Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394490 | XP_004499716.1 | 97.727 | 132 | 3 | 0 | 1 | 132 | 1 | 132 | 6.46e-91 | 269 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394490 | sp|A4FVI0|ZSWM7_DANRE | 36.923 | 130 | 74 | 4 | 7 | 131 | 8 | 134 | 1.06e-18 | 79.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394490 | A0A1S2Y5H0 | 97.727 | 132 | 3 | 0 | 1 | 132 | 1 | 132 | 3.08e-91 | 269 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011170 | Msa0394490 | 0.818397 | 2.002514e-52 | -8.615850e-47 |
| Msa0015390 | Msa0394490 | 0.807202 | 5.672746e-50 | -8.615850e-47 |
| Msa0017510 | Msa0394490 | 0.848585 | 5.579545e-60 | -8.615850e-47 |
| Msa0040450 | Msa0394490 | 0.804236 | 2.379701e-49 | -8.615850e-47 |
| Msa0086650 | Msa0394490 | 0.805957 | 1.038483e-49 | -8.615850e-47 |
| Msa0090100 | Msa0394490 | 0.814379 | 1.587299e-51 | -8.615850e-47 |
| Msa0110970 | Msa0394490 | 0.801644 | 8.171070e-49 | -8.615850e-47 |
| Msa0114060 | Msa0394490 | 0.805787 | 1.127952e-49 | -8.615850e-47 |
| Msa0115270 | Msa0394490 | 0.803438 | 3.485935e-49 | -8.615850e-47 |
| Msa0133130 | Msa0394490 | 0.801523 | 8.649711e-49 | -8.615850e-47 |
| Msa0140780 | Msa0394490 | 0.804622 | 1.977132e-49 | -8.615850e-47 |
| Msa0145440 | Msa0394490 | 0.815415 | 9.354545e-52 | -8.615850e-47 |
| Msa0157290 | Msa0394490 | 0.848288 | 6.743624e-60 | -8.615850e-47 |
| Msa0200260 | Msa0394490 | 0.806222 | 9.134220e-50 | -8.615850e-47 |
| Msa0205510 | Msa0394490 | 0.826985 | 2.008498e-54 | -8.615850e-47 |
| Msa0220580 | Msa0394490 | 0.824749 | 6.820169e-54 | -8.615850e-47 |
| Msa0233300 | Msa0394490 | 0.802619 | 5.148779e-49 | -8.615850e-47 |
| Msa0237230 | Msa0394490 | 0.806678 | 7.319667e-50 | -8.615850e-47 |
| Msa0373930 | Msa0394490 | 0.807549 | 4.787875e-50 | -8.615850e-47 |
| Msa0376350 | Msa0394490 | 0.814961 | 1.179763e-51 | -8.615850e-47 |
| Msa0379640 | Msa0394490 | 0.823090 | 1.670041e-53 | -8.615850e-47 |
| Msa0394490 | Msa0416300 | 0.804347 | 2.256779e-49 | -8.615850e-47 |
| Msa0394490 | Msa0417270 | 0.806033 | 1.001278e-49 | -8.615850e-47 |
| Msa0394490 | Msa0420960 | 0.805862 | 1.087516e-49 | -8.615850e-47 |
| Msa0394490 | Msa0424790 | 0.803074 | 4.145706e-49 | -8.615850e-47 |
| Msa0394490 | Msa0440750 | 0.809604 | 1.743440e-50 | -8.615850e-47 |
| Msa0394490 | Msa0442100 | 0.885578 | 7.204139e-72 | -8.615850e-47 |
| Msa0394490 | Msa0461720 | 0.808326 | 3.271909e-50 | -8.615850e-47 |
| Msa0394490 | Msa0467060 | 0.820491 | 6.668031e-53 | -8.615850e-47 |
| Msa0394490 | Msa0479660 | 0.833654 | 4.710856e-56 | -8.615850e-47 |
| Msa0394490 | Msa0481530 | 0.803520 | 3.351465e-49 | -8.615850e-47 |
| Msa0394490 | Msa0484780 | 0.800166 | 1.637222e-48 | -8.615850e-47 |
| Msa0394490 | Msa0493630 | 0.803118 | 4.060550e-49 | -8.615850e-47 |
| Msa0394490 | Msa0498650 | 0.811829 | 5.755177e-51 | -8.615850e-47 |
| Msa0394490 | Msa0500360 | 0.813827 | 2.101511e-51 | -8.615850e-47 |
| Msa0394490 | Msa0507680 | 0.801047 | 1.082717e-48 | -8.615850e-47 |
| Msa0394490 | Msa0512750 | 0.802465 | 5.539748e-49 | -8.615850e-47 |
| Msa0394490 | Msa0512900 | 0.821581 | 3.741636e-53 | -8.615850e-47 |
| Msa0394490 | Msa0516170 | 0.807704 | 4.438229e-50 | -8.615850e-47 |
| Msa0394490 | Msa0517110 | 0.813100 | 3.036310e-51 | -8.615850e-47 |
| Msa0394490 | Msa0523460 | 0.812607 | 3.893712e-51 | -8.615850e-47 |
| Msa0394490 | Msa0529890 | 0.808131 | 3.600981e-50 | -8.615850e-47 |
| Msa0394490 | Msa0547890 | 0.804299 | 2.309440e-49 | -8.615850e-47 |
| Msa0394490 | Msa0585230 | 0.804095 | 2.546710e-49 | -8.615850e-47 |
| Msa0394490 | Msa0585560 | 0.801609 | 8.304366e-49 | -8.615850e-47 |
