AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1275360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1275360 MtrunA17_Chr1g0212511 96.335 191 7 0 1 191 74 264 5.38e-139 388
Msa1275360 MtrunA17_Chr7g0222981 69.159 107 26 2 10 116 66 165 4.04e-43 142
Msa1275360 MtrunA17_Chr3g0144021 68.687 99 30 1 2 99 72 170 1.01e-42 142
Msa1275360 MtrunA17_Chr4g0043891 44.706 85 38 1 12 96 8 83 8.85e-18 78.6
Msa1275360 MtrunA17_Chr2g0283141 44.615 65 36 0 10 74 53 117 4.51e-16 75.5
Msa1275360 MtrunA17_Chr7g0223471 46.774 62 33 0 10 71 45 106 8.38e-15 71.6
Msa1275360 MtrunA17_Chr8g0392991 39.506 81 48 1 12 92 96 175 9.88e-14 68.6
Msa1275360 MtrunA17_Chr7g0238431 46.774 62 33 0 12 73 8 69 1.56e-13 66.2
Msa1275360 MtrunA17_Chr4g0031341 46.667 60 32 0 12 71 25 84 1.41e-12 64.3
Msa1275360 MtrunA17_Chr5g0436661 43.333 60 34 0 12 71 33 92 2.82e-12 62.4
Msa1275360 MtrunA17_Chr5g0405351 43.750 64 35 1 9 71 27 90 3.79e-11 60.8
Msa1275360 MtrunA17_Chr1g0153171 43.333 60 34 0 12 71 90 149 9.81e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1275360 AT4G35550.1 46.667 210 62 5 2 191 89 268 2.32e-51 166
Msa1275360 AT1G20700.2 56.383 94 40 1 2 95 23 115 1.32e-34 120
Msa1275360 AT1G20700.3 56.383 94 40 1 2 95 85 177 1.89e-34 121
Msa1275360 AT1G20700.1 56.383 94 40 1 2 95 85 177 1.93e-34 121
Msa1275360 AT1G20710.1 62.687 67 24 1 19 85 86 151 1.10e-20 85.5
Msa1275360 AT5G45980.1 45.312 64 35 0 10 73 53 116 1.01e-15 74.3
Msa1275360 AT2G33880.2 45.312 64 35 0 10 73 53 116 1.03e-15 74.7
Msa1275360 AT2G33880.1 45.312 64 35 0 10 73 53 116 1.07e-15 74.3
Msa1275360 AT3G18010.1 46.667 60 32 0 12 71 76 135 6.82e-14 69.3
Msa1275360 AT3G11260.1 48.333 60 31 0 12 71 24 83 2.49e-13 65.5
Msa1275360 AT5G05770.1 37.662 77 48 0 12 88 29 105 3.08e-13 63.9
Msa1275360 AT2G28610.1 43.548 62 35 0 12 73 8 69 1.03e-12 65.1
Msa1275360 AT2G01500.1 45.455 55 30 0 12 66 61 115 1.61e-11 62.0
Msa1275360 AT5G59340.1 40.625 64 38 0 8 71 10 73 3.94e-11 60.8

Find 53 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACATTCGTTTCAGAAATT+TGG 0.112745 8_3:-9303876 None:intergenic
TCGATCTAGCACGCCTATTT+TGG 0.121950 8_3:-9303909 None:intergenic
TTTATAATTGGTTCCAAAAT+AGG 0.153266 8_3:+9303896 Msa1275360:CDS
AATTTGGCAGGTTGATATTT+TGG 0.169604 8_3:+9304800 Msa1275360:exon
CTGAAACGAATGTTTATAAT+TGG 0.212926 8_3:+9303884 Msa1275360:CDS
TTTCCAGTAACTATCTTAAA+AGG 0.243645 8_3:-9304930 None:intergenic
AATGTTATTACATCATATTT+TGG 0.286215 8_3:+9304975 Msa1275360:three_prime_UTR
CGAATATACGCTCAAGAATC+TGG 0.304326 8_3:-9303786 None:intergenic
CTGGAAATATTTCCAGTGAT+TGG 0.320216 8_3:+9304946 Msa1275360:three_prime_UTR
