AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0084870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0084870 MtrunA17_Chr1g0199671 99.094 331 3 0 1 331 1 331 0.0 675
Msa0084870 MtrunA17_Chr1g0213161 55.814 258 78 10 74 329 10 233 2.75e-74 229
Msa0084870 MtrunA17_Chr2g0326771 46.774 186 70 6 121 306 124 280 4.00e-43 150
Msa0084870 MtrunA17_Chr1g0146231 34.783 322 133 11 9 306 30 298 3.66e-38 139
Msa0084870 MtrunA17_Chr3g0140331 34.228 298 134 8 17 306 74 317 1.56e-36 135
Msa0084870 MtrunA17_Chr4g0028961 64.894 94 28 1 238 331 228 316 8.70e-36 132
Msa0084870 MtrunA17_Chr7g0253101 35.938 256 129 6 58 306 25 252 3.00e-35 129
Msa0084870 MtrunA17_Chr4g0035891 57.692 104 33 2 203 306 183 275 1.42e-34 128
Msa0084870 MtrunA17_Chr6g0461591 36.015 261 122 9 67 308 24 258 1.56e-34 127
Msa0084870 MtrunA17_Chr5g0404981 35.766 274 121 10 48 308 135 366 7.53e-34 128
Msa0084870 MtrunA17_Chr3g0145121 72.603 73 19 1 234 306 208 279 3.85e-33 124
Msa0084870 MtrunA17_Chr8g0340401 81.538 65 12 0 242 306 226 290 7.35e-33 124
Msa0084870 MtrunA17_Chr8g0372291 62.366 93 26 3 216 308 201 284 1.53e-31 119
Msa0084870 MtrunA17_Chr1g0169431 80.000 65 13 0 242 306 172 236 1.66e-31 118
Msa0084870 MtrunA17_Chr5g0395391 55.238 105 45 2 203 306 231 334 2.20e-31 120
Msa0084870 MtrunA17_Chr5g0395391 54.000 100 44 2 207 305 133 231 2.67e-28 112
Msa0084870 MtrunA17_Chr7g0232671 61.290 62 24 0 242 303 187 248 1.09e-20 89.7
Msa0084870 MtrunA17_Chr7g0232701 58.065 62 26 0 242 303 73 134 1.88e-19 83.2
Msa0084870 MtrunA17_Chr7g0232681 36.567 134 65 2 175 303 75 193 6.17e-19 83.6
Msa0084870 MtrunA17_Chr7g0267351 55.844 77 33 1 177 253 36 111 5.69e-17 75.9
Msa0084870 MtrunA17_Chr5g0404131 52.083 48 23 0 227 274 177 224 1.66e-11 64.3
Msa0084870 MtrunA17_Chr7g0271861 67.647 34 11 0 244 277 24 57 9.23e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0084870 AT1G08010.2 40.254 236 111 5 85 318 89 296 2.97e-42 149
Msa0084870 AT1G08010.1 40.254 236 111 5 85 318 89 296 2.97e-42 149
Msa0084870 AT1G08010.3 40.254 236 111 5 85 318 89 296 2.97e-42 149
Msa0084870 AT3G54810.1 71.875 96 20 2 240 328 227 322 3.17e-42 149
Msa0084870 AT3G54810.2 71.875 96 20 2 240 328 227 322 3.17e-42 149
Msa0084870 AT5G25830.1 40.249 241 113 8 67 306 73 283 7.02e-38 138
Msa0084870 AT1G08000.2 42.051 195 88 3 115 309 116 285 3.09e-37 135
Msa0084870 AT1G08000.1 42.051 195 88 3 115 309 116 285 3.09e-37 135
Msa0084870 AT4G32890.1 34.641 306 120 12 17 306 20 261 7.68e-37 134
Msa0084870 AT5G66320.2 38.636 264 123 9 55 315 95 322 2.57e-36 134
Msa0084870 AT5G66320.1 38.636 264 123 9 55 315 95 322 2.57e-36 134
Msa0084870 AT3G24050.1 78.462 65 14 0 242 306 194 258 1.06e-31 120
Msa0084870 AT3G51080.1 71.053 76 21 1 242 317 221 295 1.12e-31 121
Msa0084870 AT4G36240.1 54.545 99 43 1 208 306 132 228 3.15e-31 118
Msa0084870 AT3G60530.1 74.242 66 17 0 241 306 157 222 1.00e-30 116
Msa0084870 AT2G28340.1 65.333 75 26 0 244 318 193 267 1.33e-30 117
Msa0084870 AT2G45050.1 72.727 66 18 0 241 306 178 243 3.28e-30 115
Msa0084870 AT4G34680.1 63.158 76 28 0 242 317 180 255 5.89e-29 112
Msa0084870 AT4G34680.2 63.158 76 28 0 242 317 180 255 5.89e-29 112
Msa0084870 AT3G45170.1 40.000 140 79 3 168 306 44 179 4.78e-28 108
Msa0084870 AT5G26930.1 54.545 44 18 1 234 277 20 61 4.93e-11 59.7

Find 129 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCGGTGAAATTGAAATTA+AGG 0.170554 1_2:-64558202 None:intergenic
CTAGCAGCAGGCCGGTATTC+GGG 0.281895 1_2:-64561658 None:intergenic
ACAACTCGTTGGCGAGTATC+TGG 0.294745 1_2:+64559415 Msa0084870:CDS
AAATGAATCGTCCACAATAT+TGG 0.301923 1_2:-64561065 None:intergenic
GTTCGAAGATCTTCTTTCAT+TGG 0.321117 1_2:+64561033 Msa0084870:intron
CTGCTTTCAAGGACAGAAAT+AGG 0.322926 1_2:-64561184 None:intergenic
TTGACTTGCAGAGAAGAAAA+TGG 0.332195 1_2:+64559278 Msa0084870:intron
AATAAACTAAGCTTAGTTTC+AGG 0.334903 1_2:+64558224 Msa0084870:five_prime_UTR
GTCTCTCCAGAAGAGAGCTT+TGG 0.342561 1_2:-64561442 None:intergenic
CAATGCATGCATTTCCTAAC+AGG 0.350621 1_2:-64561538 None:intergenic
ACAGAAGGAAAGGGAAGAAA+AGG 0.361946 1_2:+64561957 Msa0084870:three_prime_UTR
CGTCCGCAAGGCACCGGAAT+GGG 0.362306 1_2:-64561247 None:intergenic
ACTAGCAGCAGGCCGGTATT+CGG 0.363594 1_2:-64561659 None:intergenic
TCTCTACTCACCGGATCAAC+GGG 0.368770 1_2:-64559498 None:intergenic
GAAGAAAAGGGTAGGATCTT+AGG 0.378964 1_2:+64561970 Msa0084870:three_prime_UTR