| Msa0394490 | Msa0593650 | 0.803501 | 3.383311e-49 | -8.615850e-47 |
| Msa0394490 | Msa0597330 | 0.808045 | 3.755328e-50 | -8.615850e-47 |
| Msa0394490 | Msa0599890 | 0.814766 | 1.303105e-51 | -8.615850e-47 |
| Msa0394490 | Msa0607050 | 0.803626 | 3.186975e-49 | -8.615850e-47 |
| Msa0394490 | Msa0608160 | 0.801512 | 8.696885e-49 | -8.615850e-47 |
| Msa0394490 | Msa0610430 | 0.813748 | 2.187707e-51 | -8.615850e-47 |
| Msa0394490 | Msa0625720 | 0.805726 | 1.161298e-49 | -8.615850e-47 |
| Msa0394490 | Msa0648080 | 0.807893 | 4.046628e-50 | -8.615850e-47 |
| Msa0394490 | Msa0657970 | 0.821659 | 3.590026e-53 | -8.615850e-47 |
| Msa0394490 | Msa0663390 | 0.806420 | 8.299052e-50 | -8.615850e-47 |
| Msa0394490 | Msa0663920 | 0.812958 | 3.262431e-51 | -8.615850e-47 |
| Msa0394490 | Msa0667050 | 0.802922 | 4.457879e-49 | -8.615850e-47 |
| Msa0394490 | Msa0672690 | 0.808569 | 2.903627e-50 | -8.615850e-47 |
| Msa0394490 | Msa0688480 | 0.803271 | 3.775891e-49 | -8.615850e-47 |
| Msa0394490 | Msa0693380 | 0.806133 | 9.535938e-50 | -8.615850e-47 |
| Msa0394490 | Msa0696640 | 0.818591 | 1.809804e-52 | -8.615850e-47 |
| Msa0394490 | Msa0709400 | 0.801943 | 7.094125e-49 | -8.615850e-47 |
| Msa0394490 | Msa0743720 | 0.830299 | 3.176356e-55 | -8.615850e-47 |
| Msa0394490 | Msa0771720 | 0.811732 | 6.043132e-51 | -8.615850e-47 |
| Msa0394490 | Msa0777230 | 0.812264 | 4.627350e-51 | -8.615850e-47 |
| Msa0394490 | Msa0787470 | 0.802644 | 5.088537e-49 | -8.615850e-47 |
| Msa0394490 | Msa0824680 | 0.801477 | 8.841084e-49 | -8.615850e-47 |
| Msa0394490 | Msa0857640 | 0.802639 | 5.098759e-49 | -8.615850e-47 |
| Msa0394490 | Msa0871270 | 0.806607 | 7.577844e-50 | -8.615850e-47 |
| Msa0394490 | Msa0880140 | 0.845391 | 4.182947e-59 | -8.615850e-47 |
| Msa0394490 | Msa0896750 | 0.808795 | 2.598397e-50 | -8.615850e-47 |
| Msa0394490 | Msa0931520 | 0.807289 | 5.436593e-50 | -8.615850e-47 |
| Msa0394490 | Msa0938220 | 0.814875 | 1.232662e-51 | -8.615850e-47 |
| Msa0394490 | Msa0942200 | 0.800642 | 1.309666e-48 | -8.615850e-47 |
| Msa0394490 | Msa0953550 | 0.812104 | 5.014340e-51 | -8.615850e-47 |
| Msa0394490 | Msa0954130 | 0.813644 | 2.305422e-51 | -8.615850e-47 |
| Msa0394490 | Msa0954550 | 0.822432 | 2.376527e-53 | -8.615850e-47 |
| Msa0394490 | Msa0975340 | 0.815526 | 8.835204e-52 | -8.615850e-47 |
| Msa0394490 | Msa0990350 | 0.803878 | 2.824536e-49 | -8.615850e-47 |
| Msa0394490 | Msa0993290 | 0.813811 | 2.118893e-51 | -8.615850e-47 |
| Msa0394490 | Msa0993600 | 0.813925 | 1.999715e-51 | -8.615850e-47 |
| Msa0394490 | Msa1014540 | 0.833253 | 5.931226e-56 | -8.615850e-47 |
| Msa0394490 | Msa1030970 | 0.810306 | 1.230963e-50 | -8.615850e-47 |
| Msa0394490 | Msa1075220 | -0.807699 | 4.449374e-50 | -8.615850e-47 |
| Msa0394490 | Msa1079590 | 0.805673 | 1.191841e-49 | -8.615850e-47 |
| Msa0394490 | Msa1082500 | 0.842825 | 2.041505e-58 | -8.615850e-47 |
| Msa0394490 | Msa1085200 | 0.800089 | 1.697095e-48 | -8.615850e-47 |
| Msa0394490 | Msa1100050 | 0.800601 | 1.335303e-48 | -8.615850e-47 |
| Msa0394490 | Msa1116130 | -0.800808 | 1.211201e-48 | -8.615850e-47 |
| Msa0394490 | Msa1124960 | 0.802071 | 6.676571e-49 | -8.615850e-47 |
| Msa0394490 | Msa1154280 | 0.806310 | 8.751157e-50 | -8.615850e-47 |
| Msa0394490 | Msa1162550 | -0.813310 | 2.730267e-51 | -8.615850e-47 |
| Msa0394490 | Msa1167340 | 0.803074 | 4.145706e-49 | -8.615850e-47 |
| Msa0394490 | Msa1174040 | 0.822088 | 2.856301e-53 | -8.615850e-47 |
| Msa0394490 | Msa1190930 | 0.804956 | 1.684357e-49 | -8.615850e-47 |
| Msa0394490 | Msa1226660 | 0.808834 | 2.549174e-50 | -8.615850e-47 |
| Msa0394490 | Msa1233500 | 0.803385 | 3.574827e-49 | -8.615850e-47 |
