AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1345360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1345360 MtrunA17_Chr2g0287881 86.139 404 31 2 1 404 1 379 0.0 684
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1345360 AT5G19150.2 62.500 376 102 7 29 400 25 365 2.13e-153 438
Msa1345360 AT5G19150.1 62.500 376 102 7 29 400 25 365 2.13e-153 438

Find 115 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGAGCTTAGTACCTTTC+TGG 0.072207 tig0007116:+47044 Msa1345360:five_prime_UTR
AATTGGTTTCAAACCTTATT+TGG 0.090433 tig0007116:-46696 Msa1345370:CDS
CGCTTATATTCATTGACATT+TGG 0.238912 tig0007116:-49047 None:intergenic
GGCCAAGGCGATATCCTTTC+TGG 0.241899 tig0007116:+50367 Msa1345360:CDS
ACTTGAGCTTTCTCCAAATA+AGG 0.250781 tig0007116:+46683 Msa1345360:five_prime_UTR
GCTTATATTCATTGACATTT+GGG 0.266006 tig0007116:-49046 None:intergenic
TATAAAATGTGTCGAGTTAC+TGG 0.275300 tig0007116:+51635 Msa1345360:three_prime_UTR
GTCAAAACAGTTAGCATCTA+TGG 0.286837 tig0007116:+50325 Msa1345360:intron
TTCATCTTCATATCTGATTT+CGG 0.288987 tig0007116:+46779 Msa1345360:five_prime_UTR
CTCAAGTCTTTGTTTGTTCA+AGG 0.299635 tig0007116:+51727 Msa1345360:three_prime_UTR
CAAGCAAATCACCAGATAAT+TGG 0.300290 tig0007116:+46407 Msa1345360:five_prime_UTR
GTTGATTGTGCACCCTGTTT+TGG 0.311517 tig0007116:+48491 Msa1345360:CDS
CTTTATGTCTACTTCGATCT+AGG 0.313756 tig0007116:-47635 None:intergenic
CTTTGGTCTGTCATAATGTA+TGG 0.314126 tig0007116:-46346 None:intergenic
GCACATATACTCTTCGAATT+AGG 0.315076 tig0007116:-46243 None:intergenic
TAGGTCAGGAATAGTGGTTT+TGG 0.325123 tig0007116:-46750 Msa1345370:CDS
TCAGGAAACATAGCTGTTAT+TGG 0.331184 tig0007116:+48249 Msa1345360:intron
CATCATACCAATTATAGTTC+TGG 0.333386 tig0007116:+47555 Msa1345360:CDS
TAGTTTGTTGTATTTAATAA+AGG 0.340075 tig0007116:+51676 Msa1345360:three_prime_UTR
TGACCCATCTTCTGATTTCA+AGG 0.345670 tig0007116:-46612 Msa1345370:CDS
AACATCCCAATTGTGATAGA+TGG 0.346293 tig0007116:+48878 Msa1345360:CDS
TCTGAGCTTAGTACCTTTCT+GGG 0.349937 tig0007116:+47045 Msa1345360:five_prime_UTR
CGGCATGAACATTACTTGAT+TGG 0.356842 tig0007116:-49845 None:intergenic
GCAGTGTTGGGATCCATTGC+TGG 0.361523 tig0007116:+51379 Msa1345360:CDS
TTCTGTGCACACCAATTATC+TGG 0.362548 tig0007116:-46418 None:intergenic
CTAGTCATTGGTCCAGGCCT+TGG 0.363699 tig0007116:+48696 Msa1345360:CDS
CATACCCCATCTATCACAAT+TGG 0.364871 tig0007116:-48884 None:intergenic
TTTGTTGTTAGTTTGTCTTA+TGG 0.372047 tig0007116:-46307 None:intergenic
TGCAATTAGGTCAGGAATAG+TGG 0.380299 tig0007116:-46756 Msa1345370:CDS
CTATACGATTCTTCCAAAAC+AGG 0.387268 tig0007116:-48504 None:intergenic
TCTGTTGATATCAGTTTCAA+TGG 0.399526 tig0007116:-46380 None:intergenic
CAAACAAAGACTTGAGTTGA+TGG 0.417241 tig0007116:-51720 None:intergenic
GGTGTTACTATCCTAAGAAA+AGG 0.417575 tig0007116:+49664 Msa1345360:CDS
TGTGAATAGGGGTTGCTGTT+TGG 0.421326 tig0007116:+47395 Msa1345360:intron
AATCACCTTGAACTTGTTAG+TGG 0.422168 tig0007116:+49002 Msa1345360:CDS
TTCACATTCAAATTCATCAT+AGG 0.422511 tig0007116:-46865 None:intergenic
ATCAAGGTTCTTGCTGAAGT+TGG 0.425502 tig0007116:+48648 Msa1345360:CDS
AGAGTAAGCACTTGCTCAGC+AGG 0.425937 tig0007116:-49113 None:intergenic
GACGTGCACGTGTTCCCAAC+TGG 0.429006 tig0007116:-46968 None:intergenic
AACCGATGTCTTCTGAAAAC+AGG 0.444182 tig0007116:-47501 None:intergenic
GCAAGAATTGTGTACCTGTC+TGG 0.447406 tig0007116:-47659 None:intergenic
GACTGTCTAGTCATTGGTCC+AGG 0.449752 tig0007116:+48690 Msa1345360:CDS
GCTGAAATAGCAGCAAAGTA+TGG 0.452837 tig0007116:-48297 None:intergenic
GTGTTGAATTGAAGAGAGTA+TGG 0.457059 tig0007116:-46810 None:intergenic
TCTTCCATCTTTCACTTGAC+CGG 0.460546 tig0007116:+49809 Msa1345360:CDS
TCATTGAATGCTTAGGGAAA+AGG 0.460736 tig0007116:+51473 Msa1345360:CDS
TATGGTGGTTAAGCAGTGAT+TGG 0.463655 tig0007116:-46289 None:intergenic
AAGTTGGCAAATGGTTAGAA+AGG 0.464587 tig0007116:+48664 Msa1345360:CDS
AGGTTTGACTGTCTAGTCAT+TGG 0.469835 tig0007116:+48684 Msa1345360:CDS
GGTACTAAGCTCAGAAATTG+AGG 0.471229 tig0007116:-47037 None:intergenic
GGTGACATCATTGAATGCTT+AGG 0.472445 tig0007116:+51466 Msa1345360:CDS
ATATGAAGATGAATGCAATT+AGG 0.474166 tig0007116:-46769 Msa1345370:CDS
GTGACATCATTGAATGCTTA+GGG 0.475692 tig0007116:+51467 Msa1345360:CDS
CTAGATCGAAGTAGACATAA+AGG 0.479089 tig0007116:+47636 Msa1345360:CDS
TGGAAGAATCGTATAGTGTC+AGG 0.480517 tig0007116:+48511 Msa1345360:CDS
TGCAAAGAATTGTATGCTAC+TGG 0.482117 tig0007116:+47470 Msa1345360:CDS
AATGTGTCTCTTCCAAGGCC+TGG 0.488920 tig0007116:-48708 None:intergenic
GTTAACCTGAGATATGAATC+TGG 0.489466 tig0007116:-51260 None:intergenic
ACATCCCAATTGTGATAGAT+GGG 0.491513 tig0007116:+48879 Msa1345360:CDS
AAGATGAATGCAATTAGGTC+AGG 0.497334 tig0007116:-46764 Msa1345370:CDS