GGCTGTGGGGCGTGGACGCT+TGG 0.384746 1_2:-64561278 None:intergenic
AAGGCGAGAACATTGGTGTT+TGG 0.385415 1_2:-64561778 None:intergenic
TATCCTTGCATCTCATTTCA+AGG 0.385918 1_2:-64561726 None:intergenic
CAATGGAGGGCAGGTCCAAT+GGG 0.390212 1_2:+64561580 Msa0084870:CDS
AGCAGGAACTACTGCTTTCA+AGG 0.398558 1_2:-64561195 None:intergenic
GCACTCCAATTCGCACAAAA+AGG 0.399415 1_2:+64561702 Msa0084870:CDS
ACAATGGAGGGCAGGTCCAA+TGG 0.404651 1_2:+64561579 Msa0084870:CDS
CCTTGGAATACAACATTTGA+AGG 0.412271 1_2:+64561797 Msa0084870:CDS
TTGGTTTCTTGACAATAATC+CGG 0.416836 1_2:-64561423 None:intergenic
GGGTTGAAGGCTGTGGGGCG+TGG 0.418136 1_2:-64561286 None:intergenic
AACTAAGCTTAGTTTATTTG+CGG 0.419599 1_2:-64558219 None:intergenic
TGCCCTCCATTGTGGAGTCT+TGG 0.422561 1_2:-64561569 None:intergenic
AAGAAACCAAAGCTCTCTTC+TGG 0.429167 1_2:+64561436 Msa0084870:CDS
TGAGAAGAGAATGGTAGAAA+AGG 0.440839 1_2:-64558170 None:intergenic
CCCTACTTCCTCTTCTGTTG+AGG 0.447338 1_2:+64561333 Msa0084870:CDS
TTCTGTTCGCCACTGTCAGC+TGG 0.447903 1_2:-64561505 None:intergenic
AGAATGGTTCACTACCTGTT+AGG 0.449879 1_2:+64561524 Msa0084870:CDS
GCTGTCAGCAAGGAGGACTC+TGG 0.452116 1_2:+64561136 Msa0084870:CDS
ATCTGAAGAAAGCGCCTTGG+TGG 0.456913 1_2:-64561380 None:intergenic
TGCGAATTGGAGTGCACAGC+TGG 0.458877 1_2:-64561694 None:intergenic
TTGTTTCATTTCAATCACTC+TGG 0.458923 1_2:+64562149 Msa0084870:three_prime_UTR
AGGGCTGGAATGGGGAGAAT+AGG 0.459690 1_2:+64561925 Msa0084870:three_prime_UTR
ATTAATAGAACAGAAGGAAA+GGG 0.461623 1_2:+64561948 Msa0084870:three_prime_UTR
GGCGGAGCTCCCCGTTGATC+CGG 0.465097 1_2:+64559488 Msa0084870:CDS
TGGTTTCTTGACAATAATCC+GGG 0.466726 1_2:-64561422 None:intergenic
TGAAGGGAACTGAGCCTAGT+TGG 0.467108 1_2:+64561814 Msa0084870:exon
CAGAAGGAAAGGGAAGAAAA+GGG 0.470054 1_2:+64561958 Msa0084870:three_prime_UTR
TGCTCTGGTGGAAAGACCAC+AGG 0.471537 1_2:+64561214 Msa0084870:CDS
TGCGGTGTACGCTACAAGTC+GGG 0.473402 1_2:+64561625 Msa0084870:CDS
GCGGTGTCAACGTCGTCGAC+GGG 0.476293 1_2:-64559360 None:intergenic
CCTTCAAATGTTGTATTCCA+AGG 0.482354 1_2:-64561797 None:intergenic
AGCGGTGTCAACGTCGTCGA+CGG 0.482359 1_2:-64559361 None:intergenic
GTTGTAGTTTGCCGCGGAGG+AGG 0.484221 1_2:-64559397 None:intergenic
GCCGACTATTCCCCGAATAC+CGG 0.484840 1_2:+64561647 Msa0084870:CDS
CTCTCTACTCACCGGATCAA+CGG 0.485631 1_2:-64559499 None:intergenic
AGATCTTCTTTCATTGGAGT+GGG 0.485791 1_2:+64561039 Msa0084870:CDS
AAGATCTTCTTTCATTGGAG+TGG 0.486353 1_2:+64561038 Msa0084870:CDS
CCTCAACAGAAGAGGAAGTA+GGG 0.487341 1_2:-64561333 None:intergenic
AATAGGATTAATAGAACAGA+AGG 0.488681 1_2:+64561942 Msa0084870:three_prime_UTR
AGAACGAGGGTTGAAGGCTG+TGG 0.494477 1_2:-64561293 None:intergenic
AAACACCAATGTTCTCGCCT+TGG 0.495323 1_2:+64561780 Msa0084870:CDS
CATAGCAGAACGAGGGTTGA+AGG 0.496157 1_2:-64561299 None:intergenic
CGTGCACGTCCGCAAGGCAC+CGG 0.497396 1_2:-64561253 None:intergenic
AGGGATTTACGTCCCCATTC+CGG 0.508516 1_2:+64561234 Msa0084870:CDS
GCCTTGGTGGAGATAACATT+AGG 0.511767 1_2:-64561367 None:intergenic
GAAAGCAGTAGTTCCTGCTC+TGG 0.513297 1_2:+64561199 Msa0084870:CDS
TGTGGTCTTTCCACCAGAGC+AGG 0.513350 1_2:-64561212 None:intergenic
GATTAATAGAACAGAAGGAA+AGG 0.514944 1_2:+64561947 Msa0084870:three_prime_UTR
GAACGAGGGTTGAAGGCTGT+GGG 0.515671 1_2:-64561292 None:intergenic
TTTAGATCACTTAGGTCGGT+AGG 0.519782 1_2:+64562002 Msa0084870:three_prime_UTR
AAAGAGTAGTGAGAAGAGAA+TGG 0.524359 1_2:-64558179 None:intergenic
ATTGGACCTGCCCTCCATTG+TGG 0.524395 1_2:-64561577 None:intergenic
GGAGGGCAATGAAGCGGCAG+CGG 0.526729 1_2:-64559379 None:intergenic
GCCGGTATTCGGGGAATAGT+CGG 0.526797 1_2:-64561648 None:intergenic
CGCGGAGGAGGGCAATGAAG+CGG 0.533925 1_2:-64559385 None:intergenic
TCAAGGACAGAAATAGGACT+TGG 0.539012 1_2:-64561178 None:intergenic
CTTGCAGAGAAGAAAATGGC+TGG 0.540090 1_2:+64559282 Msa0084870:intron
GTCCGCAAGGCACCGGAATG+GGG 0.540180 1_2:-64561246 None:intergenic
TTGCTGACAGCTGATGATGA+TGG 0.540546 1_2:-64561124 None:intergenic
CTGTCAGCAAGGAGGACTCT+GGG 0.542617 1_2:+64561137 Msa0084870:CDS
AGCAGTAGTTCCTGCTCTGG+TGG 0.543729 1_2:+64561202 Msa0084870:CDS
TTGTAGTTTGCCGCGGAGGA+GGG 0.553031 1_2:-64559396 None:intergenic
CAATAGTACTTCAGACCTCT+CGG 0.555740 1_2:+64559467 Msa0084870:CDS
TTGGTGCGTGCACGTCCGCA+AGG 0.556777 1_2:-64561259 None:intergenic
TAGCAGCAGGCCGGTATTCG+GGG 0.557503 1_2:-64561657 None:intergenic
CATGTTCTCCTCAACAGAAG+AGG 0.558411 1_2:-64561341 None:intergenic