| Msa0394490 | Msa1233890 | 0.836090 | 1.147350e-56 | -8.615850e-47 |
| Msa0394490 | Msa1242220 | 0.802060 | 6.710829e-49 | -8.615850e-47 |
| Msa0394490 | Msa1244250 | 0.813424 | 2.577170e-51 | -8.615850e-47 |
| Msa0394490 | Msa1244610 | 0.800930 | 1.143800e-48 | -8.615850e-47 |
| Msa0394490 | Msa1247250 | 0.825633 | 4.213702e-54 | -8.615850e-47 |
| Msa0394490 | Msa1249490 | 0.806412 | 8.329276e-50 | -8.615850e-47 |
| Msa0394490 | Msa1251730 | 0.829981 | 3.797635e-55 | -8.615850e-47 |
| Msa0394490 | Msa1253020 | 0.805160 | 1.526355e-49 | -8.615850e-47 |
| Msa0394490 | Msa1275360 | 0.805817 | 1.111304e-49 | -8.615850e-47 |
| Msa0394490 | Msa1279210 | 0.809306 | 2.019430e-50 | -8.615850e-47 |
| Msa0394490 | Msa1283860 | 0.826819 | 2.200028e-54 | -8.615850e-47 |
| Msa0394490 | Msa1284680 | 0.818944 | 1.504842e-52 | -8.615850e-47 |
| Msa0394490 | Msa1288420 | 0.804723 | 1.884041e-49 | -8.615850e-47 |
| Msa0394490 | Msa1293280 | 0.801950 | 7.068489e-49 | -8.615850e-47 |
| Msa0394490 | Msa1293510 | 0.806961 | 6.378889e-50 | -8.615850e-47 |
| Msa0394490 | Msa1305340 | 0.822546 | 2.235519e-53 | -8.615850e-47 |
| Msa0394490 | Msa1322890 | 0.805975 | 1.029617e-49 | -8.615850e-47 |
| Msa0394490 | Msa1340650 | 0.807780 | 4.277013e-50 | -8.615850e-47 |
| Msa0394490 | Msa1348950 | 0.803292 | 3.736664e-49 | -8.615850e-47 |
| Msa0394490 | Msa1372760 | 0.804497 | 2.099705e-49 | -8.615850e-47 |
| Msa0394490 | Msa1390050 | 0.802887 | 4.531514e-49 | -8.615850e-47 |
| Msa0394490 | Msa1392260 | 0.800574 | 1.352283e-48 | -8.615850e-47 |
| Msa0394490 | Msa1411020 | 0.810347 | 1.205975e-50 | -8.615850e-47 |
| Msa0394490 | Msa1420490 | 0.811111 | 8.243712e-51 | -8.615850e-47 |
| Msa0394490 | Msa1423390 | 0.810741 | 9.915840e-51 | -8.615850e-47 |
| Msa0394490 | Msa1424290 | 0.807062 | 6.072597e-50 | -8.615850e-47 |
| Msa0394490 | Msa1434350 | 0.807726 | 4.391171e-50 | -8.615850e-47 |
| Msa0394490 | Msa1439320 | 0.815019 | 1.145505e-51 | -8.615850e-47 |
| Msa0394490 | Msa1440370 | 0.805694 | 1.179430e-49 | -8.615850e-47 |
| Msa0394490 | Msa1440810 | 0.808423 | 3.119806e-50 | -8.615850e-47 |
| Msa0394490 | Msa1451550 | 0.808727 | 2.687335e-50 | -8.615850e-47 |
| Msa0394490 | Msa1452240 | 0.806403 | 8.365428e-50 | -8.615850e-47 |
| Msa0243100 | Msa0394490 | 0.836935 | 6.988697e-57 | -8.615850e-47 |
| Msa0243710 | Msa0394490 | 0.817481 | 3.224549e-52 | -8.615850e-47 |
| Msa0243720 | Msa0394490 | 0.815036 | 1.135793e-51 | -8.615850e-47 |
| Msa0282250 | Msa0394490 | 0.809334 | 1.991503e-50 | -8.615850e-47 |
| Msa0287650 | Msa0394490 | 0.825621 | 4.242048e-54 | -8.615850e-47 |
| Msa0288100 | Msa0394490 | 0.834215 | 3.409126e-56 | -8.615850e-47 |
| Msa0291500 | Msa0394490 | 0.804350 | 2.253649e-49 | -8.615850e-47 |
| Msa0311700 | Msa0394490 | 0.800587 | 1.344171e-48 | -8.615850e-47 |
| Msa0344910 | Msa0394490 | 0.810742 | 9.908684e-51 | -8.615850e-47 |
| Msa0347770 | Msa0394490 | 0.963071 | 1.224196e-121 | -8.615850e-47 |
| Msa0359030 | Msa0394490 | 0.820519 | 6.570320e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394490 | MtrunA17_Chr3g0080161 | 97.727 | 132 | 3 | 0 | 1 | 132 | 1 | 132 | 1.54e-94 | 268 |
| Msa0394490 | MtrunA17_Chr4g0022281 | 94.286 | 35 | 2 | 0 | 29 | 63 | 8 | 42 | 1.18e-18 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394490 | AT4G33925.1 | 68.182 | 132 | 42 | 0 | 1 | 132 | 1 | 132 | 4.66e-65 | 194 |
| Msa0394490 | AT4G33925.2 | 67.227 | 119 | 39 | 0 | 1 | 119 | 1 | 119 | 9.73e-58 | 175 |
Find 25 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTGGAAGGTTTATCTTTC+AGG | 0.114852 | 3_2:+9135036 | Msa0394490:CDS |
