AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0523460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0523460 MtrunA17_Chr3g0143931 93.000 100 7 0 2 101 1188 1287 1.11e-56 187
Msa0523460 MtrunA17_Chr5g0448641 80.247 81 16 0 8 88 1220 1300 7.40e-39 137
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0523460 AT1G42470.1 70.526 95 28 0 7 101 1164 1258 2.33e-39 139
Msa0523460 AT4G38350.1 65.957 94 32 0 8 101 1177 1270 1.08e-38 137
Msa0523460 AT4G38350.2 65.957 94 32 0 8 101 1201 1294 1.10e-38 137

Find 24 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTGTCATTAGTACTTCT+TGG 0.230682 3_4:+76803084 Msa0523460:CDS
ATTTATGTACCATGCTTAAA+AGG 0.231437 3_4:+76802336 None:intergenic
CAACCCATCATCCAATGCTT+TGG 0.378610 3_4:-76803911 None:intergenic
TTAATTACAAATAACAATAT+CGG 0.382227 3_4:-76804057 None:intergenic
CAGGTGGTATTAAGCATGTT+TGG 0.397413 3_4:+76803820 Msa0523460:intron
TCAGTATTTGTACATCTTGA+AGG 0.438461 3_4:-76803847 None:intergenic
TAAACCAAAGCATTGGATGA+TGG 0.470478 3_4:+76803907 Msa0523460:three_prime_UTR
AAGGAGGCTCTAGGTACAAT+GGG 0.471534 3_4:+76802531 Msa0523460:CDS
AAACCAAAGCATTGGATGAT+GGG 0.489129 3_4:+76803908 Msa0523460:three_prime_UTR
GAATAAAGATCAGCGTGTTA+AGG 0.489480 3_4:+76802512 Msa0523460:CDS
TTGATGAACGATCTTCCTCT+TGG 0.512322 3_4:-76803870 None:intergenic
AAAACATAGGCAATATAGAA+AGG 0.515834 3_4:+76803972 Msa0523460:three_prime_UTR
GTAGCTATAAACCAAAGCAT+TGG 0.538230 3_4:+76803900 Msa0523460:exon
CAGCGTGTTAAGGAGGCTCT+AGG 0.560441 3_4:+76802522 Msa0523460:CDS
ATCTTACTGCAGGTTGCAAG+TGG 0.562911 3_4:+76802489 Msa0523460:intron
ATCACACTAACAAAGTTGGT+TGG 0.563191 3_4:+76802921 Msa0523460:CDS
TGGTATCACACTAACAAAGT+TGG 0.606805 3_4:+76802917 Msa0523460:CDS
TAAGGAGGCTCTAGGTACAA+TGG 0.613326 3_4:+76802530 Msa0523460:CDS
TAAAGATCAGCGTGTTAAGG+AGG 0.613747 3_4:+76802515 Msa0523460:CDS
ATGTACAAATACTGACCAAG+AGG 0.619169 3_4:+76803855 Msa0523460:CDS
GTATTTGTACATCTTGAAGG+TGG 0.631558 3_4:-76803844 None:intergenic
TCTTACTGCAGGTTGCAAGT+GGG 0.668401 3_4:+76802490 Msa0523460:intron
AGGAGGCTCTAGGTACAATG+GGG 0.725195 3_4:+76802532 Msa0523460:CDS
GGAGGCTCTAGGTACAATGG+GGG 0.771313 3_4:+76802533 Msa0523460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTACAAATAACAATAT+CGG - chr3_4:76804060-76804079 None:intergenic 10.0%
!! TTAATTACAAATAACAATAT+CGG - chr3_4:76804060-76804079 None:intergenic 10.0%
!!! CTTATGATTTTTATTGATTT+AGG - chr3_4:76803398-76803417 None:intergenic 15.0%