CCTAGACGCTGTGGTGGCCA+AGG 0.497476 tig0007116:+50352 Msa1345360:CDS
TTCTTGCTGAAGTTGGCAAA+TGG 0.497957 tig0007116:+48655 Msa1345360:CDS
CATAGCCACTAACAAGTTCA+AGG 0.498864 tig0007116:-49007 None:intergenic
AGGTCACAAACTGCATGAAC+TGG 0.501937 tig0007116:-51601 None:intergenic
CTGGTCCAGATTCATATCTC+AGG 0.505172 tig0007116:+51255 Msa1345360:CDS
GTTGTTAGTTTGTCTTATGG+TGG 0.514081 tig0007116:-46304 None:intergenic
AAGAAAAGATCAACTGTCAC+TGG 0.520063 tig0007116:+51445 Msa1345360:CDS
GATTCCTTGAAATCAGAAGA+TGG 0.525934 tig0007116:+46608 Msa1345360:five_prime_UTR
GCAATGGATCCCAACACTGC+TGG 0.527491 tig0007116:-51376 None:intergenic
ATTGTGTATGTTGTTGAAGA+AGG 0.533476 tig0007116:-51893 None:intergenic
AAATCACTTGCCTTCCAGAA+AGG 0.533730 tig0007116:-50381 None:intergenic
GTACTAAGCTCAGAAATTGA+GGG 0.535519 tig0007116:-47036 None:intergenic
TGTCTACTTCGATCTAGGAC+AGG 0.537753 tig0007116:-47630 None:intergenic
CGCCAACATATTGAAGCCGC+TGG 0.538329 tig0007116:+51236 Msa1345360:CDS
CCTTGGCCACCACAGCGTCT+AGG 0.541683 tig0007116:-50352 None:intergenic
AAAGACTAATTTCAGGGAGG+AGG 0.546606 tig0007116:+48608 Msa1345360:intron
ATACCCCATCTATCACAATT+GGG 0.552293 tig0007116:-48883 None:intergenic
GTGTTACTATCCTAAGAAAA+GGG 0.553052 tig0007116:+49665 Msa1345360:CDS
TCTTCGAATTAGGCATGTCC+TGG 0.554035 tig0007116:-46233 None:intergenic
GACCAGCGGCTTCAATATGT+TGG 0.558603 tig0007116:-51238 None:intergenic
AGTAGACATAAAGGCCAGAC+AGG 0.560312 tig0007116:+47645 Msa1345360:CDS
GGAGGGTGTCGAGAATATAC+AGG 0.562370 tig0007116:+48270 Msa1345360:CDS
CACAAACTGCATGAACTGGC+AGG 0.564675 tig0007116:-51597 None:intergenic
TGTGCCGGTCAAGTGAAAGA+TGG 0.565646 tig0007116:-49813 None:intergenic
CATCATAGCAGAACCAGCAA+TGG 0.569174 tig0007116:-51392 None:intergenic
TTCCAGAAAGGATATCGCCT+TGG 0.569656 tig0007116:-50369 None:intergenic
CTTATATTCATTGACATTTG+GGG 0.570403 tig0007116:-49045 None:intergenic
AAAATTACTCTAGCCCAGAA+AGG 0.570694 tig0007116:-47058 None:intergenic
ATTCCTTGAAATCAGAAGAT+GGG 0.574749 tig0007116:+46609 Msa1345360:five_prime_UTR
GGAAACATAGCTGTTATTGG+AGG 0.581792 tig0007116:+48252 Msa1345360:intron
CTAATAAGCGATGGTGACAA+AGG 0.586144 tig0007116:+49697 Msa1345360:CDS
GAAGAAATGTGTCTCTTCCA+AGG 0.587504 tig0007116:-48713 None:intergenic
TCAACAGCAGCAGCAAAATG+AGG 0.591319 tig0007116:-46660 Msa1345370:CDS
TTTGGTCTGTCATAATGTAT+GGG 0.594954 tig0007116:-46345 None:intergenic
GATTGGAATCGAAAATGTGC+CGG 0.596537 tig0007116:-49828 None:intergenic
TTTCTTATTTGAGAAAGCAA+GGG 0.602286 tig0007116:-51428 None:intergenic
CTGTTGAGGTTGATGCTGAG+AGG 0.602725 tig0007116:+47589 Msa1345360:CDS
AAATCTGATCTAATAAGCGA+TGG 0.625347 tig0007116:+49688 Msa1345360:CDS
TGTTGAGGTTGATGCTGAGA+GGG 0.627704 tig0007116:+47590 Msa1345360:CDS
TCTATCTCTTTCCCTGAACG+TGG 0.628499 tig0007116:-46587 Msa1345370:CDS
GGTTCTCCTAGACGCTGTGG+TGG 0.634816 tig0007116:+50346 Msa1345360:CDS
TGTTCAAGGCAACGTTTGTG+TGG 0.635749 tig0007116:+51741 Msa1345360:three_prime_UTR
GAAACATAGCTGTTATTGGA+GGG 0.636930 tig0007116:+48253 Msa1345360:CDS
ACAGGGTGCACAATCAACTC+AGG 0.644569 tig0007116:-48486 None:intergenic
TGGTTCTGCTATGATGAGGA+AGG 0.646503 tig0007116:+51399 Msa1345360:CDS
ATTCTTTGCACAATACAACA+AGG 0.649931 tig0007116:-47457 None:intergenic
GAGATATGAATCTGGACCAG+CGG 0.651593 tig0007116:-51252 None:intergenic
AAGTGAAAGATGGAAGAACA+AGG 0.652463 tig0007116:-49803 None:intergenic
CATCCCAATTGTGATAGATG+GGG 0.653855 tig0007116:+48880 Msa1345360:CDS
TTCTTTGCACAATACAACAA+GGG 0.653862 tig0007116:-47456 None:intergenic
AAGGCGATATCCTTTCTGGA+AGG 0.654435 tig0007116:+50371 Msa1345360:CDS
TATGGTTCTCCTAGACGCTG+TGG 0.663571 tig0007116:+50343 Msa1345360:CDS
TTGCTGGTTCTGCTATGATG+AGG 0.663985 tig0007116:+51395 Msa1345360:CDS
GGTCATGTTAATGAAACATG+TGG 0.675238 tig0007116:+47416 Msa1345360:exon
TATACGATTCTTCCAAAACA+GGG 0.700328 tig0007116:-48503 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAAAAAATGAAGATA+TGG - tig0007116:47689-47708 None:intergenic 10.0%
!!! TTCATTTTTTTTTTAATAAC+TGG + tig0007116:47693-47712 Msa1345360:intron 10.0%
!! AAAAAATTGTTTATAATACC+TGG - tig0007116:47090-47109 None:intergenic 15.0%
!!! TGTATTTTGTTATCAAAATT+TGG + tig0007116:47185-47204 Msa1345360:intron 15.0%
!! AAAATTTGGTTATAAGAATT+AGG + tig0007116:47199-47218 Msa1345360:intron 15.0%
!! AAATTTGGTTATAAGAATTA+GGG + tig0007116:47200-47219 Msa1345360:intron 15.0%
!!! TTTTTTATTTTGTGAATTCA+TGG + tig0007116:47258-47277 Msa1345360:intron 15.0%
!!! AATTCTAATATCAATTTTCA+TGG - tig0007116:47338-47357 None:intergenic 15.0%
!! ATGAAAATTGATATTAGAAT+TGG + tig0007116:47337-47356 Msa1345360:intron 15.0%
!! TGAAAATTGATATTAGAATT+GGG + tig0007116:47338-47357 Msa1345360:intron 15.0%
!! GGTGTTAATTATATATTAAA+AGG + tig0007116:47810-47829 Msa1345360:intron 15.0%