AATTGTAGTCCTCTGCTTGC+TGG 0.362368 8_3:-9304781 None:intergenic
TTACATAATTCCTTCTGAAC+TGG 0.378684 8_3:-9305084 None:intergenic
CTTCTTAAAAGTTAACCATT+TGG 0.380757 8_3:-9305159 None:intergenic
CGTATATTCGATCAGGGAAA+TGG 0.392284 8_3:+9303799 Msa1275360:CDS
GCAAGCAGAGGACTACAATT+TGG 0.393799 8_3:+9304784 Msa1275360:CDS
TCTTGAGCGTATATTCGATC+AGG 0.413169 8_3:+9303792 Msa1275360:CDS
TCAAGAATCTGGAGCTGAAC+CGG 0.421307 8_3:-9303775 None:intergenic
TGTAGGAGTCCACCTCTGTC+TGG 0.437314 8_3:-9303752 None:intergenic
AGACATGCCACTCAAATTGC+TGG 0.442604 8_3:-9304166 None:intergenic
TTTCAGAAATTTGGCCATGC+TGG 0.447497 8_3:-9303867 None:intergenic
ATAACTTTGAGTGTGTTGCC+TGG 0.462919 8_3:+9304854 Msa1275360:three_prime_UTR
TCTCAACAAAATGCTGCTCT+AGG 0.464326 8_3:+9304030 Msa1275360:CDS
AACATTTATATGCCAATCAC+TGG 0.465123 8_3:-9304958 None:intergenic
GTTGTCATCTTATAACCAAA+TGG 0.469475 8_3:+9305144 Msa1275360:three_prime_UTR
TGTTGAGAATGAAATTCCTC+TGG 0.474708 8_3:-9304015 None:intergenic
TCAGGGAATGACTATCTAGC+TGG 0.485659 8_3:+9304725 Msa1275360:intron
ACAGAGGTGGACTCCTACAC+CGG 0.495315 8_3:+9303756 Msa1275360:CDS
AACTGGAAGTAAAATATTCG+TGG 0.496148 8_3:-9305067 None:intergenic
CTCAACAAAATGCTGCTCTA+GGG 0.501777 8_3:+9304031 Msa1275360:CDS
TAACTTTGAGTGTGTTGCCT+GGG 0.506964 8_3:+9304855 Msa1275360:three_prime_UTR
GCAGAGGACTACAATTTGGC+AGG 0.523975 8_3:+9304788 Msa1275360:CDS
TGCGACTCATTGATGACAGC+TGG 0.529717 8_3:+9303715 Msa1275360:exon
TCCGGCAAGAAAATATATTG+AGG 0.537944 8_3:+9305034 Msa1275360:three_prime_UTR
AACATATTCCGTGTTTCCAT+CGG 0.539020 8_3:+9304125 Msa1275360:CDS
ACCGCCATCCGATGGAAACA+CGG 0.553887 8_3:-9304133 None:intergenic
AGAGACTGAGGTTGATTCCA+AGG 0.556104 8_3:+9303978 Msa1275360:CDS
GATCTTATACCGCCATCCGA+TGG 0.574800 8_3:-9304141 None:intergenic
CTTGAGCGTATATTCGATCA+GGG 0.579984 8_3:+9303793 Msa1275360:CDS
ATCTGGAGCTGAACCGGTGT+AGG 0.590506 8_3:-9303769 None:intergenic
TCCGTGTTTCCATCGGATGG+CGG 0.595864 8_3:+9304132 Msa1275360:CDS
TATTCCGTGTTTCCATCGGA+TGG 0.597599 8_3:+9304129 Msa1275360:CDS
GCTACTGAACTCAGCCAGCA+TGG 0.597739 8_3:+9303853 Msa1275360:CDS
TCAACAAAATGCTGCTCTAG+GGG 0.599937 8_3:+9304032 Msa1275360:CDS
AACTAGTAACACTGAATCAG+AGG 0.600354 8_3:+9303954 Msa1275360:CDS
CCAGTAACTATCTTAAAAGG+TGG 0.602093 8_3:-9304927 None:intergenic
CATGCCACTCAAATTGCTGG+TGG 0.604897 8_3:-9304163 None:intergenic
ACTGGAAGTAAAATATTCGT+GGG 0.611912 8_3:-9305066 None:intergenic
TTTCACACGAACATAAGCCC+AGG 0.644552 8_3:-9304872 None:intergenic
AAATCACATCCAGACAGAGG+TGG 0.644627 8_3:+9303743 Msa1275360:CDS
AGATCCACCAGCAATTTGAG+TGG 0.671305 8_3:+9304159 Msa1275360:CDS
TGAATCAGAGGTAGAGACTG+AGG 0.683491 8_3:+9303966 Msa1275360:CDS
GGATAAGAAGACAAAACCAG+AGG 0.688078 8_3:+9303999 Msa1275360:CDS
