Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1345360 | XP_039686258.1 | 86.139 | 404 | 31 | 2 | 1 | 404 | 1 | 379 | 0.0 | 684 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1345360 | sp|F6HDM2|NNRD_VITVI | 68.602 | 379 | 91 | 4 | 23 | 399 | 1 | 353 | 1.37e-176 | 499 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1345360 | A0A072VF60 | 86.139 | 404 | 31 | 2 | 1 | 404 | 1 | 379 | 0.0 | 684 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003700 | Msa1345360 | 0.817635 | 2.977893e-52 | -8.615850e-47 |
| Msa0004920 | Msa1345360 | 0.804123 | 2.512511e-49 | -8.615850e-47 |
| Msa0008410 | Msa1345360 | 0.800929 | 1.144373e-48 | -8.615850e-47 |
| Msa0021810 | Msa1345360 | 0.807626 | 4.611319e-50 | -8.615850e-47 |
| Msa0032840 | Msa1345360 | -0.812264 | 4.626766e-51 | -8.615850e-47 |
| Msa0040450 | Msa1345360 | 0.828272 | 9.861202e-55 | -8.615850e-47 |
| Msa0046100 | Msa1345360 | 0.827909 | 1.205522e-54 | -8.615850e-47 |
| Msa0053780 | Msa1345360 | 0.802024 | 6.826110e-49 | -8.615850e-47 |
| Msa0064350 | Msa1345360 | 0.814584 | 1.430121e-51 | -8.615850e-47 |
| Msa0069330 | Msa1345360 | 0.810421 | 1.162322e-50 | -8.615850e-47 |
| Msa0073670 | Msa1345360 | 0.801571 | 8.456029e-49 | -8.615850e-47 |
| Msa0076000 | Msa1345360 | 0.813602 | 2.355629e-51 | -8.615850e-47 |
| Msa0101700 | Msa1345360 | 0.803923 | 2.764327e-49 | -8.615850e-47 |
| Msa0104550 | Msa1345360 | 0.810702 | 1.010563e-50 | -8.615850e-47 |
| Msa0107280 | Msa1345360 | 0.800955 | 1.130220e-48 | -8.615850e-47 |
| Msa0110970 | Msa1345360 | 0.830974 | 2.170659e-55 | -8.615850e-47 |
| Msa0114540 | Msa1345360 | -0.816947 | 4.252492e-52 | -8.615850e-47 |
| Msa1345360 | Msa1346370 | 0.811460 | 6.923720e-51 | -8.615850e-47 |
| Msa1345360 | Msa1367880 | 0.800881 | 1.170745e-48 | -8.615850e-47 |
| Msa1345360 | Msa1373330 | 0.808092 | 3.671075e-50 | -8.615850e-47 |
| Msa1345360 | Msa1374040 | 0.805371 | 1.378676e-49 | -8.615850e-47 |
| Msa1345360 | Msa1390800 | 0.802101 | 6.581499e-49 | -8.615850e-47 |
| Msa1345360 | Msa1397810 | 0.819805 | 9.578589e-53 | -8.615850e-47 |
| Msa1345360 | Msa1404190 | 0.809845 | 1.547246e-50 | -8.615850e-47 |
| Msa1345360 | Msa1404730 | 0.800100 | 1.688851e-48 | -8.615850e-47 |
| Msa1345360 | Msa1417530 | 0.808022 | 3.797868e-50 | -8.615850e-47 |
| Msa1345360 | Msa1423910 | 0.803326 | 3.677744e-49 | -8.615850e-47 |
| Msa1345360 | Msa1460470 | 0.816462 | 5.463155e-52 | -8.615850e-47 |
| Msa0623700 | Msa1345360 | 0.825256 | 5.177428e-54 | -8.615850e-47 |
| Msa0627910 | Msa1345360 | 0.817598 | 3.035484e-52 | -8.615850e-47 |
| Msa0630720 | Msa1345360 | 0.808672 | 2.760282e-50 | -8.615850e-47 |
| Msa0673010 | Msa1345360 | -0.800658 | 1.299695e-48 | -8.615850e-47 |
| Msa0682780 | Msa1345360 | 0.801450 | 8.953027e-49 | -8.615850e-47 |
| Msa0683730 | Msa1345360 | 0.812354 | 4.423384e-51 | -8.615850e-47 |
| Msa0687630 | Msa1345360 | 0.805201 | 1.496502e-49 | -8.615850e-47 |
| Msa0696450 | Msa1345360 | 0.803591 | 3.239919e-49 | -8.615850e-47 |
| Msa0703230 | Msa1345360 | 0.818009 | 2.450839e-52 | -8.615850e-47 |
| Msa0713790 | Msa1345360 | 0.804469 | 2.127913e-49 | -8.615850e-47 |
| Msa0740640 | Msa1345360 | 0.826452 | 2.691712e-54 | -8.615850e-47 |
| Msa0743260 | Msa1345360 | 0.803149 | 4.000911e-49 | -8.615850e-47 |
| Msa0743720 | Msa1345360 | 0.804404 | 2.196012e-49 | -8.615850e-47 |
| Msa0744040 | Msa1345360 | 0.806143 | 9.491676e-50 | -8.615850e-47 |
| Msa0778320 | Msa1345360 | 0.806352 | 8.576944e-50 | -8.615850e-47 |
| Msa0787750 | Msa1345360 | 0.804258 | 2.354600e-49 | -8.615850e-47 |
| Msa0797750 | Msa1345360 | 0.803231 | 3.847153e-49 | -8.615850e-47 |
| Msa0814320 | Msa1345360 | 0.804984 | 1.661182e-49 | -8.615850e-47 |
| Msa0824640 | Msa1345360 | 0.803318 | 3.691533e-49 | -8.615850e-47 |
| Msa0824680 | Msa1345360 | 0.805399 | 1.360468e-49 | -8.615850e-47 |
| Msa0835280 | Msa1345360 | 0.822465 | 2.335367e-53 | -8.615850e-47 |
| Msa0837660 | Msa1345360 | 0.826382 | 2.798159e-54 | -8.615850e-47 |
| Msa0124340 | Msa1345360 | 0.806063 | 9.866254e-50 | -8.615850e-47 |
| Msa0140960 | Msa1345360 | 0.802010 | 6.872802e-49 | -8.615850e-47 |
| Msa0146260 | Msa1345360 | 0.813245 | 2.821644e-51 | -8.615850e-47 |
| Msa0148100 | Msa1345360 | 0.811612 | 6.417352e-51 | -8.615850e-47 |
| Msa0184020 | Msa1345360 | 0.811961 | 5.388493e-51 | -8.615850e-47 |
| Msa0186890 | Msa1345360 | 0.815979 | 7.004599e-52 | -8.615850e-47 |
| Msa0193890 | Msa1345360 | 0.803023 | 4.247460e-49 | -8.615850e-47 |
| Msa0194480 | Msa1345360 | 0.803872 | 2.832680e-49 | -8.615850e-47 |
| Msa0197890 | Msa1345360 | 0.804745 | 1.864250e-49 | -8.615850e-47 |
| Msa0220580 | Msa1345360 | 0.802143 | 6.451819e-49 | -8.615850e-47 |
| Msa0225180 | Msa1345360 | 0.806773 | 6.990188e-50 | -8.615850e-47 |
| Msa0230550 | Msa1345360 | -0.812175 | 4.839382e-51 | -8.615850e-47 |
| Msa0233350 | Msa1345360 | 0.804477 | 2.120208e-49 | -8.615850e-47 |
| Msa1236100 | Msa1345360 | 0.825732 | 3.993500e-54 | -8.615850e-47 |
| Msa1244610 | Msa1345360 | 0.800415 | 1.456756e-48 | -8.615850e-47 |
| Msa1252740 | Msa1345360 | 0.810168 | 1.318155e-50 | -8.615850e-47 |
| Msa1256470 | Msa1345360 | 0.802112 | 6.548752e-49 | -8.615850e-47 |
| Msa1264020 | Msa1345360 | 0.805802 | 1.119563e-49 | -8.615850e-47 |
| Msa1275360 | Msa1345360 | 0.802574 | 5.259769e-49 | -8.615850e-47 |
| Msa1304090 | Msa1345360 | 0.812853 | 3.440076e-51 | -8.615850e-47 |
| Msa1304820 | Msa1345360 | 0.811451 | 6.957111e-51 | -8.615850e-47 |
| Msa1307950 | Msa1345360 | 0.803600 | 3.226063e-49 | -8.615850e-47 |
| Msa1308380 | Msa1345360 | 0.800755 | 1.241727e-48 | -8.615850e-47 |
| Msa1316780 | Msa1345360 | 0.812315 | 4.510495e-51 | -8.615850e-47 |
| Msa1316830 | Msa1345360 | 0.806110 | 9.643703e-50 | -8.615850e-47 |
| Msa1320740 | Msa1345360 | 0.806185 | 9.301417e-50 | -8.615850e-47 |
| Msa1340020 | Msa1345360 | 0.830208 | 3.342887e-55 | -8.615850e-47 |
| Msa1340650 | Msa1345360 | 0.804359 | 2.244154e-49 | -8.615850e-47 |
| Msa0369850 | Msa1345360 | 0.808286 | 3.337881e-50 | -8.615850e-47 |
| Msa0372660 | Msa1345360 | 0.801016 | 1.098506e-48 | -8.615850e-47 |
| Msa0372670 | Msa1345360 | 0.807155 | 5.803769e-50 | -8.615850e-47 |
| Msa0376350 | Msa1345360 | 0.815617 | 8.434718e-52 | -8.615850e-47 |
| Msa0380040 | Msa1345360 | 0.810274 | 1.250383e-50 | -8.615850e-47 |
| Msa0402330 | Msa1345360 | 0.820526 | 6.546496e-53 | -8.615850e-47 |
| Msa0410500 | Msa1345360 | 0.815009 | 1.151619e-51 | -8.615850e-47 |
| Msa0413450 | Msa1345360 | 0.802587 | 5.228184e-49 | -8.615850e-47 |
| Msa0419820 | Msa1345360 | 0.806024 | 1.005355e-49 | -8.615850e-47 |