ACGTCCGCAAGGCACCGGAA+TGG 0.559647 1_2:-64561248 None:intergenic
TTTATAATATCCATATCCAT+GGG 0.561480 1_2:+64562053 Msa0084870:three_prime_UTR
AAAATCTGAAGAAAGCGCCT+TGG 0.566825 1_2:-64561383 None:intergenic
CGAGTTGTAGTTTGCCGCGG+AGG 0.567794 1_2:-64559400 None:intergenic
TCAGCTGGAGCAGTAGGAAG+TGG 0.567950 1_2:-64561490 None:intergenic
CCACTGTCAGCTGGAGCAGT+AGG 0.567950 1_2:-64561496 None:intergenic
GGAGAGTCTCACAATGAAAG+TGG 0.570456 1_2:+64561093 Msa0084870:CDS
ATACGACGCGACTCTAGATA+AGG 0.574384 1_2:-64561854 None:intergenic
AACACCGAGTCAGACTCATT+CGG 0.575075 1_2:-64559438 None:intergenic
TCCTCAACAGAAGAGGAAGT+AGG 0.578279 1_2:-64561334 None:intergenic
CGCGGCAAACTACAACTCGT+TGG 0.579753 1_2:+64559404 Msa0084870:CDS
AACCAAGACTCCACAATGGA+GGG 0.579995 1_2:+64561567 Msa0084870:CDS
AAGACTCCACAATGGAGGGC+AGG 0.580027 1_2:+64561571 Msa0084870:CDS
CAAAACGTTGGACTAGCAGC+AGG 0.583276 1_2:-64561670 None:intergenic
GTCCCCATTCCGGTGCCTTG+CGG 0.585255 1_2:+64561244 Msa0084870:CDS
GCTGACAGTGGCGAACAGAA+TGG 0.590330 1_2:+64561508 Msa0084870:CDS
TTGCGGTGTACGCTACAAGT+CGG 0.591752 1_2:+64561624 Msa0084870:CDS
GTATTCCAAGGCGAGAACAT+TGG 0.594504 1_2:-64561785 None:intergenic
AAAACACTCTGCAATGCTTG+CGG 0.597816 1_2:+64561607 Msa0084870:CDS
CTGGCCGAATGAGTCTGACT+CGG 0.600304 1_2:+64559434 Msa0084870:CDS
ATCATCATCAGCTGTCAGCA+AGG 0.601103 1_2:+64561126 Msa0084870:CDS
CTTGGAATACAACATTTGAA+GGG 0.601413 1_2:+64561798 Msa0084870:exon
CGCTTCATTGCCCTCCTCCG+CGG 0.601691 1_2:+64559386 Msa0084870:CDS
CAACGAGTTGTAGTTTGCCG+CGG 0.602863 1_2:-64559403 None:intergenic
TGCACAGCTGGACAAAACGT+TGG 0.609672 1_2:-64561682 None:intergenic
GGAGAGAGAAATCTCCAACT+AGG 0.610583 1_2:-64561828 None:intergenic
GGTCCTTGAAATGAGATGCA+AGG 0.611789 1_2:+64561723 Msa0084870:CDS
AGGAAAGGGAAGAAAAGGGT+AGG 0.615212 1_2:+64561962 Msa0084870:three_prime_UTR
ACGTTGGACTAGCAGCAGGC+CGG 0.619617 1_2:-64561666 None:intergenic
CTCAACAGAAGAGGAAGTAG+GGG 0.627104 1_2:-64561332 None:intergenic
TAACCAAGACTCCACAATGG+AGG 0.629519 1_2:+64561566 Msa0084870:CDS
CGGTGTCAACGTCGTCGACG+GGG 0.629631 1_2:-64559359 None:intergenic
GCCTAATGTTATCTCCACCA+AGG 0.643801 1_2:+64561366 Msa0084870:CDS
TAATTTACTCAAATTCAACA+AGG 0.648312 1_2:+64558502 Msa0084870:five_prime_UTR
GCTCTGGTGGAAAGACCACA+GGG 0.652323 1_2:+64561215 Msa0084870:CDS
ATGAGTTGCATAGCAGAACG+AGG 0.660947 1_2:-64561307 None:intergenic
AACGAGGGTTGAAGGCTGTG+GGG 0.663882 1_2:-64561291 None:intergenic
ACGCGACTCTAGATAAGGCG+AGG 0.670462 1_2:-64561849 None:intergenic
AATGGAGGGCAGGTCCAATG+GGG 0.678887 1_2:+64561581 Msa0084870:CDS
CAACGGGGAGCTCCGCCGAG+AGG 0.679446 1_2:-64559482 None:intergenic
CCTACTGCTCCAGCTGACAG+TGG 0.685510 1_2:+64561496 Msa0084870:CDS
ATCATCAGCTGTCAGCAAGG+AGG 0.691864 1_2:+64561129 Msa0084870:CDS
GGAGTGGGTGTCCAATATTG+TGG 0.693703 1_2:+64561054 Msa0084870:CDS
TGAGTTGCATAGCAGAACGA+GGG 0.714987 1_2:-64561306 None:intergenic
AGATAACCAAGACTCCACAA+TGG 0.734467 1_2:+64561563 Msa0084870:CDS
CTCTACTCACCGGATCAACG+GGG 0.746525 1_2:-64559497 None:intergenic
AATGGGGACGTAAATCCCTG+TGG 0.749532 1_2:-64561230 None:intergenic
TAGTACTTCAGACCTCTCGG+CGG 0.759629 1_2:+64559470 Msa0084870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATAAACAATTTTGATTT+TGG + chr1_2:64558394-64558413 Msa0084870:intron 10.0%
!! AATAAAAAAATTAAGCAAAA+TGG - chr1_2:64558437-64558456 None:intergenic 10.0%
!!! TTTTTTTATTTTTATTATGC+AGG + chr1_2:64558447-64558466 Msa0084870:intron 10.0%
!!! TATTTTTTTTTATCTAAAGA+AGG + chr1_2:64559071-64559090 Msa0084870:intron 10.0%
!! AGAAAAAACAAAATTAAATA+GGG - chr1_2:64559135-64559154 None:intergenic 10.0%
!! AAGAAAAAACAAAATTAAAT+AGG - chr1_2:64559136-64559155 None:intergenic 10.0%
!!! AACTTTACTTTATTTATTTT+TGG - chr1_2:64560189-64560208 None:intergenic 10.0%
!!! AATATAAAGTATTTATAGAA+AGG + chr1_2:64560315-64560334 Msa0084870:intron 10.0%
!!! ATATAAAGTATTTATAGAAA+GGG + chr1_2:64560316-64560335 Msa0084870:intron 10.0%
!! AAATAAAATAAAACAAACAT+GGG - chr1_2:64560557-64560576 None:intergenic 10.0%
!! AAAATAAAATAAAACAAACA+TGG - chr1_2:64560558-64560577 None:intergenic 10.0%
!!! CAATTTGATTCTAAAATAAA+TGG + chr1_2:64558642-64558661 Msa0084870:intron 15.0%
!! TTGTTTCAAAAGAAAAATAT+TGG + chr1_2:64558817-64558836 Msa0084870:intron 15.0%
!! TGTTTCAAAAGAAAAATATT+GGG + chr1_2:64558818-64558837 Msa0084870:intron 15.0%