!! TCAATCTTATGAAATATAAT+AGG + tig0007116:49315-49334 Msa1345360:intron 15.0%
!!! AAAATCAGAAGAAATTTTAA+AGG + tig0007116:50626-50645 Msa1345360:intron 15.0%
!! GAACAAAAATATAATTATCA+AGG - tig0007116:51343-51362 None:intergenic 15.0%
!!! AATACAACAAACTATTTTTT+AGG - tig0007116:51670-51689 None:intergenic 15.0%
!!! TAGTTTGTTGTATTTAATAA+AGG + tig0007116:51676-51695 Msa1345360:three_prime_UTR 15.0%
!!! GAATAAATGTTTTTTTTTAC+AGG + tig0007116:51852-51871 Msa1345360:three_prime_UTR 15.0%
!!! TAGAGTAATTTTTATTTTCC+AGG + tig0007116:47069-47088 Msa1345360:five_prime_UTR 20.0%
!! AAACACAACATTTGAATAAA+GGG - tig0007116:47129-47148 None:intergenic 20.0%
!! AATTTGGTTATAAGAATTAG+GGG + tig0007116:47201-47220 Msa1345360:intron 20.0%
!! GAAAATTGATATTAGAATTG+GGG + tig0007116:47339-47358 Msa1345360:intron 20.0%
!! AAAATTGATATTAGAATTGG+GGG + tig0007116:47340-47359 Msa1345360:intron 20.0%
!!! TTTTTAAGGTATTCATGTTT+GGG + tig0007116:47370-47389 Msa1345360:intron 20.0%
!! GAAATGTTTAGAAAACAAAA+AGG - tig0007116:48103-48122 None:intergenic 20.0%
!! TTTCAATTATGTTTCAAATC+AGG + tig0007116:48231-48250 Msa1345360:intron 20.0%
!!! ACAAGTACTAACAATTTTTA+AGG - tig0007116:48322-48341 None:intergenic 20.0%
!! TTTAATGAAAGACTAATTTC+AGG + tig0007116:48601-48620 Msa1345360:intron 20.0%
!! TTAATGAAAGACTAATTTCA+GGG + tig0007116:48602-48621 Msa1345360:intron 20.0%
!! TTTATTATACACTTGGAAAT+AGG + tig0007116:48784-48803 Msa1345360:intron 20.0%
!!! TTTTATGATTTACACAAGTT+AGG - tig0007116:49243-49262 None:intergenic 20.0%
!! TATGAAATATAATAGGCTAA+TGG + tig0007116:49322-49341 Msa1345360:intron 20.0%
!!! TTCAATTTTATGTTCAAGTT+TGG + tig0007116:49439-49458 Msa1345360:intron 20.0%
!!! GTTCTTTTTCTCAATATAAA+TGG - tig0007116:49964-49983 None:intergenic 20.0%
!! TACACAAACTTAAAATTACT+TGG + tig0007116:50081-50100 Msa1345360:intron 20.0%
!!! TTGGTTGATGTTTAAATAAA+TGG + tig0007116:50100-50119 Msa1345360:intron 20.0%
!!! TGGTTGATGTTTAAATAAAT+GGG + tig0007116:50101-50120 Msa1345360:intron 20.0%
!! ATAAAGTAAGAAACTAACAA+GGG - tig0007116:50567-50586 None:intergenic 20.0%
!!! TGTTACTTTAAAACAACTAT+TGG - tig0007116:50780-50799 None:intergenic 20.0%
!!! TTTAAGGTCATTAAATTTAG+TGG + tig0007116:50946-50965 Msa1345360:intron 20.0%
!! CAACTAATGTATTTCATTTA+AGG + tig0007116:50980-50999 Msa1345360:intron 20.0%
!! GTCAAAAATTGTTTCATTTA+AGG - tig0007116:51037-51056 None:intergenic 20.0%
!!! TAACGTTTTCTATTTTTCTT+AGG + tig0007116:51279-51298 Msa1345360:intron 20.0%
!!! ATTTTATTGTCTTCCTAAAT+TGG - tig0007116:51812-51831 None:intergenic 20.0%
!!! TTTGTTGTTAGTTTGTCTTA+TGG - tig0007116:46310-46329 None:intergenic 25.0%
!!! ATTTTTTATTAACCACGTTC+AGG + tig0007116:46575-46594 Msa1345360:five_prime_UTR 25.0%
!!! TTTTTTATTAACCACGTTCA+GGG + tig0007116:46576-46595 Msa1345360:five_prime_UTR 25.0%
!! AATTGGTTTCAAACCTTATT+TGG - tig0007116:46699-46718 Msa1345370:CDS 25.0%
! ATATGAAGATGAATGCAATT+AGG - tig0007116:46772-46791 Msa1345370:CDS 25.0%
! TTCATCTTCATATCTGATTT+CGG + tig0007116:46779-46798 Msa1345360:five_prime_UTR 25.0%
! TTCACATTCAAATTCATCAT+AGG - tig0007116:46868-46887 None:intergenic 25.0%
!!! TTGAGTTGAATTTTGATACT+AGG + tig0007116:46888-46907 Msa1345360:five_prime_UTR 25.0%
!!! TGAGTTGAATTTTGATACTA+GGG + tig0007116:46889-46908 Msa1345360:five_prime_UTR 25.0%
! CAAACACAACATTTGAATAA+AGG - tig0007116:47130-47149 None:intergenic 25.0%
! ATAAAGACTCAAATCTTTAG+AGG - tig0007116:47303-47322 None:intergenic 25.0%
! AAATTGATATTAGAATTGGG+GGG + tig0007116:47341-47360 Msa1345360:intron 25.0%
!!! GTTTTTAAGGTATTCATGTT+TGG + tig0007116:47369-47388 Msa1345360:intron 25.0%
!! CATTTTTCCAGAACTATAAT+TGG - tig0007116:47565-47584 None:intergenic 25.0%
! AGATTTGCCTCTTAAAAAAA+TGG - tig0007116:47760-47779 None:intergenic 25.0%
! AAATACATATAAGCTATGCT+AGG - tig0007116:48162-48181 None:intergenic 25.0%
!! ATCTTTTGTACAGAATACAT+GGG - tig0007116:48439-48458 None:intergenic 25.0%
! CATTAAAAACAACATTCACT+AGG - tig0007116:48588-48607 None:intergenic 25.0%
! CAAGAAAAACATATCAATCA+AGG + tig0007116:48632-48651 Msa1345360:CDS 25.0%
! CTTATATTCATTGACATTTG+GGG - tig0007116:49048-49067 None:intergenic 25.0%
! GCTTATATTCATTGACATTT+GGG - tig0007116:49049-49068 None:intergenic 25.0%
! CAAATAGAACAACTAAAATG+AGG - tig0007116:49155-49174 None:intergenic 25.0%
! GTTTAAATCACTATCCATAT+AGG - tig0007116:49275-49294 None:intergenic 25.0%
!! AGTCAATTGACAATTTTCAA+GGG + tig0007116:49385-49404 Msa1345360:intron 25.0%
! AGCATGATAAATTGTTTGAT+TGG + tig0007116:49549-49568 Msa1345360:intron 25.0%
! CTTCGATAAATATAAAATCC+CGG + tig0007116:49725-49744 Msa1345360:intron 25.0%
! CTTGTATATAACATGTCATA+CGG - tig0007116:49896-49915 None:intergenic 25.0%
!! AACAAGATTTTGTGTAAAAG+AGG - tig0007116:50054-50073 None:intergenic 25.0%