CAATATATACCAGCAAGCAG+AGG 0.697674 8_3:+9304772 Msa1275360:CDS
ACAAAATCACATCCAGACAG+AGG 0.711170 8_3:+9303740 Msa1275360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGTTATTACATCATATTT+TGG + chr8_3:9304975-9304994 Msa1275360:three_prime_UTR 15.0%
!!! ATATTTTTACTATTTTCTTC+CGG + chr8_3:9305016-9305035 Msa1275360:three_prime_UTR 15.0%
!!! AATGTTATTACATCATATTT+TGG + chr8_3:9304975-9304994 Msa1275360:three_prime_UTR 15.0%
!!! ATATTTTTACTATTTTCTTC+CGG + chr8_3:9305016-9305035 Msa1275360:three_prime_UTR 15.0%
!!! TTTATAATTGGTTCCAAAAT+AGG + chr8_3:9303896-9303915 Msa1275360:CDS 20.0%
!! TAAGATCATACGAAAAATAT+AGG - chr8_3:9304265-9304284 None:intergenic 20.0%
!! TCTTGATATTATATGACAAA+TGG + chr8_3:9304388-9304407 Msa1275360:intron 20.0%
!! ACTAATTTGAAGATTTGATT+AGG + chr8_3:9304427-9304446 Msa1275360:intron 20.0%
!!! TGTGTTTAACATTTTAGTAA+AGG + chr8_3:9304562-9304581 Msa1275360:intron 20.0%
!!! ATGCTAGTAAAACATTTTTT+TGG - chr8_3:9304617-9304636 None:intergenic 20.0%
!! AAAATATCAGGAAAAGAATA+TGG - chr8_3:9304705-9304724 None:intergenic 20.0%
!!! TTTATAATTGGTTCCAAAAT+AGG + chr8_3:9303896-9303915 Msa1275360:CDS 20.0%
!! TAAGATCATACGAAAAATAT+AGG - chr8_3:9304265-9304284 None:intergenic 20.0%
!! TCTTGATATTATATGACAAA+TGG + chr8_3:9304388-9304407 Msa1275360:intron 20.0%
!! ACTAATTTGAAGATTTGATT+AGG + chr8_3:9304427-9304446 Msa1275360:intron 20.0%
!!! TGTGTTTAACATTTTAGTAA+AGG + chr8_3:9304562-9304581 Msa1275360:intron 20.0%
!!! ATGCTAGTAAAACATTTTTT+TGG - chr8_3:9304617-9304636 None:intergenic 20.0%
!! AAAATATCAGGAAAAGAATA+TGG - chr8_3:9304705-9304724 None:intergenic 20.0%
! AAACATTCGTTTCAGAAATT+TGG - chr8_3:9303879-9303898 None:intergenic 25.0%
! CTGAAACGAATGTTTATAAT+TGG + chr8_3:9303884-9303903 Msa1275360:CDS 25.0%
! TCGAAAAGAAAAATGCAAAA+TGG + chr8_3:9303928-9303947 Msa1275360:CDS 25.0%
! CGAAAAGAAAAATGCAAAAT+GGG + chr8_3:9303929-9303948 Msa1275360:CDS 25.0%
! GAAAAGAAAAATGCAAAATG+GGG + chr8_3:9303930-9303949 Msa1275360:CDS 25.0%
! AAAAGAAAAATGCAAAATGG+GGG + chr8_3:9303931-9303950 Msa1275360:CDS 25.0%
! TTTCAACTAGATTCTTTCTA+AGG - chr8_3:9304305-9304324 None:intergenic 25.0%
! GAAAGAATCTAGTTGAAATT+CGG + chr8_3:9304307-9304326 Msa1275360:intron 25.0%
!! ACAAATTTAGGGGTTTATTT+TGG + chr8_3:9304362-9304381 Msa1275360:intron 25.0%
! ATCTTCAAATTAGTATTCCA+AGG - chr8_3:9304421-9304440 None:intergenic 25.0%
!! TTCTTTTCCTGATATTTTTC+AGG + chr8_3:9304707-9304726 Msa1275360:intron 25.0%
!! TCTTTTCCTGATATTTTTCA+GGG + chr8_3:9304708-9304727 Msa1275360:intron 25.0%
! TTTCCAGTAACTATCTTAAA+AGG - chr8_3:9304933-9304952 None:intergenic 25.0%