!!! AAGTCATTTTAATATCTATT+TGG + chr1_2:64558944-64558963 Msa0084870:intron 15.0%
!! AAAAATTATTTCGTACTAAT+AGG + chr1_2:64559585-64559604 Msa0084870:intron 15.0%
!!! TATAAGTTAGTAAAATCTTT+TGG - chr1_2:64559883-64559902 None:intergenic 15.0%
!!! AATAAAGTTTTTTTTTATCG+AGG + chr1_2:64559902-64559921 Msa0084870:intron 15.0%
!! TCTCTACAAAAAAAATAATA+TGG - chr1_2:64559955-64559974 None:intergenic 15.0%
!! TAAAAATTAACCTAAAAAAG+TGG - chr1_2:64560092-64560111 None:intergenic 15.0%
!!! AAGAGTAATATACTTTTTTT+TGG + chr1_2:64560629-64560648 Msa0084870:intron 15.0%
!!! TTGTTGAATTTTATTTCTTT+TGG + chr1_2:64561886-64561905 Msa0084870:three_prime_UTR 15.0%
!! TAATTTACTCAAATTCAACA+AGG + chr1_2:64558502-64558521 Msa0084870:five_prime_UTR 20.0%
!! ATTGAGATAAAATTGAAGAA+GGG - chr1_2:64558535-64558554 None:intergenic 20.0%
!! AATTGAGATAAAATTGAAGA+AGG - chr1_2:64558536-64558555 None:intergenic 20.0%
!!! TGCTTACATTTTATTTTAGA+CGG + chr1_2:64558744-64558763 Msa0084870:intron 20.0%
!! AGATATTAAAATGACTTGAT+TGG - chr1_2:64558941-64558960 None:intergenic 20.0%
!!! TGGTTTTTCTTTTTTGATAA+AGG + chr1_2:64559717-64559736 Msa0084870:intron 20.0%
!!! GTCGAAAAATGATTTTTTTA+AGG + chr1_2:64560001-64560020 Msa0084870:intron 20.0%
!!! TAAAGGAATTTTCTACTTTT+TGG - chr1_2:64560242-64560261 None:intergenic 20.0%
!! ATTATTTGGATCATCATTAT+TGG + chr1_2:64560434-64560453 Msa0084870:intron 20.0%
!! TGAAGGTTCATTATTTATTT+AGG - chr1_2:64560506-64560525 None:intergenic 20.0%
!! TAAATAATGAACCTTCAAAT+TGG + chr1_2:64560509-64560528 Msa0084870:intron 20.0%
!!! ATTTTATTTCTTTTGGTCAT+TGG + chr1_2:64561893-64561912 Msa0084870:three_prime_UTR 20.0%
!!! TTTTATAATATCCATATCCA+TGG + chr1_2:64562052-64562071 Msa0084870:three_prime_UTR 20.0%
!! TTTATAATATCCATATCCAT+GGG + chr1_2:64562053-64562072 Msa0084870:three_prime_UTR 20.0%
! AAGAAGGTTTAAATGGTAAA+GGG - chr1_2:64558083-64558102 None:intergenic 25.0%
! AACTAAGCTTAGTTTATTTG+CGG - chr1_2:64558222-64558241 None:intergenic 25.0%
! AATAAACTAAGCTTAGTTTC+AGG + chr1_2:64558224-64558243 Msa0084870:five_prime_UTR 25.0%
!! GTTCTTTTCATTTTCTCATT+TGG + chr1_2:64558251-64558270 Msa0084870:intron 25.0%
!!! ATTCTCTAGTTTGTTTTCTT+AGG + chr1_2:64558281-64558300 Msa0084870:intron 25.0%
! AGTAAAATGAAAGAAAGCAA+GGG - chr1_2:64558373-64558392 None:intergenic 25.0%
!!! TTATCTCAATTTTCAAGTGT+TGG + chr1_2:64558545-64558564 Msa0084870:intron 25.0%
!!! TTTTCCTTTCTGAAGAAATA+CGG + chr1_2:64558585-64558604 Msa0084870:intron 25.0%
!! TCTAAAATAAATGGAGAAAC+TGG + chr1_2:64558651-64558670 Msa0084870:intron 25.0%
!!! TTACATTTTATTTTAGACGG+AGG + chr1_2:64558747-64558766 Msa0084870:intron 25.0%
!!! GAATTGCTTTGTTTTTATAG+AGG - chr1_2:64559217-64559236 None:intergenic 25.0%
! AATCACGATAAGTCAATAAA+AGG - chr1_2:64559795-64559814 None:intergenic 25.0%
!!! AATCATTTTTCGACATGAAT+TGG - chr1_2:64559995-64560014 None:intergenic 25.0%
! GAAAATTCCTTTACTTGAAT+TGG + chr1_2:64560249-64560268 Msa0084870:intron 25.0%
! TATTTATAGAAAGGGTAGTT+TGG + chr1_2:64560324-64560343 Msa0084870:intron 25.0%
! GGTTCATTATTTATTTAGGT+GGG - chr1_2:64560502-64560521 None:intergenic 25.0%
! AGGTTCATTATTTATTTAGG+TGG - chr1_2:64560503-64560522 None:intergenic 25.0%
! ATTAAAATGTCATTCACATG+TGG - chr1_2:64560696-64560715 None:intergenic 25.0%
! AAAAACAAAACATGTGTGTA+TGG - chr1_2:64560771-64560790 None:intergenic 25.0%
!!! CATGATACTTATTGATTCAA+TGG - chr1_2:64560796-64560815 None:intergenic 25.0%
! TGATCAATAAATTGCATCAT+TGG - chr1_2:64560833-64560852 None:intergenic 25.0%
! GCAATTTATTGATCAAATTG+TGG + chr1_2:64560838-64560857 Msa0084870:intron 25.0%
! TCTTCATCTATTATTCTTAG+AGG - chr1_2:64560918-64560937 None:intergenic 25.0%
! TCGAACTGTAATAATATAAC+AGG - chr1_2:64561019-64561038 None:intergenic 25.0%
!! CTTGATTTTCTTTTTCTTCT+TGG - chr1_2:64561467-64561486 None:intergenic 25.0%
! CAAGAAGAAAAAGAAAATCA+AGG + chr1_2:64561465-64561484 Msa0084870:CDS 25.0%
! AATAGGATTAATAGAACAGA+AGG + chr1_2:64561942-64561961 Msa0084870:three_prime_UTR 25.0%
! ATTAATAGAACAGAAGGAAA+GGG + chr1_2:64561948-64561967 Msa0084870:three_prime_UTR 25.0%
!!! CTAGTTATTTTAGATCACTT+AGG + chr1_2:64561994-64562013 Msa0084870:three_prime_UTR 25.0%
!!! TTATTTTAGATCACTTAGGT+CGG + chr1_2:64561998-64562017 Msa0084870:three_prime_UTR 25.0%
AGAAGGTTTAAATGGTAAAG+GGG - chr1_2:64558082-64558101 None:intergenic 30.0%
GAAGAAGGTTTAAATGGTAA+AGG - chr1_2:64558084-64558103 None:intergenic 30.0%