| Msa0423900 | Msa1345360 | 0.803488 | 3.404044e-49 | -8.615850e-47 |
| Msa0429290 | Msa1345360 | 0.807551 | 4.782531e-50 | -8.615850e-47 |
| Msa0442100 | Msa1345360 | 0.800160 | 1.641732e-48 | -8.615850e-47 |
| Msa0453350 | Msa1345360 | 0.803394 | 3.560355e-49 | -8.615850e-47 |
| Msa0461720 | Msa1345360 | 0.806374 | 8.486401e-50 | -8.615850e-47 |
| Msa0474950 | Msa1345360 | 0.836691 | 8.064988e-57 | -8.615850e-47 |
| Msa0475580 | Msa1345360 | 0.804658 | 1.943332e-49 | -8.615850e-47 |
| Msa0475790 | Msa1345360 | 0.801812 | 7.547552e-49 | -8.615850e-47 |
| Msa0993290 | Msa1345360 | 0.800758 | 1.239952e-48 | -8.615850e-47 |
| Msa0993600 | Msa1345360 | 0.800684 | 1.284007e-48 | -8.615850e-47 |
| Msa1078710 | Msa1345360 | 0.811551 | 6.615114e-51 | -8.615850e-47 |
| Msa1082500 | Msa1345360 | 0.815523 | 8.851024e-52 | -8.615850e-47 |
| Msa1082700 | Msa1345360 | 0.808303 | 3.309115e-50 | -8.615850e-47 |
| Msa1100720 | Msa1345360 | 0.801224 | 9.958023e-49 | -8.615850e-47 |
| Msa1106700 | Msa1345360 | 0.805114 | 1.560511e-49 | -8.615850e-47 |
| Msa0242230 | Msa1345360 | 0.812126 | 4.958349e-51 | -8.615850e-47 |
| Msa0243100 | Msa1345360 | 0.807080 | 6.019038e-50 | -8.615850e-47 |
| Msa0275600 | Msa1345360 | 0.869734 | 2.480631e-66 | -8.615850e-47 |
| Msa0282250 | Msa1345360 | 0.804073 | 2.573763e-49 | -8.615850e-47 |
| Msa0287650 | Msa1345360 | 0.812984 | 3.220318e-51 | -8.615850e-47 |
| Msa0298700 | Msa1345360 | 0.804263 | 2.349546e-49 | -8.615850e-47 |
| Msa0300120 | Msa1345360 | 0.826034 | 3.385180e-54 | -8.615850e-47 |
| Msa0300610 | Msa1345360 | 0.804011 | 2.650873e-49 | -8.615850e-47 |
| Msa0304510 | Msa1345360 | 0.808445 | 3.085688e-50 | -8.615850e-47 |
| Msa0304920 | Msa1345360 | 0.809160 | 2.171025e-50 | -8.615850e-47 |
| Msa0311700 | Msa1345360 | 0.806463 | 8.126298e-50 | -8.615850e-47 |
| Msa0314210 | Msa1345360 | 0.813152 | 2.957733e-51 | -8.615850e-47 |
| Msa0346360 | Msa1345360 | 0.803762 | 2.986597e-49 | -8.615850e-47 |
| Msa0355270 | Msa1345360 | 0.814932 | 1.197714e-51 | -8.615850e-47 |
| Msa1109570 | Msa1345360 | 0.811647 | 6.305626e-51 | -8.615850e-47 |
| Msa1111110 | Msa1345360 | 0.800035 | 1.740912e-48 | -8.615850e-47 |
| Msa1123880 | Msa1345360 | 0.800525 | 1.383783e-48 | -8.615850e-47 |
| Msa1127830 | Msa1345360 | 0.801705 | 7.938309e-49 | -8.615850e-47 |
| Msa1131220 | Msa1345360 | 0.801171 | 1.021005e-48 | -8.615850e-47 |
| Msa1133710 | Msa1345360 | 0.817861 | 2.647003e-52 | -8.615850e-47 |
| Msa1134110 | Msa1345360 | 0.816925 | 4.299825e-52 | -8.615850e-47 |
| Msa1150710 | Msa1345360 | 0.802557 | 5.300838e-49 | -8.615850e-47 |
| Msa1151910 | Msa1345360 | 0.803453 | 3.461201e-49 | -8.615850e-47 |
| Msa1165870 | Msa1345360 | 0.809870 | 1.528010e-50 | -8.615850e-47 |
| Msa1168160 | Msa1345360 | 0.802833 | 4.650259e-49 | -8.615850e-47 |
| Msa1179940 | Msa1345360 | 0.800478 | 1.414353e-48 | -8.615850e-47 |
| Msa1190930 | Msa1345360 | 0.812549 | 4.009056e-51 | -8.615850e-47 |
| Msa1199220 | Msa1345360 | 0.805039 | 1.617863e-49 | -8.615850e-47 |
| Msa1203250 | Msa1345360 | 0.816694 | 4.846525e-52 | -8.615850e-47 |
| Msa1222970 | Msa1345360 | 0.802396 | 5.721835e-49 | -8.615850e-47 |
| Msa0484780 | Msa1345360 | 0.804928 | 1.706613e-49 | -8.615850e-47 |
| Msa0490750 | Msa1345360 | 0.803179 | 3.944342e-49 | -8.615850e-47 |
| Msa0495320 | Msa1345360 | 0.806424 | 8.282810e-50 | -8.615850e-47 |
| Msa0507680 | Msa1345360 | 0.802527 | 5.377453e-49 | -8.615850e-47 |
| Msa0509390 | Msa1345360 | 0.810841 | 9.431020e-51 | -8.615850e-47 |
| Msa0515640 | Msa1345360 | 0.800794 | 1.219233e-48 | -8.615850e-47 |
| Msa0523460 | Msa1345360 | 0.818359 | 2.042417e-52 | -8.615850e-47 |
| Msa0541860 | Msa1345360 | 0.815175 | 1.057698e-51 | -8.615850e-47 |
| Msa0547140 | Msa1345360 | 0.816926 | 4.297617e-52 | -8.615850e-47 |
| Msa0547360 | Msa1345360 | 0.801643 | 8.173318e-49 | -8.615850e-47 |
| Msa0552810 | Msa1345360 | 0.815279 | 1.002892e-51 | -8.615850e-47 |
| Msa0844240 | Msa1345360 | 0.804900 | 1.730145e-49 | -8.615850e-47 |
| Msa0850960 | Msa1345360 | 0.814852 | 1.247402e-51 | -8.615850e-47 |
| Msa0863870 | Msa1345360 | 0.815513 | 8.895416e-52 | -8.615850e-47 |
| Msa0864010 | Msa1345360 | 0.803763 | 2.985394e-49 | -8.615850e-47 |
| Msa0896970 | Msa1345360 | 0.807565 | 4.750726e-50 | -8.615850e-47 |
| Msa0900630 | Msa1345360 | 0.800052 | 1.726604e-48 | -8.615850e-47 |
| Msa0930780 | Msa1345360 | 0.800392 | 1.472327e-48 | -8.615850e-47 |
| Msa0937670 | Msa1345360 | 0.807556 | 4.770891e-50 | -8.615850e-47 |
| Msa0944190 | Msa1345360 | 0.801524 | 8.646995e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1345360 | MtrunA17_Chr2g0287881 | 86.139 | 404 | 31 | 2 | 1 | 404 | 1 | 379 | 0.0 | 684 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1345360 | AT5G19150.2 | 62.500 | 376 | 102 | 7 | 29 | 400 | 25 | 365 | 2.13e-153 | 438 |
| Msa1345360 | AT5G19150.1 | 62.500 | 376 | 102 | 7 | 29 | 400 | 25 | 365 | 2.13e-153 | 438 |
Find 115 sgRNAs with CRISPR-Local
Find 321 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGAGCTTAGTACCTTTC+TGG | 0.072207 | tig0007116:+47044 | Msa1345360:five_prime_UTR |
| AATTGGTTTCAAACCTTATT+TGG | 0.090433 | tig0007116:-46696 | Msa1345370:CDS |
| CGCTTATATTCATTGACATT+TGG | 0.238912 | tig0007116:-49047 | None:intergenic |
| GGCCAAGGCGATATCCTTTC+TGG | 0.241899 | tig0007116:+50367 | Msa1345360:CDS |
| ACTTGAGCTTTCTCCAAATA+AGG | 0.250781 | tig0007116:+46683 | Msa1345360:five_prime_UTR |
| GCTTATATTCATTGACATTT+GGG | 0.266006 | tig0007116:-49046 | None:intergenic |
| TATAAAATGTGTCGAGTTAC+TGG | 0.275300 | tig0007116:+51635 | Msa1345360:three_prime_UTR |
| GTCAAAACAGTTAGCATCTA+TGG | 0.286837 | tig0007116:+50325 | Msa1345360:intron |
| TTCATCTTCATATCTGATTT+CGG | 0.288987 | tig0007116:+46779 | Msa1345360:five_prime_UTR |
| CTCAAGTCTTTGTTTGTTCA+AGG | 0.299635 | tig0007116:+51727 | Msa1345360:three_prime_UTR |
| CAAGCAAATCACCAGATAAT+TGG | 0.300290 | tig0007116:+46407 | Msa1345360:five_prime_UTR |
| GTTGATTGTGCACCCTGTTT+TGG | 0.311517 | tig0007116:+48491 | Msa1345360:CDS |
| CTTTATGTCTACTTCGATCT+AGG | 0.313756 | tig0007116:-47635 | None:intergenic |
| CTTTGGTCTGTCATAATGTA+TGG | 0.314126 | tig0007116:-46346 | None:intergenic |
| GCACATATACTCTTCGAATT+AGG | 0.315076 | tig0007116:-46243 | None:intergenic |
| TAGGTCAGGAATAGTGGTTT+TGG | 0.325123 | tig0007116:-46750 | Msa1345370:CDS |
| TCAGGAAACATAGCTGTTAT+TGG | 0.331184 | tig0007116:+48249 | Msa1345360:intron |
| CATCATACCAATTATAGTTC+TGG | 0.333386 | tig0007116:+47555 | Msa1345360:CDS |
| TAGTTTGTTGTATTTAATAA+AGG | 0.340075 | tig0007116:+51676 | Msa1345360:three_prime_UTR |