!!! TAGAGACTGTTTTAAACATT+TGG + tig0007116:50222-50241 Msa1345360:intron 25.0%
! GATAAAGTAAGAAACTAACA+AGG - tig0007116:50568-50587 None:intergenic 25.0%
!! CTCTTTCTATTTTCTTTTCA+GGG - tig0007116:50658-50677 None:intergenic 25.0%
!! TCTCTTTCTATTTTCTTTTC+AGG - tig0007116:50659-50678 None:intergenic 25.0%
! CCTTAAATGAACAGTATTAT+AGG - tig0007116:50933-50952 None:intergenic 25.0%
! CCTATAATACTGTTCATTTA+AGG + tig0007116:50930-50949 Msa1345360:intron 25.0%
! ACAGGGAGATAAATAAAAAT+TGG - tig0007116:51059-51078 None:intergenic 25.0%
!! TTTCTTATTTGAGAAAGCAA+GGG - tig0007116:51431-51450 None:intergenic 25.0%
!!! TTTTCTTATTTGAGAAAGCA+AGG - tig0007116:51432-51451 None:intergenic 25.0%
!! ACACATTTTATACAAGTGTT+TGG - tig0007116:51627-51646 None:intergenic 25.0%
!!! TGTCGTGAATTTTTTAATGA+TGG + tig0007116:51786-51805 Msa1345360:three_prime_UTR 25.0%
!! TTTTTAATGATGGCCAATTT+AGG + tig0007116:51796-51815 Msa1345360:three_prime_UTR 25.0%
TTTGGTCTGTCATAATGTAT+GGG - tig0007116:46348-46367 None:intergenic 30.0%
!!! CAATGGTTTGATTTTAGCTT+TGG - tig0007116:46366-46385 None:intergenic 30.0%
TCTGTTGATATCAGTTTCAA+TGG - tig0007116:46383-46402 None:intergenic 30.0%
! TTTCTCTTTGCTTCTGTTTT+GGG - tig0007116:46547-46566 None:intergenic 30.0%
! TTTTCTCTTTGCTTCTGTTT+TGG - tig0007116:46548-46567 None:intergenic 30.0%
ATTCCTTGAAATCAGAAGAT+GGG + tig0007116:46609-46628 Msa1345360:five_prime_UTR 30.0%
!! GGTTATTTGAGTTTTCGAAT+TGG - tig0007116:46716-46735 Msa1345370:CDS 30.0%
! TCATGTTTGGGTTTATGAAT+AGG + tig0007116:47230-47249 Msa1345360:intron 30.0%
TTCTTTGCACAATACAACAA+GGG - tig0007116:47459-47478 None:intergenic 30.0%
ATTCTTTGCACAATACAACA+AGG - tig0007116:47460-47479 None:intergenic 30.0%
CATCATACCAATTATAGTTC+TGG + tig0007116:47555-47574 Msa1345360:CDS 30.0%
!!! TGTGCTACCATTTTTTTAAG+AGG + tig0007116:47750-47769 Msa1345360:intron 30.0%
! TCAAACACTGACTACTAATA+GGG - tig0007116:47968-47987 None:intergenic 30.0%
! TTCAAACACTGACTACTAAT+AGG - tig0007116:47969-47988 None:intergenic 30.0%
GTTTAGAAAACAAAAAGGCA+AGG - tig0007116:48098-48117 None:intergenic 30.0%
AGGCATATTTGCAATAATCA+GGG - tig0007116:48142-48161 None:intergenic 30.0%
TAGGCATATTTGCAATAATC+AGG - tig0007116:48143-48162 None:intergenic 30.0%
! CATCTTTTGTACAGAATACA+TGG - tig0007116:48440-48459 None:intergenic 30.0%
TATACGATTCTTCCAAAACA+GGG - tig0007116:48506-48525 None:intergenic 30.0%
TCCAAGTGTATAATAAAGCT+GGG - tig0007116:48781-48800 None:intergenic 30.0%
TTCCAAGTGTATAATAAAGC+TGG - tig0007116:48782-48801 None:intergenic 30.0%
!! AACATTTTGACAATGTTACC+AGG + tig0007116:48817-48836 Msa1345360:intron 30.0%
AAGTGTATTGCTTACTGTTT+CGG + tig0007116:48948-48967 Msa1345360:intron 30.0%
CGCTTATATTCATTGACATT+TGG - tig0007116:49050-49069 None:intergenic 30.0%
AAAATGAGGAACTTACTGTT+TGG - tig0007116:49141-49160 None:intergenic 30.0%
! TAAAAAGCATGCTACCTATA+TGG + tig0007116:49258-49277 Msa1345360:intron 30.0%
TTTCATAAGATTGAATGCAG+TGG - tig0007116:49309-49328 None:intergenic 30.0%
CTTGAAAATTGTCAATTGAC+TGG - tig0007116:49386-49405 None:intergenic 30.0%
! CAGTCAATTGACAATTTTCA+AGG + tig0007116:49384-49403 Msa1345360:intron 30.0%
!! AAGTTTTGTACTTAGTACCA+GGG - tig0007116:49608-49627 None:intergenic 30.0%
!! AAAGTTTTGTACTTAGTACC+AGG - tig0007116:49609-49628 None:intergenic 30.0%
CAAAACTTTAATGACAGTTG+TGG + tig0007116:49620-49639 Msa1345360:intron 30.0%
! GTGTTACTATCCTAAGAAAA+GGG + tig0007116:49665-49684 Msa1345360:CDS 30.0%
AAATCTGATCTAATAAGCGA+TGG + tig0007116:49688-49707 Msa1345360:CDS 30.0%
AAATAAGAAACCAGACAAGA+AGG - tig0007116:49755-49774 None:intergenic 30.0%
!! TCTTGTCTGGTTTCTTATTT+TGG + tig0007116:49755-49774 Msa1345360:intron 30.0%
!!! CTTGTCTGGTTTCTTATTTT+GGG + tig0007116:49756-49775 Msa1345360:intron 30.0%
! TTTTAGCAGAACTGTTCATT+TGG - tig0007116:50002-50021 None:intergenic 30.0%
!! ACTGTTTTAAACATTTGGCA+TGG + tig0007116:50227-50246 Msa1345360:intron 30.0%
!! CTGTTTTAAACATTTGGCAT+GGG + tig0007116:50228-50247 Msa1345360:intron 30.0%
!! TGTTTTAAACATTTGGCATG+GGG + tig0007116:50229-50248 Msa1345360:intron 30.0%
AAATGGTTTCGAAACATCTT+TGG - tig0007116:50282-50301 None:intergenic 30.0%
TGTTTCGAAACCATTTGATT+TGG + tig0007116:50286-50305 Msa1345360:intron 30.0%
! GTTTCGAAACCATTTGATTT+GGG + tig0007116:50287-50306 Msa1345360:intron 30.0%
AATAACAGACCCAAATCAAA+TGG - tig0007116:50299-50318 None:intergenic 30.0%
TTGCTCTTCTTTATGTCATA+TGG + tig0007116:50466-50485 Msa1345360:intron 30.0%
!!! CATTTTTTGATAGCGAATTG+TGG + tig0007116:50854-50873 Msa1345360:intron 30.0%
ATCTATTCTTTCTTGCAGTT+TGG + tig0007116:51563-51582 Msa1345360:intron 30.0%
! CATTTTATACAAGTGTTTGG+AGG - tig0007116:51624-51643 None:intergenic 30.0%
