Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442100 | XP_004499716.1 | 96.970 | 132 | 4 | 0 | 3 | 134 | 1 | 132 | 6.30e-90 | 266 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442100 | sp|A4FVI0|ZSWM7_DANRE | 36.923 | 130 | 74 | 4 | 9 | 133 | 8 | 134 | 2.00e-18 | 78.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442100 | A0A1S2Y5H0 | 96.970 | 132 | 4 | 0 | 3 | 134 | 1 | 132 | 3.01e-90 | 266 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040450 | Msa0442100 | 0.813241 | 2.827421e-51 | -8.615850e-47 |
| Msa0110970 | Msa0442100 | 0.806088 | 9.749577e-50 | -8.615850e-47 |
| Msa0394490 | Msa0442100 | 0.885578 | 7.204139e-72 | -8.615850e-47 |
| Msa0442100 | Msa0523460 | 0.800568 | 1.355752e-48 | -8.615850e-47 |
| Msa0442100 | Msa1082500 | 0.806309 | 8.758942e-50 | -8.615850e-47 |
| Msa0442100 | Msa1275360 | 0.801327 | 9.487488e-49 | -8.615850e-47 |
| Msa0442100 | Msa1345360 | 0.800160 | 1.641732e-48 | -8.615850e-47 |
| Msa0347770 | Msa0442100 | 0.913047 | 9.669324e-84 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442100 | MtrunA17_Chr3g0080161 | 96.970 | 132 | 4 | 0 | 3 | 134 | 1 | 132 | 1.22e-93 | 266 |
| Msa0442100 | MtrunA17_Chr4g0022281 | 94.286 | 35 | 2 | 0 | 31 | 65 | 8 | 42 | 1.13e-18 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442100 | AT4G33925.1 | 67.424 | 132 | 43 | 0 | 3 | 134 | 1 | 132 | 4.47e-64 | 191 |
| Msa0442100 | AT4G33925.2 | 66.387 | 119 | 40 | 0 | 3 | 121 | 1 | 119 | 9.84e-57 | 172 |
Find 25 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTGGAAGGTTTATCTTTC+AGG | 0.114852 | 3_3:-11336931 | Msa0442100:intron |
| AACAGATTACATTTCTTATT+TGG | 0.148809 | 3_3:-11337020 | Msa0442100:intron |
| AGAGGTGTTAAGAAGATTTC+TGG | 0.215942 | 3_3:-11336960 | Msa0442100:CDS |
| GCAAGACTCGCTGCATCATT+AGG | 0.352521 | 3_3:-11335939 | Msa0442100:CDS |
| GAAAATGAGTGCAAGTAGTT+TGG | 0.359981 | 3_3:-11337362 | Msa0442100:CDS |
| ATCATAGAAGAAAGAATAAC+AGG | 0.376490 | 3_3:+11336143 | None:intergenic |
| AAAACAAAGACTTTGCTTTG+TGG | 0.399607 | 3_3:-11335835 | Msa0442100:three_prime_UTR |
| TTTCAGCAAAACACAGATAC+TGG | 0.406479 | 3_3:+11336175 | None:intergenic |
| CTTATTTGGTAAGAACTTTG+AGG | 0.428015 | 3_3:-11337006 | Msa0442100:CDS |
| CTTAGGTTACAGGGGAATCC+AGG | 0.438788 | 3_3:-11336206 | Msa0442100:intron |
| TTATTTGGTAAGAACTTTGA+GGG | 0.454021 | 3_3:-11337005 | Msa0442100:CDS |
| GTTTGGTAGCAGATGAAGTG+TGG | 0.490865 | 3_3:-11337345 | Msa0442100:CDS |
| CTGAAAGATAAACCTTCCAC+TGG | 0.506282 | 3_3:+11336932 | None:intergenic |