| TGACCCATCTTCTGATTTCA+AGG | 0.345670 | tig0007116:-46612 | Msa1345370:CDS |
| AACATCCCAATTGTGATAGA+TGG | 0.346293 | tig0007116:+48878 | Msa1345360:CDS |
| TCTGAGCTTAGTACCTTTCT+GGG | 0.349937 | tig0007116:+47045 | Msa1345360:five_prime_UTR |
| CGGCATGAACATTACTTGAT+TGG | 0.356842 | tig0007116:-49845 | None:intergenic |
| GCAGTGTTGGGATCCATTGC+TGG | 0.361523 | tig0007116:+51379 | Msa1345360:CDS |
| TTCTGTGCACACCAATTATC+TGG | 0.362548 | tig0007116:-46418 | None:intergenic |
| CTAGTCATTGGTCCAGGCCT+TGG | 0.363699 | tig0007116:+48696 | Msa1345360:CDS |
| CATACCCCATCTATCACAAT+TGG | 0.364871 | tig0007116:-48884 | None:intergenic |
| TTTGTTGTTAGTTTGTCTTA+TGG | 0.372047 | tig0007116:-46307 | None:intergenic |
| TGCAATTAGGTCAGGAATAG+TGG | 0.380299 | tig0007116:-46756 | Msa1345370:CDS |
| CTATACGATTCTTCCAAAAC+AGG | 0.387268 | tig0007116:-48504 | None:intergenic |
| TCTGTTGATATCAGTTTCAA+TGG | 0.399526 | tig0007116:-46380 | None:intergenic |
| CAAACAAAGACTTGAGTTGA+TGG | 0.417241 | tig0007116:-51720 | None:intergenic |
| GGTGTTACTATCCTAAGAAA+AGG | 0.417575 | tig0007116:+49664 | Msa1345360:CDS |
| TGTGAATAGGGGTTGCTGTT+TGG | 0.421326 | tig0007116:+47395 | Msa1345360:intron |
| AATCACCTTGAACTTGTTAG+TGG | 0.422168 | tig0007116:+49002 | Msa1345360:CDS |
| TTCACATTCAAATTCATCAT+AGG | 0.422511 | tig0007116:-46865 | None:intergenic |
| ATCAAGGTTCTTGCTGAAGT+TGG | 0.425502 | tig0007116:+48648 | Msa1345360:CDS |
| AGAGTAAGCACTTGCTCAGC+AGG | 0.425937 | tig0007116:-49113 | None:intergenic |
| GACGTGCACGTGTTCCCAAC+TGG | 0.429006 | tig0007116:-46968 | None:intergenic |
| AACCGATGTCTTCTGAAAAC+AGG | 0.444182 | tig0007116:-47501 | None:intergenic |
| GCAAGAATTGTGTACCTGTC+TGG | 0.447406 | tig0007116:-47659 | None:intergenic |
| GACTGTCTAGTCATTGGTCC+AGG | 0.449752 | tig0007116:+48690 | Msa1345360:CDS |
| GCTGAAATAGCAGCAAAGTA+TGG | 0.452837 | tig0007116:-48297 | None:intergenic |
| GTGTTGAATTGAAGAGAGTA+TGG | 0.457059 | tig0007116:-46810 | None:intergenic |
| TCTTCCATCTTTCACTTGAC+CGG | 0.460546 | tig0007116:+49809 | Msa1345360:CDS |
| TCATTGAATGCTTAGGGAAA+AGG | 0.460736 | tig0007116:+51473 | Msa1345360:CDS |
| TATGGTGGTTAAGCAGTGAT+TGG | 0.463655 | tig0007116:-46289 | None:intergenic |
| AAGTTGGCAAATGGTTAGAA+AGG | 0.464587 | tig0007116:+48664 | Msa1345360:CDS |
| AGGTTTGACTGTCTAGTCAT+TGG | 0.469835 | tig0007116:+48684 | Msa1345360:CDS |
| GGTACTAAGCTCAGAAATTG+AGG | 0.471229 | tig0007116:-47037 | None:intergenic |
| GGTGACATCATTGAATGCTT+AGG | 0.472445 | tig0007116:+51466 | Msa1345360:CDS |
| ATATGAAGATGAATGCAATT+AGG | 0.474166 | tig0007116:-46769 | Msa1345370:CDS |
| GTGACATCATTGAATGCTTA+GGG | 0.475692 | tig0007116:+51467 | Msa1345360:CDS |
| CTAGATCGAAGTAGACATAA+AGG | 0.479089 | tig0007116:+47636 | Msa1345360:CDS |
| TGGAAGAATCGTATAGTGTC+AGG | 0.480517 | tig0007116:+48511 | Msa1345360:CDS |
| TGCAAAGAATTGTATGCTAC+TGG | 0.482117 | tig0007116:+47470 | Msa1345360:CDS |
| AATGTGTCTCTTCCAAGGCC+TGG | 0.488920 | tig0007116:-48708 | None:intergenic |
| GTTAACCTGAGATATGAATC+TGG | 0.489466 | tig0007116:-51260 | None:intergenic |
| ACATCCCAATTGTGATAGAT+GGG | 0.491513 | tig0007116:+48879 | Msa1345360:CDS |
| AAGATGAATGCAATTAGGTC+AGG | 0.497334 | tig0007116:-46764 | Msa1345370:CDS |
| CCTAGACGCTGTGGTGGCCA+AGG | 0.497476 | tig0007116:+50352 | Msa1345360:CDS |
| TTCTTGCTGAAGTTGGCAAA+TGG | 0.497957 | tig0007116:+48655 | Msa1345360:CDS |
| CATAGCCACTAACAAGTTCA+AGG | 0.498864 | tig0007116:-49007 | None:intergenic |
| AGGTCACAAACTGCATGAAC+TGG | 0.501937 | tig0007116:-51601 | None:intergenic |
| CTGGTCCAGATTCATATCTC+AGG | 0.505172 | tig0007116:+51255 | Msa1345360:CDS |
| GTTGTTAGTTTGTCTTATGG+TGG | 0.514081 | tig0007116:-46304 | None:intergenic |
| AAGAAAAGATCAACTGTCAC+TGG | 0.520063 | tig0007116:+51445 | Msa1345360:CDS |
| GATTCCTTGAAATCAGAAGA+TGG | 0.525934 | tig0007116:+46608 | Msa1345360:five_prime_UTR |
| GCAATGGATCCCAACACTGC+TGG | 0.527491 | tig0007116:-51376 | None:intergenic |
| ATTGTGTATGTTGTTGAAGA+AGG | 0.533476 | tig0007116:-51893 | None:intergenic |
| AAATCACTTGCCTTCCAGAA+AGG | 0.533730 | tig0007116:-50381 | None:intergenic |
| GTACTAAGCTCAGAAATTGA+GGG | 0.535519 | tig0007116:-47036 | None:intergenic |
| TGTCTACTTCGATCTAGGAC+AGG | 0.537753 | tig0007116:-47630 | None:intergenic |
| CGCCAACATATTGAAGCCGC+TGG | 0.538329 | tig0007116:+51236 | Msa1345360:CDS |
| CCTTGGCCACCACAGCGTCT+AGG | 0.541683 | tig0007116:-50352 | None:intergenic |
| AAAGACTAATTTCAGGGAGG+AGG | 0.546606 | tig0007116:+48608 | Msa1345360:intron |
| ATACCCCATCTATCACAATT+GGG | 0.552293 | tig0007116:-48883 | None:intergenic |
| GTGTTACTATCCTAAGAAAA+GGG | 0.553052 | tig0007116:+49665 | Msa1345360:CDS |
| TCTTCGAATTAGGCATGTCC+TGG | 0.554035 | tig0007116:-46233 | None:intergenic |
| GACCAGCGGCTTCAATATGT+TGG | 0.558603 | tig0007116:-51238 | None:intergenic |
| AGTAGACATAAAGGCCAGAC+AGG | 0.560312 | tig0007116:+47645 | Msa1345360:CDS |
| GGAGGGTGTCGAGAATATAC+AGG | 0.562370 | tig0007116:+48270 | Msa1345360:CDS |
| CACAAACTGCATGAACTGGC+AGG | 0.564675 | tig0007116:-51597 | None:intergenic |
| TGTGCCGGTCAAGTGAAAGA+TGG | 0.565646 | tig0007116:-49813 | None:intergenic |
| CATCATAGCAGAACCAGCAA+TGG | 0.569174 | tig0007116:-51392 | None:intergenic |
| TTCCAGAAAGGATATCGCCT+TGG | 0.569656 | tig0007116:-50369 | None:intergenic |
| CTTATATTCATTGACATTTG+GGG | 0.570403 | tig0007116:-49045 | None:intergenic |
| AAAATTACTCTAGCCCAGAA+AGG | 0.570694 | tig0007116:-47058 | None:intergenic |
| ATTCCTTGAAATCAGAAGAT+GGG | 0.574749 | tig0007116:+46609 | Msa1345360:five_prime_UTR |
| GGAAACATAGCTGTTATTGG+AGG | 0.581792 | tig0007116:+48252 | Msa1345360:intron |
| CTAATAAGCGATGGTGACAA+AGG | 0.586144 | tig0007116:+49697 | Msa1345360:CDS |
| GAAGAAATGTGTCTCTTCCA+AGG | 0.587504 | tig0007116:-48713 | None:intergenic |
| TCAACAGCAGCAGCAAAATG+AGG | 0.591319 | tig0007116:-46660 | Msa1345370:CDS |
| TTTGGTCTGTCATAATGTAT+GGG | 0.594954 | tig0007116:-46345 | None:intergenic |
| GATTGGAATCGAAAATGTGC+CGG | 0.596537 | tig0007116:-49828 | None:intergenic |
| TTTCTTATTTGAGAAAGCAA+GGG | 0.602286 | tig0007116:-51428 | None:intergenic |
| CTGTTGAGGTTGATGCTGAG+AGG | 0.602725 | tig0007116:+47589 | Msa1345360:CDS |
| AAATCTGATCTAATAAGCGA+TGG | 0.625347 | tig0007116:+49688 | Msa1345360:CDS |
| TGTTGAGGTTGATGCTGAGA+GGG | 0.627704 | tig0007116:+47590 | Msa1345360:CDS |
| TCTATCTCTTTCCCTGAACG+TGG | 0.628499 | tig0007116:-46587 | Msa1345370:CDS |
| GGTTCTCCTAGACGCTGTGG+TGG | 0.634816 | tig0007116:+50346 | Msa1345360:CDS |
| TGTTCAAGGCAACGTTTGTG+TGG | 0.635749 | tig0007116:+51741 | Msa1345360:three_prime_UTR |