!! AACCAAATGGTTAACTTTTA+AGG + chr8_3:9305157-9305176 Msa1275360:three_prime_UTR 25.0%
!! ACCAAATGGTTAACTTTTAA+GGG + chr8_3:9305158-9305177 Msa1275360:three_prime_UTR 25.0%
! AAACATTCGTTTCAGAAATT+TGG - chr8_3:9303879-9303898 None:intergenic 25.0%
! CTGAAACGAATGTTTATAAT+TGG + chr8_3:9303884-9303903 Msa1275360:CDS 25.0%
! TCGAAAAGAAAAATGCAAAA+TGG + chr8_3:9303928-9303947 Msa1275360:CDS 25.0%
! CGAAAAGAAAAATGCAAAAT+GGG + chr8_3:9303929-9303948 Msa1275360:CDS 25.0%
! GAAAAGAAAAATGCAAAATG+GGG + chr8_3:9303930-9303949 Msa1275360:CDS 25.0%
! AAAAGAAAAATGCAAAATGG+GGG + chr8_3:9303931-9303950 Msa1275360:CDS 25.0%
! TTTCAACTAGATTCTTTCTA+AGG - chr8_3:9304305-9304324 None:intergenic 25.0%
! GAAAGAATCTAGTTGAAATT+CGG + chr8_3:9304307-9304326 Msa1275360:intron 25.0%
!! ACAAATTTAGGGGTTTATTT+TGG + chr8_3:9304362-9304381 Msa1275360:intron 25.0%
! ATCTTCAAATTAGTATTCCA+AGG - chr8_3:9304421-9304440 None:intergenic 25.0%
!! TTCTTTTCCTGATATTTTTC+AGG + chr8_3:9304707-9304726 Msa1275360:intron 25.0%
!! TCTTTTCCTGATATTTTTCA+GGG + chr8_3:9304708-9304727 Msa1275360:intron 25.0%
! TTTCCAGTAACTATCTTAAA+AGG - chr8_3:9304933-9304952 None:intergenic 25.0%
TCCAAGCAAAGAAAAAATCA+AGG + chr8_3:9303825-9303844 Msa1275360:CDS 30.0%
!!! TCCTTGATTTTTTCTTTGCT+TGG - chr8_3:9303829-9303848 None:intergenic 30.0%
! ACCAAGAAGTGTACAAATTT+AGG + chr8_3:9304350-9304369 Msa1275360:intron 30.0%
! CCAAGAAGTGTACAAATTTA+GGG + chr8_3:9304351-9304370 Msa1275360:intron 30.0%
! CAAGAAGTGTACAAATTTAG+GGG + chr8_3:9304352-9304371 Msa1275360:intron 30.0%
!!! AATTTGGCAGGTTGATATTT+TGG + chr8_3:9304800-9304819 Msa1275360:exon 30.0%
AACATTTATATGCCAATCAC+TGG - chr8_3:9304961-9304980 None:intergenic 30.0%
!!! ATATTTTGGAGCTTGTTTCT+TGG + chr8_3:9304989-9305008 Msa1275360:three_prime_UTR 30.0%
! TCCTCAATATATTTTCTTGC+CGG - chr8_3:9305038-9305057 None:intergenic 30.0%
ACTGGAAGTAAAATATTCGT+GGG - chr8_3:9305069-9305088 None:intergenic 30.0%
AACTGGAAGTAAAATATTCG+TGG - chr8_3:9305070-9305089 None:intergenic 30.0%
! TATTTTACTTCCAGTTCAGA+AGG + chr8_3:9305074-9305093 Msa1275360:three_prime_UTR 30.0%
TTACATAATTCCTTCTGAAC+TGG - chr8_3:9305087-9305106 None:intergenic 30.0%
GTTGTCATCTTATAACCAAA+TGG + chr8_3:9305144-9305163 Msa1275360:three_prime_UTR 30.0%
TCCAAGCAAAGAAAAAATCA+AGG + chr8_3:9303825-9303844 Msa1275360:CDS 30.0%
!!! TCCTTGATTTTTTCTTTGCT+TGG - chr8_3:9303829-9303848 None:intergenic 30.0%
! ACCAAGAAGTGTACAAATTT+AGG + chr8_3:9304350-9304369 Msa1275360:intron 30.0%
! CCAAGAAGTGTACAAATTTA+GGG + chr8_3:9304351-9304370 Msa1275360:intron 30.0%
! CAAGAAGTGTACAAATTTAG+GGG + chr8_3:9304352-9304371 Msa1275360:intron 30.0%
!!! AATTTGGCAGGTTGATATTT+TGG + chr8_3:9304800-9304819 Msa1275360:exon 30.0%