!!! TTTTAACAAAATTCTATTGT+CGG + chr3_4:76803594-76803613 Msa0523460:intron 15.0%
!! AAAGTACAAAAAAAAAACAT+AGG + chr3_4:76803959-76803978 Msa0523460:three_prime_UTR 15.0%
!!! CTTATGATTTTTATTGATTT+AGG - chr3_4:76803398-76803417 None:intergenic 15.0%
!!! TTTTAACAAAATTCTATTGT+CGG + chr3_4:76803594-76803613 Msa0523460:intron 15.0%
!! AAAGTACAAAAAAAAAACAT+AGG + chr3_4:76803959-76803978 Msa0523460:three_prime_UTR 15.0%
!! AATAGACAATATGTTTATAC+AGG - chr3_4:76802583-76802602 None:intergenic 20.0%
!! TAAAGGAAAAAATGAACAAT+AGG + chr3_4:76802685-76802704 Msa0523460:intron 20.0%
!!! AAATTTAAGGCAACAATATA+TGG - chr3_4:76802851-76802870 None:intergenic 20.0%
!! AGAAACCTTACTTAAATTTA+AGG - chr3_4:76802864-76802883 None:intergenic 20.0%
!! ATTAAGATAATATCACTAAC+CGG - chr3_4:76803135-76803154 None:intergenic 20.0%
!! AAATACTAATCCCTATTTAT+AGG + chr3_4:76803356-76803375 Msa0523460:intron 20.0%
!! AATACTAATCCCTATTTATA+GGG + chr3_4:76803357-76803376 Msa0523460:intron 20.0%
!! TCTATTCATAGAATACTTTA+CGG + chr3_4:76803454-76803473 Msa0523460:intron 20.0%
!!! TCATTATTAAAAGCACTAAT+GGG - chr3_4:76803640-76803659 None:intergenic 20.0%
!!! ATCATTATTAAAAGCACTAA+TGG - chr3_4:76803641-76803660 None:intergenic 20.0%
!! AATAGACAATATGTTTATAC+AGG - chr3_4:76802583-76802602 None:intergenic 20.0%
!! TAAAGGAAAAAATGAACAAT+AGG + chr3_4:76802685-76802704 Msa0523460:intron 20.0%
!!! AAATTTAAGGCAACAATATA+TGG - chr3_4:76802851-76802870 None:intergenic 20.0%
!! AGAAACCTTACTTAAATTTA+AGG - chr3_4:76802864-76802883 None:intergenic 20.0%
!! ATTAAGATAATATCACTAAC+CGG - chr3_4:76803135-76803154 None:intergenic 20.0%
!! AAATACTAATCCCTATTTAT+AGG + chr3_4:76803356-76803375 Msa0523460:intron 20.0%
!! AATACTAATCCCTATTTATA+GGG + chr3_4:76803357-76803376 Msa0523460:intron 20.0%
!! TCTATTCATAGAATACTTTA+CGG + chr3_4:76803454-76803473 Msa0523460:intron 20.0%
!!! TCATTATTAAAAGCACTAAT+GGG - chr3_4:76803640-76803659 None:intergenic 20.0%
!!! ATCATTATTAAAAGCACTAA+TGG - chr3_4:76803641-76803660 None:intergenic 20.0%
!!! CATTTTTTCCTTTAGAGAAT+TGG - chr3_4:76802679-76802698 None:intergenic 25.0%
! AAAAATGAACAATAGGTTCA+TGG + chr3_4:76802692-76802711 Msa0523460:intron 25.0%
! AAAATGAACAATAGGTTCAT+GGG + chr3_4:76802693-76802712 Msa0523460:intron 25.0%
! TGTTGCCTTAAATTTAAGTA+AGG + chr3_4:76802856-76802875 Msa0523460:intron 25.0%
!!! TAACTAATTTTTGCTTTTGC+AGG + chr3_4:76803044-76803063 Msa0523460:intron 25.0%
!! AAAATCACAACATTTTGCAT+TGG + chr3_4:76803535-76803554 Msa0523460:intron 25.0%
