
! ATAAGGGTATGTTTGCATGG+AGG - chr5_4:60298355-60298374 Msa0861130:intron 40.0%
! TAAGGGTATGTTTGCATGGA+GGG - chr5_4:60298356-60298375 Msa0861130:intron 40.0%
! TATGTTTGCATGGAGGGTTT+TGG - chr5_4:60298362-60298381 Msa0861130:intron 40.0%
ATGGAGGAGTTTGAAAGGAA+AGG + chr5_4:60298564-60298583 None:intergenic 40.0%
TTTGGATGGAGGAGTTTGAA+AGG + chr5_4:60298569-60298588 None:intergenic 40.0%
CTACTTGTAGCATGTTTGGA+TGG + chr5_4:60298583-60298602 None:intergenic 40.0%
AAGAGGTAACGCATAAGCAT+AGG + chr5_4:60298843-60298862 None:intergenic 40.0%
GCAGCTGCAATATACTTTCT+TGG - chr5_4:60298967-60298986 Msa0861130:intron 40.0%
! GCAATATACTTTCTTGGTGC+AGG - chr5_4:60298973-60298992 Msa0861130:intron 40.0%
! AGTGGTGGAAAGAAAGCTAA+TGG - chr5_4:60298997-60299016 Msa0861130:intron 40.0%
ATTACAGGTTACCTCTTGTC+TGG - chr5_4:60299076-60299095 Msa0861130:intron 40.0%
!! TGGATTGACTTGGAAATGAC+TGG - chr5_4:60299096-60299115 Msa0861130:intron 40.0%
!! AGAATGTGTTACTTCGAGAG+TGG - chr5_4:60299128-60299147 Msa0861130:intron 40.0%
GATCAGTGCATTGAAACTTC+TGG - chr5_4:60299161-60299180 Msa0861130:intron 40.0%
CAAACCTGCAAACACACAAA+AGG + chr5_4:60299192-60299211 None:intergenic 40.0%
TGGAAACTTAACCAAATCGG+TGG - chr5_4:60299259-60299278 Msa0861130:intron 40.0%
AAACTTAACCAAATCGGTGG+AGG - chr5_4:60299262-60299281 Msa0861130:CDS 40.0%
GAAGATTGTCTTCTTGCATC+AGG - chr5_4:60299334-60299353 Msa0861130:intron 40.0%
CTTACAAGCACCTAAATCTC+AGG + chr5_4:60299473-60299492 None:intergenic 40.0%
TGAAAGAGAAGCTGAAGAAC+AGG - chr5_4:60300265-60300284 Msa0861130:CDS 40.0%
CATCTATATGCAGAGATGCT+GGG + chr5_4:60300476-60300495 None:intergenic 40.0%
CAGCATCTCTGCATATAGAT+GGG - chr5_4:60300475-60300494 Msa0861130:CDS 40.0%
CTAACACCGTGAATCATTAG+AGG + chr5_4:60300618-60300637 None:intergenic 40.0%
CTTGATATGGGATCACAAAC+TGG + chr5_4:60300688-60300707 None:intergenic 40.0%
GATCGTTTCTCTACAGAATG+TGG - chr5_4:60300772-60300791 Msa0861130:intron 40.0%
!! CATTGGCTTGATATAGGAGT+AGG + chr5_4:60300866-60300885 None:intergenic 40.0%
AGGTACTTACAAACCTCTCT+TGG - chr5_4:60301020-60301039 Msa0861130:intron 40.0%
GGCAGGAAATTCGATATATG+TGG - chr5_4:60301041-60301060 Msa0861130:intron 40.0%
!! CATCGATTCACGTGTTGATA+TGG - chr5_4:60301143-60301162 Msa0861130:intron 40.0%
TGCGAAATCGAAGTAAAGAC+AGG + chr5_4:60301274-60301293 None:intergenic 40.0%
TTGAAAGACTATGCGCACTA+AGG + chr5_4:60301418-60301437 None:intergenic 40.0%
ATGAGAAACAAGGCCATAGT+TGG - chr5_4:60301441-60301460 Msa0861130:intron 40.0%
! ACAAAAAAGGCACAGAGCTT+TGG - chr5_4:60301648-60301667 Msa0861130:intron 40.0%
TGAGGAACTCAAGTACTACA+AGG - chr5_4:60301690-60301709 Msa0861130:intron 40.0%
!! AGTCAAAAGTGGTGATGGGT+GGG + chr5_4:60297596-60297615 None:intergenic 45.0%