| TGAGGGAGCTACTAGAATAG+TGG | 0.534495 | 3_3:-11336988 | Msa0442100:CDS |
| TCTATGATGTTGTCAACAGA+GGG | 0.540121 | 3_3:-11336128 | Msa0442100:CDS |
| TTCTATGATGTTGTCAACAG+AGG | 0.568989 | 3_3:-11336129 | Msa0442100:CDS |
| TTTCTGGTGACCCCAGTGGA+AGG | 0.592488 | 3_3:-11336944 | Msa0442100:CDS |
| CGAAGTCAAGGTATCTGATG+AGG | 0.606772 | 3_3:-11335907 | Msa0442100:CDS |
| TGAAAGATAAACCTTCCACT+GGG | 0.609527 | 3_3:+11336933 | None:intergenic |
| AGGATCATATGTCGAAGTCA+AGG | 0.611050 | 3_3:-11335919 | Msa0442100:CDS |
| CAAATTGAATTAACACACAC+AGG | 0.630226 | 3_3:-11337319 | Msa0442100:intron |
| AAGATTTCTGGTGACCCCAG+TGG | 0.679035 | 3_3:-11336948 | Msa0442100:CDS |
| ACTAGAATAGTGGATCAAAG+AGG | 0.694774 | 3_3:-11336978 | Msa0442100:CDS |
| CTATGATGTTGTCAACAGAG+GGG | 0.760944 | 3_3:-11336127 | Msa0442100:CDS |
| GAAAGATAAACCTTCCACTG+GGG | 0.779053 | 3_3:+11336934 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAAATTAAATCAAAAAAT+GGG | + | chr3_3:11335904-11335923 | None:intergenic | 10.0% |
| !! | ATTGAAATTAAATCAAAAAA+TGG | + | chr3_3:11335905-11335924 | None:intergenic | 10.0% |
| !! | ACAAAAATAATAAAGTAAAA+AGG | + | chr3_3:11336008-11336027 | None:intergenic | 10.0% |
| !! | TTGAAATTAAATCAAAAAAT+GGG | + | chr3_3:11335904-11335923 | None:intergenic | 10.0% |
| !! | ATTGAAATTAAATCAAAAAA+TGG | + | chr3_3:11335905-11335924 | None:intergenic | 10.0% |
| !! | ACAAAAATAATAAAGTAAAA+AGG | + | chr3_3:11336008-11336027 | None:intergenic | 10.0% |
| !! | AGTTAAAATCAATTATACTT+GGG | - | chr3_3:11336623-11336642 | Msa0442100:intron | 15.0% |
| !!! | AAAATTGATTTTGACATATT+TGG | + | chr3_3:11336661-11336680 | None:intergenic | 15.0% |
| !! | AGTTAAAATCAATTATACTT+GGG | - | chr3_3:11336623-11336642 | Msa0442100:intron | 15.0% |
| !!! | AAAATTGATTTTGACATATT+TGG | + | chr3_3:11336661-11336680 | None:intergenic | 15.0% |
| !!! | ATTAAATCAAAAAATGGGTT+TGG | + | chr3_3:11335899-11335918 | None:intergenic | 20.0% |
| !! | TTTCTTAACTAATATAGCAT+AGG | - | chr3_3:11336040-11336059 | Msa0442100:intron | 20.0% |
| !!! | TTTGAACTTTGTATTTTTGT+TGG | - | chr3_3:11336074-11336093 | Msa0442100:intron | 20.0% |
| !! | AACAGATTACATTTCTTATT+TGG | - | chr3_3:11336115-11336134 | Msa0442100:intron | 20.0% |
| !! | AAACAAACAAACAAAAACAA+AGG | + | chr3_3:11336263-11336282 | None:intergenic | 20.0% |
| !! | TCAATTGAATAGTTTAAACT+AGG | - | chr3_3:11336318-11336337 | Msa0442100:intron | 20.0% |
| !! | AGTTGAACAATAAATTATAG+AGG | - | chr3_3:11336558-11336577 | Msa0442100:intron | 20.0% |