!!! GACTTTCTGTTTTTTCTTTT+TGG + chr3_4:76803677-76803696 Msa0523460:intron 25.0%
! AAAACATAGGCAATATAGAA+AGG + chr3_4:76803972-76803991 Msa0523460:three_prime_UTR 25.0%
!!! CATTTTTTCCTTTAGAGAAT+TGG - chr3_4:76802679-76802698 None:intergenic 25.0%
! AAAAATGAACAATAGGTTCA+TGG + chr3_4:76802692-76802711 Msa0523460:intron 25.0%
! AAAATGAACAATAGGTTCAT+GGG + chr3_4:76802693-76802712 Msa0523460:intron 25.0%
! TGTTGCCTTAAATTTAAGTA+AGG + chr3_4:76802856-76802875 Msa0523460:intron 25.0%
!!! TAACTAATTTTTGCTTTTGC+AGG + chr3_4:76803044-76803063 Msa0523460:intron 25.0%
!! AAAATCACAACATTTTGCAT+TGG + chr3_4:76803535-76803554 Msa0523460:intron 25.0%
!!! GACTTTCTGTTTTTTCTTTT+TGG + chr3_4:76803677-76803696 Msa0523460:intron 25.0%
! AAAACATAGGCAATATAGAA+AGG + chr3_4:76803972-76803991 Msa0523460:three_prime_UTR 25.0%
TTTAGCTACCAATTCTCTAA+AGG + chr3_4:76802668-76802687 Msa0523460:intron 30.0%
! TAAATGAGTTGAAAGCAATC+TGG - chr3_4:76802764-76802783 None:intergenic 30.0%
TACTTGTCATTAGTACTTCT+TGG + chr3_4:76803084-76803103 Msa0523460:CDS 30.0%
!!! AGTTACTTTTCATCAACTAC+TGG + chr3_4:76803253-76803272 Msa0523460:intron 30.0%
!!! AGTTACTTTTCATCAACTAC+TGG + chr3_4:76803253-76803272 Msa0523460:intron 30.0%
CCTATGTATCCCTATAAATA+GGG - chr3_4:76803369-76803388 None:intergenic 30.0%
TCAGAAAAAGCTTCATTTCA+TGG + chr3_4:76803506-76803525 Msa0523460:intron 30.0%
TTTGTTAAAAACAGTCCGTT+TGG - chr3_4:76803584-76803603 None:intergenic 30.0%
TCAGTATTTGTACATCTTGA+AGG - chr3_4:76803850-76803869 None:intergenic 30.0%
TTTAGCTACCAATTCTCTAA+AGG + chr3_4:76802668-76802687 Msa0523460:intron 30.0%
! TAAATGAGTTGAAAGCAATC+TGG - chr3_4:76802764-76802783 None:intergenic 30.0%
TACTTGTCATTAGTACTTCT+TGG + chr3_4:76803084-76803103 Msa0523460:CDS 30.0%
!!! AGTTACTTTTCATCAACTAC+TGG + chr3_4:76803253-76803272 Msa0523460:intron 30.0%
!!! AGTTACTTTTCATCAACTAC+TGG + chr3_4:76803253-76803272 Msa0523460:intron 30.0%
CCTATGTATCCCTATAAATA+GGG - chr3_4:76803369-76803388 None:intergenic 30.0%
TCAGAAAAAGCTTCATTTCA+TGG + chr3_4:76803506-76803525 Msa0523460:intron 30.0%
TTTGTTAAAAACAGTCCGTT+TGG - chr3_4:76803584-76803603 None:intergenic 30.0%
TCAGTATTTGTACATCTTGA+AGG - chr3_4:76803850-76803869 None:intergenic 30.0%
ACATAGCTAAATCTTACTGC+AGG + chr3_4:76802479-76802498 Msa0523460:intron 35.0%
GAATAAAGATCAGCGTGTTA+AGG + chr3_4:76802512-76802531 Msa0523460:CDS 35.0%
GGGTATGAATGAACTTATGA+AGG + chr3_4:76802713-76802732 Msa0523460:intron 35.0%