| GAAACATAGCTGTTATTGGA+GGG | 0.636930 | tig0007116:+48253 | Msa1345360:CDS |
| ACAGGGTGCACAATCAACTC+AGG | 0.644569 | tig0007116:-48486 | None:intergenic |
| TGGTTCTGCTATGATGAGGA+AGG | 0.646503 | tig0007116:+51399 | Msa1345360:CDS |
| ATTCTTTGCACAATACAACA+AGG | 0.649931 | tig0007116:-47457 | None:intergenic |
| GAGATATGAATCTGGACCAG+CGG | 0.651593 | tig0007116:-51252 | None:intergenic |
| AAGTGAAAGATGGAAGAACA+AGG | 0.652463 | tig0007116:-49803 | None:intergenic |
| CATCCCAATTGTGATAGATG+GGG | 0.653855 | tig0007116:+48880 | Msa1345360:CDS |
| TTCTTTGCACAATACAACAA+GGG | 0.653862 | tig0007116:-47456 | None:intergenic |
| AAGGCGATATCCTTTCTGGA+AGG | 0.654435 | tig0007116:+50371 | Msa1345360:CDS |
| TATGGTTCTCCTAGACGCTG+TGG | 0.663571 | tig0007116:+50343 | Msa1345360:CDS |
| TTGCTGGTTCTGCTATGATG+AGG | 0.663985 | tig0007116:+51395 | Msa1345360:CDS |
| GGTCATGTTAATGAAACATG+TGG | 0.675238 | tig0007116:+47416 | Msa1345360:exon |
| TATACGATTCTTCCAAAACA+GGG | 0.700328 | tig0007116:-48503 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAAAAAATGAAGATA+TGG | - | tig0007116:47689-47708 | None:intergenic | 10.0% |
| !!! | TTCATTTTTTTTTTAATAAC+TGG | + | tig0007116:47693-47712 | Msa1345360:intron | 10.0% |
| !! | AAAAAATTGTTTATAATACC+TGG | - | tig0007116:47090-47109 | None:intergenic | 15.0% |
| !!! | TGTATTTTGTTATCAAAATT+TGG | + | tig0007116:47185-47204 | Msa1345360:intron | 15.0% |
| !! | AAAATTTGGTTATAAGAATT+AGG | + | tig0007116:47199-47218 | Msa1345360:intron | 15.0% |
| !! | AAATTTGGTTATAAGAATTA+GGG | + | tig0007116:47200-47219 | Msa1345360:intron | 15.0% |
| !!! | TTTTTTATTTTGTGAATTCA+TGG | + | tig0007116:47258-47277 | Msa1345360:intron | 15.0% |
| !!! | AATTCTAATATCAATTTTCA+TGG | - | tig0007116:47338-47357 | None:intergenic | 15.0% |
| !! | ATGAAAATTGATATTAGAAT+TGG | + | tig0007116:47337-47356 | Msa1345360:intron | 15.0% |
| !! | TGAAAATTGATATTAGAATT+GGG | + | tig0007116:47338-47357 | Msa1345360:intron | 15.0% |
| !! | GGTGTTAATTATATATTAAA+AGG | + | tig0007116:47810-47829 | Msa1345360:intron | 15.0% |
| !! | TCAATCTTATGAAATATAAT+AGG | + | tig0007116:49315-49334 | Msa1345360:intron | 15.0% |
| !!! | AAAATCAGAAGAAATTTTAA+AGG | + | tig0007116:50626-50645 | Msa1345360:intron | 15.0% |
| !! | GAACAAAAATATAATTATCA+AGG | - | tig0007116:51343-51362 | None:intergenic | 15.0% |
| !!! | AATACAACAAACTATTTTTT+AGG | - | tig0007116:51670-51689 | None:intergenic | 15.0% |
| !!! | TAGTTTGTTGTATTTAATAA+AGG | + | tig0007116:51676-51695 | Msa1345360:three_prime_UTR | 15.0% |
| !!! | GAATAAATGTTTTTTTTTAC+AGG | + | tig0007116:51852-51871 | Msa1345360:three_prime_UTR | 15.0% |
| !!! | TAGAGTAATTTTTATTTTCC+AGG | + | tig0007116:47069-47088 | Msa1345360:five_prime_UTR | 20.0% |
| !! | AAACACAACATTTGAATAAA+GGG | - | tig0007116:47129-47148 | None:intergenic | 20.0% |
| !! | AATTTGGTTATAAGAATTAG+GGG | + | tig0007116:47201-47220 | Msa1345360:intron | 20.0% |
| !! | GAAAATTGATATTAGAATTG+GGG | + | tig0007116:47339-47358 | Msa1345360:intron | 20.0% |
| !! | AAAATTGATATTAGAATTGG+GGG | + | tig0007116:47340-47359 | Msa1345360:intron | 20.0% |
| !!! | TTTTTAAGGTATTCATGTTT+GGG | + | tig0007116:47370-47389 | Msa1345360:intron | 20.0% |
| !! | GAAATGTTTAGAAAACAAAA+AGG | - | tig0007116:48103-48122 | None:intergenic | 20.0% |
| !! | TTTCAATTATGTTTCAAATC+AGG | + | tig0007116:48231-48250 | Msa1345360:intron | 20.0% |
| !!! | ACAAGTACTAACAATTTTTA+AGG | - | tig0007116:48322-48341 | None:intergenic | 20.0% |
| !! | TTTAATGAAAGACTAATTTC+AGG | + | tig0007116:48601-48620 | Msa1345360:intron | 20.0% |
| !! | TTAATGAAAGACTAATTTCA+GGG | + | tig0007116:48602-48621 | Msa1345360:intron | 20.0% |
| !! | TTTATTATACACTTGGAAAT+AGG | + | tig0007116:48784-48803 | Msa1345360:intron | 20.0% |
| !!! | TTTTATGATTTACACAAGTT+AGG | - | tig0007116:49243-49262 | None:intergenic | 20.0% |
| !! | TATGAAATATAATAGGCTAA+TGG | + | tig0007116:49322-49341 | Msa1345360:intron | 20.0% |
| !!! | TTCAATTTTATGTTCAAGTT+TGG | + | tig0007116:49439-49458 | Msa1345360:intron | 20.0% |
| !!! | GTTCTTTTTCTCAATATAAA+TGG | - | tig0007116:49964-49983 | None:intergenic | 20.0% |
| !! | TACACAAACTTAAAATTACT+TGG | + | tig0007116:50081-50100 | Msa1345360:intron | 20.0% |
| !!! | TTGGTTGATGTTTAAATAAA+TGG | + | tig0007116:50100-50119 | Msa1345360:intron | 20.0% |
| !!! | TGGTTGATGTTTAAATAAAT+GGG | + | tig0007116:50101-50120 | Msa1345360:intron | 20.0% |
| !! | ATAAAGTAAGAAACTAACAA+GGG | - | tig0007116:50567-50586 | None:intergenic | 20.0% |
| !!! | TGTTACTTTAAAACAACTAT+TGG | - | tig0007116:50780-50799 | None:intergenic | 20.0% |
| !!! | TTTAAGGTCATTAAATTTAG+TGG | + | tig0007116:50946-50965 | Msa1345360:intron | 20.0% |
| !! | CAACTAATGTATTTCATTTA+AGG | + | tig0007116:50980-50999 | Msa1345360:intron | 20.0% |
| !! | GTCAAAAATTGTTTCATTTA+AGG | - | tig0007116:51037-51056 | None:intergenic | 20.0% |
| !!! | TAACGTTTTCTATTTTTCTT+AGG | + | tig0007116:51279-51298 | Msa1345360:intron | 20.0% |
| !!! | ATTTTATTGTCTTCCTAAAT+TGG | - | tig0007116:51812-51831 | None:intergenic | 20.0% |
| !!! | TTTGTTGTTAGTTTGTCTTA+TGG | - | tig0007116:46310-46329 | None:intergenic | 25.0% |
| !!! | ATTTTTTATTAACCACGTTC+AGG | + | tig0007116:46575-46594 | Msa1345360:five_prime_UTR | 25.0% |
| !!! | TTTTTTATTAACCACGTTCA+GGG | + | tig0007116:46576-46595 | Msa1345360:five_prime_UTR | 25.0% |
| !! | AATTGGTTTCAAACCTTATT+TGG | - | tig0007116:46699-46718 | Msa1345370:CDS | 25.0% |
| ! | ATATGAAGATGAATGCAATT+AGG | - | tig0007116:46772-46791 | Msa1345370:CDS | 25.0% |
| ! | TTCATCTTCATATCTGATTT+CGG | + | tig0007116:46779-46798 | Msa1345360:five_prime_UTR | 25.0% |
| ! | TTCACATTCAAATTCATCAT+AGG | - | tig0007116:46868-46887 | None:intergenic | 25.0% |
| !!! | TTGAGTTGAATTTTGATACT+AGG | + | tig0007116:46888-46907 | Msa1345360:five_prime_UTR | 25.0% |
| !!! | TGAGTTGAATTTTGATACTA+GGG | + | tig0007116:46889-46908 | Msa1345360:five_prime_UTR | 25.0% |
| ! | CAAACACAACATTTGAATAA+AGG | - | tig0007116:47130-47149 | None:intergenic | 25.0% |
| ! | ATAAAGACTCAAATCTTTAG+AGG | - | tig0007116:47303-47322 | None:intergenic | 25.0% |
| ! | AAATTGATATTAGAATTGGG+GGG | + | tig0007116:47341-47360 | Msa1345360:intron | 25.0% |
| !!! | GTTTTTAAGGTATTCATGTT+TGG | + | tig0007116:47369-47388 | Msa1345360:intron | 25.0% |
| !! | CATTTTTCCAGAACTATAAT+TGG | - | tig0007116:47565-47584 | None:intergenic | 25.0% |
| ! | AGATTTGCCTCTTAAAAAAA+TGG | - | tig0007116:47760-47779 | None:intergenic | 25.0% |
| ! | AAATACATATAAGCTATGCT+AGG | - | tig0007116:48162-48181 | None:intergenic | 25.0% |
| !! | ATCTTTTGTACAGAATACAT+GGG | - | tig0007116:48439-48458 | None:intergenic | 25.0% |
| ! | CATTAAAAACAACATTCACT+AGG | - | tig0007116:48588-48607 | None:intergenic | 25.0% |