TATAAAATGTGTCGAGTTAC+TGG + tig0007116:51635-51654 Msa1345360:three_prime_UTR 30.0%
GCACATATACTCTTCGAATT+AGG - tig0007116:46246-46265 None:intergenic 35.0%
!! GTTGTTAGTTTGTCTTATGG+TGG - tig0007116:46307-46326 None:intergenic 35.0%
CTTTGGTCTGTCATAATGTA+TGG - tig0007116:46349-46368 None:intergenic 35.0%
CAAGCAAATCACCAGATAAT+TGG + tig0007116:46407-46426 Msa1345360:five_prime_UTR 35.0%
GATTCCTTGAAATCAGAAGA+TGG + tig0007116:46608-46627 Msa1345360:five_prime_UTR 35.0%
ACTTGAGCTTTCTCCAAATA+AGG + tig0007116:46683-46702 Msa1345360:five_prime_UTR 35.0%
AAGATGAATGCAATTAGGTC+AGG - tig0007116:46767-46786 Msa1345370:CDS 35.0%
GTGTTGAATTGAAGAGAGTA+TGG - tig0007116:46813-46832 None:intergenic 35.0%
!!! GTTTTGAGAATCTTCCAGTT+GGG + tig0007116:46954-46973 Msa1345360:five_prime_UTR 35.0%
GTACTAAGCTCAGAAATTGA+GGG - tig0007116:47039-47058 None:intergenic 35.0%
AAAATTACTCTAGCCCAGAA+AGG - tig0007116:47061-47080 None:intergenic 35.0%
TTGTGAATTCATGGTTGTGT+TGG + tig0007116:47267-47286 Msa1345360:intron 35.0%
! TCATGTTTGGGTTTGTGAAT+AGG + tig0007116:47382-47401 Msa1345360:intron 35.0%
! CATGTTTGGGTTTGTGAATA+GGG + tig0007116:47383-47402 Msa1345360:intron 35.0%
! ATGTTTGGGTTTGTGAATAG+GGG + tig0007116:47384-47403 Msa1345360:intron 35.0%
GGTCATGTTAATGAAACATG+TGG + tig0007116:47416-47435 Msa1345360:exon 35.0%
TGCAAAGAATTGTATGCTAC+TGG + tig0007116:47470-47489 Msa1345360:CDS 35.0%
! CGGTTTTTGATAAGATCTCT+TGG + tig0007116:47519-47538 Msa1345360:CDS 35.0%
CTTTATGTCTACTTCGATCT+AGG - tig0007116:47638-47657 None:intergenic 35.0%
CTAGATCGAAGTAGACATAA+AGG + tig0007116:47636-47655 Msa1345360:CDS 35.0%
CTATGATATGTTAGTAGCGA+CGG + tig0007116:47789-47808 Msa1345360:intron 35.0%
TCTTAATCATCGTTGCATTG+CGG - tig0007116:47885-47904 None:intergenic 35.0%
CATTGCAATCGTTGATATTG+CGG - tig0007116:47928-47947 None:intergenic 35.0%
TACTAATAGGGTAACAGTTG+CGG - tig0007116:47956-47975 None:intergenic 35.0%
TATGTTAGCACATGTCTCTA+AGG - tig0007116:48037-48056 None:intergenic 35.0%
TCAGGAAACATAGCTGTTAT+TGG + tig0007116:48249-48268 Msa1345360:intron 35.0%
GAAACATAGCTGTTATTGGA+GGG + tig0007116:48253-48272 Msa1345360:CDS 35.0%
!! AACTATTTTTCCATCCATGC+AGG + tig0007116:48401-48420 Msa1345360:intron 35.0%
!! ACTATTTTTCCATCCATGCA+GGG + tig0007116:48402-48421 Msa1345360:intron 35.0%
CTATACGATTCTTCCAAAAC+AGG - tig0007116:48507-48526 None:intergenic 35.0%
ATGAAAGACTAATTTCAGGG+AGG + tig0007116:48605-48624 Msa1345360:intron 35.0%
AAGTTGGCAAATGGTTAGAA+AGG + tig0007116:48664-48683 Msa1345360:CDS 35.0%
!! TCCCAGCTTTATTATACACT+TGG + tig0007116:48777-48796 Msa1345360:intron 35.0%
AACATCCCAATTGTGATAGA+TGG + tig0007116:48878-48897 Msa1345360:CDS 35.0%
ACATCCCAATTGTGATAGAT+GGG + tig0007116:48879-48898 Msa1345360:CDS 35.0%
ATACCCCATCTATCACAATT+GGG - tig0007116:48886-48905 None:intergenic 35.0%
TTACTGTTTCGGCATATTTC+AGG + tig0007116:48959-48978 Msa1345360:intron 35.0%
!! AATCACCTTGAACTTGTTAG+TGG + tig0007116:49002-49021 Msa1345360:CDS 35.0%
!!! TGGATTGCTTTTTGCAGAAT+TGG + tig0007116:49640-49659 Msa1345360:intron 35.0%
!!! ATTGCTTTTTGCAGAATTGG+TGG + tig0007116:49643-49662 Msa1345360:intron 35.0%
!! GGTGTTACTATCCTAAGAAA+AGG + tig0007116:49664-49683 Msa1345360:CDS 35.0%
! GATCAGATTTCCCTTTTCTT+AGG - tig0007116:49678-49697 None:intergenic 35.0%
AAGTGAAAGATGGAAGAACA+AGG - tig0007116:49806-49825 None:intergenic 35.0%
TGAGATTTGTCTATGGGATA+GGG + tig0007116:50141-50160 Msa1345360:intron 35.0%
GTCAAAACAGTTAGCATCTA+TGG + tig0007116:50325-50344 Msa1345360:intron 35.0%
GTATTTGTGAAATTCCTTCC+AGG + tig0007116:50417-50436 Msa1345360:intron 35.0%
TACTGCATCATAAAGTTTCC+TGG - tig0007116:50438-50457 None:intergenic 35.0%
AGTAAGAAACTAACAAGGGA+AGG - tig0007116:50563-50582 None:intergenic 35.0%
AAGTGCATTCAAGAAACAGT+TGG + tig0007116:50591-50610 Msa1345360:intron 35.0%
TCATACAATCACTGTCTTTG+TGG + tig0007116:50746-50765 Msa1345360:intron 35.0%
! AGTTTTCACTTATTCCATCC+TGG + tig0007116:50892-50911 Msa1345360:intron 35.0%
GAGCTCAAGTACTAAATGAA+CGG - tig0007116:51011-51030 None:intergenic 35.0%
!! ATACAGTGTTGCTGTCTTTT+TGG + tig0007116:51205-51224 Msa1345360:intron 35.0%
GTTAACCTGAGATATGAATC+TGG - tig0007116:51263-51282 None:intergenic 35.0%
! TTCTAAAAATCCAGCAGTGT+TGG + tig0007116:51366-51385 Msa1345360:CDS 35.0%
TCTAAAAATCCAGCAGTGTT+GGG + tig0007116:51367-51386 Msa1345360:CDS 35.0%
AAGAAAAGATCAACTGTCAC+TGG + tig0007116:51445-51464 Msa1345360:CDS 35.0%
GTGACATCATTGAATGCTTA+GGG + tig0007116:51467-51486 Msa1345360:CDS 35.0%
TCATTGAATGCTTAGGGAAA+AGG + tig0007116:51473-51492 Msa1345360:CDS 35.0%
!! CAAACAAAGACTTGAGTTGA+TGG - tig0007116:51723-51742 None:intergenic 35.0%
! CTCAAGTCTTTGTTTGTTCA+AGG + tig0007116:51727-51746 Msa1345360:three_prime_UTR 35.0%