TTCACTTTATGCTATTGCAG+TGG + chr3_4:76802897-76802916 Msa0523460:intron 35.0%
TGGTATCACACTAACAAAGT+TGG + chr3_4:76802917-76802936 Msa0523460:CDS 35.0%
! ATCACACTAACAAAGTTGGT+TGG + chr3_4:76802921-76802940 Msa0523460:CDS 35.0%
! CTCAAGAACAGAAGTTTTTG+TGG + chr3_4:76802962-76802981 Msa0523460:CDS 35.0%
!!! GTACTTCTTGGTTTTTTGCA+CGG + chr3_4:76803096-76803115 Msa0523460:CDS 35.0%
CCCTATTTATAGGGATACAT+AGG + chr3_4:76803366-76803385 Msa0523460:intron 35.0%
GCCTATGTATCCCTATAAAT+AGG - chr3_4:76803370-76803389 None:intergenic 35.0%
AAAATTCTATTGTCGGCCAA+TGG + chr3_4:76803601-76803620 Msa0523460:intron 35.0%
! TATGCTTTTCTTTTTGCTGC+AGG + chr3_4:76803801-76803820 Msa0523460:intron 35.0%
GTATTTGTACATCTTGAAGG+TGG - chr3_4:76803847-76803866 None:intergenic 35.0%
ATGTACAAATACTGACCAAG+AGG + chr3_4:76803855-76803874 Msa0523460:CDS 35.0%
GTAGCTATAAACCAAAGCAT+TGG + chr3_4:76803900-76803919 Msa0523460:exon 35.0%
!! TAAACCAAAGCATTGGATGA+TGG + chr3_4:76803907-76803926 Msa0523460:three_prime_UTR 35.0%
!! AAACCAAAGCATTGGATGAT+GGG + chr3_4:76803908-76803927 Msa0523460:three_prime_UTR 35.0%
! CAGATTTTGTGAACTACTTG+CGG - chr3_4:76803938-76803957 None:intergenic 35.0%
ACATAGCTAAATCTTACTGC+AGG + chr3_4:76802479-76802498 Msa0523460:intron 35.0%
GAATAAAGATCAGCGTGTTA+AGG + chr3_4:76802512-76802531 Msa0523460:CDS 35.0%
GGGTATGAATGAACTTATGA+AGG + chr3_4:76802713-76802732 Msa0523460:intron 35.0%
TTCACTTTATGCTATTGCAG+TGG + chr3_4:76802897-76802916 Msa0523460:intron 35.0%
TGGTATCACACTAACAAAGT+TGG + chr3_4:76802917-76802936 Msa0523460:CDS 35.0%
! ATCACACTAACAAAGTTGGT+TGG + chr3_4:76802921-76802940 Msa0523460:CDS 35.0%
! CTCAAGAACAGAAGTTTTTG+TGG + chr3_4:76802962-76802981 Msa0523460:CDS 35.0%
!!! GTACTTCTTGGTTTTTTGCA+CGG + chr3_4:76803096-76803115 Msa0523460:CDS 35.0%
CCCTATTTATAGGGATACAT+AGG + chr3_4:76803366-76803385 Msa0523460:intron 35.0%
GCCTATGTATCCCTATAAAT+AGG - chr3_4:76803370-76803389 None:intergenic 35.0%
AAAATTCTATTGTCGGCCAA+TGG + chr3_4:76803601-76803620 Msa0523460:intron 35.0%
! TATGCTTTTCTTTTTGCTGC+AGG + chr3_4:76803801-76803820 Msa0523460:intron 35.0%
GTATTTGTACATCTTGAAGG+TGG - chr3_4:76803847-76803866 None:intergenic 35.0%
ATGTACAAATACTGACCAAG+AGG + chr3_4:76803855-76803874 Msa0523460:CDS 35.0%
GTAGCTATAAACCAAAGCAT+TGG + chr3_4:76803900-76803919 Msa0523460:exon 35.0%
!! TAAACCAAAGCATTGGATGA+TGG + chr3_4:76803907-76803926 Msa0523460:three_prime_UTR 35.0%