| !! | GAGTTAAAATCAATTATACT+TGG | - | chr3_3:11336622-11336641 | Msa0442100:intron | 20.0% |
| !!! | ATCTTTTAGCTAATTATTAG+CGG | + | chr3_3:11336818-11336837 | None:intergenic | 20.0% |
| !! | AAAAATCGATCTAATTCTAA+TGG | + | chr3_3:11337415-11337434 | None:intergenic | 20.0% |
| !!! | ATTAAATCAAAAAATGGGTT+TGG | + | chr3_3:11335899-11335918 | None:intergenic | 20.0% |
| !! | TTTCTTAACTAATATAGCAT+AGG | - | chr3_3:11336040-11336059 | Msa0442100:intron | 20.0% |
| !!! | TTTGAACTTTGTATTTTTGT+TGG | - | chr3_3:11336074-11336093 | Msa0442100:intron | 20.0% |
| !! | AACAGATTACATTTCTTATT+TGG | - | chr3_3:11336115-11336134 | Msa0442100:intron | 20.0% |
| !! | AAACAAACAAACAAAAACAA+AGG | + | chr3_3:11336263-11336282 | None:intergenic | 20.0% |
| !! | TCAATTGAATAGTTTAAACT+AGG | - | chr3_3:11336318-11336337 | Msa0442100:intron | 20.0% |
| !! | AGTTGAACAATAAATTATAG+AGG | - | chr3_3:11336558-11336577 | Msa0442100:intron | 20.0% |
| !! | GAGTTAAAATCAATTATACT+TGG | - | chr3_3:11336622-11336641 | Msa0442100:intron | 20.0% |
| !!! | ATCTTTTAGCTAATTATTAG+CGG | + | chr3_3:11336818-11336837 | None:intergenic | 20.0% |
| !! | AAAAATCGATCTAATTCTAA+TGG | + | chr3_3:11337415-11337434 | None:intergenic | 20.0% |
| !! | AAAAAATGGGTTTGGAATTT+CGG | + | chr3_3:11335891-11335910 | None:intergenic | 25.0% |
| ! | TTATTTGGTAAGAACTTTGA+GGG | - | chr3_3:11336130-11336149 | Msa0442100:CDS | 25.0% |
| !!! | TCTTTTTCATTCAACAGATT+TGG | - | chr3_3:11336287-11336306 | Msa0442100:intron | 25.0% |
| !!! | CTTTTTCATTCAACAGATTT+GGG | - | chr3_3:11336288-11336307 | Msa0442100:intron | 25.0% |
| !! | TTTTTCATTCAACAGATTTG+GGG | - | chr3_3:11336289-11336308 | Msa0442100:intron | 25.0% |
| !!! | ATTTTGACATATTTGGACTT+CGG | + | chr3_3:11336654-11336673 | None:intergenic | 25.0% |
| ! | GAAAGTAATTAGTGTATGTT+TGG | + | chr3_3:11336722-11336741 | None:intergenic | 25.0% |
| !! | CAAATTTTCATTGCAATGTA+AGG | - | chr3_3:11336857-11336876 | Msa0442100:intron | 25.0% |
| ! | ATCATAGAAGAAAGAATAAC+AGG | + | chr3_3:11336995-11337014 | None:intergenic | 25.0% |
| ! | GAAGAAAATAAAAGACAATC+AGG | + | chr3_3:11337063-11337082 | None:intergenic | 25.0% |
| !! | TAAAAAGAGTGCAAATAGAT+TGG | - | chr3_3:11337357-11337376 | Msa0442100:CDS | 25.0% |
| !! | AAAAAATGGGTTTGGAATTT+CGG | + | chr3_3:11335891-11335910 | None:intergenic | 25.0% |
| ! | TTATTTGGTAAGAACTTTGA+GGG | - | chr3_3:11336130-11336149 | Msa0442100:CDS | 25.0% |
| !!! | TCTTTTTCATTCAACAGATT+TGG | - | chr3_3:11336287-11336306 | Msa0442100:intron | 25.0% |