| AACAGATTACATTTCTTATT+TGG | 0.148809 | 3_2:+9134947 | Msa0394490:intron |
| AGAGGTGTTAAGAAGATTTC+TGG | 0.215942 | 3_2:+9135007 | Msa0394490:CDS |
| GCAAGACTCGCTGCATCATT+AGG | 0.352521 | 3_2:+9136028 | Msa0394490:CDS |
| ATCATAGAAGAAAGAATAAC+AGG | 0.376490 | 3_2:-9135824 | None:intergenic |
| GAAGATGAGTGCAAGTAGTT+TGG | 0.377089 | 3_2:+9134608 | Msa0394490:exon |
| AAAACAAAGACTTTGCTTTG+TGG | 0.399607 | 3_2:+9136132 | Msa0394490:three_prime_UTR |
| TTTCAGCAAAACACAGATAC+TGG | 0.406479 | 3_2:-9135792 | None:intergenic |
| CTTATTTGGTAAGAACTTTG+AGG | 0.428015 | 3_2:+9134961 | Msa0394490:CDS |
| CTTAGGTTACAGGGGAATCC+AGG | 0.438788 | 3_2:+9135761 | Msa0394490:intron |
| TTATTTGGTAAGAACTTTGA+GGG | 0.454021 | 3_2:+9134962 | Msa0394490:CDS |
| GTTTGGTAGCAGATGAAGTG+TGG | 0.490865 | 3_2:+9134625 | Msa0394490:CDS |
| CTGAAAGATAAACCTTCCAC+TGG | 0.506282 | 3_2:-9135035 | None:intergenic |
| TGAGGGAGCTACTAGAATAG+TGG | 0.534495 | 3_2:+9134979 | Msa0394490:CDS |
| TCTATGATGTTGTCAACAGA+GGG | 0.540121 | 3_2:+9135839 | Msa0394490:CDS |
| TTCTATGATGTTGTCAACAG+AGG | 0.568989 | 3_2:+9135838 | Msa0394490:CDS |
| TTTCTGGTGACCCCAGTGGA+AGG | 0.592488 | 3_2:+9135023 | Msa0394490:CDS |
| CGAAGTCAAGGTATCTGATG+AGG | 0.606772 | 3_2:+9136060 | Msa0394490:CDS |
| TGAAAGATAAACCTTCCACT+GGG | 0.609527 | 3_2:-9135034 | None:intergenic |
| AGGATCATATGTCGAAGTCA+AGG | 0.611050 | 3_2:+9136048 | Msa0394490:CDS |
| CAAATTGAATCAACACACAC+AGG | 0.654795 | 3_2:+9134651 | Msa0394490:CDS |
| AAGATTTCTGGTGACCCCAG+TGG | 0.679035 | 3_2:+9135019 | Msa0394490:CDS |
| ACTAGAATAGTGGATCAAAG+AGG | 0.694774 | 3_2:+9134989 | Msa0394490:CDS |
| CTATGATGTTGTCAACAGAG+GGG | 0.760944 | 3_2:+9135840 | Msa0394490:CDS |
| GAAAGATAAACCTTCCACTG+GGG | 0.779053 | 3_2:-9135033 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CCAAAAATAATAAAGTAAAA+AGG | - | chr3_2:9134843-9134862 | None:intergenic | 15.0% |
| !!! | CCTTTTTACTTTATTATTTT+TGG | + | chr3_2:9134840-9134859 | Msa0394490:intron | 15.0% |
| !!! | AAAATTGATTTTGACATATT+TGG | - | chr3_2:9135493-9135512 | None:intergenic | 15.0% |
| !! | CCAAAAATAATAAAGTAAAA+AGG | - | chr3_2:9134843-9134862 | None:intergenic | 15.0% |
| !!! | CCTTTTTACTTTATTATTTT+TGG | + | chr3_2:9134840-9134859 | Msa0394490:intron | 15.0% |
| !!! | AAAATTGATTTTGACATATT+TGG | - | chr3_2:9135493-9135512 | None:intergenic | 15.0% |
| !! | AATTAAAGCAAAAATGTGTT+TGG | - | chr3_2:9134735-9134754 | None:intergenic | 20.0% |
| !! | TTTCTTAACTAATATAGCAT+AGG | + | chr3_2:9134873-9134892 | Msa0394490:intron | 20.0% |
| !!! | TTTGAACTTTGTATTTTTGT+TGG | + | chr3_2:9134907-9134926 | Msa0394490:intron | 20.0% |
| !! | AACAGATTACATTTCTTATT+TGG | + | chr3_2:9134947-9134966 | Msa0394490:intron | 20.0% |
| !! | AAACAAACAAACAAAAACAA+AGG | - | chr3_2:9135095-9135114 | None:intergenic | 20.0% |
| !! | TCAATTGAATAGTTTAAACT+AGG | + | chr3_2:9135150-9135169 | Msa0394490:intron | 20.0% |
| !! | AGTTGAACAATAAATTATAG+AGG | + | chr3_2:9135390-9135409 | Msa0394490:intron | 20.0% |
| !!! | ATCTTTTAGCTAATTATTAG+CGG | - | chr3_2:9135650-9135669 | None:intergenic | 20.0% |
| !! | AAAAATCGATCTAATTCTAA+TGG | - | chr3_2:9136247-9136266 | None:intergenic | 20.0% |
| !! | AATTAAAGCAAAAATGTGTT+TGG | - | chr3_2:9134735-9134754 | None:intergenic | 20.0% |
| !! | TTTCTTAACTAATATAGCAT+AGG | + | chr3_2:9134873-9134892 | Msa0394490:intron | 20.0% |
| !!! | TTTGAACTTTGTATTTTTGT+TGG | + | chr3_2:9134907-9134926 | Msa0394490:intron | 20.0% |
| !! | AACAGATTACATTTCTTATT+TGG | + | chr3_2:9134947-9134966 | Msa0394490:intron | 20.0% |
| !! | AAACAAACAAACAAAAACAA+AGG | - | chr3_2:9135095-9135114 | None:intergenic | 20.0% |
| !! | TCAATTGAATAGTTTAAACT+AGG | + | chr3_2:9135150-9135169 | Msa0394490:intron | 20.0% |