!! AAACCAAAGCATTGGATGAT+GGG + chr3_4:76803908-76803927 Msa0523460:three_prime_UTR 35.0%
! CAGATTTTGTGAACTACTTG+CGG - chr3_4:76803938-76803957 None:intergenic 35.0%
TAAAGATCAGCGTGTTAAGG+AGG + chr3_4:76802515-76802534 Msa0523460:CDS 40.0%
ATGAACTTATGAAGGACCAC+AGG + chr3_4:76802721-76802740 Msa0523460:intron 40.0%
ATCTGGAGGGAATACTATCA+GGG - chr3_4:76802747-76802766 None:intergenic 40.0%
AATCTGGAGGGAATACTATC+AGG - chr3_4:76802748-76802767 None:intergenic 40.0%
! TGAGTTGAAAGCAATCTGGA+GGG - chr3_4:76802760-76802779 None:intergenic 40.0%
! ATGAGTTGAAAGCAATCTGG+AGG - chr3_4:76802761-76802780 None:intergenic 40.0%
!! TGAGTTCATCCTCTGCTTTT+TGG + chr3_4:76802990-76803009 Msa0523460:intron 40.0%
!!! TTCATCCTCTGCTTTTTGGT+CGG + chr3_4:76802994-76803013 Msa0523460:intron 40.0%
! TTTCATCAACTACTGGTCTC+AGG + chr3_4:76803260-76803279 Msa0523460:intron 40.0%
ATAACAGACGCAGAACCAAA+CGG + chr3_4:76803566-76803585 Msa0523460:intron 40.0%
ATCTGCCACAGATACACTTT+GGG + chr3_4:76803730-76803749 Msa0523460:intron 40.0%
! CCAAGTTCAAGTTTCAACGA+TGG - chr3_4:76803759-76803778 None:intergenic 40.0%
CCATCGTTGAAACTTGAACT+TGG + chr3_4:76803756-76803775 Msa0523460:intron 40.0%
CAGGTGGTATTAAGCATGTT+TGG + chr3_4:76803820-76803839 Msa0523460:intron 40.0%
TTGATGAACGATCTTCCTCT+TGG - chr3_4:76803873-76803892 None:intergenic 40.0%
TAAAGATCAGCGTGTTAAGG+AGG + chr3_4:76802515-76802534 Msa0523460:CDS 40.0%
ATGAACTTATGAAGGACCAC+AGG + chr3_4:76802721-76802740 Msa0523460:intron 40.0%
ATCTGGAGGGAATACTATCA+GGG - chr3_4:76802747-76802766 None:intergenic 40.0%
AATCTGGAGGGAATACTATC+AGG - chr3_4:76802748-76802767 None:intergenic 40.0%
! TGAGTTGAAAGCAATCTGGA+GGG - chr3_4:76802760-76802779 None:intergenic 40.0%
! ATGAGTTGAAAGCAATCTGG+AGG - chr3_4:76802761-76802780 None:intergenic 40.0%
!! TGAGTTCATCCTCTGCTTTT+TGG + chr3_4:76802990-76803009 Msa0523460:intron 40.0%
!!! TTCATCCTCTGCTTTTTGGT+CGG + chr3_4:76802994-76803013 Msa0523460:intron 40.0%
! TTTCATCAACTACTGGTCTC+AGG + chr3_4:76803260-76803279 Msa0523460:intron 40.0%
ATAACAGACGCAGAACCAAA+CGG + chr3_4:76803566-76803585 Msa0523460:intron 40.0%
ATCTGCCACAGATACACTTT+GGG + chr3_4:76803730-76803749 Msa0523460:intron 40.0%
! CCAAGTTCAAGTTTCAACGA+TGG - chr3_4:76803759-76803778 None:intergenic 40.0%
CCATCGTTGAAACTTGAACT+TGG + chr3_4:76803756-76803775 Msa0523460:intron 40.0%
CAGGTGGTATTAAGCATGTT+TGG + chr3_4:76803820-76803839 Msa0523460:intron 40.0%
TTGATGAACGATCTTCCTCT+TGG - chr3_4:76803873-76803892 None:intergenic 40.0%