| !!! | CTTTTTCATTCAACAGATTT+GGG | - | chr3_3:11336288-11336307 | Msa0442100:intron | 25.0% |
| !! | TTTTTCATTCAACAGATTTG+GGG | - | chr3_3:11336289-11336308 | Msa0442100:intron | 25.0% |
| !!! | ATTTTGACATATTTGGACTT+CGG | + | chr3_3:11336654-11336673 | None:intergenic | 25.0% |
| ! | GAAAGTAATTAGTGTATGTT+TGG | + | chr3_3:11336722-11336741 | None:intergenic | 25.0% |
| !! | CAAATTTTCATTGCAATGTA+AGG | - | chr3_3:11336857-11336876 | Msa0442100:intron | 25.0% |
| ! | ATCATAGAAGAAAGAATAAC+AGG | + | chr3_3:11336995-11337014 | None:intergenic | 25.0% |
| ! | GAAGAAAATAAAAGACAATC+AGG | + | chr3_3:11337063-11337082 | None:intergenic | 25.0% |
| !! | TAAAAAGAGTGCAAATAGAT+TGG | - | chr3_3:11337357-11337376 | Msa0442100:CDS | 25.0% |
| !! | AACATGTTCTGTTTTGTTGA+AGG | - | chr3_3:11335723-11335742 | Msa0442100:three_prime_UTR | 30.0% |
| CAAATTGAATTAACACACAC+AGG | - | chr3_3:11335816-11335835 | Msa0442100:three_prime_UTR | 30.0% | |
| TGTGACATGAAAATGAAAAG+GGG | + | chr3_3:11335947-11335966 | None:intergenic | 30.0% | |
| CTGTGACATGAAAATGAAAA+GGG | + | chr3_3:11335948-11335967 | None:intergenic | 30.0% | |
| ACTGTGACATGAAAATGAAA+AGG | + | chr3_3:11335949-11335968 | None:intergenic | 30.0% | |
| CTTATTTGGTAAGAACTTTG+AGG | - | chr3_3:11336129-11336148 | Msa0442100:CDS | 30.0% | |
| AACTTGAAGTCACAATTTAG+AGG | + | chr3_3:11336589-11336608 | None:intergenic | 30.0% | |
| ! | CTTCAAGTTAGAATCAAATC+TGG | - | chr3_3:11336600-11336619 | Msa0442100:intron | 30.0% |
| !! | GGAGTCAAAATTGTTTCTAA+CGG | + | chr3_3:11336687-11336706 | None:intergenic | 30.0% |
| CTAAAAGATAGTAATACTGC+AGG | - | chr3_3:11336829-11336848 | Msa0442100:intron | 30.0% | |
| CACATCACAATTTCAATCAA+GGG | + | chr3_3:11336894-11336913 | None:intergenic | 30.0% | |
| ! | TGCATATTCTCCATTTTCTT+AGG | - | chr3_3:11336912-11336931 | Msa0442100:intron | 30.0% |
| AAAACAAAGACTTTGCTTTG+TGG | - | chr3_3:11337300-11337319 | Msa0442100:intron | 30.0% | |
| ! | TCTATTTGCACTCTTTTTAC+AGG | + | chr3_3:11337356-11337375 | None:intergenic | 30.0% |
| CAACAAAACAGAACATGTTT+CGG | + | chr3_3:11335722-11335741 | None:intergenic | 30.0% | |
| !! | AACATGTTCTGTTTTGTTGA+AGG | - | chr3_3:11335723-11335742 | Msa0442100:three_prime_UTR | 30.0% |
| CAAATTGAATTAACACACAC+AGG | - | chr3_3:11335816-11335835 | Msa0442100:three_prime_UTR | 30.0% | |
| TGTGACATGAAAATGAAAAG+GGG | + | chr3_3:11335947-11335966 | None:intergenic | 30.0% | |
| CTGTGACATGAAAATGAAAA+GGG | + | chr3_3:11335948-11335967 | None:intergenic | 30.0% | |