AACATTTATATGCCAATCAC+TGG - chr8_3:9304961-9304980 None:intergenic 30.0%
!!! ATATTTTGGAGCTTGTTTCT+TGG + chr8_3:9304989-9305008 Msa1275360:three_prime_UTR 30.0%
! TCCTCAATATATTTTCTTGC+CGG - chr8_3:9305038-9305057 None:intergenic 30.0%
ACTGGAAGTAAAATATTCGT+GGG - chr8_3:9305069-9305088 None:intergenic 30.0%
AACTGGAAGTAAAATATTCG+TGG - chr8_3:9305070-9305089 None:intergenic 30.0%
! TATTTTACTTCCAGTTCAGA+AGG + chr8_3:9305074-9305093 Msa1275360:three_prime_UTR 30.0%
TTACATAATTCCTTCTGAAC+TGG - chr8_3:9305087-9305106 None:intergenic 30.0%
GTTGTCATCTTATAACCAAA+TGG + chr8_3:9305144-9305163 Msa1275360:three_prime_UTR 30.0%
AACTAGTAACACTGAATCAG+AGG + chr8_3:9303954-9303973 Msa1275360:CDS 35.0%
!!! TGGTTTTGTCTTCTTATCCT+TGG - chr8_3:9303998-9304017 None:intergenic 35.0%
TGTTGAGAATGAAATTCCTC+TGG - chr8_3:9304018-9304037 None:intergenic 35.0%
!! GCAATTCAGAGCATTTTTCT+TGG - chr8_3:9304080-9304099 None:intergenic 35.0%
AACATATTCCGTGTTTCCAT+CGG + chr8_3:9304125-9304144 Msa1275360:CDS 35.0%
CCCTAAATTTGTACACTTCT+TGG - chr8_3:9304354-9304373 None:intergenic 35.0%
TGACAAATGGACATTAACCT+TGG + chr8_3:9304401-9304420 Msa1275360:intron 35.0%
GTCATTCCCTGAAAAATATC+AGG - chr8_3:9304717-9304736 None:intergenic 35.0%
TGACTATCTAGCTGGAAAAA+TGG + chr8_3:9304733-9304752 Msa1275360:CDS 35.0%
!! CTGGAAAAATGGAAGTATCT+GGG + chr8_3:9304744-9304763 Msa1275360:CDS 35.0%
CCAGTAACTATCTTAAAAGG+TGG - chr8_3:9304930-9304949 None:intergenic 35.0%
!!! CCACCTTTTAAGATAGTTAC+TGG + chr8_3:9304927-9304946 Msa1275360:three_prime_UTR 35.0%
CTGGAAATATTTCCAGTGAT+TGG + chr8_3:9304946-9304965 Msa1275360:three_prime_UTR 35.0%
TCCGGCAAGAAAATATATTG+AGG + chr8_3:9305034-9305053 Msa1275360:three_prime_UTR 35.0%
AACTAGTAACACTGAATCAG+AGG + chr8_3:9303954-9303973 Msa1275360:CDS 35.0%
!!! TGGTTTTGTCTTCTTATCCT+TGG - chr8_3:9303998-9304017 None:intergenic 35.0%
TGTTGAGAATGAAATTCCTC+TGG - chr8_3:9304018-9304037 None:intergenic 35.0%
!! GCAATTCAGAGCATTTTTCT+TGG - chr8_3:9304080-9304099 None:intergenic 35.0%
AACATATTCCGTGTTTCCAT+CGG + chr8_3:9304125-9304144 Msa1275360:CDS 35.0%
CCCTAAATTTGTACACTTCT+TGG - chr8_3:9304354-9304373 None:intergenic 35.0%
TGACAAATGGACATTAACCT+TGG + chr8_3:9304401-9304420 Msa1275360:intron 35.0%
GTCATTCCCTGAAAAATATC+AGG - chr8_3:9304717-9304736 None:intergenic 35.0%
TGACTATCTAGCTGGAAAAA+TGG + chr8_3:9304733-9304752 Msa1275360:CDS 35.0%
!! CTGGAAAAATGGAAGTATCT+GGG + chr8_3:9304744-9304763 Msa1275360:CDS 35.0%
CCAGTAACTATCTTAAAAGG+TGG - chr8_3:9304930-9304949 None:intergenic 35.0%
!!! CCACCTTTTAAGATAGTTAC+TGG + chr8_3:9304927-9304946 Msa1275360:three_prime_UTR 35.0%
CTGGAAATATTTCCAGTGAT+TGG + chr8_3:9304946-9304965 Msa1275360:three_prime_UTR 35.0%