AGTTATTTGAAAGAGGAAAG+AGG - chr1_2:64558112-64558131 None:intergenic 30.0%
TTGCGGTGAAATTGAAATTA+AGG - chr1_2:64558205-64558224 None:intergenic 30.0%
GAGTAAAATGAAAGAAAGCA+AGG - chr1_2:64558374-64558393 None:intergenic 30.0%
CTTCAGAAAGGAAAATTGAA+TGG - chr1_2:64558580-64558599 None:intergenic 30.0%
!! TATCATAAGTTGATGTAGCT+AGG - chr1_2:64558706-64558725 None:intergenic 30.0%
TTTCCGTAAAAAATTACGTG+CGG + chr1_2:64559168-64559187 Msa0084870:intron 30.0%
!!! TTGCATATTGCCACTTTTTT+AGG + chr1_2:64560079-64560098 Msa0084870:intron 30.0%
!!! TTATTTTTGGTCAAGTAGAG+TGG - chr1_2:64560176-64560195 None:intergenic 30.0%
ATGACTTCCAATTCAAGTAA+AGG - chr1_2:64560259-64560278 None:intergenic 30.0%
ATAATGAACCTTCAAATTGG+TGG + chr1_2:64560512-64560531 Msa0084870:intron 30.0%
AAGAATAAGAACTTGTGCTT+TGG - chr1_2:64560598-64560617 None:intergenic 30.0%
!!! ATTCTTAGAGGCTAGTTTTA+TGG - chr1_2:64560906-64560925 None:intergenic 30.0%
AAATGAATCGTCCACAATAT+TGG - chr1_2:64561068-64561087 None:intergenic 30.0%
TTGGTTTCTTGACAATAATC+CGG - chr1_2:64561426-64561445 None:intergenic 30.0%
CTTGGAATACAACATTTGAA+GGG + chr1_2:64561798-64561817 Msa0084870:exon 30.0%
GATTAATAGAACAGAAGGAA+AGG + chr1_2:64561947-64561966 Msa0084870:three_prime_UTR 30.0%
AAAAAGAATTCCCATGGATA+TGG - chr1_2:64562066-64562085 None:intergenic 30.0%
TTGTTTCATTTCAATCACTC+TGG + chr1_2:64562149-64562168 Msa0084870:three_prime_UTR 30.0%
AAGGTTTAAATGGTAAAGGG+GGG - chr1_2:64558080-64558099 None:intergenic 35.0%
GAAGGTTTAAATGGTAAAGG+GGG - chr1_2:64558081-64558100 None:intergenic 35.0%
GAGAGTGAAGAAGGTTTAAA+TGG - chr1_2:64558090-64558109 None:intergenic 35.0%
TGGAGTGAGTTATTTGAAAG+AGG - chr1_2:64558119-64558138 None:intergenic 35.0%
TGAGAAGAGAATGGTAGAAA+AGG - chr1_2:64558173-64558192 None:intergenic 35.0%
AAAGAGTAGTGAGAAGAGAA+TGG - chr1_2:64558182-64558201 None:intergenic 35.0%
!! ACTAAGCTTAGTTTCAGGTT+TGG + chr1_2:64558229-64558248 Msa0084870:intron 35.0%
TTCATTAGTGAGTGTAGTGT+CGG + chr1_2:64558314-64558333 Msa0084870:intron 35.0%
AAAGAAAGCAAGGGCAAAAT+TGG - chr1_2:64558364-64558383 None:intergenic 35.0%
!! ATAAGTTGATGTAGCTAGGA+CGG - chr1_2:64558702-64558721 None:intergenic 35.0%
AAGAAAAATATTGGGACCAG+CGG + chr1_2:64558826-64558845 Msa0084870:intron 35.0%
!!! TTGCCGCACGTAATTTTTTA+CGG - chr1_2:64559174-64559193 None:intergenic 35.0%
!! TTGACTTGCAGAGAAGAAAA+TGG + chr1_2:64559278-64559297 Msa0084870:intron 35.0%
TTAAGTAACTCTCTACTCAC+CGG - chr1_2:64559510-64559529 None:intergenic 35.0%
GTCATAATCAAGCAATCAGA+CGG - chr1_2:64559622-64559641 None:intergenic 35.0%
CATCATAATAGTTCCGTGTA+CGG + chr1_2:64559641-64559660 Msa0084870:intron 35.0%
AAAGCTACAAACAGACAATC+AGG - chr1_2:64559668-64559687 None:intergenic 35.0%
AACCATTCATGATGTTGCTA+GGG - chr1_2:64559823-64559842 None:intergenic 35.0%
AAACCATTCATGATGTTGCT+AGG - chr1_2:64559824-64559843 None:intergenic 35.0%
AGTGGCAATATGCAATTGAT+TGG - chr1_2:64560074-64560093 None:intergenic 35.0%
!!! GGTAGTTTGGTCATTTTTTC+AGG + chr1_2:64560337-64560356 Msa0084870:intron 35.0%
TTCAGGAAACTTGATTGTGT+CGG + chr1_2:64560354-64560373 Msa0084870:intron 35.0%
TAGATTGACCACCAATTTGA+AGG - chr1_2:64560523-64560542 None:intergenic 35.0%
! AAACAAACATGGGTTGTTAC+TGG - chr1_2:64560547-64560566 None:intergenic 35.0%
GTTCGAAGATCTTCTTTCAT+TGG + chr1_2:64561033-64561052 Msa0084870:intron 35.0%
AAGATCTTCTTTCATTGGAG+TGG + chr1_2:64561038-64561057 Msa0084870:CDS 35.0%
AGATCTTCTTTCATTGGAGT+GGG + chr1_2:64561039-64561058 Msa0084870:CDS 35.0%
! TTGAAAATTTTGCTGAGTCC+CGG + chr1_2:64561404-64561423 Msa0084870:CDS 35.0%
TGGTTTCTTGACAATAATCC+GGG - chr1_2:64561425-64561444 None:intergenic 35.0%
TATCCTTGCATCTCATTTCA+AGG - chr1_2:64561729-64561748 None:intergenic 35.0%
CCTTCAAATGTTGTATTCCA+AGG - chr1_2:64561800-64561819 None:intergenic 35.0%
CCTTGGAATACAACATTTGA+AGG + chr1_2:64561797-64561816 Msa0084870:CDS 35.0%
!!! TTGGTCATTGGTTTTTGTAC+AGG + chr1_2:64561905-64561924 Msa0084870:three_prime_UTR 35.0%
!!! TGGTCATTGGTTTTTGTACA+GGG + chr1_2:64561906-64561925 Msa0084870:three_prime_UTR 35.0%
AACTGCAAAAAGAATTCCCA+TGG - chr1_2:64562072-64562091 None:intergenic 35.0%
AGCGGTGGCTAAAATACAAT+GGG + chr1_2:64558844-64558863 Msa0084870:intron 40.0%
GCAACGTAATTCATCCAATG+AGG - chr1_2:64558975-64558994 None:intergenic 40.0%
CAATAGTACTTCAGACCTCT+CGG + chr1_2:64559467-64559486 Msa0084870:CDS 40.0%
ACTATTTCCAGCTTGTCACA+CGG + chr1_2:64559688-64559707 Msa0084870:intron 40.0%