CTCAGAGTCAAAAGTGGTGA+TGG + chr5_4:60297601-60297620 None:intergenic 45.0%
CACTCACTCAGAGTCAAAAG+TGG + chr5_4:60297607-60297626 None:intergenic 45.0%
GAAAAGAAACTGCGCCAAAG+TGG - chr5_4:60297659-60297678 Msa0861130:three_prime_UTR 45.0%
AGGAAGAGAAGGAGGTTGAA+TGG + chr5_4:60297780-60297799 None:intergenic 45.0%
ATACCAGAAGGAAGAGAAGG+AGG + chr5_4:60297788-60297807 None:intergenic 45.0%
AGCATACCAGAAGGAAGAGA+AGG + chr5_4:60297791-60297810 None:intergenic 45.0%
CACGATACTGACATGTATCG+GGG - chr5_4:60298058-60298077 Msa0861130:intron 45.0%
!! ATCTGAAGTGTCGATGCTAC+AGG - chr5_4:60298098-60298117 Msa0861130:intron 45.0%
!! TCTGAAGTGTCGATGCTACA+GGG - chr5_4:60298099-60298118 Msa0861130:intron 45.0%
! AGCCTGTGATTTGTGTGTTG+AGG - chr5_4:60298153-60298172 Msa0861130:intron 45.0%
!!! TTTGCATGGAGGGTTTTGGA+GGG - chr5_4:60298366-60298385 Msa0861130:intron 45.0%
TTTGGAGGGAAAGGAAAGGA+TGG - chr5_4:60298380-60298399 Msa0861130:intron 45.0%
AGCTTAATGTCCTCATGCCT+TGG + chr5_4:60298458-60298477 None:intergenic 45.0%
CTTGTAGCATGTTTGGATGG+AGG + chr5_4:60298580-60298599 None:intergenic 45.0%
TAAGTGTTCCAGAGCCTAAG+TGG - chr5_4:60298622-60298641 Msa0861130:intron 45.0%
AAGTGTTCCAGAGCCTAAGT+GGG - chr5_4:60298623-60298642 Msa0861130:intron 45.0%
GCCGATTAAACACCTATGCT+TGG - chr5_4:60298744-60298763 Msa0861130:intron 45.0%
ACTGATGACTCAACGACCAA+AGG + chr5_4:60298773-60298792 None:intergenic 45.0%
TCTGGACCAATGCTTACATG+TGG - chr5_4:60298905-60298924 Msa0861130:intron 45.0%
ACACAGCCACATGTAAGCAT+TGG + chr5_4:60298914-60298933 None:intergenic 45.0%
! TACTTTCTTGGTGCAGGTAG+TGG - chr5_4:60298979-60298998 Msa0861130:intron 45.0%
ACCTCTTGTCTGGATTGACT+TGG - chr5_4:60299086-60299105 Msa0861130:intron 45.0%
TCCAAGTCAATCCAGACAAG+AGG + chr5_4:60299090-60299109 None:intergenic 45.0%
GGAAGATACTAGCTAGAGAC+TGG + chr5_4:60299385-60299404 None:intergenic 45.0%
AAGCACCTAAATCTCAGGCA+AGG + chr5_4:60299468-60299487 None:intergenic 45.0%
! CACCCTTATTTGAAGGAGGA+GGG - chr5_4:60299840-60299859 Msa0861130:intron 45.0%
! ACCCTTATTTGAAGGAGGAG+GGG - chr5_4:60299841-60299860 Msa0861130:intron 45.0%
TCCCCTCCTCCTTCAAATAA+GGG + chr5_4:60299845-60299864 None:intergenic 45.0%
TTCCCCTCCTCCTTCAAATA+AGG + chr5_4:60299846-60299865 None:intergenic 45.0%
!! CAAACTAAGGAGTGCCTTGA+CGG - chr5_4:60300038-60300057 Msa0861130:intron 45.0%
!! AAACTAAGGAGTGCCTTGAC+GGG - chr5_4:60300039-60300058 Msa0861130:intron 45.0%
AAAAGTCATCACGCTGCTAG+TGG - chr5_4:60300077-60300096 Msa0861130:intron 45.0%
AGCACGTCAATCACATGGTA+TGG + chr5_4:60300306-60300325 None:intergenic 45.0%
! AAGAGAGCACGTCAATCACA+TGG + chr5_4:60300311-60300330 None:intergenic 45.0%