| ! | CAAGAAAAACATATCAATCA+AGG | + | tig0007116:48632-48651 | Msa1345360:CDS | 25.0% |
| ! | CTTATATTCATTGACATTTG+GGG | - | tig0007116:49048-49067 | None:intergenic | 25.0% |
| ! | GCTTATATTCATTGACATTT+GGG | - | tig0007116:49049-49068 | None:intergenic | 25.0% |
| ! | CAAATAGAACAACTAAAATG+AGG | - | tig0007116:49155-49174 | None:intergenic | 25.0% |
| ! | GTTTAAATCACTATCCATAT+AGG | - | tig0007116:49275-49294 | None:intergenic | 25.0% |
| !! | AGTCAATTGACAATTTTCAA+GGG | + | tig0007116:49385-49404 | Msa1345360:intron | 25.0% |
| ! | AGCATGATAAATTGTTTGAT+TGG | + | tig0007116:49549-49568 | Msa1345360:intron | 25.0% |
| ! | CTTCGATAAATATAAAATCC+CGG | + | tig0007116:49725-49744 | Msa1345360:intron | 25.0% |
| ! | CTTGTATATAACATGTCATA+CGG | - | tig0007116:49896-49915 | None:intergenic | 25.0% |
| !! | AACAAGATTTTGTGTAAAAG+AGG | - | tig0007116:50054-50073 | None:intergenic | 25.0% |
| !!! | TAGAGACTGTTTTAAACATT+TGG | + | tig0007116:50222-50241 | Msa1345360:intron | 25.0% |
| ! | GATAAAGTAAGAAACTAACA+AGG | - | tig0007116:50568-50587 | None:intergenic | 25.0% |
| !! | CTCTTTCTATTTTCTTTTCA+GGG | - | tig0007116:50658-50677 | None:intergenic | 25.0% |
| !! | TCTCTTTCTATTTTCTTTTC+AGG | - | tig0007116:50659-50678 | None:intergenic | 25.0% |
| ! | CCTTAAATGAACAGTATTAT+AGG | - | tig0007116:50933-50952 | None:intergenic | 25.0% |
| ! | CCTATAATACTGTTCATTTA+AGG | + | tig0007116:50930-50949 | Msa1345360:intron | 25.0% |
| ! | ACAGGGAGATAAATAAAAAT+TGG | - | tig0007116:51059-51078 | None:intergenic | 25.0% |
| !! | TTTCTTATTTGAGAAAGCAA+GGG | - | tig0007116:51431-51450 | None:intergenic | 25.0% |
| !!! | TTTTCTTATTTGAGAAAGCA+AGG | - | tig0007116:51432-51451 | None:intergenic | 25.0% |
| !! | ACACATTTTATACAAGTGTT+TGG | - | tig0007116:51627-51646 | None:intergenic | 25.0% |
| !!! | TGTCGTGAATTTTTTAATGA+TGG | + | tig0007116:51786-51805 | Msa1345360:three_prime_UTR | 25.0% |
| !! | TTTTTAATGATGGCCAATTT+AGG | + | tig0007116:51796-51815 | Msa1345360:three_prime_UTR | 25.0% |
| TTTGGTCTGTCATAATGTAT+GGG | - | tig0007116:46348-46367 | None:intergenic | 30.0% | |
| !!! | CAATGGTTTGATTTTAGCTT+TGG | - | tig0007116:46366-46385 | None:intergenic | 30.0% |
| TCTGTTGATATCAGTTTCAA+TGG | - | tig0007116:46383-46402 | None:intergenic | 30.0% | |
| ! | TTTCTCTTTGCTTCTGTTTT+GGG | - | tig0007116:46547-46566 | None:intergenic | 30.0% |
| ! | TTTTCTCTTTGCTTCTGTTT+TGG | - | tig0007116:46548-46567 | None:intergenic | 30.0% |
| ATTCCTTGAAATCAGAAGAT+GGG | + | tig0007116:46609-46628 | Msa1345360:five_prime_UTR | 30.0% | |
| !! | GGTTATTTGAGTTTTCGAAT+TGG | - | tig0007116:46716-46735 | Msa1345370:CDS | 30.0% |
| ! | TCATGTTTGGGTTTATGAAT+AGG | + | tig0007116:47230-47249 | Msa1345360:intron | 30.0% |
| TTCTTTGCACAATACAACAA+GGG | - | tig0007116:47459-47478 | None:intergenic | 30.0% | |
| ATTCTTTGCACAATACAACA+AGG | - | tig0007116:47460-47479 | None:intergenic | 30.0% | |
| CATCATACCAATTATAGTTC+TGG | + | tig0007116:47555-47574 | Msa1345360:CDS | 30.0% | |
| !!! | TGTGCTACCATTTTTTTAAG+AGG | + | tig0007116:47750-47769 | Msa1345360:intron | 30.0% |
| ! | TCAAACACTGACTACTAATA+GGG | - | tig0007116:47968-47987 | None:intergenic | 30.0% |
| ! | TTCAAACACTGACTACTAAT+AGG | - | tig0007116:47969-47988 | None:intergenic | 30.0% |
| GTTTAGAAAACAAAAAGGCA+AGG | - | tig0007116:48098-48117 | None:intergenic | 30.0% | |
| AGGCATATTTGCAATAATCA+GGG | - | tig0007116:48142-48161 | None:intergenic | 30.0% | |
| TAGGCATATTTGCAATAATC+AGG | - | tig0007116:48143-48162 | None:intergenic | 30.0% | |
| ! | CATCTTTTGTACAGAATACA+TGG | - | tig0007116:48440-48459 | None:intergenic | 30.0% |
| TATACGATTCTTCCAAAACA+GGG | - | tig0007116:48506-48525 | None:intergenic | 30.0% | |
| TCCAAGTGTATAATAAAGCT+GGG | - | tig0007116:48781-48800 | None:intergenic | 30.0% | |
| TTCCAAGTGTATAATAAAGC+TGG | - | tig0007116:48782-48801 | None:intergenic | 30.0% | |
| !! | AACATTTTGACAATGTTACC+AGG | + | tig0007116:48817-48836 | Msa1345360:intron | 30.0% |
| AAGTGTATTGCTTACTGTTT+CGG | + | tig0007116:48948-48967 | Msa1345360:intron | 30.0% | |
| CGCTTATATTCATTGACATT+TGG | - | tig0007116:49050-49069 | None:intergenic | 30.0% | |
| AAAATGAGGAACTTACTGTT+TGG | - | tig0007116:49141-49160 | None:intergenic | 30.0% | |
| ! | TAAAAAGCATGCTACCTATA+TGG | + | tig0007116:49258-49277 | Msa1345360:intron | 30.0% |
| TTTCATAAGATTGAATGCAG+TGG | - | tig0007116:49309-49328 | None:intergenic | 30.0% | |
| CTTGAAAATTGTCAATTGAC+TGG | - | tig0007116:49386-49405 | None:intergenic | 30.0% | |
| ! | CAGTCAATTGACAATTTTCA+AGG | + | tig0007116:49384-49403 | Msa1345360:intron | 30.0% |
| !! | AAGTTTTGTACTTAGTACCA+GGG | - | tig0007116:49608-49627 | None:intergenic | 30.0% |
| !! | AAAGTTTTGTACTTAGTACC+AGG | - | tig0007116:49609-49628 | None:intergenic | 30.0% |
| CAAAACTTTAATGACAGTTG+TGG | + | tig0007116:49620-49639 | Msa1345360:intron | 30.0% | |
| ! | GTGTTACTATCCTAAGAAAA+GGG | + | tig0007116:49665-49684 | Msa1345360:CDS | 30.0% |
| AAATCTGATCTAATAAGCGA+TGG | + | tig0007116:49688-49707 | Msa1345360:CDS | 30.0% | |
| AAATAAGAAACCAGACAAGA+AGG | - | tig0007116:49755-49774 | None:intergenic | 30.0% | |
| !! | TCTTGTCTGGTTTCTTATTT+TGG | + | tig0007116:49755-49774 | Msa1345360:intron | 30.0% |
| !!! | CTTGTCTGGTTTCTTATTTT+GGG | + | tig0007116:49756-49775 | Msa1345360:intron | 30.0% |
| ! | TTTTAGCAGAACTGTTCATT+TGG | - | tig0007116:50002-50021 | None:intergenic | 30.0% |
| !! | ACTGTTTTAAACATTTGGCA+TGG | + | tig0007116:50227-50246 | Msa1345360:intron | 30.0% |
| !! | CTGTTTTAAACATTTGGCAT+GGG | + | tig0007116:50228-50247 | Msa1345360:intron | 30.0% |
| !! | TGTTTTAAACATTTGGCATG+GGG | + | tig0007116:50229-50248 | Msa1345360:intron | 30.0% |
| AAATGGTTTCGAAACATCTT+TGG | - | tig0007116:50282-50301 | None:intergenic | 30.0% | |
| TGTTTCGAAACCATTTGATT+TGG | + | tig0007116:50286-50305 | Msa1345360:intron | 30.0% | |
| ! | GTTTCGAAACCATTTGATTT+GGG | + | tig0007116:50287-50306 | Msa1345360:intron | 30.0% |
| AATAACAGACCCAAATCAAA+TGG | - | tig0007116:50299-50318 | None:intergenic | 30.0% | |
| TTGCTCTTCTTTATGTCATA+TGG | + | tig0007116:50466-50485 | Msa1345360:intron | 30.0% | |
| !!! | CATTTTTTGATAGCGAATTG+TGG | + | tig0007116:50854-50873 | Msa1345360:intron | 30.0% |
| ATCTATTCTTTCTTGCAGTT+TGG | + | tig0007116:51563-51582 | Msa1345360:intron | 30.0% | |
| ! | CATTTTATACAAGTGTTTGG+AGG | - | tig0007116:51624-51643 | None:intergenic | 30.0% |
| TATAAAATGTGTCGAGTTAC+TGG | + | tig0007116:51635-51654 | Msa1345360:three_prime_UTR | 30.0% | |
| GCACATATACTCTTCGAATT+AGG | - | tig0007116:46246-46265 | None:intergenic | 35.0% | |