| ACTGTGACATGAAAATGAAA+AGG | + | chr3_3:11335949-11335968 | None:intergenic | 30.0% | |
| CTTATTTGGTAAGAACTTTG+AGG | - | chr3_3:11336129-11336148 | Msa0442100:CDS | 30.0% | |
| AACTTGAAGTCACAATTTAG+AGG | + | chr3_3:11336589-11336608 | None:intergenic | 30.0% | |
| ! | CTTCAAGTTAGAATCAAATC+TGG | - | chr3_3:11336600-11336619 | Msa0442100:intron | 30.0% |
| !! | GGAGTCAAAATTGTTTCTAA+CGG | + | chr3_3:11336687-11336706 | None:intergenic | 30.0% |
| CTAAAAGATAGTAATACTGC+AGG | - | chr3_3:11336829-11336848 | Msa0442100:intron | 30.0% | |
| CACATCACAATTTCAATCAA+GGG | + | chr3_3:11336894-11336913 | None:intergenic | 30.0% | |
| ! | TGCATATTCTCCATTTTCTT+AGG | - | chr3_3:11336912-11336931 | Msa0442100:intron | 30.0% |
| AAAACAAAGACTTTGCTTTG+TGG | - | chr3_3:11337300-11337319 | Msa0442100:intron | 30.0% | |
| ! | TCTATTTGCACTCTTTTTAC+AGG | + | chr3_3:11337356-11337375 | None:intergenic | 30.0% |
| GAAAATGAGTGCAAGTAGTT+TGG | - | chr3_3:11335773-11335792 | Msa0442100:three_prime_UTR | 35.0% | |
| !! | ACTAGAATAGTGGATCAAAG+AGG | - | chr3_3:11336157-11336176 | Msa0442100:CDS | 35.0% |
| !! | AGAGGTGTTAAGAAGATTTC+TGG | - | chr3_3:11336175-11336194 | Msa0442100:CDS | 35.0% |
| TGAAAGATAAACCTTCCACT+GGG | + | chr3_3:11336205-11336224 | None:intergenic | 35.0% | |
| AGGTAAATGCAAAGAAAGAG+TGG | + | chr3_3:11336243-11336262 | None:intergenic | 35.0% | |
| ! | ATGCCTTCAATCAAAAGTGT+CGG | + | chr3_3:11336410-11336429 | None:intergenic | 35.0% |
| GCACATCACAATTTCAATCA+AGG | + | chr3_3:11336895-11336914 | None:intergenic | 35.0% | |
| ! | TCTCCATTTTCTTAGGTTAC+AGG | - | chr3_3:11336919-11336938 | Msa0442100:intron | 35.0% |
| ! | CTCCATTTTCTTAGGTTACA+GGG | - | chr3_3:11336920-11336939 | Msa0442100:intron | 35.0% |
| ! | TCCATTTTCTTAGGTTACAG+GGG | - | chr3_3:11336921-11336940 | Msa0442100:intron | 35.0% |
| TTTCAGCAAAACACAGATAC+TGG | + | chr3_3:11336963-11336982 | None:intergenic | 35.0% | |
| TTCTATGATGTTGTCAACAG+AGG | - | chr3_3:11337006-11337025 | Msa0442100:CDS | 35.0% | |
| TCTATGATGTTGTCAACAGA+GGG | - | chr3_3:11337007-11337026 | Msa0442100:CDS | 35.0% | |
| ! | AGACAATCAGGAAGTGTATA+TGG | + | chr3_3:11337051-11337070 | None:intergenic | 35.0% |
| GAAAATGAGTGCAAGTAGTT+TGG | - | chr3_3:11335773-11335792 | Msa0442100:three_prime_UTR | 35.0% | |
| !! | ACTAGAATAGTGGATCAAAG+AGG | - | chr3_3:11336157-11336176 | Msa0442100:CDS | 35.0% |
| !! | AGAGGTGTTAAGAAGATTTC+TGG | - | chr3_3:11336175-11336194 | Msa0442100:CDS | 35.0% |