! ATTGACGTGCTCTCTTTTCG+TGG - chr5_4:60300315-60300334 Msa0861130:CDS 45.0%
! TTGACGTGCTCTCTTTTCGT+GGG - chr5_4:60300316-60300335 Msa0861130:CDS 45.0%
CCATCTATATGCAGAGATGC+TGG + chr5_4:60300477-60300496 None:intergenic 45.0%
CCAGCATCTCTGCATATAGA+TGG - chr5_4:60300474-60300493 Msa0861130:CDS 45.0%
TAAAGAATACTGGCGGGACT+CGG - chr5_4:60300520-60300539 Msa0861130:CDS 45.0%
GGTCCTTGTTAGAGAACTCT+TGG - chr5_4:60300541-60300560 Msa0861130:intron 45.0%
CCTTGTTAGAGAACTCTTGG+CGG - chr5_4:60300544-60300563 Msa0861130:intron 45.0%
AGGGACAGTGTACAGGAAAA+AGG + chr5_4:60300933-60300952 None:intergenic 45.0%
TCAGTTGCCTCACAGATCAA+GGG + chr5_4:60300952-60300971 None:intergenic 45.0%
ATCAGTTGCCTCACAGATCA+AGG + chr5_4:60300953-60300972 None:intergenic 45.0%
ACTTACAAACCTCTCTTGGC+AGG - chr5_4:60301024-60301043 Msa0861130:intron 45.0%
ATCGAATTTCCTGCCAAGAG+AGG + chr5_4:60301036-60301055 None:intergenic 45.0%
! GAGAAGATCTCCGCCAATTT+TGG + chr5_4:60301307-60301326 None:intergenic 45.0%
TGCATTCGCTGGTATCCTAA+AGG - chr5_4:60301364-60301383 Msa0861130:intron 45.0%
GCGCACTAAGGTTCATCATA+CGG + chr5_4:60301406-60301425 None:intergenic 45.0%
! ACAAGGCCATAGTTGGTTTC+TGG - chr5_4:60301448-60301467 Msa0861130:intron 45.0%
!! GGCGAACATTTTCAAGCCAA+AGG - chr5_4:60301711-60301730 Msa0861130:intron 45.0%
!! AAAGTGGTGATGGGTGGGTT+GGG + chr5_4:60297591-60297610 None:intergenic 50.0%
!! AAAAGTGGTGATGGGTGGGT+TGG + chr5_4:60297592-60297611 None:intergenic 50.0%
!! GAGTCAAAAGTGGTGATGGG+TGG + chr5_4:60297597-60297616 None:intergenic 50.0%
CAACCTCCTTCTCTTCCTTC+TGG - chr5_4:60297782-60297801 Msa0861130:intron 50.0%
GGGTAGAGTAGCATACCAGA+AGG + chr5_4:60297800-60297819 None:intergenic 50.0%
ACTGACATGTATCGGGGTAG+CGG - chr5_4:60298064-60298083 Msa0861130:intron 50.0%
! CAATCGAGCCTTATCCCACT+AGG - chr5_4:60298217-60298236 Msa0861130:CDS 50.0%
!! GTTTGCATGGAGGGTTTTGG+AGG - chr5_4:60298365-60298384 Msa0861130:intron 50.0%
!!! ATGGAGGGTTTTGGAGGGAA+AGG - chr5_4:60298371-60298390 Msa0861130:intron 50.0%
!!! GGGTTTTGGAGGGAAAGGAA+AGG - chr5_4:60298376-60298395 Msa0861130:intron 50.0%
AGTGTTCCAGAGCCTAAGTG+GGG - chr5_4:60298624-60298643 Msa0861130:intron 50.0%
TTCTTCCTGCATCCCCACTT+AGG + chr5_4:60298639-60298658 None:intergenic 50.0%
! CACCTATGCTTGGTAGCCTT+TGG - chr5_4:60298754-60298773 Msa0861130:intron 50.0%
GACCAAAGGCTACCAAGCAT+AGG + chr5_4:60298759-60298778 None:intergenic 50.0%
TGGTCGTTGAGTCATCAGTG+AGG - chr5_4:60298774-60298793 Msa0861130:intron 50.0%
! TTTCTTGGTGCAGGTAGTGG+TGG - chr5_4:60298982-60299001 Msa0861130:intron 50.0%
ACCTAAATCTCAGGCAAGGC+GGG + chr5_4:60299464-60299483 None:intergenic 50.0%
CACCTAAATCTCAGGCAAGG+CGG + chr5_4:60299465-60299484 None:intergenic 50.0%
