AlfalfaGEDB | Msa1345360

M. sativa cultivar zhongmu-4 / Msa1345360

KEGG: K17757
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0016835 GO:0016836 GO:0016853 GO:0016854 GO:0019362 GO:0019637 GO:0019674 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0047453 GO:0051186 GO:0052856 GO:0052857 GO:0055086 GO:0071704 GO:0072524 GO:1901360 GO:1901564
PFAM: PF01256.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1345360	XP_039686258.1	86.139	404	31	2	1	404	1	379	0.0	684

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1345360	sp\|F6HDM2\|NNRD_VITVI	68.602	379	91	4	23	399	1	353	1.37e-176	499

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1345360	A0A072VF60	86.139	404	31	2	1	404	1	379	0.0	684

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003700	Msa1345360	0.817635	2.977893e-52	-8.615850e-47
Msa0004920	Msa1345360	0.804123	2.512511e-49	-8.615850e-47
Msa0008410	Msa1345360	0.800929	1.144373e-48	-8.615850e-47
Msa0021810	Msa1345360	0.807626	4.611319e-50	-8.615850e-47
Msa0032840	Msa1345360	-0.812264	4.626766e-51	-8.615850e-47
Msa0040450	Msa1345360	0.828272	9.861202e-55	-8.615850e-47
Msa0046100	Msa1345360	0.827909	1.205522e-54	-8.615850e-47
Msa0053780	Msa1345360	0.802024	6.826110e-49	-8.615850e-47
Msa0064350	Msa1345360	0.814584	1.430121e-51	-8.615850e-47
Msa0069330	Msa1345360	0.810421	1.162322e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1345360	MtrunA17_Chr2g0287881	86.139	404	31	2	1	404	1	379	0.0	684

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1345360	AT5G19150.2	62.500	376	102	7	29	400	25	365	2.13e-153	438
Msa1345360	AT5G19150.1	62.500	376	102	7	29	400	25	365	2.13e-153	438

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Find 115 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTACTCTAGCCCAGAA+AGG	0.570694	tig0007116:-47058	None:intergenic
AAAGACTAATTTCAGGGAGG+AGG	0.546606	tig0007116:+48608	Msa1345360:intron
AAATCACTTGCCTTCCAGAA+AGG	0.533730	tig0007116:-50381	None:intergenic
AAATCTGATCTAATAAGCGA+TGG	0.625347	tig0007116:+49688	Msa1345360:CDS
AACATCCCAATTGTGATAGA+TGG	0.346293	tig0007116:+48878	Msa1345360:CDS
AACCGATGTCTTCTGAAAAC+AGG	0.444182	tig0007116:-47501	None:intergenic
AAGAAAAGATCAACTGTCAC+TGG	0.520063	tig0007116:+51445	Msa1345360:CDS
AAGATGAATGCAATTAGGTC+AGG	0.497334	tig0007116:-46764	Msa1345370:CDS
AAGGCGATATCCTTTCTGGA+AGG	0.654435	tig0007116:+50371	Msa1345360:CDS
AAGTGAAAGATGGAAGAACA+AGG	0.652463	tig0007116:-49803	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGGTCTGTCATAATGTAT+GGG	-	tig0007116:46348-46367	None:intergenic	30.0%
TCTGTTGATATCAGTTTCAA+TGG	-	tig0007116:46383-46402	None:intergenic	30.0%
ATTCCTTGAAATCAGAAGAT+GGG	+	tig0007116:46609-46628	Msa1345360:five_prime_UTR	30.0%
TTCTTTGCACAATACAACAA+GGG	-	tig0007116:47459-47478	None:intergenic	30.0%
ATTCTTTGCACAATACAACA+AGG	-	tig0007116:47460-47479	None:intergenic	30.0%
CATCATACCAATTATAGTTC+TGG	+	tig0007116:47555-47574	Msa1345360:CDS	30.0%
GTTTAGAAAACAAAAAGGCA+AGG	-	tig0007116:48098-48117	None:intergenic	30.0%
AGGCATATTTGCAATAATCA+GGG	-	tig0007116:48142-48161	None:intergenic	30.0%
TAGGCATATTTGCAATAATC+AGG	-	tig0007116:48143-48162	None:intergenic	30.0%
TATACGATTCTTCCAAAACA+GGG	-	tig0007116:48506-48525	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0007116	gene	46233	51903	46233	ID=Msa1345360;Name=Msa1345360
tig0007116	mRNA	46233	51903	46233	ID=Msa1345360-mRNA-1;Parent=Msa1345360;Name=Msa1345360-mRNA-1;_AED=0.10;_eAED=0.11;_QI=874\|0.75\|0.84\|0.92\|0.91\|0.84\|13\|283\|404
tig0007116	exon	46233	47090	46233	ID=Msa1345360-mRNA-1:exon:4920;Parent=Msa1345360-mRNA-1
tig0007116	exon	47404	47666	47404	ID=Msa1345360-mRNA-1:exon:4921;Parent=Msa1345360-mRNA-1
tig0007116	exon	48253	48329	48253	ID=Msa1345360-mRNA-1:exon:4922;Parent=Msa1345360-mRNA-1
tig0007116	exon	48423	48532	48423	ID=Msa1345360-mRNA-1:exon:4923;Parent=Msa1345360-mRNA-1
tig0007116	exon	48623	48737	48623	ID=Msa1345360-mRNA-1:exon:4924;Parent=Msa1345360-mRNA-1
tig0007116	exon	48839	48901	48839	ID=Msa1345360-mRNA-1:exon:4925;Parent=Msa1345360-mRNA-1
tig0007116	exon	48981	49144	48981	ID=Msa1345360-mRNA-1:exon:4926;Parent=Msa1345360-mRNA-1
tig0007116	exon	49657	49718	49657	ID=Msa1345360-mRNA-1:exon:4927;Parent=Msa1345360-mRNA-1
tig0007116	exon	49782	49852	49782	ID=Msa1345360-mRNA-1:exon:4928;Parent=Msa1345360-mRNA-1
tig0007116	exon	50326	50396	50326	ID=Msa1345360-mRNA-1:exon:4929;Parent=Msa1345360-mRNA-1
tig0007116	exon	51211	51276	51211	ID=Msa1345360-mRNA-1:exon:4930;Parent=Msa1345360-mRNA-1
tig0007116	exon	51366	51494	51366	ID=Msa1345360-mRNA-1:exon:4931;Parent=Msa1345360-mRNA-1
tig0007116	exon	51581	51903	51581	ID=Msa1345360-mRNA-1:exon:4932;Parent=Msa1345360-mRNA-1
tig0007116	five_prime_UTR	46233	47090	46233	ID=Msa1345360-mRNA-1:five_prime_utr;Parent=Msa1345360-mRNA-1
tig0007116	five_prime_UTR	47404	47419	47404	ID=Msa1345360-mRNA-1:five_prime_utr;Parent=Msa1345360-mRNA-1
tig0007116	CDS	47420	47666	47420	ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1
tig0007116	CDS	48253	48329	48253	ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1
tig0007116	CDS	48423	48532	48423	ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1
tig0007116	CDS	48623	48737	48623	ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1
tig0007116	CDS	48839	48901	48839	ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1
tig0007116	CDS	48981	49144	48981	ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1
tig0007116	CDS	49657	49718	49657	ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1
tig0007116	CDS	49782	49852	49782	ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1
tig0007116	CDS	50326	50396	50326	ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1
tig0007116	CDS	51211	51276	51211	ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1
tig0007116	CDS	51366	51494	51366	ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1
tig0007116	CDS	51581	51620	51581	ID=Msa1345360-mRNA-1:cds;Parent=Msa1345360-mRNA-1
tig0007116	three_prime_UTR	51621	51903	51621	ID=Msa1345360-mRNA-1:three_prime_utr;Parent=Msa1345360-mRNA-1