| TGAAAGATAAACCTTCCACT+GGG | + | chr3_3:11336205-11336224 | None:intergenic | 35.0% | |
| AGGTAAATGCAAAGAAAGAG+TGG | + | chr3_3:11336243-11336262 | None:intergenic | 35.0% | |
| ! | ATGCCTTCAATCAAAAGTGT+CGG | + | chr3_3:11336410-11336429 | None:intergenic | 35.0% |
| GCACATCACAATTTCAATCA+AGG | + | chr3_3:11336895-11336914 | None:intergenic | 35.0% | |
| ! | TCTCCATTTTCTTAGGTTAC+AGG | - | chr3_3:11336919-11336938 | Msa0442100:intron | 35.0% |
| ! | CTCCATTTTCTTAGGTTACA+GGG | - | chr3_3:11336920-11336939 | Msa0442100:intron | 35.0% |
| ! | TCCATTTTCTTAGGTTACAG+GGG | - | chr3_3:11336921-11336940 | Msa0442100:intron | 35.0% |
| TTTCAGCAAAACACAGATAC+TGG | + | chr3_3:11336963-11336982 | None:intergenic | 35.0% | |
| TTCTATGATGTTGTCAACAG+AGG | - | chr3_3:11337006-11337025 | Msa0442100:CDS | 35.0% | |
| TCTATGATGTTGTCAACAGA+GGG | - | chr3_3:11337007-11337026 | Msa0442100:CDS | 35.0% | |
| ! | AGACAATCAGGAAGTGTATA+TGG | + | chr3_3:11337051-11337070 | None:intergenic | 35.0% |
| GAAAGATAAACCTTCCACTG+GGG | + | chr3_3:11336204-11336223 | None:intergenic | 40.0% | |
| CTGAAAGATAAACCTTCCAC+TGG | + | chr3_3:11336206-11336225 | None:intergenic | 40.0% | |
| CAGTGGAAGGTTTATCTTTC+AGG | - | chr3_3:11336204-11336223 | Msa0442100:CDS | 40.0% | |
| GTGTCAAACACGAACATATG+TGG | - | chr3_3:11336452-11336471 | Msa0442100:intron | 40.0% | |
| !!! | CAATTTTGACTCCTCCAAAG+TGG | - | chr3_3:11336694-11336713 | Msa0442100:intron | 40.0% |
| ! | TATGTTTGGTTCCACTTTGG+AGG | + | chr3_3:11336708-11336727 | None:intergenic | 40.0% |
| ! | GTGTATGTTTGGTTCCACTT+TGG | + | chr3_3:11336711-11336730 | None:intergenic | 40.0% |
| GTCTGTTGTATCTGCTTCAT+TGG | - | chr3_3:11336789-11336808 | Msa0442100:intron | 40.0% | |
| TCCCCTGTAACCTAAGAAAA+TGG | + | chr3_3:11336925-11336944 | None:intergenic | 40.0% | |
| !!! | CAGATACTGGTCTTTTTTCC+TGG | + | chr3_3:11336950-11336969 | None:intergenic | 40.0% |
| CTATGATGTTGTCAACAGAG+GGG | - | chr3_3:11337008-11337027 | Msa0442100:CDS | 40.0% | |
| TCAGCACTAGAACGATACTA+AGG | + | chr3_3:11337108-11337127 | None:intergenic | 40.0% | |
| AGGATCATATGTCGAAGTCA+AGG | - | chr3_3:11337216-11337235 | Msa0442100:intron | 40.0% | |
| GAAAGATAAACCTTCCACTG+GGG | + | chr3_3:11336204-11336223 | None:intergenic | 40.0% | |
| CTGAAAGATAAACCTTCCAC+TGG | + | chr3_3:11336206-11336225 | None:intergenic | 40.0% | |
| CAGTGGAAGGTTTATCTTTC+AGG | - | chr3_3:11336204-11336223 | Msa0442100:CDS | 40.0% | |
| GTGTCAAACACGAACATATG+TGG | - | chr3_3:11336452-11336471 | Msa0442100:intron | 40.0% | |