! TCGCCTCCACCCTTATTTGA+AGG - chr5_4:60299833-60299852 Msa0861130:intron 50.0%
CCTCCTTCAAATAAGGGTGG+AGG + chr5_4:60299839-60299858 None:intergenic 50.0%
! CCTCCACCCTTATTTGAAGG+AGG - chr5_4:60299836-60299855 Msa0861130:intron 50.0%
CCTCCTCCTTCAAATAAGGG+TGG + chr5_4:60299842-60299861 None:intergenic 50.0%
! CCACCCTTATTTGAAGGAGG+AGG - chr5_4:60299839-60299858 Msa0861130:intron 50.0%
CCGCCAAGAGTTCTCTAACA+AGG + chr5_4:60300547-60300566 None:intergenic 50.0%
CAGATCAAGGGACAGTGTAC+AGG + chr5_4:60300940-60300959 None:intergenic 50.0%
ACACTGTCCCTTGATCTGTG+AGG - chr5_4:60300942-60300961 Msa0861130:intron 50.0%
TCTCAGCTCTTTGCATTCGC+TGG - chr5_4:60301353-60301372 Msa0861130:intron 50.0%
! TGGGTCGGGTCATGGGTTTT+GGG + chr5_4:60297567-60297586 None:intergenic 55.0%
! TTGGGTCGGGTCATGGGTTT+TGG + chr5_4:60297568-60297587 None:intergenic 55.0%
CTGACATGTATCGGGGTAGC+GGG - chr5_4:60298065-60298084 Msa0861130:intron 55.0%
!! ATCTCAGGCAAGGCGGGTTA+TGG + chr5_4:60299458-60299477 None:intergenic 55.0%
ACCCGCCTTGCCTGAGATTT+AGG - chr5_4:60299460-60299479 Msa0861130:CDS 55.0%
!! TAAGGAGTGCCTTGACGGGA+TGG - chr5_4:60300043-60300062 Msa0861130:intron 55.0%
!! AAGGAGTGCCTTGACGGGAT+GGG - chr5_4:60300044-60300063 Msa0861130:intron 55.0%
ACCATTCTCCCATCCCGTCA+AGG + chr5_4:60300055-60300074 None:intergenic 55.0%
GGCGGAGATCTTCTCTCATG+TGG - chr5_4:60301312-60301331 Msa0861130:intron 55.0%
!! GTTGGGTTGGGTCGGGTCAT+GGG + chr5_4:60297574-60297593 None:intergenic 60.0%
!! ATGGGTGGGTTGGGTTGGGT+CGG + chr5_4:60297582-60297601 None:intergenic 60.0%
!! GGTGATGGGTGGGTTGGGTT+GGG + chr5_4:60297586-60297605 None:intergenic 60.0%
!! TGGTGATGGGTGGGTTGGGT+TGG + chr5_4:60297587-60297606 None:intergenic 60.0%
CTGCATCCCCACTTAGGCTC+TGG + chr5_4:60298633-60298652 None:intergenic 60.0%
CAGAGCCTAAGTGGGGATGC+AGG - chr5_4:60298631-60298650 Msa0861130:intron 60.0%
GCCTTGACGGGATGGGAGAA+TGG - chr5_4:60300051-60300070 Msa0861130:intron 60.0%
!! GGTTGGGTTGGGTCGGGTCA+TGG + chr5_4:60297575-60297594 None:intergenic 65.0%
!! TGGGTGGGTTGGGTTGGGTC+GGG + chr5_4:60297581-60297600 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 60297519 60302027 60297519 ID=Msa0861130;Name=Msa0861130
chr5_4 mRNA 60297519 60302027 60297519 ID=Msa0861130-mRNA-1;Parent=Msa0861130;Name=Msa0861130-mRNA-1;_AED=0.11;_eAED=0.11;_QI=203|1|1|1|0.87|0.77|9|260|239
chr5_4 exon 60297519 60297763 60297519 ID=Msa0861130-mRNA-1:exon:18668;Parent=Msa0861130-mRNA-1
chr5_4 exon 60297787 60297920 60297787 ID=Msa0861130-mRNA-1:exon:18667;Parent=Msa0861130-mRNA-1
chr5_4 exon 60298161 60298251 60298161 ID=Msa0861130-mRNA-1:exon:18666;Parent=Msa0861130-mRNA-1