| !! | AGTTGAACAATAAATTATAG+AGG | + | chr3_2:9135390-9135409 | Msa0394490:intron | 20.0% |
| !!! | ATCTTTTAGCTAATTATTAG+CGG | - | chr3_2:9135650-9135669 | None:intergenic | 20.0% |
| !! | AAAAATCGATCTAATTCTAA+TGG | - | chr3_2:9136247-9136266 | None:intergenic | 20.0% |
| !!! | CAAAAATGTGTTTGGAATTT+TGG | - | chr3_2:9134727-9134746 | None:intergenic | 25.0% |
| ! | TTATTTGGTAAGAACTTTGA+GGG | + | chr3_2:9134962-9134981 | Msa0394490:CDS | 25.0% |
| ! | AGGCAAAATCAATTATACTT+GGG | + | chr3_2:9135455-9135474 | Msa0394490:intron | 25.0% |
| !!! | ATTTTGACATATTTGGACTT+CGG | - | chr3_2:9135486-9135505 | None:intergenic | 25.0% |
| ! | GAAAGTAATTAGTGTATGTT+TGG | - | chr3_2:9135554-9135573 | None:intergenic | 25.0% |
| !! | CAAATTTTCATTGCAATGTA+AGG | + | chr3_2:9135689-9135708 | Msa0394490:intron | 25.0% |
| ! | ATCATAGAAGAAAGAATAAC+AGG | - | chr3_2:9135827-9135846 | None:intergenic | 25.0% |
| ! | GAAGAAAATAAAAGACAATC+AGG | - | chr3_2:9135895-9135914 | None:intergenic | 25.0% |
| !! | TAAAAAGAGTGCAAATAGAT+TGG | + | chr3_2:9136189-9136208 | Msa0394490:three_prime_UTR | 25.0% |
| !!! | CAAAAATGTGTTTGGAATTT+TGG | - | chr3_2:9134727-9134746 | None:intergenic | 25.0% |
| ! | TTATTTGGTAAGAACTTTGA+GGG | + | chr3_2:9134962-9134981 | Msa0394490:CDS | 25.0% |
| ! | AGGCAAAATCAATTATACTT+GGG | + | chr3_2:9135455-9135474 | Msa0394490:intron | 25.0% |
| !!! | ATTTTGACATATTTGGACTT+CGG | - | chr3_2:9135486-9135505 | None:intergenic | 25.0% |
| ! | GAAAGTAATTAGTGTATGTT+TGG | - | chr3_2:9135554-9135573 | None:intergenic | 25.0% |
| !! | CAAATTTTCATTGCAATGTA+AGG | + | chr3_2:9135689-9135708 | Msa0394490:intron | 25.0% |
| ! | ATCATAGAAGAAAGAATAAC+AGG | - | chr3_2:9135827-9135846 | None:intergenic | 25.0% |
| ! | GAAGAAAATAAAAGACAATC+AGG | - | chr3_2:9135895-9135914 | None:intergenic | 25.0% |
| !! | TAAAAAGAGTGCAAATAGAT+TGG | + | chr3_2:9136189-9136208 | Msa0394490:three_prime_UTR | 25.0% |
| !! | AACATGTTCTGTTTTGTTGA+AGG | + | chr3_2:9134564-9134583 | Msa0394490:five_prime_UTR | 30.0% |
| !! | ACATGTTCTGTTTTGTTGAA+GGG | + | chr3_2:9134565-9134584 | Msa0394490:five_prime_UTR | 30.0% |
| CAACAAAAGTTAGTGTGAAA+TGG | - | chr3_2:9134759-9134778 | None:intergenic | 30.0% | |
| TGTGACATGAAAATGAAAAG+GGG | - | chr3_2:9134782-9134801 | None:intergenic | 30.0% | |
| CTGTGACATGAAAATGAAAA+GGG | - | chr3_2:9134783-9134802 | None:intergenic | 30.0% | |
| ACTGTGACATGAAAATGAAA+AGG | - | chr3_2:9134784-9134803 | None:intergenic | 30.0% | |
| CTTATTTGGTAAGAACTTTG+AGG | + | chr3_2:9134961-9134980 | Msa0394490:CDS | 30.0% | |
| TCTTCTTCATTCAACAGATT+TGG | + | chr3_2:9135119-9135138 | Msa0394490:intron | 30.0% | |
| CTTCTTCATTCAACAGATTT+GGG | + | chr3_2:9135120-9135139 | Msa0394490:intron | 30.0% | |
| TTCTTCATTCAACAGATTTG+GGG | + | chr3_2:9135121-9135140 | Msa0394490:intron | 30.0% | |
| AACTTGAAGTCACAATTTAG+AGG | - | chr3_2:9135421-9135440 | None:intergenic | 30.0% | |
| ! | CTTCAAGTTAGAATCAAATC+TGG | + | chr3_2:9135432-9135451 | Msa0394490:intron | 30.0% |
| GAGGCAAAATCAATTATACT+TGG | + | chr3_2:9135454-9135473 | Msa0394490:intron | 30.0% | |
| !! | GGAGTCAAAATTGTTTCTAA+CGG | - | chr3_2:9135519-9135538 | None:intergenic | 30.0% |
| CTAAAAGATAGTAATACTGC+AGG | + | chr3_2:9135661-9135680 | Msa0394490:intron | 30.0% | |
| CACATCACAATTTCAATCAA+GGG | - | chr3_2:9135726-9135745 | None:intergenic | 30.0% | |
| ! | TGCATATTCTCCATTTTCTT+AGG | + | chr3_2:9135744-9135763 | Msa0394490:intron | 30.0% |
| AAAACAAAGACTTTGCTTTG+TGG | + | chr3_2:9136132-9136151 | Msa0394490:three_prime_UTR | 30.0% | |
| ! | TCTATTTGCACTCTTTTTAC+AGG | - | chr3_2:9136188-9136207 | None:intergenic | 30.0% |