ATCTTACTGCAGGTTGCAAG+TGG + chr3_4:76802489-76802508 Msa0523460:intron 45.0%
TCTTACTGCAGGTTGCAAGT+GGG + chr3_4:76802490-76802509 Msa0523460:intron 45.0%
!! TAAGGAGGCTCTAGGTACAA+TGG + chr3_4:76802530-76802549 Msa0523460:CDS 45.0%
!! AAGGAGGCTCTAGGTACAAT+GGG + chr3_4:76802531-76802550 Msa0523460:CDS 45.0%
ACGGTGTAACTCACTGTTAC+AGG + chr3_4:76803473-76803492 Msa0523460:intron 45.0%
GGGAAGCAAAGTAGAACCAT+TGG - chr3_4:76803620-76803639 None:intergenic 45.0%
CATCTGCCACAGATACACTT+TGG + chr3_4:76803729-76803748 Msa0523460:intron 45.0%
GGAAACCCAAAGTGTATCTG+TGG - chr3_4:76803738-76803757 None:intergenic 45.0%
! GCTTTTCTTTTTGCTGCAGG+TGG + chr3_4:76803804-76803823 Msa0523460:intron 45.0%
CAACCCATCATCCAATGCTT+TGG - chr3_4:76803914-76803933 None:intergenic 45.0%
ATCTTACTGCAGGTTGCAAG+TGG + chr3_4:76802489-76802508 Msa0523460:intron 45.0%
TCTTACTGCAGGTTGCAAGT+GGG + chr3_4:76802490-76802509 Msa0523460:intron 45.0%
!! TAAGGAGGCTCTAGGTACAA+TGG + chr3_4:76802530-76802549 Msa0523460:CDS 45.0%
!! AAGGAGGCTCTAGGTACAAT+GGG + chr3_4:76802531-76802550 Msa0523460:CDS 45.0%
ACGGTGTAACTCACTGTTAC+AGG + chr3_4:76803473-76803492 Msa0523460:intron 45.0%
GGGAAGCAAAGTAGAACCAT+TGG - chr3_4:76803620-76803639 None:intergenic 45.0%
CATCTGCCACAGATACACTT+TGG + chr3_4:76803729-76803748 Msa0523460:intron 45.0%
GGAAACCCAAAGTGTATCTG+TGG - chr3_4:76803738-76803757 None:intergenic 45.0%
! GCTTTTCTTTTTGCTGCAGG+TGG + chr3_4:76803804-76803823 Msa0523460:intron 45.0%
CAACCCATCATCCAATGCTT+TGG - chr3_4:76803914-76803933 None:intergenic 45.0%
!!! TAATTAATTATCTTTTTTTA+AGG + chr3_4:76804073-76804092 Msa0523460:three_prime_UTR 5.0%
!!! TAATTAATTATCTTTTTTTA+AGG + chr3_4:76804073-76804092 Msa0523460:three_prime_UTR 5.0%
!! AGGAGGCTCTAGGTACAATG+GGG + chr3_4:76802532-76802551 Msa0523460:CDS 50.0%
ACAGTCCGACCAAAAAGCAG+AGG - chr3_4:76803002-76803021 None:intergenic 50.0%
!!! TCTGCTTTTTGGTCGGACTG+TGG + chr3_4:76803001-76803020 Msa0523460:intron 50.0%
!! GCACGGACTTGTTTTCTTGC+CGG + chr3_4:76803113-76803132 Msa0523460:CDS 50.0%
GCAGTGAGCTACACTGTTAC+AGG + chr3_4:76803203-76803222 Msa0523460:intron 50.0%
!! AGGAGGCTCTAGGTACAATG+GGG + chr3_4:76802532-76802551 Msa0523460:CDS 50.0%
ACAGTCCGACCAAAAAGCAG+AGG - chr3_4:76803002-76803021 None:intergenic 50.0%
!!! TCTGCTTTTTGGTCGGACTG+TGG + chr3_4:76803001-76803020 Msa0523460:intron 50.0%
!! GCACGGACTTGTTTTCTTGC+CGG + chr3_4:76803113-76803132 Msa0523460:CDS 50.0%