chr5_4 exon 60298466 60298555 60298466 ID=Msa0861130-mRNA-1:exon:18665;Parent=Msa0861130-mRNA-1
chr5_4 exon 60299260 60299315 60299260 ID=Msa0861130-mRNA-1:exon:18664;Parent=Msa0861130-mRNA-1
chr5_4 exon 60299448 60299529 60299448 ID=Msa0861130-mRNA-1:exon:18663;Parent=Msa0861130-mRNA-1
chr5_4 exon 60300263 60300339 60300263 ID=Msa0861130-mRNA-1:exon:18662;Parent=Msa0861130-mRNA-1
chr5_4 exon 60300429 60300551 60300429 ID=Msa0861130-mRNA-1:exon:18661;Parent=Msa0861130-mRNA-1
chr5_4 exon 60301743 60302027 60301743 ID=Msa0861130-mRNA-1:exon:18660;Parent=Msa0861130-mRNA-1
chr5_4 five_prime_UTR 60301825 60302027 60301825 ID=Msa0861130-mRNA-1:five_prime_utr;Parent=Msa0861130-mRNA-1
chr5_4 CDS 60301743 60301824 60301743 ID=Msa0861130-mRNA-1:cds;Parent=Msa0861130-mRNA-1
chr5_4 CDS 60300429 60300551 60300429 ID=Msa0861130-mRNA-1:cds;Parent=Msa0861130-mRNA-1
chr5_4 CDS 60300263 60300339 60300263 ID=Msa0861130-mRNA-1:cds;Parent=Msa0861130-mRNA-1
chr5_4 CDS 60299448 60299529 60299448 ID=Msa0861130-mRNA-1:cds;Parent=Msa0861130-mRNA-1
chr5_4 CDS 60299260 60299315 60299260 ID=Msa0861130-mRNA-1:cds;Parent=Msa0861130-mRNA-1
chr5_4 CDS 60298466 60298555 60298466 ID=Msa0861130-mRNA-1:cds;Parent=Msa0861130-mRNA-1
chr5_4 CDS 60298161 60298251 60298161 ID=Msa0861130-mRNA-1:cds;Parent=Msa0861130-mRNA-1
chr5_4 CDS 60297802 60297920 60297802 ID=Msa0861130-mRNA-1:cds;Parent=Msa0861130-mRNA-1
chr5_4 three_prime_UTR 60297787 60297801 60297787 ID=Msa0861130-mRNA-1:three_prime_utr;Parent=Msa0861130-mRNA-1
chr5_4 three_prime_UTR 60297519 60297763 60297519 ID=Msa0861130-mRNA-1:three_prime_utr;Parent=Msa0861130-mRNA-1
Gene Sequence

>Msa0861130

ATGGAAAAGCTTGTTAACTCTTTTTCGGTGTTAGAACTTGACGCTGACGATAACACCATTCAACCTCCTTCTCTTCCTTCTGGTAGTGGTGGAAAGAAAGCTAATGGCAAAGCTTTACCAGTGAAAAATGAGAAACAAGATCAACACAATCCATATTTGTCTGATTACAGGTTACCTCTTGTCTGGATTGACTTGGAAATGACTGGTTTGAATATTGAAGTGGATAGAATTCTGGAGATTGCTTGTATAATTACAGATGGAAACTTAACCAAATCGGTGGAGGGTCCTGATTTGGTCATACATCAAACTAAGGAGTGCCTTGACGGGATGGGAGAATGGTGTAAAAGTCATCACGCTGCTAGTGGCTTAACAAAAAAGGTTCTTCAAAGTACAATTAGTGAAAGAGAAGCTGAAGAACAGGTTATTGAATTCGTTAAGAAACATATTGGAGGTACTTACAAACCTCTCTTGGCAGGAAATTCGATATATGTGGATTTACAATATATGAAGAAATACATGCCAAAATTGGCGGAGATCTTCTCTCATGTGGTTGTTGATGTTAGTAGTATCTCAGCTCTTTGCATTCGCTGGTATCCTAAAGATCAGAAAAAAGTACCTTCAAAACAAAAAAGGCACAGAGCTTTGGATGATATTAGAGAAAGTATTGAGGAACTCAAGTACTACAAGGCGAACATTTTCAAGCCAAAGGTCAAGAAATGA

Protein sequence

>Msa0861130

MEKLVNSFSVLELDADDNTIQPPSLPSGSGGKKANGKALPVKNEKQDQHNPYLSDYRLPLVWIDLEMTGLNIEVDRILEIACIITDGNLTKSVEGPDLVIHQTKECLDGMGEWCKSHHAASGLTKKVLQSTISEREAEEQVIEFVKKHIGGTYKPLLAGNSIYVDLQYMKKYMPKLAEIFSHVVVDVSSISALCIRWYPKDQKKVPSKQKRHRALDDIRESIEELKYYKANIFKPKVKK*