TATGGTGGTTAAGCAGTGAT+TGG - tig0007116:46292-46311 None:intergenic 40.0%
TTCTGTGCACACCAATTATC+TGG - tig0007116:46421-46440 None:intergenic 40.0%
TGACCCATCTTCTGATTTCA+AGG - tig0007116:46615-46634 Msa1345370:CDS 40.0%
!!! GTTTTGGGAGCATTAGCTTT+TGG - tig0007116:46737-46756 Msa1345370:CDS 40.0%
! AGGTCAGGAATAGTGGTTTT+GGG - tig0007116:46752-46771 Msa1345370:CDS 40.0%
! TAGGTCAGGAATAGTGGTTT+TGG - tig0007116:46753-46772 Msa1345370:CDS 40.0%
TGCAATTAGGTCAGGAATAG+TGG - tig0007116:46759-46778 Msa1345370:CDS 40.0%
!!! CGTTTTGAGAATCTTCCAGT+TGG + tig0007116:46953-46972 Msa1345360:five_prime_UTR 40.0%
GGTACTAAGCTCAGAAATTG+AGG - tig0007116:47040-47059 None:intergenic 40.0%
TTCTGAGCTTAGTACCTTTC+TGG + tig0007116:47044-47063 Msa1345360:five_prime_UTR 40.0%
TCTGAGCTTAGTACCTTTCT+GGG + tig0007116:47045-47064 Msa1345360:five_prime_UTR 40.0%
TTAGGGGATGCATTCATGTT+TGG + tig0007116:47217-47236 Msa1345360:intron 40.0%
TAGGGGATGCATTCATGTTT+GGG + tig0007116:47218-47237 Msa1345360:intron 40.0%
!! TTGGGGGGTTTGTGTTTTTA+AGG + tig0007116:47356-47375 Msa1345360:intron 40.0%
! AACCGATGTCTTCTGAAAAC+AGG - tig0007116:47504-47523 None:intergenic 40.0%
TGGAAAAATGCAGTCTGTTG+AGG + tig0007116:47575-47594 Msa1345360:CDS 40.0%
AGTAGTCAGTGTTTGAACTC+TGG + tig0007116:47972-47991 Msa1345360:intron 40.0%
!! TCTCTAAGGTGTGACTCAAT+TGG - tig0007116:48023-48042 None:intergenic 40.0%
TCAGGGAACTTCTTATCACA+TGG - tig0007116:48125-48144 None:intergenic 40.0%
GGAAACATAGCTGTTATTGG+AGG + tig0007116:48252-48271 Msa1345360:intron 40.0%
GCTGAAATAGCAGCAAAGTA+TGG - tig0007116:48300-48319 None:intergenic 40.0%
TGGAAGAATCGTATAGTGTC+AGG + tig0007116:48511-48530 Msa1345360:CDS 40.0%
AAAGACTAATTTCAGGGAGG+AGG + tig0007116:48608-48627 Msa1345360:intron 40.0%
ATCAAGGTTCTTGCTGAAGT+TGG + tig0007116:48648-48667 Msa1345360:CDS 40.0%
TTCTTGCTGAAGTTGGCAAA+TGG + tig0007116:48655-48674 Msa1345360:CDS 40.0%
AGGTTTGACTGTCTAGTCAT+TGG + tig0007116:48684-48703 Msa1345360:CDS 40.0%
GAAGAAATGTGTCTCTTCCA+AGG - tig0007116:48716-48735 None:intergenic 40.0%
CATCCCAATTGTGATAGATG+GGG + tig0007116:48880-48899 Msa1345360:CDS 40.0%
CATACCCCATCTATCACAAT+TGG - tig0007116:48887-48906 None:intergenic 40.0%
TAGATGGGGTATGTATGTCA+AGG + tig0007116:48894-48913 Msa1345360:intron 40.0%
TGTTTCGGCATATTTCAGGA+TGG + tig0007116:48963-48982 Msa1345360:intron 40.0%
CATAGCCACTAACAAGTTCA+AGG - tig0007116:49010-49029 None:intergenic 40.0%
TTACACAAGTTAGGATGCTG+AGG - tig0007116:49234-49253 None:intergenic 40.0%
!! ACAATTTTCAAGGGCTAAGC+TGG + tig0007116:49394-49413 Msa1345360:intron 40.0%
AGTGATTTCTCATTACTCCC+TGG + tig0007116:49588-49607 Msa1345360:intron 40.0%
CTAATAAGCGATGGTGACAA+AGG + tig0007116:49697-49716 Msa1345360:CDS 40.0%
AACCAGACAAGAAGGAAAAC+CGG - tig0007116:49747-49766 None:intergenic 40.0%
!!! TCTGGTTTCTTATTTTGGGC+AGG + tig0007116:49760-49779 Msa1345360:intron 40.0%
!!! GTTTCTTATTTTGGGCAGGT+GGG + tig0007116:49764-49783 Msa1345360:intron 40.0%
TCTTCCATCTTTCACTTGAC+CGG + tig0007116:49809-49828 Msa1345360:CDS 40.0%
GATTGGAATCGAAAATGTGC+CGG - tig0007116:49831-49850 None:intergenic 40.0%
CGGCATGAACATTACTTGAT+TGG - tig0007116:49848-49867 None:intergenic 40.0%
GACAACTTTAGTATGGCATG+CGG - tig0007116:49868-49887 None:intergenic 40.0%
TGCCATACTAAAGTTGTCAG+TGG + tig0007116:49870-49889 Msa1345360:intron 40.0%
ATCTCAGAGAGGACAATTGT+AGG - tig0007116:50127-50146 None:intergenic 40.0%
!! TCCTCTCTGAGATTTGTCTA+TGG + tig0007116:50134-50153 Msa1345360:intron 40.0%
!! CCTCTCTGAGATTTGTCTAT+GGG + tig0007116:50135-50154 Msa1345360:intron 40.0%
CTGAGATTTGTCTATGGGAT+AGG + tig0007116:50140-50159 Msa1345360:intron 40.0%
GAGATTTGTCTATGGGATAG+GGG + tig0007116:50142-50161 Msa1345360:intron 40.0%
AAATCACTTGCCTTCCAGAA+AGG - tig0007116:50384-50403 None:intergenic 40.0%
GCATCATAAAGTTTCCTGGA+AGG - tig0007116:50434-50453 None:intergenic 40.0%
GCTATCAAAAAATGCCCACA+AGG - tig0007116:50848-50867 None:intergenic 40.0%
TGGTAATCAAGAGTTCGACA+GGG - tig0007116:51076-51095 None:intergenic 40.0%
! TTGGTAATCAAGAGTTCGAC+AGG - tig0007116:51077-51096 None:intergenic 40.0%
CTCTCAAGAGAAAAGAGCTT+TGG - tig0007116:51096-51115 None:intergenic 40.0%
!!! CACTGCTGGATTTTTAGAAC+TGG - tig0007116:51365-51384 None:intergenic 40.0%
GGTGACATCATTGAATGCTT+AGG + tig0007116:51466-51485 Msa1345360:CDS 40.0%
! TTTTTACAGGATCGCGTTCA+TGG + tig0007116:51865-51884 Msa1345360:three_prime_UTR 40.0%
TCTTCGAATTAGGCATGTCC+TGG - tig0007116:46236-46255 None:intergenic 45.0%
TCTATCTCTTTCCCTGAACG+TGG - tig0007116:46590-46609 Msa1345370:CDS 45.0%
TCAACAGCAGCAGCAAAATG+AGG - tig0007116:46663-46682 Msa1345370:CDS 45.0%
! TGTGAATAGGGGTTGCTGTT+TGG + tig0007116:47395-47414 Msa1345360:intron 45.0%
! CGCCTGTTTTCAGAAGACAT+CGG + tig0007116:47499-47518 Msa1345360:CDS 45.0%