TCCGGCAAGAAAATATATTG+AGG + chr8_3:9305034-9305053 Msa1275360:three_prime_UTR 35.0%
ACAAAATCACATCCAGACAG+AGG + chr8_3:9303740-9303759 Msa1275360:CDS 40.0%
CGAATATACGCTCAAGAATC+TGG - chr8_3:9303789-9303808 None:intergenic 40.0%
TCTTGAGCGTATATTCGATC+AGG + chr8_3:9303792-9303811 Msa1275360:CDS 40.0%
CTTGAGCGTATATTCGATCA+GGG + chr8_3:9303793-9303812 Msa1275360:CDS 40.0%
CGTATATTCGATCAGGGAAA+TGG + chr8_3:9303799-9303818 Msa1275360:CDS 40.0%
TTTCAGAAATTTGGCCATGC+TGG - chr8_3:9303870-9303889 None:intergenic 40.0%
GGATAAGAAGACAAAACCAG+AGG + chr8_3:9303999-9304018 Msa1275360:CDS 40.0%
TCTCAACAAAATGCTGCTCT+AGG + chr8_3:9304030-9304049 Msa1275360:CDS 40.0%
CTCAACAAAATGCTGCTCTA+GGG + chr8_3:9304031-9304050 Msa1275360:CDS 40.0%
TCAACAAAATGCTGCTCTAG+GGG + chr8_3:9304032-9304051 Msa1275360:CDS 40.0%
!! CAGAGCATTTTTCTTGGTTC+TGG - chr8_3:9304074-9304093 None:intergenic 40.0%
! CTCTCACCATTGTAGCTTTT+GGG + chr8_3:9304657-9304676 Msa1275360:intron 40.0%
!! GCTGGAAAAATGGAAGTATC+TGG + chr8_3:9304743-9304762 Msa1275360:CDS 40.0%
CAATATATACCAGCAAGCAG+AGG + chr8_3:9304772-9304791 Msa1275360:CDS 40.0%
ATAACTTTGAGTGTGTTGCC+TGG + chr8_3:9304854-9304873 Msa1275360:three_prime_UTR 40.0%
TAACTTTGAGTGTGTTGCCT+GGG + chr8_3:9304855-9304874 Msa1275360:three_prime_UTR 40.0%
ACAAAATCACATCCAGACAG+AGG + chr8_3:9303740-9303759 Msa1275360:CDS 40.0%
CGAATATACGCTCAAGAATC+TGG - chr8_3:9303789-9303808 None:intergenic 40.0%
TCTTGAGCGTATATTCGATC+AGG + chr8_3:9303792-9303811 Msa1275360:CDS 40.0%
CTTGAGCGTATATTCGATCA+GGG + chr8_3:9303793-9303812 Msa1275360:CDS 40.0%
CGTATATTCGATCAGGGAAA+TGG + chr8_3:9303799-9303818 Msa1275360:CDS 40.0%
TTTCAGAAATTTGGCCATGC+TGG - chr8_3:9303870-9303889 None:intergenic 40.0%
GGATAAGAAGACAAAACCAG+AGG + chr8_3:9303999-9304018 Msa1275360:CDS 40.0%
TCTCAACAAAATGCTGCTCT+AGG + chr8_3:9304030-9304049 Msa1275360:CDS 40.0%
CTCAACAAAATGCTGCTCTA+GGG + chr8_3:9304031-9304050 Msa1275360:CDS 40.0%
TCAACAAAATGCTGCTCTAG+GGG + chr8_3:9304032-9304051 Msa1275360:CDS 40.0%
!! CAGAGCATTTTTCTTGGTTC+TGG - chr8_3:9304074-9304093 None:intergenic 40.0%
! CTCTCACCATTGTAGCTTTT+GGG + chr8_3:9304657-9304676 Msa1275360:intron 40.0%
!! GCTGGAAAAATGGAAGTATC+TGG + chr8_3:9304743-9304762 Msa1275360:CDS 40.0%
CAATATATACCAGCAAGCAG+AGG + chr8_3:9304772-9304791 Msa1275360:CDS 40.0%
ATAACTTTGAGTGTGTTGCC+TGG + chr8_3:9304854-9304873 Msa1275360:three_prime_UTR 40.0%
TAACTTTGAGTGTGTTGCCT+GGG + chr8_3:9304855-9304874 Msa1275360:three_prime_UTR 40.0%
AAATCACATCCAGACAGAGG+TGG + chr8_3:9303743-9303762 Msa1275360:CDS 45.0%
! TCAAGAATCTGGAGCTGAAC+CGG - chr8_3:9303778-9303797 None:intergenic 45.0%