GCAGTGAGCTACACTGTTAC+AGG + chr3_4:76803203-76803222 Msa0523460:intron 50.0%
CAGCGTGTTAAGGAGGCTCT+AGG + chr3_4:76802522-76802541 Msa0523460:CDS 55.0%
!! GGAGGCTCTAGGTACAATGG+GGG + chr3_4:76802533-76802552 Msa0523460:CDS 55.0%
CAATGGGGGCTTCAGTCTTC+AGG + chr3_4:76802547-76802566 Msa0523460:CDS 55.0%
GGGAATACTATCAGGGCCTG+TGG - chr3_4:76802740-76802759 None:intergenic 55.0%
CAGCGTGTTAAGGAGGCTCT+AGG + chr3_4:76802522-76802541 Msa0523460:CDS 55.0%
!! GGAGGCTCTAGGTACAATGG+GGG + chr3_4:76802533-76802552 Msa0523460:CDS 55.0%
CAATGGGGGCTTCAGTCTTC+AGG + chr3_4:76802547-76802566 Msa0523460:CDS 55.0%
GGGAATACTATCAGGGCCTG+TGG - chr3_4:76802740-76802759 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 76802347 76804115 76802347 ID=Msa0523460;Name=Msa0523460
chr3_4 mRNA 76802347 76804115 76802347 ID=Msa0523460-mRNA-1;Parent=Msa0523460;Name=Msa0523460-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0.75|0.6|1|0.75|0.8|5|212|101
chr3_4 exon 76802347 76802367 76802347 ID=Msa0523460-mRNA-1:exon:22407;Parent=Msa0523460-mRNA-1
chr3_4 exon 76802501 76802568 76802501 ID=Msa0523460-mRNA-1:exon:22408;Parent=Msa0523460-mRNA-1
chr3_4 exon 76802917 76802983 76802917 ID=Msa0523460-mRNA-1:exon:22409;Parent=Msa0523460-mRNA-1
chr3_4 exon 76803066 76803134 76803066 ID=Msa0523460-mRNA-1:exon:22410;Parent=Msa0523460-mRNA-1
chr3_4 exon 76803823 76804115 76803823 ID=Msa0523460-mRNA-1:exon:22411;Parent=Msa0523460-mRNA-1
chr3_4 CDS 76802347 76802367 76802347 ID=Msa0523460-mRNA-1:cds;Parent=Msa0523460-mRNA-1
chr3_4 CDS 76802501 76802568 76802501 ID=Msa0523460-mRNA-1:cds;Parent=Msa0523460-mRNA-1
chr3_4 CDS 76802917 76802983 76802917 ID=Msa0523460-mRNA-1:cds;Parent=Msa0523460-mRNA-1
chr3_4 CDS 76803066 76803134 76803066 ID=Msa0523460-mRNA-1:cds;Parent=Msa0523460-mRNA-1
chr3_4 CDS 76803823 76803903 76803823 ID=Msa0523460-mRNA-1:cds;Parent=Msa0523460-mRNA-1
chr3_4 three_prime_UTR 76803904 76804115 76803904 ID=Msa0523460-mRNA-1:three_prime_utr;Parent=Msa0523460-mRNA-1
Gene Sequence

>Msa0523460

ATGCTTAAAAGGACTACTAATGTTGCAAGTGGGAATAAAGATCAGCGTGTTAAGGAGGCTCTAGGTACAATGGGGGCTTCAGTCTTCAGTGGTATCACACTAACAAAGTTGGTTGGAGTCATCGTTCTTTGCTTCTCAAGAACAGAAGTTTTTGTGGTTTATTACTTTCAAATGTACTTGTCATTAGTACTTCTTGGTTTTTTGCACGGACTTGTTTTCTTGCCGGTGGTATTAAGCATGTTTGGTCCACCTTCAAGATGTACAAATACTGACCAAGAGGAAGATCGTTCATCAACTTCTTCGTAG

Protein sequence

>Msa0523460

MLKRTTNVASGNKDQRVKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLSLVLLGFLHGLVFLPVVLSMFGPPSRCTNTDQEEDRSSTSS*