| !!! | CAATTTTGACTCCTCCAAAG+TGG | - | chr3_3:11336694-11336713 | Msa0442100:intron | 40.0% |
| ! | TATGTTTGGTTCCACTTTGG+AGG | + | chr3_3:11336708-11336727 | None:intergenic | 40.0% |
| ! | GTGTATGTTTGGTTCCACTT+TGG | + | chr3_3:11336711-11336730 | None:intergenic | 40.0% |
| GTCTGTTGTATCTGCTTCAT+TGG | - | chr3_3:11336789-11336808 | Msa0442100:intron | 40.0% | |
| TCCCCTGTAACCTAAGAAAA+TGG | + | chr3_3:11336925-11336944 | None:intergenic | 40.0% | |
| !!! | CAGATACTGGTCTTTTTTCC+TGG | + | chr3_3:11336950-11336969 | None:intergenic | 40.0% |
| CTATGATGTTGTCAACAGAG+GGG | - | chr3_3:11337008-11337027 | Msa0442100:CDS | 40.0% | |
| TCAGCACTAGAACGATACTA+AGG | + | chr3_3:11337108-11337127 | None:intergenic | 40.0% | |
| AGGATCATATGTCGAAGTCA+AGG | - | chr3_3:11337216-11337235 | Msa0442100:intron | 40.0% | |
| ! | GTTTGGTAGCAGATGAAGTG+TGG | - | chr3_3:11335790-11335809 | Msa0442100:three_prime_UTR | 45.0% |
| TGAGGGAGCTACTAGAATAG+TGG | - | chr3_3:11336147-11336166 | Msa0442100:CDS | 45.0% | |
| !! | GCACCGACACTTTTGATTGA+AGG | - | chr3_3:11336404-11336423 | Msa0442100:intron | 45.0% |
| ATGTTCGTGTTTGACACCGA+CGG | + | chr3_3:11336449-11336468 | None:intergenic | 45.0% | |
| ! | CGAAGTCAAGGTATCTGATG+AGG | - | chr3_3:11337228-11337247 | Msa0442100:intron | 45.0% |
| ! | GTTTGGTAGCAGATGAAGTG+TGG | - | chr3_3:11335790-11335809 | Msa0442100:three_prime_UTR | 45.0% |
| TGAGGGAGCTACTAGAATAG+TGG | - | chr3_3:11336147-11336166 | Msa0442100:CDS | 45.0% | |
| !! | GCACCGACACTTTTGATTGA+AGG | - | chr3_3:11336404-11336423 | Msa0442100:intron | 45.0% |
| ATGTTCGTGTTTGACACCGA+CGG | + | chr3_3:11336449-11336468 | None:intergenic | 45.0% | |
| ! | CGAAGTCAAGGTATCTGATG+AGG | - | chr3_3:11337228-11337247 | Msa0442100:intron | 45.0% |
| !! | TTTCTTAATAAAAAATAAAA+GGG | + | chr3_3:11337283-11337302 | None:intergenic | 5.0% |
| !!! | TTTTCTTAATAAAAAATAAA+AGG | + | chr3_3:11337284-11337303 | None:intergenic | 5.0% |
| !! | TTTCTTAATAAAAAATAAAA+GGG | + | chr3_3:11337283-11337302 | None:intergenic | 5.0% |
| !!! | TTTTCTTAATAAAAAATAAA+AGG | + | chr3_3:11337284-11337303 | None:intergenic | 5.0% |
| !! | AAGATTTCTGGTGACCCCAG+TGG | - | chr3_3:11336187-11336206 | Msa0442100:CDS | 50.0% |
| TGTTCGTGTTTGACACCGAC+GGG | + | chr3_3:11336448-11336467 | None:intergenic | 50.0% | |
| CTTAGGTTACAGGGGAATCC+AGG | - | chr3_3:11336929-11336948 | Msa0442100:intron | 50.0% | |
| GCAAGACTCGCTGCATCATT+AGG | - | chr3_3:11337196-11337215 | Msa0442100:intron | 50.0% | |