| !! | GTTGTTAGTTTGTCTTATGG+TGG | - | tig0007116:46307-46326 | None:intergenic | 35.0% |
| CTTTGGTCTGTCATAATGTA+TGG | - | tig0007116:46349-46368 | None:intergenic | 35.0% | |
| CAAGCAAATCACCAGATAAT+TGG | + | tig0007116:46407-46426 | Msa1345360:five_prime_UTR | 35.0% | |
| GATTCCTTGAAATCAGAAGA+TGG | + | tig0007116:46608-46627 | Msa1345360:five_prime_UTR | 35.0% | |
| ACTTGAGCTTTCTCCAAATA+AGG | + | tig0007116:46683-46702 | Msa1345360:five_prime_UTR | 35.0% | |
| AAGATGAATGCAATTAGGTC+AGG | - | tig0007116:46767-46786 | Msa1345370:CDS | 35.0% | |
| GTGTTGAATTGAAGAGAGTA+TGG | - | tig0007116:46813-46832 | None:intergenic | 35.0% | |
| !!! | GTTTTGAGAATCTTCCAGTT+GGG | + | tig0007116:46954-46973 | Msa1345360:five_prime_UTR | 35.0% |
| GTACTAAGCTCAGAAATTGA+GGG | - | tig0007116:47039-47058 | None:intergenic | 35.0% | |
| AAAATTACTCTAGCCCAGAA+AGG | - | tig0007116:47061-47080 | None:intergenic | 35.0% | |
| TTGTGAATTCATGGTTGTGT+TGG | + | tig0007116:47267-47286 | Msa1345360:intron | 35.0% | |
| ! | TCATGTTTGGGTTTGTGAAT+AGG | + | tig0007116:47382-47401 | Msa1345360:intron | 35.0% |
| ! | CATGTTTGGGTTTGTGAATA+GGG | + | tig0007116:47383-47402 | Msa1345360:intron | 35.0% |
| ! | ATGTTTGGGTTTGTGAATAG+GGG | + | tig0007116:47384-47403 | Msa1345360:intron | 35.0% |
| GGTCATGTTAATGAAACATG+TGG | + | tig0007116:47416-47435 | Msa1345360:exon | 35.0% | |
| TGCAAAGAATTGTATGCTAC+TGG | + | tig0007116:47470-47489 | Msa1345360:CDS | 35.0% | |
| ! | CGGTTTTTGATAAGATCTCT+TGG | + | tig0007116:47519-47538 | Msa1345360:CDS | 35.0% |
| CTTTATGTCTACTTCGATCT+AGG | - | tig0007116:47638-47657 | None:intergenic | 35.0% | |
| CTAGATCGAAGTAGACATAA+AGG | + | tig0007116:47636-47655 | Msa1345360:CDS | 35.0% | |
| CTATGATATGTTAGTAGCGA+CGG | + | tig0007116:47789-47808 | Msa1345360:intron | 35.0% | |
| TCTTAATCATCGTTGCATTG+CGG | - | tig0007116:47885-47904 | None:intergenic | 35.0% | |
| CATTGCAATCGTTGATATTG+CGG | - | tig0007116:47928-47947 | None:intergenic | 35.0% | |
| TACTAATAGGGTAACAGTTG+CGG | - | tig0007116:47956-47975 | None:intergenic | 35.0% | |
| TATGTTAGCACATGTCTCTA+AGG | - | tig0007116:48037-48056 | None:intergenic | 35.0% | |
| TCAGGAAACATAGCTGTTAT+TGG | + | tig0007116:48249-48268 | Msa1345360:intron | 35.0% | |
| GAAACATAGCTGTTATTGGA+GGG | + | tig0007116:48253-48272 | Msa1345360:CDS | 35.0% | |
| !! | AACTATTTTTCCATCCATGC+AGG | + | tig0007116:48401-48420 | Msa1345360:intron | 35.0% |
| !! | ACTATTTTTCCATCCATGCA+GGG | + | tig0007116:48402-48421 | Msa1345360:intron | 35.0% |
| CTATACGATTCTTCCAAAAC+AGG | - | tig0007116:48507-48526 | None:intergenic | 35.0% | |
| ATGAAAGACTAATTTCAGGG+AGG | + | tig0007116:48605-48624 | Msa1345360:intron | 35.0% | |
| AAGTTGGCAAATGGTTAGAA+AGG | + | tig0007116:48664-48683 | Msa1345360:CDS | 35.0% | |
| !! | TCCCAGCTTTATTATACACT+TGG | + | tig0007116:48777-48796 | Msa1345360:intron | 35.0% |
| AACATCCCAATTGTGATAGA+TGG | + | tig0007116:48878-48897 | Msa1345360:CDS | 35.0% | |
| ACATCCCAATTGTGATAGAT+GGG | + | tig0007116:48879-48898 | Msa1345360:CDS | 35.0% | |
| ATACCCCATCTATCACAATT+GGG | - | tig0007116:48886-48905 | None:intergenic | 35.0% | |
| TTACTGTTTCGGCATATTTC+AGG | + | tig0007116:48959-48978 | Msa1345360:intron | 35.0% | |
| !! | AATCACCTTGAACTTGTTAG+TGG | + | tig0007116:49002-49021 | Msa1345360:CDS | 35.0% |
| !!! | TGGATTGCTTTTTGCAGAAT+TGG | + | tig0007116:49640-49659 | Msa1345360:intron | 35.0% |
| !!! | ATTGCTTTTTGCAGAATTGG+TGG | + | tig0007116:49643-49662 | Msa1345360:intron | 35.0% |
| !! | GGTGTTACTATCCTAAGAAA+AGG | + | tig0007116:49664-49683 | Msa1345360:CDS | 35.0% |
| ! | GATCAGATTTCCCTTTTCTT+AGG | - | tig0007116:49678-49697 | None:intergenic | 35.0% |
| AAGTGAAAGATGGAAGAACA+AGG | - | tig0007116:49806-49825 | None:intergenic | 35.0% | |
| TGAGATTTGTCTATGGGATA+GGG | + | tig0007116:50141-50160 | Msa1345360:intron | 35.0% | |
| GTCAAAACAGTTAGCATCTA+TGG | + | tig0007116:50325-50344 | Msa1345360:intron | 35.0% | |
| GTATTTGTGAAATTCCTTCC+AGG | + | tig0007116:50417-50436 | Msa1345360:intron | 35.0% | |
| TACTGCATCATAAAGTTTCC+TGG | - | tig0007116:50438-50457 | None:intergenic | 35.0% | |
| AGTAAGAAACTAACAAGGGA+AGG | - | tig0007116:50563-50582 | None:intergenic | 35.0% | |
| AAGTGCATTCAAGAAACAGT+TGG | + | tig0007116:50591-50610 | Msa1345360:intron | 35.0% | |
| TCATACAATCACTGTCTTTG+TGG | + | tig0007116:50746-50765 | Msa1345360:intron | 35.0% | |
| ! | AGTTTTCACTTATTCCATCC+TGG | + | tig0007116:50892-50911 | Msa1345360:intron | 35.0% |
| GAGCTCAAGTACTAAATGAA+CGG | - | tig0007116:51011-51030 | None:intergenic | 35.0% | |
| !! | ATACAGTGTTGCTGTCTTTT+TGG | + | tig0007116:51205-51224 | Msa1345360:intron | 35.0% |
| GTTAACCTGAGATATGAATC+TGG | - | tig0007116:51263-51282 | None:intergenic | 35.0% | |
| ! | TTCTAAAAATCCAGCAGTGT+TGG | + | tig0007116:51366-51385 | Msa1345360:CDS | 35.0% |
| TCTAAAAATCCAGCAGTGTT+GGG | + | tig0007116:51367-51386 | Msa1345360:CDS | 35.0% | |
| AAGAAAAGATCAACTGTCAC+TGG | + | tig0007116:51445-51464 | Msa1345360:CDS | 35.0% | |
| GTGACATCATTGAATGCTTA+GGG | + | tig0007116:51467-51486 | Msa1345360:CDS | 35.0% | |
| TCATTGAATGCTTAGGGAAA+AGG | + | tig0007116:51473-51492 | Msa1345360:CDS | 35.0% | |
| !! | CAAACAAAGACTTGAGTTGA+TGG | - | tig0007116:51723-51742 | None:intergenic | 35.0% |
| ! | CTCAAGTCTTTGTTTGTTCA+AGG | + | tig0007116:51727-51746 | Msa1345360:three_prime_UTR | 35.0% |
| TATGGTGGTTAAGCAGTGAT+TGG | - | tig0007116:46292-46311 | None:intergenic | 40.0% | |
| TTCTGTGCACACCAATTATC+TGG | - | tig0007116:46421-46440 | None:intergenic | 40.0% | |
| TGACCCATCTTCTGATTTCA+AGG | - | tig0007116:46615-46634 | Msa1345370:CDS | 40.0% | |
| !!! | GTTTTGGGAGCATTAGCTTT+TGG | - | tig0007116:46737-46756 | Msa1345370:CDS | 40.0% |
| ! | AGGTCAGGAATAGTGGTTTT+GGG | - | tig0007116:46752-46771 | Msa1345370:CDS | 40.0% |
| ! | TAGGTCAGGAATAGTGGTTT+TGG | - | tig0007116:46753-46772 | Msa1345370:CDS | 40.0% |
| TGCAATTAGGTCAGGAATAG+TGG | - | tig0007116:46759-46778 | Msa1345370:CDS | 40.0% | |
| !!! | CGTTTTGAGAATCTTCCAGT+TGG | + | tig0007116:46953-46972 | Msa1345360:five_prime_UTR | 40.0% |
| GGTACTAAGCTCAGAAATTG+AGG | - | tig0007116:47040-47059 | None:intergenic | 40.0% | |
| TTCTGAGCTTAGTACCTTTC+TGG | + | tig0007116:47044-47063 | Msa1345360:five_prime_UTR | 40.0% | |
| TCTGAGCTTAGTACCTTTCT+GGG | + | tig0007116:47045-47064 | Msa1345360:five_prime_UTR | 40.0% | |
| TTAGGGGATGCATTCATGTT+TGG | + | tig0007116:47217-47236 | Msa1345360:intron | 40.0% | |
| TAGGGGATGCATTCATGTTT+GGG | + | tig0007116:47218-47237 | Msa1345360:intron | 40.0% | |
| !! | TTGGGGGGTTTGTGTTTTTA+AGG | + | tig0007116:47356-47375 | Msa1345360:intron | 40.0% |