! TCGATCTAGCACGCCTATTT+TGG - chr8_3:9303912-9303931 None:intergenic 45.0%
TGAATCAGAGGTAGAGACTG+AGG + chr8_3:9303966-9303985 Msa1275360:CDS 45.0%
! AGAGACTGAGGTTGATTCCA+AGG + chr8_3:9303978-9303997 Msa1275360:CDS 45.0%
TATTCCGTGTTTCCATCGGA+TGG + chr8_3:9304129-9304148 Msa1275360:CDS 45.0%
AGATCCACCAGCAATTTGAG+TGG + chr8_3:9304159-9304178 Msa1275360:CDS 45.0%
AGACATGCCACTCAAATTGC+TGG - chr8_3:9304169-9304188 None:intergenic 45.0%
CCAAAAGCTACAATGGTGAG+AGG - chr8_3:9304659-9304678 None:intergenic 45.0%
! CCTCTCACCATTGTAGCTTT+TGG + chr8_3:9304656-9304675 Msa1275360:intron 45.0%
TGTCAGCCCAAAAGCTACAA+TGG - chr8_3:9304666-9304685 None:intergenic 45.0%
TTTGGGCTGACAATCAAGAC+TGG + chr8_3:9304674-9304693 Msa1275360:intron 45.0%
TCAGGGAATGACTATCTAGC+TGG + chr8_3:9304725-9304744 Msa1275360:intron 45.0%
AATTGTAGTCCTCTGCTTGC+TGG - chr8_3:9304784-9304803 None:intergenic 45.0%
GCAAGCAGAGGACTACAATT+TGG + chr8_3:9304784-9304803 Msa1275360:CDS 45.0%
TTTCACACGAACATAAGCCC+AGG - chr8_3:9304875-9304894 None:intergenic 45.0%
AAATCACATCCAGACAGAGG+TGG + chr8_3:9303743-9303762 Msa1275360:CDS 45.0%
! TCAAGAATCTGGAGCTGAAC+CGG - chr8_3:9303778-9303797 None:intergenic 45.0%
! TCGATCTAGCACGCCTATTT+TGG - chr8_3:9303912-9303931 None:intergenic 45.0%
TGAATCAGAGGTAGAGACTG+AGG + chr8_3:9303966-9303985 Msa1275360:CDS 45.0%
! AGAGACTGAGGTTGATTCCA+AGG + chr8_3:9303978-9303997 Msa1275360:CDS 45.0%
TATTCCGTGTTTCCATCGGA+TGG + chr8_3:9304129-9304148 Msa1275360:CDS 45.0%
AGATCCACCAGCAATTTGAG+TGG + chr8_3:9304159-9304178 Msa1275360:CDS 45.0%
AGACATGCCACTCAAATTGC+TGG - chr8_3:9304169-9304188 None:intergenic 45.0%
CCAAAAGCTACAATGGTGAG+AGG - chr8_3:9304659-9304678 None:intergenic 45.0%
! CCTCTCACCATTGTAGCTTT+TGG + chr8_3:9304656-9304675 Msa1275360:intron 45.0%
TGTCAGCCCAAAAGCTACAA+TGG - chr8_3:9304666-9304685 None:intergenic 45.0%
TTTGGGCTGACAATCAAGAC+TGG + chr8_3:9304674-9304693 Msa1275360:intron 45.0%
TCAGGGAATGACTATCTAGC+TGG + chr8_3:9304725-9304744 Msa1275360:intron 45.0%
AATTGTAGTCCTCTGCTTGC+TGG - chr8_3:9304784-9304803 None:intergenic 45.0%
GCAAGCAGAGGACTACAATT+TGG + chr8_3:9304784-9304803 Msa1275360:CDS 45.0%
TTTCACACGAACATAAGCCC+AGG - chr8_3:9304875-9304894 None:intergenic 45.0%
! TGCGACTCATTGATGACAGC+TGG + chr8_3:9303715-9303734 Msa1275360:exon 50.0%
GATCTTATACCGCCATCCGA+TGG - chr8_3:9304144-9304163 None:intergenic 50.0%
CATGCCACTCAAATTGCTGG+TGG - chr8_3:9304166-9304185 None:intergenic 50.0%
GCAGAGGACTACAATTTGGC+AGG + chr8_3:9304788-9304807 Msa1275360:CDS 50.0%
! TGCGACTCATTGATGACAGC+TGG + chr8_3:9303715-9303734 Msa1275360:exon 50.0%
GATCTTATACCGCCATCCGA+TGG - chr8_3:9304144-9304163 None:intergenic 50.0%