| CAACAAAACAGAACATGTTT+CGG | - | chr3_2:9134563-9134582 | None:intergenic | 30.0% | |
| !! | AACATGTTCTGTTTTGTTGA+AGG | + | chr3_2:9134564-9134583 | Msa0394490:five_prime_UTR | 30.0% |
| !! | ACATGTTCTGTTTTGTTGAA+GGG | + | chr3_2:9134565-9134584 | Msa0394490:five_prime_UTR | 30.0% |
| CAACAAAAGTTAGTGTGAAA+TGG | - | chr3_2:9134759-9134778 | None:intergenic | 30.0% | |
| TGTGACATGAAAATGAAAAG+GGG | - | chr3_2:9134782-9134801 | None:intergenic | 30.0% | |
| CTGTGACATGAAAATGAAAA+GGG | - | chr3_2:9134783-9134802 | None:intergenic | 30.0% | |
| ACTGTGACATGAAAATGAAA+AGG | - | chr3_2:9134784-9134803 | None:intergenic | 30.0% | |
| CTTATTTGGTAAGAACTTTG+AGG | + | chr3_2:9134961-9134980 | Msa0394490:CDS | 30.0% | |
| TCTTCTTCATTCAACAGATT+TGG | + | chr3_2:9135119-9135138 | Msa0394490:intron | 30.0% | |
| CTTCTTCATTCAACAGATTT+GGG | + | chr3_2:9135120-9135139 | Msa0394490:intron | 30.0% | |
| TTCTTCATTCAACAGATTTG+GGG | + | chr3_2:9135121-9135140 | Msa0394490:intron | 30.0% | |
| AACTTGAAGTCACAATTTAG+AGG | - | chr3_2:9135421-9135440 | None:intergenic | 30.0% | |
| ! | CTTCAAGTTAGAATCAAATC+TGG | + | chr3_2:9135432-9135451 | Msa0394490:intron | 30.0% |
| GAGGCAAAATCAATTATACT+TGG | + | chr3_2:9135454-9135473 | Msa0394490:intron | 30.0% | |
| !! | GGAGTCAAAATTGTTTCTAA+CGG | - | chr3_2:9135519-9135538 | None:intergenic | 30.0% |
| CTAAAAGATAGTAATACTGC+AGG | + | chr3_2:9135661-9135680 | Msa0394490:intron | 30.0% | |
| CACATCACAATTTCAATCAA+GGG | - | chr3_2:9135726-9135745 | None:intergenic | 30.0% | |
| ! | TGCATATTCTCCATTTTCTT+AGG | + | chr3_2:9135744-9135763 | Msa0394490:intron | 30.0% |
| AAAACAAAGACTTTGCTTTG+TGG | + | chr3_2:9136132-9136151 | Msa0394490:three_prime_UTR | 30.0% | |
| ! | TCTATTTGCACTCTTTTTAC+AGG | - | chr3_2:9136188-9136207 | None:intergenic | 30.0% |
| CAAATTGAATCAACACACAC+AGG | + | chr3_2:9134651-9134670 | Msa0394490:CDS | 35.0% | |
| !! | ACTAGAATAGTGGATCAAAG+AGG | + | chr3_2:9134989-9135008 | Msa0394490:CDS | 35.0% |
| !! | AGAGGTGTTAAGAAGATTTC+TGG | + | chr3_2:9135007-9135026 | Msa0394490:CDS | 35.0% |
| TGAAAGATAAACCTTCCACT+GGG | - | chr3_2:9135037-9135056 | None:intergenic | 35.0% | |
| AGGTAAATGCAAAGAAAGAG+TGG | - | chr3_2:9135075-9135094 | None:intergenic | 35.0% | |
| ! | ATGCCTTCAATCAAAAGTGT+CGG | - | chr3_2:9135242-9135261 | None:intergenic | 35.0% |
| GTGTCAAACACAAACATATG+TGG | + | chr3_2:9135284-9135303 | Msa0394490:intron | 35.0% | |
| CAAGTTAGAATCAAATCTGG+AGG | + | chr3_2:9135435-9135454 | Msa0394490:intron | 35.0% | |
| GCACATCACAATTTCAATCA+AGG | - | chr3_2:9135727-9135746 | None:intergenic | 35.0% | |
| ! | TCTCCATTTTCTTAGGTTAC+AGG | + | chr3_2:9135751-9135770 | Msa0394490:intron | 35.0% |
| ! | CTCCATTTTCTTAGGTTACA+GGG | + | chr3_2:9135752-9135771 | Msa0394490:intron | 35.0% |
| ! | TCCATTTTCTTAGGTTACAG+GGG | + | chr3_2:9135753-9135772 | Msa0394490:intron | 35.0% |
| TTTCAGCAAAACACAGATAC+TGG | - | chr3_2:9135795-9135814 | None:intergenic | 35.0% | |
| TTCTATGATGTTGTCAACAG+AGG | + | chr3_2:9135838-9135857 | Msa0394490:CDS | 35.0% | |
| TCTATGATGTTGTCAACAGA+GGG | + | chr3_2:9135839-9135858 | Msa0394490:CDS | 35.0% | |
| ! | AGACAATCAGGAAGTGTATA+TGG | - | chr3_2:9135883-9135902 | None:intergenic | 35.0% |
| CAAATTGAATCAACACACAC+AGG | + | chr3_2:9134651-9134670 | Msa0394490:CDS | 35.0% | |
| !! | ACTAGAATAGTGGATCAAAG+AGG | + | chr3_2:9134989-9135008 | Msa0394490:CDS | 35.0% |
| !! | AGAGGTGTTAAGAAGATTTC+TGG | + | chr3_2:9135007-9135026 | Msa0394490:CDS | 35.0% |
| TGAAAGATAAACCTTCCACT+GGG | - | chr3_2:9135037-9135056 | None:intergenic | 35.0% | |
| AGGTAAATGCAAAGAAAGAG+TGG | - | chr3_2:9135075-9135094 | None:intergenic | 35.0% | |