| ! | AACCGATGTCTTCTGAAAAC+AGG | - | tig0007116:47504-47523 | None:intergenic | 40.0% |
| TGGAAAAATGCAGTCTGTTG+AGG | + | tig0007116:47575-47594 | Msa1345360:CDS | 40.0% | |
| AGTAGTCAGTGTTTGAACTC+TGG | + | tig0007116:47972-47991 | Msa1345360:intron | 40.0% | |
| !! | TCTCTAAGGTGTGACTCAAT+TGG | - | tig0007116:48023-48042 | None:intergenic | 40.0% |
| TCAGGGAACTTCTTATCACA+TGG | - | tig0007116:48125-48144 | None:intergenic | 40.0% | |
| GGAAACATAGCTGTTATTGG+AGG | + | tig0007116:48252-48271 | Msa1345360:intron | 40.0% | |
| GCTGAAATAGCAGCAAAGTA+TGG | - | tig0007116:48300-48319 | None:intergenic | 40.0% | |
| TGGAAGAATCGTATAGTGTC+AGG | + | tig0007116:48511-48530 | Msa1345360:CDS | 40.0% | |
| AAAGACTAATTTCAGGGAGG+AGG | + | tig0007116:48608-48627 | Msa1345360:intron | 40.0% | |
| ATCAAGGTTCTTGCTGAAGT+TGG | + | tig0007116:48648-48667 | Msa1345360:CDS | 40.0% | |
| TTCTTGCTGAAGTTGGCAAA+TGG | + | tig0007116:48655-48674 | Msa1345360:CDS | 40.0% | |
| AGGTTTGACTGTCTAGTCAT+TGG | + | tig0007116:48684-48703 | Msa1345360:CDS | 40.0% | |
| GAAGAAATGTGTCTCTTCCA+AGG | - | tig0007116:48716-48735 | None:intergenic | 40.0% | |
| CATCCCAATTGTGATAGATG+GGG | + | tig0007116:48880-48899 | Msa1345360:CDS | 40.0% | |
| CATACCCCATCTATCACAAT+TGG | - | tig0007116:48887-48906 | None:intergenic | 40.0% | |
| TAGATGGGGTATGTATGTCA+AGG | + | tig0007116:48894-48913 | Msa1345360:intron | 40.0% | |
| TGTTTCGGCATATTTCAGGA+TGG | + | tig0007116:48963-48982 | Msa1345360:intron | 40.0% | |
| CATAGCCACTAACAAGTTCA+AGG | - | tig0007116:49010-49029 | None:intergenic | 40.0% | |
| TTACACAAGTTAGGATGCTG+AGG | - | tig0007116:49234-49253 | None:intergenic | 40.0% | |
| !! | ACAATTTTCAAGGGCTAAGC+TGG | + | tig0007116:49394-49413 | Msa1345360:intron | 40.0% |
| AGTGATTTCTCATTACTCCC+TGG | + | tig0007116:49588-49607 | Msa1345360:intron | 40.0% | |
| CTAATAAGCGATGGTGACAA+AGG | + | tig0007116:49697-49716 | Msa1345360:CDS | 40.0% | |
| AACCAGACAAGAAGGAAAAC+CGG | - | tig0007116:49747-49766 | None:intergenic | 40.0% | |
| !!! | TCTGGTTTCTTATTTTGGGC+AGG | + | tig0007116:49760-49779 | Msa1345360:intron | 40.0% |
| !!! | GTTTCTTATTTTGGGCAGGT+GGG | + | tig0007116:49764-49783 | Msa1345360:intron | 40.0% |
| TCTTCCATCTTTCACTTGAC+CGG | + | tig0007116:49809-49828 | Msa1345360:CDS | 40.0% | |
| GATTGGAATCGAAAATGTGC+CGG | - | tig0007116:49831-49850 | None:intergenic | 40.0% | |
| CGGCATGAACATTACTTGAT+TGG | - | tig0007116:49848-49867 | None:intergenic | 40.0% | |
| GACAACTTTAGTATGGCATG+CGG | - | tig0007116:49868-49887 | None:intergenic | 40.0% | |
| TGCCATACTAAAGTTGTCAG+TGG | + | tig0007116:49870-49889 | Msa1345360:intron | 40.0% | |
| ATCTCAGAGAGGACAATTGT+AGG | - | tig0007116:50127-50146 | None:intergenic | 40.0% | |
| !! | TCCTCTCTGAGATTTGTCTA+TGG | + | tig0007116:50134-50153 | Msa1345360:intron | 40.0% |
| !! | CCTCTCTGAGATTTGTCTAT+GGG | + | tig0007116:50135-50154 | Msa1345360:intron | 40.0% |
| CTGAGATTTGTCTATGGGAT+AGG | + | tig0007116:50140-50159 | Msa1345360:intron | 40.0% | |
| GAGATTTGTCTATGGGATAG+GGG | + | tig0007116:50142-50161 | Msa1345360:intron | 40.0% | |
| AAATCACTTGCCTTCCAGAA+AGG | - | tig0007116:50384-50403 | None:intergenic | 40.0% | |
| GCATCATAAAGTTTCCTGGA+AGG | - | tig0007116:50434-50453 | None:intergenic | 40.0% | |
| GCTATCAAAAAATGCCCACA+AGG | - | tig0007116:50848-50867 | None:intergenic | 40.0% | |
| TGGTAATCAAGAGTTCGACA+GGG | - | tig0007116:51076-51095 | None:intergenic | 40.0% | |
| ! | TTGGTAATCAAGAGTTCGAC+AGG | - | tig0007116:51077-51096 | None:intergenic | 40.0% |
| CTCTCAAGAGAAAAGAGCTT+TGG | - | tig0007116:51096-51115 | None:intergenic | 40.0% | |
| !!! | CACTGCTGGATTTTTAGAAC+TGG | - | tig0007116:51365-51384 | None:intergenic | 40.0% |
| GGTGACATCATTGAATGCTT+AGG | + | tig0007116:51466-51485 | Msa1345360:CDS | 40.0% | |
| ! | TTTTTACAGGATCGCGTTCA+TGG | + | tig0007116:51865-51884 | Msa1345360:three_prime_UTR | 40.0% |
| TCTTCGAATTAGGCATGTCC+TGG | - | tig0007116:46236-46255 | None:intergenic | 45.0% | |
| TCTATCTCTTTCCCTGAACG+TGG | - | tig0007116:46590-46609 | Msa1345370:CDS | 45.0% | |
| TCAACAGCAGCAGCAAAATG+AGG | - | tig0007116:46663-46682 | Msa1345370:CDS | 45.0% | |
| ! | TGTGAATAGGGGTTGCTGTT+TGG | + | tig0007116:47395-47414 | Msa1345360:intron | 45.0% |
| ! | CGCCTGTTTTCAGAAGACAT+CGG | + | tig0007116:47499-47518 | Msa1345360:CDS | 45.0% |
| !! | TGTTGAGGTTGATGCTGAGA+GGG | + | tig0007116:47590-47609 | Msa1345360:CDS | 45.0% |
| ! | TGTCTACTTCGATCTAGGAC+AGG | - | tig0007116:47633-47652 | None:intergenic | 45.0% |
| AGTAGACATAAAGGCCAGAC+AGG | + | tig0007116:47645-47664 | Msa1345360:CDS | 45.0% | |
| GCAAGAATTGTGTACCTGTC+TGG | - | tig0007116:47662-47681 | None:intergenic | 45.0% | |
| !! | GGACTGTAGCTTTTGATGAC+AGG | - | tig0007116:48468-48487 | None:intergenic | 45.0% |
| ! | GTTGATTGTGCACCCTGTTT+TGG | + | tig0007116:48491-48510 | Msa1345360:CDS | 45.0% |
| GGGGTATGTATGTCAAGGTT+TGG | + | tig0007116:48899-48918 | Msa1345360:intron | 45.0% | |
| TAGGATGCTGAGGAAACATG+TGG | - | tig0007116:49224-49243 | None:intergenic | 45.0% | |
| GAATGCAGTGGAAGAGAAAC+TGG | - | tig0007116:49297-49316 | None:intergenic | 45.0% | |
| GGACCATGAAAGTCTGTAAG+TGG | + | tig0007116:49460-49479 | Msa1345360:intron | 45.0% | |
| ! | CTGCCACTTACAGACTTTCA+TGG | - | tig0007116:49466-49485 | None:intergenic | 45.0% |
| ACCAGACAAGAAGGAAAACC+GGG | - | tig0007116:49746-49765 | None:intergenic | 45.0% | |
| !!! | GGTTTCTTATTTTGGGCAGG+TGG | + | tig0007116:49763-49782 | Msa1345360:intron | 45.0% |
| GGCCACTGACAACTTTAGTA+TGG | - | tig0007116:49875-49894 | None:intergenic | 45.0% | |
| CCCATAGACAAATCTCAGAG+AGG | - | tig0007116:50138-50157 | None:intergenic | 45.0% | |
| ! | GGGATAGGGGCTTTATGTTA+TGG | + | tig0007116:50155-50174 | Msa1345360:intron | 45.0% |
| ACATTTGGCATGGGGCTTAT+AGG | + | tig0007116:50237-50256 | Msa1345360:intron | 45.0% | |
| CATTTGGCATGGGGCTTATA+GGG | + | tig0007116:50238-50257 | Msa1345360:intron | 45.0% | |
| TTCCAGAAAGGATATCGCCT+TGG | - | tig0007116:50372-50391 | None:intergenic | 45.0% | |
| AAGGCGATATCCTTTCTGGA+AGG | + | tig0007116:50371-50390 | Msa1345360:CDS | 45.0% | |
| !! | CAGTAGACTCGGTGAATTAG+CGG | - | tig0007116:50824-50843 | None:intergenic | 45.0% |
| CCTATTTCGAATAGCCAGGA+TGG | - | tig0007116:50909-50928 | None:intergenic | 45.0% | |
| CCATCCTGGCTATTCGAAAT+AGG | + | tig0007116:50906-50925 | Msa1345360:intron | 45.0% | |
| AGGTCCTATTTCGAATAGCC+AGG | - | tig0007116:50913-50932 | None:intergenic | 45.0% | |
| GAGATATGAATCTGGACCAG+CGG | - | tig0007116:51255-51274 | None:intergenic | 45.0% | |
| CTGGTCCAGATTCATATCTC+AGG | + | tig0007116:51255-51274 | Msa1345360:CDS | 45.0% | |