CATGCCACTCAAATTGCTGG+TGG - chr8_3:9304166-9304185 None:intergenic 50.0%
GCAGAGGACTACAATTTGGC+AGG + chr8_3:9304788-9304807 Msa1275360:CDS 50.0%
TGTAGGAGTCCACCTCTGTC+TGG - chr8_3:9303755-9303774 None:intergenic 55.0%
! ACAGAGGTGGACTCCTACAC+CGG + chr8_3:9303756-9303775 Msa1275360:CDS 55.0%
! ATCTGGAGCTGAACCGGTGT+AGG - chr8_3:9303772-9303791 None:intergenic 55.0%
GCTACTGAACTCAGCCAGCA+TGG + chr8_3:9303853-9303872 Msa1275360:CDS 55.0%
TCCGTGTTTCCATCGGATGG+CGG + chr8_3:9304132-9304151 Msa1275360:CDS 55.0%
ACCGCCATCCGATGGAAACA+CGG - chr8_3:9304136-9304155 None:intergenic 55.0%
TGTAGGAGTCCACCTCTGTC+TGG - chr8_3:9303755-9303774 None:intergenic 55.0%
! ACAGAGGTGGACTCCTACAC+CGG + chr8_3:9303756-9303775 Msa1275360:CDS 55.0%
! ATCTGGAGCTGAACCGGTGT+AGG - chr8_3:9303772-9303791 None:intergenic 55.0%
GCTACTGAACTCAGCCAGCA+TGG + chr8_3:9303853-9303872 Msa1275360:CDS 55.0%
TCCGTGTTTCCATCGGATGG+CGG + chr8_3:9304132-9304151 Msa1275360:CDS 55.0%
ACCGCCATCCGATGGAAACA+CGG - chr8_3:9304136-9304155 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 9303703 9305177 9303703 ID=Msa1275360;Name=Msa1275360
chr8_3 mRNA 9303703 9305177 9303703 ID=Msa1275360-mRNA-1;Parent=Msa1275360;Name=Msa1275360-mRNA-1;_AED=0.05;_eAED=0.05;_QI=24|1|1|1|1|1|2|363|191
chr8_3 exon 9303703 9304216 9303703 ID=Msa1275360-mRNA-1:exon:3920;Parent=Msa1275360-mRNA-1
chr8_3 exon 9304729 9305177 9304729 ID=Msa1275360-mRNA-1:exon:3921;Parent=Msa1275360-mRNA-1
chr8_3 five_prime_UTR 9303703 9303726 9303703 ID=Msa1275360-mRNA-1:five_prime_utr;Parent=Msa1275360-mRNA-1
chr8_3 CDS 9303727 9304216 9303727 ID=Msa1275360-mRNA-1:cds;Parent=Msa1275360-mRNA-1
chr8_3 CDS 9304729 9304814 9304729 ID=Msa1275360-mRNA-1:cds;Parent=Msa1275360-mRNA-1
chr8_3 three_prime_UTR 9304815 9305177 9304815 ID=Msa1275360-mRNA-1:three_prime_utr;Parent=Msa1275360-mRNA-1
Gene Sequence

>Msa1275360

ATGACAGCTGGTCACAAAATCACATCCAGACAGAGGTGGACTCCTACACCGGTTCAGCTCCAGATTCTTGAGCGTATATTCGATCAGGGAAATGGAACTCCAAGCAAAGAAAAAATCAAGGAGATTGCTACTGAACTCAGCCAGCATGGCCAAATTTCTGAAACGAATGTTTATAATTGGTTCCAAAATAGGCGTGCTAGATCGAAAAGAAAAATGCAAAATGGGGGAACTAGTAACACTGAATCAGAGGTAGAGACTGAGGTTGATTCCAAGGATAAGAAGACAAAACCAGAGGAATTTCATTCTCAACAAAATGCTGCTCTAGGGGATGAAAATTTGTGCTACCAGAACCAAGAAAAATGCTCTGAATTGCAGTACTTGAATCATGATTCTAACAAAACATATTCCGTGTTTCCATCGGATGGCGGTATAAGATCCACCAGCAATTTGAGTGGCATGTCTCTTTATGATGAAGTGCTATCAAACTCAAGGAATGACTATCTAGCTGGAAAAATGGAAGTATCTGGGAGTTACAATATATACCAGCAAGCAGAGGACTACAATTTGGCAGGTTGA

Protein sequence

>Msa1275360

MTAGHKITSRQRWTPTPVQLQILERIFDQGNGTPSKEKIKEIATELSQHGQISETNVYNWFQNRRARSKRKMQNGGTSNTESEVETEVDSKDKKTKPEEFHSQQNAALGDENLCYQNQEKCSELQYLNHDSNKTYSVFPSDGGIRSTSNLSGMSLYDEVLSNSRNDYLAGKMEVSGSYNIYQQAEDYNLAG*