!! TGTTGAGGTTGATGCTGAGA+GGG + tig0007116:47590-47609 Msa1345360:CDS 45.0%
! TGTCTACTTCGATCTAGGAC+AGG - tig0007116:47633-47652 None:intergenic 45.0%
AGTAGACATAAAGGCCAGAC+AGG + tig0007116:47645-47664 Msa1345360:CDS 45.0%
GCAAGAATTGTGTACCTGTC+TGG - tig0007116:47662-47681 None:intergenic 45.0%
!! GGACTGTAGCTTTTGATGAC+AGG - tig0007116:48468-48487 None:intergenic 45.0%
! GTTGATTGTGCACCCTGTTT+TGG + tig0007116:48491-48510 Msa1345360:CDS 45.0%
GGGGTATGTATGTCAAGGTT+TGG + tig0007116:48899-48918 Msa1345360:intron 45.0%
TAGGATGCTGAGGAAACATG+TGG - tig0007116:49224-49243 None:intergenic 45.0%
GAATGCAGTGGAAGAGAAAC+TGG - tig0007116:49297-49316 None:intergenic 45.0%
GGACCATGAAAGTCTGTAAG+TGG + tig0007116:49460-49479 Msa1345360:intron 45.0%
! CTGCCACTTACAGACTTTCA+TGG - tig0007116:49466-49485 None:intergenic 45.0%
ACCAGACAAGAAGGAAAACC+GGG - tig0007116:49746-49765 None:intergenic 45.0%
!!! GGTTTCTTATTTTGGGCAGG+TGG + tig0007116:49763-49782 Msa1345360:intron 45.0%
GGCCACTGACAACTTTAGTA+TGG - tig0007116:49875-49894 None:intergenic 45.0%
CCCATAGACAAATCTCAGAG+AGG - tig0007116:50138-50157 None:intergenic 45.0%
! GGGATAGGGGCTTTATGTTA+TGG + tig0007116:50155-50174 Msa1345360:intron 45.0%
ACATTTGGCATGGGGCTTAT+AGG + tig0007116:50237-50256 Msa1345360:intron 45.0%
CATTTGGCATGGGGCTTATA+GGG + tig0007116:50238-50257 Msa1345360:intron 45.0%
TTCCAGAAAGGATATCGCCT+TGG - tig0007116:50372-50391 None:intergenic 45.0%
AAGGCGATATCCTTTCTGGA+AGG + tig0007116:50371-50390 Msa1345360:CDS 45.0%
!! CAGTAGACTCGGTGAATTAG+CGG - tig0007116:50824-50843 None:intergenic 45.0%
CCTATTTCGAATAGCCAGGA+TGG - tig0007116:50909-50928 None:intergenic 45.0%
CCATCCTGGCTATTCGAAAT+AGG + tig0007116:50906-50925 Msa1345360:intron 45.0%
AGGTCCTATTTCGAATAGCC+AGG - tig0007116:50913-50932 None:intergenic 45.0%
GAGATATGAATCTGGACCAG+CGG - tig0007116:51255-51274 None:intergenic 45.0%
CTGGTCCAGATTCATATCTC+AGG + tig0007116:51255-51274 Msa1345360:CDS 45.0%
CATCATAGCAGAACCAGCAA+TGG - tig0007116:51395-51414 None:intergenic 45.0%
!! TTGCTGGTTCTGCTATGATG+AGG + tig0007116:51395-51414 Msa1345360:CDS 45.0%
! TGGTTCTGCTATGATGAGGA+AGG + tig0007116:51399-51418 Msa1345360:CDS 45.0%
AGGTCACAAACTGCATGAAC+TGG - tig0007116:51604-51623 None:intergenic 45.0%
TGTTCAAGGCAACGTTTGTG+TGG + tig0007116:51741-51760 Msa1345360:three_prime_UTR 45.0%
!! CTGTTGAGGTTGATGCTGAG+AGG + tig0007116:47589-47608 Msa1345360:CDS 50.0%
AAGGTTCTGCACCTGCGAAT+TGG + tig0007116:47829-47848 Msa1345360:intron 50.0%
AGGTTCTGCACCTGCGAATT+GGG + tig0007116:47830-47849 Msa1345360:intron 50.0%
TTGAACTCTGGACCTCCTTC+TGG + tig0007116:47984-48003 Msa1345360:intron 50.0%
TGAACTGAGACACCAGAAGG+AGG - tig0007116:47999-48018 None:intergenic 50.0%
GGTTGAACTGAGACACCAGA+AGG - tig0007116:48002-48021 None:intergenic 50.0%
!! GGAGGGTGTCGAGAATATAC+AGG + tig0007116:48270-48289 Msa1345360:CDS 50.0%
AAATCTGCACCCTGCATGGA+TGG - tig0007116:48414-48433 None:intergenic 50.0%
ACAGGGTGCACAATCAACTC+AGG - tig0007116:48489-48508 None:intergenic 50.0%
GACTGTCTAGTCATTGGTCC+AGG + tig0007116:48690-48709 Msa1345360:CDS 50.0%
AATGTGTCTCTTCCAAGGCC+TGG - tig0007116:48711-48730 None:intergenic 50.0%
TGATGTCACTCACACAGTCC+TGG - tig0007116:48838-48857 None:intergenic 50.0%
AGAGTAAGCACTTGCTCAGC+AGG - tig0007116:49116-49135 None:intergenic 50.0%
! TCCCGGTTTTCCTTCTTGTC+TGG + tig0007116:49742-49761 Msa1345360:intron 50.0%
! TGTGCCGGTCAAGTGAAAGA+TGG - tig0007116:49816-49835 None:intergenic 50.0%
TATGGTTCTCCTAGACGCTG+TGG + tig0007116:50343-50362 Msa1345360:CDS 50.0%
ACCGAGTCTACTGACCTTGT+GGG + tig0007116:50831-50850 Msa1345360:intron 50.0%
GACCAGCGGCTTCAATATGT+TGG - tig0007116:51241-51260 None:intergenic 50.0%
CACAAACTGCATGAACTGGC+AGG - tig0007116:51600-51619 None:intergenic 50.0%
! TTTTCCGCAGCCCAATTCGC+AGG - tig0007116:47843-47862 None:intergenic 55.0%
GGACAAATCTGCACCCTGCA+TGG - tig0007116:48418-48437 None:intergenic 55.0%
CTAGTCATTGGTCCAGGCCT+TGG + tig0007116:48696-48715 Msa1345360:CDS 55.0%
GGCCAAGGCGATATCCTTTC+TGG + tig0007116:50367-50386 Msa1345360:CDS 55.0%
CACCGAGTCTACTGACCTTG+TGG + tig0007116:50830-50849 Msa1345360:intron 55.0%
GCCCACAAGGTCAGTAGACT+CGG - tig0007116:50835-50854 None:intergenic 55.0%
CGCCAACATATTGAAGCCGC+TGG + tig0007116:51236-51255 Msa1345360:CDS 55.0%
GCAATGGATCCCAACACTGC+TGG - tig0007116:51379-51398 None:intergenic 55.0%
! GCAGTGTTGGGATCCATTGC+TGG + tig0007116:51379-51398 Msa1345360:CDS 55.0%
GACGTGCACGTGTTCCCAAC+TGG - tig0007116:46971-46990 None:intergenic 60.0%
TGCACCTGCGAATTGGGCTG+CGG + tig0007116:47836-47855 Msa1345360:intron 60.0%
GGTTCTCCTAGACGCTGTGG+TGG + tig0007116:50346-50365 Msa1345360:CDS 60.0%