TTCCCTAGCAACATCATGAA+TGG + chr1_2:64559818-64559837 Msa0084870:intron 40.0%
! TGTGGACGATTCATTTTGTG+AGG + chr1_2:64561072-64561091 Msa0084870:CDS 40.0%
TCAAGGACAGAAATAGGACT+TGG - chr1_2:64561181-64561200 None:intergenic 40.0%
CTGCTTTCAAGGACAGAAAT+AGG - chr1_2:64561187-64561206 None:intergenic 40.0%
!! AAAATCTGAAGAAAGCGCCT+TGG - chr1_2:64561386-64561405 None:intergenic 40.0%
AAGAAACCAAAGCTCTCTTC+TGG + chr1_2:64561436-64561455 Msa0084870:CDS 40.0%
AGAATGGTTCACTACCTGTT+AGG + chr1_2:64561524-64561543 Msa0084870:CDS 40.0%
CAATGCATGCATTTCCTAAC+AGG - chr1_2:64561541-64561560 None:intergenic 40.0%
AGATAACCAAGACTCCACAA+TGG + chr1_2:64561563-64561582 Msa0084870:CDS 40.0%
!! CAAGCATTGCAGAGTGTTTT+TGG - chr1_2:64561607-64561626 None:intergenic 40.0%
AAAACACTCTGCAATGCTTG+CGG + chr1_2:64561607-64561626 Msa0084870:CDS 40.0%
! AAGGACCTTTTTGTGCGAAT+TGG - chr1_2:64561710-64561729 None:intergenic 40.0%
! TTTTTGTACAGGGCTGGAAT+GGG + chr1_2:64561916-64561935 Msa0084870:three_prime_UTR 40.0%
ACAGAAGGAAAGGGAAGAAA+AGG + chr1_2:64561957-64561976 Msa0084870:three_prime_UTR 40.0%
CAGAAGGAAAGGGAAGAAAA+GGG + chr1_2:64561958-64561977 Msa0084870:three_prime_UTR 40.0%
GAAGAAAAGGGTAGGATCTT+AGG + chr1_2:64561970-64561989 Msa0084870:three_prime_UTR 40.0%
TTTAGATCACTTAGGTCGGT+AGG + chr1_2:64562002-64562021 Msa0084870:three_prime_UTR 40.0%
TAAAGGGGGGTTATCAAGGA+AGG - chr1_2:64558067-64558086 None:intergenic 45.0%
ATGGTAAAGGGGGGTTATCA+AGG - chr1_2:64558071-64558090 None:intergenic 45.0%
AGGAAAGAGGAGAGTGAAGA+AGG - chr1_2:64558099-64558118 None:intergenic 45.0%
GCGACCGTATTTCTTCAGAA+AGG - chr1_2:64558592-64558611 None:intergenic 45.0%
AAAAATATTGGGACCAGCGG+TGG + chr1_2:64558829-64558848 Msa0084870:intron 45.0%
!!! CATTGTATTTTAGCCACCGC+TGG - chr1_2:64558845-64558864 None:intergenic 45.0%
CAGCGGTGGCTAAAATACAA+TGG + chr1_2:64558843-64558862 Msa0084870:intron 45.0%
TCTATTTGGCGTGACCTCAT+TGG + chr1_2:64558958-64558977 Msa0084870:intron 45.0%
CTTGCAGAGAAGAAAATGGC+TGG + chr1_2:64559282-64559301 Msa0084870:intron 45.0%
AACACCGAGTCAGACTCATT+CGG - chr1_2:64559441-64559460 None:intergenic 45.0%
ACATAATCCGTGTGACAAGC+TGG - chr1_2:64559698-64559717 None:intergenic 45.0%
! AGCTTGTCACACGGATTATG+TGG + chr1_2:64559697-64559716 Msa0084870:intron 45.0%
! TTGATTGTGTCGGTGACATG+TGG + chr1_2:64560364-64560383 Msa0084870:intron 45.0%
CACCCTACTCTCCAATTTGA+GGG + chr1_2:64560398-64560417 Msa0084870:intron 45.0%
ACCCTACTCTCCAATTTGAG+GGG + chr1_2:64560399-64560418 Msa0084870:intron 45.0%
ACCCCTCAAATTGGAGAGTA+GGG - chr1_2:64560403-64560422 None:intergenic 45.0%
GGTGCGCTGTCTCAATTATT+TGG + chr1_2:64560420-64560439 Msa0084870:intron 45.0%
GGAGAGTCTCACAATGAAAG+TGG + chr1_2:64561093-64561112 Msa0084870:CDS 45.0%
! TTGCTGACAGCTGATGATGA+TGG - chr1_2:64561127-64561146 None:intergenic 45.0%
ATCATCATCAGCTGTCAGCA+AGG + chr1_2:64561126-64561145 Msa0084870:CDS 45.0%
AGCAGGAACTACTGCTTTCA+AGG - chr1_2:64561198-64561217 None:intergenic 45.0%
TGAGTTGCATAGCAGAACGA+GGG - chr1_2:64561309-64561328 None:intergenic 45.0%
ATGAGTTGCATAGCAGAACG+AGG - chr1_2:64561310-64561329 None:intergenic 45.0%
CTCAACAGAAGAGGAAGTAG+GGG - chr1_2:64561335-64561354 None:intergenic 45.0%
CCTCAACAGAAGAGGAAGTA+GGG - chr1_2:64561336-64561355 None:intergenic 45.0%
TCCTCAACAGAAGAGGAAGT+AGG - chr1_2:64561337-64561356 None:intergenic 45.0%
CATGTTCTCCTCAACAGAAG+AGG - chr1_2:64561344-64561363 None:intergenic 45.0%
GCCTAATGTTATCTCCACCA+AGG + chr1_2:64561366-64561385 Msa0084870:CDS 45.0%
GCCTTGGTGGAGATAACATT+AGG - chr1_2:64561370-64561389 None:intergenic 45.0%
TAACCAAGACTCCACAATGG+AGG + chr1_2:64561566-64561585 Msa0084870:CDS 45.0%
AACCAAGACTCCACAATGGA+GGG + chr1_2:64561567-64561586 Msa0084870:CDS 45.0%
GCACTCCAATTCGCACAAAA+AGG + chr1_2:64561702-64561721 Msa0084870:CDS 45.0%
GGTCCTTGAAATGAGATGCA+AGG + chr1_2:64561723-64561742 Msa0084870:CDS 45.0%
! AAGGCGAGAACATTGGTGTT+TGG - chr1_2:64561781-64561800 None:intergenic 45.0%
AAACACCAATGTTCTCGCCT+TGG + chr1_2:64561780-64561799 Msa0084870:CDS 45.0%
GTATTCCAAGGCGAGAACAT+TGG - chr1_2:64561788-64561807 None:intergenic 45.0%
GGAGAGAGAAATCTCCAACT+AGG - chr1_2:64561831-64561850 None:intergenic 45.0%
ATACGACGCGACTCTAGATA+AGG - chr1_2:64561857-64561876 None:intergenic 45.0%
!!! CATTGGTTTTTGTACAGGGC+TGG + chr1_2:64561910-64561929 Msa0084870:three_prime_UTR 45.0%