Gene Sequence

>Msa1345360

ATGTTAATGAAACATGTGGTCATGAATTCTCAGTTACCCTTGTTGTATTGTGCAAAGAATTGTATGCTACTGGCTTCTTCGCCTGTTTTCAGAAGACATCGGTTTTTGATAAGATCTCTTGGATGTAGCATTGATCATCATACCAATTATAGTTCTGGAAAAATGCAGTCTGTTGAGGTTGATGCTGAGAGGGTTATTAGAGAAATTACTCCTGTCCTAGATCGAAGTAGACATAAAGGCCAGACAGGAAACATAGCTGTTATTGGAGGGTGTCGAGAATATACAGGTGCACCATACTTTGCTGCTATTTCAGCCTTAAAAATTGGTGCAGATTTGTCCCATGTATTCTGTACAAAAGATGCTGCTCCTGTCATCAAAAGCTACAGTCCTGAGTTGATTGTGCACCCTGTTTTGGAAGAATCGTATAGTGTCAGGGAGGAGGACAAGAAAAACATATCAATCAAGGTTCTTGCTGAAGTTGGCAAATGGTTAGAAAGGTTTGACTGTCTAGTCATTGGTCCAGGCCTTGGAAGAGACACATTTCTTCTAGACTGTGTGAGTGACATCATAAGACATGCAAGAAAGTCAAACATCCCAATTGTGATAGATGGGGATGGACTTTTTCTTGTTACAAATCACCTTGAACTTGTTAGTGGCTATGCATTAGCTGTTCTAACCCCAAATGTCAATGAATATAAGCGACTTGTACAGAAAGTACTGAGTTCTGAAGTAAATAACGAAGATCCTGCTGAGCAAGTGCTTACTCTTTCCAAACAAATTGGTGGTGTTACTATCCTAAGAAAAGGGAAATCTGATCTAATAAGCGATGGTGACAAAGGTGGGATAATGAATGTCATTTCCTTGTTCTTCCATCTTTCACTTGACCGGCACATTTTCGATTCCAATCAATCAAAACAGTTAGCATCTATGGTTCTCCTAGACGCTGTGGTGGCCAAGGCGATATCCTTTCTGGAAGGCAATGTTGCTGTCTTTTTGGCGTGGGCACGCCAACATATTGAAGCCGCTGGTCCAGATTCATATCTCAGTTCTAAAAATCCAGCAGTGTTGGGATCCATTGCTGGTTCTGCTATGATGAGGAAGGCAGCTTCCCTTGCTTTCTCAAATAAGAAAAGATCAACTGTCACTGGTGACATCATTGAATGCTTAGGGAAAAGTTTGGAAGATATTTGTCCTGCCAGTTCATGCAGTTTGTGA

Protein sequence

>Msa1345360

MLMKHVVMNSQLPLLYCAKNCMLLASSPVFRRHRFLIRSLGCSIDHHTNYSSGKMQSVEVDAERVIREITPVLDRSRHKGQTGNIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPVLEESYSVREEDKKNISIKVLAEVGKWLERFDCLVIGPGLGRDTFLLDCVSDIIRHARKSNIPIVIDGDGLFLVTNHLELVSGYALAVLTPNVNEYKRLVQKVLSSEVNNEDPAEQVLTLSKQIGGVTILRKGKSDLISDGDKGGIMNVISLFFHLSLDRHIFDSNQSKQLASMVLLDAVVAKAISFLEGNVAVFLAWARQHIEAAGPDSYLSSKNPAVLGSIAGSAMMRKAASLAFSNKKRSTVTGDIIECLGKSLEDICPASSCSL*