| !! | AAGATTTCTGGTGACCCCAG+TGG | - | chr3_3:11336187-11336206 | Msa0442100:CDS | 50.0% |
| TGTTCGTGTTTGACACCGAC+GGG | + | chr3_3:11336448-11336467 | None:intergenic | 50.0% | |
| CTTAGGTTACAGGGGAATCC+AGG | - | chr3_3:11336929-11336948 | Msa0442100:intron | 50.0% | |
| GCAAGACTCGCTGCATCATT+AGG | - | chr3_3:11337196-11337215 | Msa0442100:intron | 50.0% | |
| ! | TTTCTGGTGACCCCAGTGGA+AGG | - | chr3_3:11336191-11336210 | Msa0442100:CDS | 55.0% |
| TGTTTGACACCGACGGGTGT+CGG | + | chr3_3:11336442-11336461 | None:intergenic | 55.0% | |
| ! | TTTCTGGTGACCCCAGTGGA+AGG | - | chr3_3:11336191-11336210 | Msa0442100:CDS | 55.0% |
| TGTTTGACACCGACGGGTGT+CGG | + | chr3_3:11336442-11336461 | None:intergenic | 55.0% | |
| GTCAAGTGTCCGACACCCGT+CGG | - | chr3_3:11336430-11336449 | Msa0442100:intron | 60.0% | |
| GTCAAGTGTCCGACACCCGT+CGG | - | chr3_3:11336430-11336449 | Msa0442100:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 11335721 | 11337436 | 11335721 | ID=Msa0442100;Name=Msa0442100 |
| chr3_3 | mRNA | 11335721 | 11337436 | 11335721 | ID=Msa0442100-mRNA-1;Parent=Msa0442100;Name=Msa0442100-mRNA-1;_AED=0.10;_eAED=0.10;_QI=50|1|1|1|0|0|5|157|134 |
| chr3_3 | exon | 11335721 | 11335979 | 11335721 | ID=Msa0442100-mRNA-1:exon:2401;Parent=Msa0442100-mRNA-1 |
| chr3_3 | exon | 11336116 | 11336223 | 11336116 | ID=Msa0442100-mRNA-1:exon:2400;Parent=Msa0442100-mRNA-1 |
| chr3_3 | exon | 11336932 | 11337037 | 11336932 | ID=Msa0442100-mRNA-1:exon:2399;Parent=Msa0442100-mRNA-1 |
| chr3_3 | exon | 11337168 | 11337189 | 11337168 | ID=Msa0442100-mRNA-1:exon:2398;Parent=Msa0442100-mRNA-1 |
| chr3_3 | exon | 11337320 | 11337436 | 11337320 | ID=Msa0442100-mRNA-1:exon:2397;Parent=Msa0442100-mRNA-1 |
| chr3_3 | five_prime_UTR | 11337387 | 11337436 | 11337387 | ID=Msa0442100-mRNA-1:five_prime_utr;Parent=Msa0442100-mRNA-1 |
| chr3_3 | CDS | 11337320 | 11337386 | 11337320 | ID=Msa0442100-mRNA-1:cds;Parent=Msa0442100-mRNA-1 |
| chr3_3 | CDS | 11337168 | 11337189 | 11337168 | ID=Msa0442100-mRNA-1:cds;Parent=Msa0442100-mRNA-1 |
| chr3_3 | CDS | 11336932 | 11337037 | 11336932 | ID=Msa0442100-mRNA-1:cds;Parent=Msa0442100-mRNA-1 |
| chr3_3 | CDS | 11336116 | 11336223 | 11336116 | ID=Msa0442100-mRNA-1:cds;Parent=Msa0442100-mRNA-1 |
| chr3_3 | CDS | 11335878 | 11335979 | 11335878 | ID=Msa0442100-mRNA-1:cds;Parent=Msa0442100-mRNA-1 |
| chr3_3 | three_prime_UTR | 11335721 | 11335877 | 11335721 | ID=Msa0442100-mRNA-1:three_prime_utr;Parent=Msa0442100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