! GTTTTTGTACAGGGCTGGAA+TGG + chr1_2:64561915-64561934 Msa0084870:three_prime_UTR 45.0%
! TTTTGTACAGGGCTGGAATG+GGG + chr1_2:64561917-64561936 Msa0084870:three_prime_UTR 45.0%
AGGAAAGGGAAGAAAAGGGT+AGG + chr1_2:64561962-64561981 Msa0084870:three_prime_UTR 45.0%
!!! GGAGTCAGCGTCTTTTTTCT+TGG + chr1_2:64562023-64562042 Msa0084870:three_prime_UTR 45.0%
!! ATAATATGAAATAAATAAAT+TGG + chr1_2:64558787-64558806 Msa0084870:intron 5.0%
!! TAATATGAAATAAATAAATT+GGG + chr1_2:64558788-64558807 Msa0084870:intron 5.0%
!!! TTATTTTTATTTTCTAAAAT+TGG + chr1_2:64560215-64560234 Msa0084870:intron 5.0%
GAGAGAGGGGAATAGTGTGT+TGG - chr1_2:64558139-64558158 None:intergenic 50.0%
AGGTGTGTGAGAGAGAGAGA+GGG - chr1_2:64558153-64558172 None:intergenic 50.0%
AAGGTGTGTGAGAGAGAGAG+AGG - chr1_2:64558154-64558173 None:intergenic 50.0%
! CAACGAGTTGTAGTTTGCCG+CGG - chr1_2:64559406-64559425 None:intergenic 50.0%
ACAACTCGTTGGCGAGTATC+TGG + chr1_2:64559415-64559434 Msa0084870:CDS 50.0%
!!! GAGTCTGACTCGGTGTTTTC+TGG + chr1_2:64559444-64559463 Msa0084870:CDS 50.0%
TAGTACTTCAGACCTCTCGG+CGG + chr1_2:64559470-64559489 Msa0084870:CDS 50.0%
TCTCTACTCACCGGATCAAC+GGG - chr1_2:64559501-64559520 None:intergenic 50.0%
CTCTCTACTCACCGGATCAA+CGG - chr1_2:64559502-64559521 None:intergenic 50.0%
CAGACAATCAGGTCCGTACA+CGG - chr1_2:64559657-64559676 None:intergenic 50.0%
CCTCAAATTGGAGAGTAGGG+TGG - chr1_2:64560400-64560419 None:intergenic 50.0%
CCACCCTACTCTCCAATTTG+AGG + chr1_2:64560397-64560416 Msa0084870:intron 50.0%
CACCCCTCAAATTGGAGAGT+AGG - chr1_2:64560404-64560423 None:intergenic 50.0%
GGAGTGGGTGTCCAATATTG+TGG + chr1_2:64561054-64561073 Msa0084870:CDS 50.0%
ATCATCAGCTGTCAGCAAGG+AGG + chr1_2:64561129-64561148 Msa0084870:CDS 50.0%
GAAAGCAGTAGTTCCTGCTC+TGG + chr1_2:64561199-64561218 Msa0084870:CDS 50.0%
AATGGGGACGTAAATCCCTG+TGG - chr1_2:64561233-64561252 None:intergenic 50.0%
AGGGATTTACGTCCCCATTC+CGG + chr1_2:64561234-64561253 Msa0084870:CDS 50.0%
CATAGCAGAACGAGGGTTGA+AGG - chr1_2:64561302-64561321 None:intergenic 50.0%
CCCTACTTCCTCTTCTGTTG+AGG + chr1_2:64561333-64561352 Msa0084870:CDS 50.0%
!! ATCTGAAGAAAGCGCCTTGG+TGG - chr1_2:64561383-64561402 None:intergenic 50.0%
GTCTCTCCAGAAGAGAGCTT+TGG - chr1_2:64561445-64561464 None:intergenic 50.0%
!!! CAGAGTGTTTTTGGCCCCAT+TGG - chr1_2:64561598-64561617 None:intergenic 50.0%
TTGCGGTGTACGCTACAAGT+CGG + chr1_2:64561624-64561643 Msa0084870:CDS 50.0%
!! CAAAACGTTGGACTAGCAGC+AGG - chr1_2:64561673-64561692 None:intergenic 50.0%
TGCACAGCTGGACAAAACGT+TGG - chr1_2:64561685-64561704 None:intergenic 50.0%
TGAAGGGAACTGAGCCTAGT+TGG + chr1_2:64561814-64561833 Msa0084870:exon 50.0%
GGTGTGTGAGAGAGAGAGAG+GGG - chr1_2:64558152-64558171 None:intergenic 55.0%
! TTGTAGTTTGCCGCGGAGGA+GGG - chr1_2:64559399-64559418 None:intergenic 55.0%
CGCGGCAAACTACAACTCGT+TGG + chr1_2:64559404-64559423 Msa0084870:CDS 55.0%
CTGGCCGAATGAGTCTGACT+CGG + chr1_2:64559434-64559453 Msa0084870:CDS 55.0%
CTCTACTCACCGGATCAACG+GGG - chr1_2:64559500-64559519 None:intergenic 55.0%
AGACAGCGCACCCCTCAAAT+TGG - chr1_2:64560412-64560431 None:intergenic 55.0%
CTGTCAGCAAGGAGGACTCT+GGG + chr1_2:64561137-64561156 Msa0084870:CDS 55.0%
AGCAGTAGTTCCTGCTCTGG+TGG + chr1_2:64561202-64561221 Msa0084870:CDS 55.0%
TGTGGTCTTTCCACCAGAGC+AGG - chr1_2:64561215-64561234 None:intergenic 55.0%
TGCTCTGGTGGAAAGACCAC+AGG + chr1_2:64561214-64561233 Msa0084870:CDS 55.0%
GCTCTGGTGGAAAGACCACA+GGG + chr1_2:64561215-64561234 Msa0084870:CDS 55.0%
AACGAGGGTTGAAGGCTGTG+GGG - chr1_2:64561294-64561313 None:intergenic 55.0%
GAACGAGGGTTGAAGGCTGT+GGG - chr1_2:64561295-64561314 None:intergenic 55.0%
AGAACGAGGGTTGAAGGCTG+TGG - chr1_2:64561296-64561315 None:intergenic 55.0%
TCAGCTGGAGCAGTAGGAAG+TGG - chr1_2:64561493-64561512 None:intergenic 55.0%
TTCTGTTCGCCACTGTCAGC+TGG - chr1_2:64561508-64561527 None:intergenic 55.0%
GCTGACAGTGGCGAACAGAA+TGG + chr1_2:64561508-64561527 Msa0084870:CDS 55.0%
TGCCCTCCATTGTGGAGTCT+TGG - chr1_2:64561572-64561591 None:intergenic 55.0%
AAGACTCCACAATGGAGGGC+AGG + chr1_2:64561571-64561590 Msa0084870:CDS 55.0%
ATTGGACCTGCCCTCCATTG+TGG - chr1_2:64561580-64561599 None:intergenic 55.0%
ACAATGGAGGGCAGGTCCAA+TGG + chr1_2:64561579-64561598 Msa0084870:CDS 55.0%
CAATGGAGGGCAGGTCCAAT+GGG + chr1_2:64561580-64561599 Msa0084870:CDS 55.0%
AATGGAGGGCAGGTCCAATG+GGG + chr1_2:64561581-64561600 Msa0084870:CDS 55.0%