| ! | ATGCCTTCAATCAAAAGTGT+CGG | - | chr3_2:9135242-9135261 | None:intergenic | 35.0% |
| GTGTCAAACACAAACATATG+TGG | + | chr3_2:9135284-9135303 | Msa0394490:intron | 35.0% | |
| CAAGTTAGAATCAAATCTGG+AGG | + | chr3_2:9135435-9135454 | Msa0394490:intron | 35.0% | |
| GCACATCACAATTTCAATCA+AGG | - | chr3_2:9135727-9135746 | None:intergenic | 35.0% | |
| ! | TCTCCATTTTCTTAGGTTAC+AGG | + | chr3_2:9135751-9135770 | Msa0394490:intron | 35.0% |
| ! | CTCCATTTTCTTAGGTTACA+GGG | + | chr3_2:9135752-9135771 | Msa0394490:intron | 35.0% |
| ! | TCCATTTTCTTAGGTTACAG+GGG | + | chr3_2:9135753-9135772 | Msa0394490:intron | 35.0% |
| TTTCAGCAAAACACAGATAC+TGG | - | chr3_2:9135795-9135814 | None:intergenic | 35.0% | |
| TTCTATGATGTTGTCAACAG+AGG | + | chr3_2:9135838-9135857 | Msa0394490:CDS | 35.0% | |
| TCTATGATGTTGTCAACAGA+GGG | + | chr3_2:9135839-9135858 | Msa0394490:CDS | 35.0% | |
| ! | AGACAATCAGGAAGTGTATA+TGG | - | chr3_2:9135883-9135902 | None:intergenic | 35.0% |
| GAAGATGAGTGCAAGTAGTT+TGG | + | chr3_2:9134608-9134627 | Msa0394490:exon | 40.0% | |
| GAAAGATAAACCTTCCACTG+GGG | - | chr3_2:9135036-9135055 | None:intergenic | 40.0% | |
| CTGAAAGATAAACCTTCCAC+TGG | - | chr3_2:9135038-9135057 | None:intergenic | 40.0% | |
| CAGTGGAAGGTTTATCTTTC+AGG | + | chr3_2:9135036-9135055 | Msa0394490:CDS | 40.0% | |
| ATGTTTGTGTTTGACACCGA+CGG | - | chr3_2:9135281-9135300 | None:intergenic | 40.0% | |
| !!! | CAATTTTGACTCCTCCAAAG+TGG | + | chr3_2:9135526-9135545 | Msa0394490:intron | 40.0% |
| ! | TATGTTTGGTTCCACTTTGG+AGG | - | chr3_2:9135540-9135559 | None:intergenic | 40.0% |
| ! | GTGTATGTTTGGTTCCACTT+TGG | - | chr3_2:9135543-9135562 | None:intergenic | 40.0% |
| GTCTGTTGTATCTGCTTCAT+TGG | + | chr3_2:9135621-9135640 | Msa0394490:intron | 40.0% | |
| TCCCCTGTAACCTAAGAAAA+TGG | - | chr3_2:9135757-9135776 | None:intergenic | 40.0% | |
| !!! | CAGATACTGGTCTTTTTTCC+TGG | - | chr3_2:9135782-9135801 | None:intergenic | 40.0% |
| CTATGATGTTGTCAACAGAG+GGG | + | chr3_2:9135840-9135859 | Msa0394490:CDS | 40.0% | |
| TCAGCACTAGAACGATACTA+AGG | - | chr3_2:9135940-9135959 | None:intergenic | 40.0% | |
| AGGATCATATGTCGAAGTCA+AGG | + | chr3_2:9136048-9136067 | Msa0394490:CDS | 40.0% | |
| GAAGATGAGTGCAAGTAGTT+TGG | + | chr3_2:9134608-9134627 | Msa0394490:exon | 40.0% | |
| GAAAGATAAACCTTCCACTG+GGG | - | chr3_2:9135036-9135055 | None:intergenic | 40.0% | |
| CTGAAAGATAAACCTTCCAC+TGG | - | chr3_2:9135038-9135057 | None:intergenic | 40.0% | |
| CAGTGGAAGGTTTATCTTTC+AGG | + | chr3_2:9135036-9135055 | Msa0394490:CDS | 40.0% | |
| ATGTTTGTGTTTGACACCGA+CGG | - | chr3_2:9135281-9135300 | None:intergenic | 40.0% | |
| !!! | CAATTTTGACTCCTCCAAAG+TGG | + | chr3_2:9135526-9135545 | Msa0394490:intron | 40.0% |
| ! | TATGTTTGGTTCCACTTTGG+AGG | - | chr3_2:9135540-9135559 | None:intergenic | 40.0% |
| ! | GTGTATGTTTGGTTCCACTT+TGG | - | chr3_2:9135543-9135562 | None:intergenic | 40.0% |
| GTCTGTTGTATCTGCTTCAT+TGG | + | chr3_2:9135621-9135640 | Msa0394490:intron | 40.0% | |
| TCCCCTGTAACCTAAGAAAA+TGG | - | chr3_2:9135757-9135776 | None:intergenic | 40.0% | |
| !!! | CAGATACTGGTCTTTTTTCC+TGG | - | chr3_2:9135782-9135801 | None:intergenic | 40.0% |
| CTATGATGTTGTCAACAGAG+GGG | + | chr3_2:9135840-9135859 | Msa0394490:CDS | 40.0% | |
| TCAGCACTAGAACGATACTA+AGG | - | chr3_2:9135940-9135959 | None:intergenic | 40.0% | |
| AGGATCATATGTCGAAGTCA+AGG | + | chr3_2:9136048-9136067 | Msa0394490:CDS | 40.0% | |
| ! | GTTTGGTAGCAGATGAAGTG+TGG | + | chr3_2:9134625-9134644 | Msa0394490:CDS | 45.0% |
| TGAGGGAGCTACTAGAATAG+TGG | + | chr3_2:9134979-9134998 | Msa0394490:CDS | 45.0% | |
| !! | GCACCGACACTTTTGATTGA+AGG | + | chr3_2:9135236-9135255 | Msa0394490:intron | 45.0% |