| CATCATAGCAGAACCAGCAA+TGG | - | tig0007116:51395-51414 | None:intergenic | 45.0% | |
| !! | TTGCTGGTTCTGCTATGATG+AGG | + | tig0007116:51395-51414 | Msa1345360:CDS | 45.0% |
| ! | TGGTTCTGCTATGATGAGGA+AGG | + | tig0007116:51399-51418 | Msa1345360:CDS | 45.0% |
| AGGTCACAAACTGCATGAAC+TGG | - | tig0007116:51604-51623 | None:intergenic | 45.0% | |
| TGTTCAAGGCAACGTTTGTG+TGG | + | tig0007116:51741-51760 | Msa1345360:three_prime_UTR | 45.0% | |
| !! | CTGTTGAGGTTGATGCTGAG+AGG | + | tig0007116:47589-47608 | Msa1345360:CDS | 50.0% |
| AAGGTTCTGCACCTGCGAAT+TGG | + | tig0007116:47829-47848 | Msa1345360:intron | 50.0% | |
| AGGTTCTGCACCTGCGAATT+GGG | + | tig0007116:47830-47849 | Msa1345360:intron | 50.0% | |
| TTGAACTCTGGACCTCCTTC+TGG | + | tig0007116:47984-48003 | Msa1345360:intron | 50.0% | |
| TGAACTGAGACACCAGAAGG+AGG | - | tig0007116:47999-48018 | None:intergenic | 50.0% | |
| GGTTGAACTGAGACACCAGA+AGG | - | tig0007116:48002-48021 | None:intergenic | 50.0% | |
| !! | GGAGGGTGTCGAGAATATAC+AGG | + | tig0007116:48270-48289 | Msa1345360:CDS | 50.0% |
| AAATCTGCACCCTGCATGGA+TGG | - | tig0007116:48414-48433 | None:intergenic | 50.0% | |
| ACAGGGTGCACAATCAACTC+AGG | - | tig0007116:48489-48508 | None:intergenic | 50.0% | |
| GACTGTCTAGTCATTGGTCC+AGG | + | tig0007116:48690-48709 | Msa1345360:CDS | 50.0% | |
| AATGTGTCTCTTCCAAGGCC+TGG | - | tig0007116:48711-48730 | None:intergenic | 50.0% | |
| TGATGTCACTCACACAGTCC+TGG | - | tig0007116:48838-48857 | None:intergenic | 50.0% | |
| AGAGTAAGCACTTGCTCAGC+AGG | - | tig0007116:49116-49135 | None:intergenic | 50.0% | |
| ! | TCCCGGTTTTCCTTCTTGTC+TGG | + | tig0007116:49742-49761 | Msa1345360:intron | 50.0% |
| ! | TGTGCCGGTCAAGTGAAAGA+TGG | - | tig0007116:49816-49835 | None:intergenic | 50.0% |
| TATGGTTCTCCTAGACGCTG+TGG | + | tig0007116:50343-50362 | Msa1345360:CDS | 50.0% | |
| ACCGAGTCTACTGACCTTGT+GGG | + | tig0007116:50831-50850 | Msa1345360:intron | 50.0% | |
| GACCAGCGGCTTCAATATGT+TGG | - | tig0007116:51241-51260 | None:intergenic | 50.0% | |
| CACAAACTGCATGAACTGGC+AGG | - | tig0007116:51600-51619 | None:intergenic | 50.0% | |
| ! | TTTTCCGCAGCCCAATTCGC+AGG | - | tig0007116:47843-47862 | None:intergenic | 55.0% |
| GGACAAATCTGCACCCTGCA+TGG | - | tig0007116:48418-48437 | None:intergenic | 55.0% | |
| CTAGTCATTGGTCCAGGCCT+TGG | + | tig0007116:48696-48715 | Msa1345360:CDS | 55.0% | |
| GGCCAAGGCGATATCCTTTC+TGG | + | tig0007116:50367-50386 | Msa1345360:CDS | 55.0% | |
| CACCGAGTCTACTGACCTTG+TGG | + | tig0007116:50830-50849 | Msa1345360:intron | 55.0% | |
| GCCCACAAGGTCAGTAGACT+CGG | - | tig0007116:50835-50854 | None:intergenic | 55.0% | |
| CGCCAACATATTGAAGCCGC+TGG | + | tig0007116:51236-51255 | Msa1345360:CDS | 55.0% | |
| GCAATGGATCCCAACACTGC+TGG | - | tig0007116:51379-51398 | None:intergenic | 55.0% | |
| ! | GCAGTGTTGGGATCCATTGC+TGG | + | tig0007116:51379-51398 | Msa1345360:CDS | 55.0% |
| GACGTGCACGTGTTCCCAAC+TGG | - | tig0007116:46971-46990 | None:intergenic | 60.0% | |
| TGCACCTGCGAATTGGGCTG+CGG | + | tig0007116:47836-47855 | Msa1345360:intron | 60.0% | |
| GGTTCTCCTAGACGCTGTGG+TGG | + | tig0007116:50346-50365 | Msa1345360:CDS | 60.0% | |
| CCTTGGCCACCACAGCGTCT+AGG | - | tig0007116:50355-50374 | None:intergenic | 65.0% | |
| CCTAGACGCTGTGGTGGCCA+AGG | + | tig0007116:50352-50371 | Msa1345360:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0007116 | gene | 46233 | 51903 | 46233 | ID=Msa1345360;Name=Msa1345360 |
| tig0007116 | mRNA | 46233 | 51903 | 46233 | ID=Msa1345360-mRNA-1;Parent=Msa1345360;Name=Msa1345360-mRNA-1;_AED=0.10;_eAED=0.11;_QI=874|0.75|0.84|0.92|0.91|0.84|13|283|404 |
| tig0007116 | exon | 46233 | 47090 | 46233 | ID=Msa1345360-mRNA-1:exon:4920;Parent=Msa1345360-mRNA-1 |
| tig0007116 | exon | 47404 | 47666 | 47404 | ID=Msa1345360-mRNA-1:exon:4921;Parent=Msa1345360-mRNA-1 |
| tig0007116 | exon | 48253 | 48329 | 48253 | ID=Msa1345360-mRNA-1:exon:4922;Parent=Msa1345360-mRNA-1 |
| tig0007116 | exon | 48423 | 48532 | 48423 | ID=Msa1345360-mRNA-1:exon:4923;Parent=Msa1345360-mRNA-1 |
| tig0007116 | exon | 48623 | 48737 | 48623 | ID=Msa1345360-mRNA-1:exon:4924;Parent=Msa1345360-mRNA-1 |
| tig0007116 | exon | 48839 | 48901 | 48839 | ID=Msa1345360-mRNA-1:exon:4925;Parent=Msa1345360-mRNA-1 |
| tig0007116 | exon | 48981 | 49144 | 48981 | ID=Msa1345360-mRNA-1:exon:4926;Parent=Msa1345360-mRNA-1 |
| tig0007116 | exon | 49657 | 49718 | 49657 | ID=Msa1345360-mRNA-1:exon:4927;Parent=Msa1345360-mRNA-1 |
| tig0007116 | exon | 49782 | 49852 | 49782 | ID=Msa1345360-mRNA-1:exon:4928;Parent=Msa1345360-mRNA-1 |
| tig0007116 | exon | 50326 | 50396 | 50326 | ID=Msa1345360-mRNA-1:exon:4929;Parent=Msa1345360-mRNA-1 |
| tig0007116 | exon | 51211 | 51276 | 51211 | ID=Msa1345360-mRNA-1:exon:4930;Parent=Msa1345360-mRNA-1 |
| tig0007116 | exon | 51366 | 51494 | 51366 | ID=Msa1345360-mRNA-1:exon:4931;Parent=Msa1345360-mRNA-1 |
| tig0007116 | exon | 51581 | 51903 | 51581 | ID=Msa1345360-mRNA-1:exon:4932;Parent=Msa1345360-mRNA-1 |
| tig0007116 | five_prime_UTR | 46233 | 47090 | 46233 | ID=Msa1345360-mRNA-1:five_prime_utr;Parent=Msa1345360-mRNA-1 |
| tig0007116 | five_prime_UTR | 47404 | 47419 | 47404 | ID=Msa1345360-mRNA-1:five_prime_utr;Parent=Msa1345360-mRNA-1 |
| tig0007116 | CDS | 47420 | 47666 | 47420 | ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1 |
| tig0007116 | CDS | 48253 | 48329 | 48253 | ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1 |
| tig0007116 | CDS | 48423 | 48532 | 48423 | ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1 |
| tig0007116 | CDS | 48623 | 48737 | 48623 | ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1 |
| tig0007116 | CDS | 48839 | 48901 | 48839 | ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1 |
| tig0007116 | CDS | 48981 | 49144 | 48981 | ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1 |
| tig0007116 | CDS | 49657 | 49718 | 49657 | ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1 |
| tig0007116 | CDS | 49782 | 49852 | 49782 | ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1 |
| tig0007116 | CDS | 50326 | 50396 | 50326 | ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1 |
| tig0007116 | CDS | 51211 | 51276 | 51211 | ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1 |
| tig0007116 | CDS | 51366 | 51494 | 51366 | ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1 |
| tig0007116 | CDS | 51581 | 51620 | 51581 | ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1 |
| tig0007116 | three_prime_UTR | 51621 | 51903 | 51621 | ID=Msa1345360-mRNA-1:three_prime_utr;Parent=Msa1345360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