CCTTGGCCACCACAGCGTCT+AGG - tig0007116:50355-50374 None:intergenic 65.0%
CCTAGACGCTGTGGTGGCCA+AGG + tig0007116:50352-50371 Msa1345360:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0007116 gene 46233 51903 46233 ID=Msa1345360;Name=Msa1345360
tig0007116 mRNA 46233 51903 46233 ID=Msa1345360-mRNA-1;Parent=Msa1345360;Name=Msa1345360-mRNA-1;_AED=0.10;_eAED=0.11;_QI=874|0.75|0.84|0.92|0.91|0.84|13|283|404
tig0007116 exon 46233 47090 46233 ID=Msa1345360-mRNA-1:exon:4920;Parent=Msa1345360-mRNA-1
tig0007116 exon 47404 47666 47404 ID=Msa1345360-mRNA-1:exon:4921;Parent=Msa1345360-mRNA-1
tig0007116 exon 48253 48329 48253 ID=Msa1345360-mRNA-1:exon:4922;Parent=Msa1345360-mRNA-1
tig0007116 exon 48423 48532 48423 ID=Msa1345360-mRNA-1:exon:4923;Parent=Msa1345360-mRNA-1
tig0007116 exon 48623 48737 48623 ID=Msa1345360-mRNA-1:exon:4924;Parent=Msa1345360-mRNA-1
tig0007116 exon 48839 48901 48839 ID=Msa1345360-mRNA-1:exon:4925;Parent=Msa1345360-mRNA-1
tig0007116 exon 48981 49144 48981 ID=Msa1345360-mRNA-1:exon:4926;Parent=Msa1345360-mRNA-1
tig0007116 exon 49657 49718 49657 ID=Msa1345360-mRNA-1:exon:4927;Parent=Msa1345360-mRNA-1
tig0007116 exon 49782 49852 49782 ID=Msa1345360-mRNA-1:exon:4928;Parent=Msa1345360-mRNA-1
tig0007116 exon 50326 50396 50326 ID=Msa1345360-mRNA-1:exon:4929;Parent=Msa1345360-mRNA-1
tig0007116 exon 51211 51276 51211 ID=Msa1345360-mRNA-1:exon:4930;Parent=Msa1345360-mRNA-1
tig0007116 exon 51366 51494 51366 ID=Msa1345360-mRNA-1:exon:4931;Parent=Msa1345360-mRNA-1
tig0007116 exon 51581 51903 51581 ID=Msa1345360-mRNA-1:exon:4932;Parent=Msa1345360-mRNA-1
tig0007116 five_prime_UTR 46233 47090 46233 ID=Msa1345360-mRNA-1:five_prime_utr;Parent=Msa1345360-mRNA-1
tig0007116 five_prime_UTR 47404 47419 47404 ID=Msa1345360-mRNA-1:five_prime_utr;Parent=Msa1345360-mRNA-1
tig0007116 CDS 47420 47666 47420 ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1
tig0007116 CDS 48253 48329 48253 ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1
tig0007116 CDS 48423 48532 48423 ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1
tig0007116 CDS 48623 48737 48623 ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1
tig0007116 CDS 48839 48901 48839 ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1
tig0007116 CDS 48981 49144 48981 ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1
tig0007116 CDS 49657 49718 49657 ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1
tig0007116 CDS 49782 49852 49782 ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1
tig0007116 CDS 50326 50396 50326 ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1
tig0007116 CDS 51211 51276 51211 ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1
tig0007116 CDS 51366 51494 51366 ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1
tig0007116 CDS 51581 51620 51581 ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1
tig0007116 three_prime_UTR 51621 51903 51621 ID=Msa1345360-mRNA-1:three_prime_utr;Parent=Msa1345360-mRNA-1
Gene Sequence

>Msa1345360

ATGTTAATGAAACATGTGGTCATGAATTCTCAGTTACCCTTGTTGTATTGTGCAAAGAATTGTATGCTACTGGCTTCTTCGCCTGTTTTCAGAAGACATCGGTTTTTGATAAGATCTCTTGGATGTAGCATTGATCATCATACCAATTATAGTTCTGGAAAAATGCAGTCTGTTGAGGTTGATGCTGAGAGGGTTATTAGAGAAATTACTCCTGTCCTAGATCGAAGTAGACATAAAGGCCAGACAGGAAACATAGCTGTTATTGGAGGGTGTCGAGAATATACAGGTGCACCATACTTTGCTGCTATTTCAGCCTTAAAAATTGGTGCAGATTTGTCCCATGTATTCTGTACAAAAGATGCTGCTCCTGTCATCAAAAGCTACAGTCCTGAGTTGATTGTGCACCCTGTTTTGGAAGAATCGTATAGTGTCAGGGAGGAGGACAAGAAAAACATATCAATCAAGGTTCTTGCTGAAGTTGGCAAATGGTTAGAAAGGTTTGACTGTCTAGTCATTGGTCCAGGCCTTGGAAGAGACACATTTCTTCTAGACTGTGTGAGTGACATCATAAGACATGCAAGAAAGTCAAACATCCCAATTGTGATAGATGGGGATGGACTTTTTCTTGTTACAAATCACCTTGAACTTGTTAGTGGCTATGCATTAGCTGTTCTAACCCCAAATGTCAATGAATATAAGCGACTTGTACAGAAAGTACTGAGTTCTGAAGTAAATAACGAAGATCCTGCTGAGCAAGTGCTTACTCTTTCCAAACAAATTGGTGGTGTTACTATCCTAAGAAAAGGGAAATCTGATCTAATAAGCGATGGTGACAAAGGTGGGATAATGAATGTCATTTCCTTGTTCTTCCATCTTTCACTTGACCGGCACATTTTCGATTCCAATCAATCAAAACAGTTAGCATCTATGGTTCTCCTAGACGCTGTGGTGGCCAAGGCGATATCCTTTCTGGAAGGCAATGTTGCTGTCTTTTTGGCGTGGGCACGCCAACATATTGAAGCCGCTGGTCCAGATTCATATCTCAGTTCTAAAAATCCAGCAGTGTTGGGATCCATTGCTGGTTCTGCTATGATGAGGAAGGCAGCTTCCCTTGCTTTCTCAAATAAGAAAAGATCAACTGTCACTGGTGACATCATTGAATGCTTAGGGAAAAGTTTGGAAGATATTTGTCCTGCCAGTTCATGCAGTTTGTGA

Protein sequence

>Msa1345360

MLMKHVVMNSQLPLLYCAKNCMLLASSPVFRRHRFLIRSLGCSIDHHTNYSSGKMQSVEVDAERVIREITPVLDRSRHKGQTGNIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPVLEESYSVREEDKKNISIKVLAEVGKWLERFDCLVIGPGLGRDTFLLDCVSDIIRHARKSNIPIVIDGDGLFLVTNHLELVSGYALAVLTPNVNEYKRLVQKVLSSEVNNEDPAEQVLTLSKQIGGVTILRKGKSDLISDGDKGGIMNVISLFFHLSLDRHIFDSNQSKQLASMVLLDAVVAKAISFLEGNVAVFLAWARQHIEAAGPDSYLSSKNPAVLGSIAGSAMMRKAASLAFSNKKRSTVTGDIIECLGKSLEDICPASSCSL*