| TGTTTGTGTTTGACACCGAC+GGG | - | chr3_2:9135280-9135299 | None:intergenic | 45.0% | |
| ! | CGAAGTCAAGGTATCTGATG+AGG | + | chr3_2:9136060-9136079 | Msa0394490:CDS | 45.0% |
| ! | GTTTGGTAGCAGATGAAGTG+TGG | + | chr3_2:9134625-9134644 | Msa0394490:CDS | 45.0% |
| TGAGGGAGCTACTAGAATAG+TGG | + | chr3_2:9134979-9134998 | Msa0394490:CDS | 45.0% | |
| !! | GCACCGACACTTTTGATTGA+AGG | + | chr3_2:9135236-9135255 | Msa0394490:intron | 45.0% |
| TGTTTGTGTTTGACACCGAC+GGG | - | chr3_2:9135280-9135299 | None:intergenic | 45.0% | |
| ! | CGAAGTCAAGGTATCTGATG+AGG | + | chr3_2:9136060-9136079 | Msa0394490:CDS | 45.0% |
| !! | TTTCTTAATAAAAAATAAAA+GGG | - | chr3_2:9136115-9136134 | None:intergenic | 5.0% |
| !!! | TTTTCTTAATAAAAAATAAA+AGG | - | chr3_2:9136116-9136135 | None:intergenic | 5.0% |
| !! | TTTCTTAATAAAAAATAAAA+GGG | - | chr3_2:9136115-9136134 | None:intergenic | 5.0% |
| !!! | TTTTCTTAATAAAAAATAAA+AGG | - | chr3_2:9136116-9136135 | None:intergenic | 5.0% |
| !! | AAGATTTCTGGTGACCCCAG+TGG | + | chr3_2:9135019-9135038 | Msa0394490:CDS | 50.0% |
| CTTAGGTTACAGGGGAATCC+AGG | + | chr3_2:9135761-9135780 | Msa0394490:intron | 50.0% | |
| GCAAGACTCGCTGCATCATT+AGG | + | chr3_2:9136028-9136047 | Msa0394490:CDS | 50.0% | |
| !! | AAGATTTCTGGTGACCCCAG+TGG | + | chr3_2:9135019-9135038 | Msa0394490:CDS | 50.0% |
| CTTAGGTTACAGGGGAATCC+AGG | + | chr3_2:9135761-9135780 | Msa0394490:intron | 50.0% | |
| GCAAGACTCGCTGCATCATT+AGG | + | chr3_2:9136028-9136047 | Msa0394490:CDS | 50.0% | |
| ! | TTTCTGGTGACCCCAGTGGA+AGG | + | chr3_2:9135023-9135042 | Msa0394490:CDS | 55.0% |
| TGTTTGACACCGACGGGTGT+CGG | - | chr3_2:9135274-9135293 | None:intergenic | 55.0% | |
| ! | TTTCTGGTGACCCCAGTGGA+AGG | + | chr3_2:9135023-9135042 | Msa0394490:CDS | 55.0% |
| TGTTTGACACCGACGGGTGT+CGG | - | chr3_2:9135274-9135293 | None:intergenic | 55.0% | |
| GTCGAGTGTCCGACACCCGT+CGG | + | chr3_2:9135262-9135281 | Msa0394490:intron | 65.0% | |
| GTCGAGTGTCCGACACCCGT+CGG | + | chr3_2:9135262-9135281 | Msa0394490:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 9134562 | 9136268 | 9134562 | ID=Msa0394490;Name=Msa0394490 |
| chr3_2 | mRNA | 9134562 | 9136268 | 9134562 | ID=Msa0394490-mRNA-1;Parent=Msa0394490;Name=Msa0394490-mRNA-1;_AED=0.09;_eAED=0.09;_QI=50|1|1|1|0.5|0.6|5|157|132 |
| chr3_2 | exon | 9134562 | 9134672 | 9134562 | ID=Msa0394490-mRNA-1:exon:2399;Parent=Msa0394490-mRNA-1 |
| chr3_2 | exon | 9134803 | 9134824 | 9134803 | ID=Msa0394490-mRNA-1:exon:2400;Parent=Msa0394490-mRNA-1 |
| chr3_2 | exon | 9134952 | 9135057 | 9134952 | ID=Msa0394490-mRNA-1:exon:2401;Parent=Msa0394490-mRNA-1 |
| chr3_2 | exon | 9135766 | 9135873 | 9135766 | ID=Msa0394490-mRNA-1:exon:2402;Parent=Msa0394490-mRNA-1 |
| chr3_2 | exon | 9136010 | 9136268 | 9136010 | ID=Msa0394490-mRNA-1:exon:2403;Parent=Msa0394490-mRNA-1 |
| chr3_2 | five_prime_UTR | 9134562 | 9134611 | 9134562 | ID=Msa0394490-mRNA-1:five_prime_utr;Parent=Msa0394490-mRNA-1 |
| chr3_2 | CDS | 9134612 | 9134672 | 9134612 | ID=Msa0394490-mRNA-1:cds;Parent=Msa0394490-mRNA-1 |
| chr3_2 | CDS | 9134803 | 9134824 | 9134803 | ID=Msa0394490-mRNA-1:cds;Parent=Msa0394490-mRNA-1 |
| chr3_2 | CDS | 9134952 | 9135057 | 9134952 | ID=Msa0394490-mRNA-1:cds;Parent=Msa0394490-mRNA-1 |
| chr3_2 | CDS | 9135766 | 9135873 | 9135766 | ID=Msa0394490-mRNA-1:cds;Parent=Msa0394490-mRNA-1 |
| chr3_2 | CDS | 9136010 | 9136111 | 9136010 | ID=Msa0394490-mRNA-1:cds;Parent=Msa0394490-mRNA-1 |
| chr3_2 | three_prime_UTR | 9136112 | 9136268 | 9136112 | ID=Msa0394490-mRNA-1:three_prime_utr;Parent=Msa0394490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