TGCGGTGTACGCTACAAGTC+GGG + chr1_2:64561625-64561644 Msa0084870:CDS 55.0%
GCCGACTATTCCCCGAATAC+CGG + chr1_2:64561647-64561666 Msa0084870:CDS 55.0%
GCCGGTATTCGGGGAATAGT+CGG - chr1_2:64561651-64561670 None:intergenic 55.0%
ACTAGCAGCAGGCCGGTATT+CGG - chr1_2:64561662-64561681 None:intergenic 55.0%
TGCGAATTGGAGTGCACAGC+TGG - chr1_2:64561697-64561716 None:intergenic 55.0%
ACGCGACTCTAGATAAGGCG+AGG - chr1_2:64561852-64561871 None:intergenic 55.0%
AGGGCTGGAATGGGGAGAAT+AGG + chr1_2:64561925-64561944 Msa0084870:three_prime_UTR 55.0%
! AGCGGTGTCAACGTCGTCGA+CGG - chr1_2:64559364-64559383 None:intergenic 60.0%
! GTTGTAGTTTGCCGCGGAGG+AGG - chr1_2:64559400-64559419 None:intergenic 60.0%
! CGAGTTGTAGTTTGCCGCGG+AGG - chr1_2:64559403-64559422 None:intergenic 60.0%
GCTGTCAGCAAGGAGGACTC+TGG + chr1_2:64561136-64561155 Msa0084870:CDS 60.0%
CCACTGTCAGCTGGAGCAGT+AGG - chr1_2:64561499-64561518 None:intergenic 60.0%
CCTACTGCTCCAGCTGACAG+TGG + chr1_2:64561496-64561515 Msa0084870:CDS 60.0%
TAGCAGCAGGCCGGTATTCG+GGG - chr1_2:64561660-64561679 None:intergenic 60.0%
CTAGCAGCAGGCCGGTATTC+GGG - chr1_2:64561661-64561680 None:intergenic 60.0%
!! ACGTTGGACTAGCAGCAGGC+CGG - chr1_2:64561669-64561688 None:intergenic 60.0%
! CGGTGTCAACGTCGTCGACG+GGG - chr1_2:64559362-64559381 None:intergenic 65.0%
! GCGGTGTCAACGTCGTCGAC+GGG - chr1_2:64559363-64559382 None:intergenic 65.0%
GGAGGGCAATGAAGCGGCAG+CGG - chr1_2:64559382-64559401 None:intergenic 65.0%
CGCGGAGGAGGGCAATGAAG+CGG - chr1_2:64559388-64559407 None:intergenic 65.0%
CGCTTCATTGCCCTCCTCCG+CGG + chr1_2:64559386-64559405 Msa0084870:CDS 65.0%
GTCCCCATTCCGGTGCCTTG+CGG + chr1_2:64561244-64561263 Msa0084870:CDS 65.0%
!! GTCCGCAAGGCACCGGAATG+GGG - chr1_2:64561249-64561268 None:intergenic 65.0%
!! CGTCCGCAAGGCACCGGAAT+GGG - chr1_2:64561250-64561269 None:intergenic 65.0%
!! ACGTCCGCAAGGCACCGGAA+TGG - chr1_2:64561251-64561270 None:intergenic 65.0%
TTGGTGCGTGCACGTCCGCA+AGG - chr1_2:64561262-64561281 None:intergenic 65.0%
GGCGGAGCTCCCCGTTGATC+CGG + chr1_2:64559488-64559507 Msa0084870:CDS 70.0%
CGTGCACGTCCGCAAGGCAC+CGG - chr1_2:64561256-64561275 None:intergenic 70.0%
GGGTTGAAGGCTGTGGGGCG+TGG - chr1_2:64561289-64561308 None:intergenic 70.0%
CAACGGGGAGCTCCGCCGAG+AGG - chr1_2:64559485-64559504 None:intergenic 75.0%
GGCTGTGGGGCGTGGACGCT+TGG - chr1_2:64561281-64561300 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 64558031 64562181 64558031 ID=Msa0084870;Name=Msa0084870
chr1_2 mRNA 64558031 64562181 64558031 ID=Msa0084870-mRNA-1;Parent=Msa0084870;Name=Msa0084870-mRNA-1;_AED=0.05;_eAED=0.05;_QI=173|1|1|1|0.25|0.4|5|365|331
chr1_2 exon 64558031 64558060 64558031 ID=Msa0084870-mRNA-1:exon:21798;Parent=Msa0084870-mRNA-1
chr1_2 exon 64558166 64558245 64558166 ID=Msa0084870-mRNA-1:exon:21799;Parent=Msa0084870-mRNA-1
chr1_2 exon 64558469 64558523 64558469 ID=Msa0084870-mRNA-1:exon:21800;Parent=Msa0084870-mRNA-1
chr1_2 exon 64559289 64559509 64559289 ID=Msa0084870-mRNA-1:exon:21801;Parent=Msa0084870-mRNA-1
chr1_2 exon 64561034 64562181 64561034 ID=Msa0084870-mRNA-1:exon:21802;Parent=Msa0084870-mRNA-1
chr1_2 five_prime_UTR 64558031 64558060 64558031 ID=Msa0084870-mRNA-1:five_prime_utr;Parent=Msa0084870-mRNA-1
chr1_2 five_prime_UTR 64558166 64558245 64558166 ID=Msa0084870-mRNA-1:five_prime_utr;Parent=Msa0084870-mRNA-1
chr1_2 five_prime_UTR 64558469 64558523 64558469 ID=Msa0084870-mRNA-1:five_prime_utr;Parent=Msa0084870-mRNA-1
chr1_2 five_prime_UTR 64559289 64559296 64559289 ID=Msa0084870-mRNA-1:five_prime_utr;Parent=Msa0084870-mRNA-1
chr1_2 CDS 64559297 64559509 64559297 ID=Msa0084870-mRNA-1:cds;Parent=Msa0084870-mRNA-1
chr1_2 CDS 64561034 64561816 64561034 ID=Msa0084870-mRNA-1:cds;Parent=Msa0084870-mRNA-1
chr1_2 three_prime_UTR 64561817 64562181 64561817 ID=Msa0084870-mRNA-1:three_prime_utr;Parent=Msa0084870-mRNA-1
Gene Sequence

>Msa0084870

ATGGCTGGAACAATGAACGAGATTGATTGCTTCAACTTATTTGACAACATTGATGACATCTACCCCGTCGACGACGTTGACACCGCTGCCGCTTCATTGCCCTCCTCCGCGGCAAACTACAACTCGTTGGCGAGTATCTGGCCGAATGAGTCTGACTCGGTGTTTTCTGGCAATAGTACTTCAGACCTCTCGGCGGAGCTCCCCGTTGATCCGTTCGAAGATCTTCTTTCATTGGAGTGGGTGTCCAATATTGTGGACGATTCATTTTGTGAGGAGAGTCTCACAATGAAAGTGGAGCAGCAGCCATCATCATCAGCTGTCAGCAAGGAGGACTCTGGGCATTATCAATTTCAGACACCAAGTCCTATTTCTGTCCTTGAAAGCAGTAGTTCCTGCTCTGGTGGAAAGACCACAGGGATTTACGTCCCCATTCCGGTGCCTTGCGGACGTGCACGCACCAAGCGTCCACGCCCCACAGCCTTCAACCCTCGTTCTGCTATGCAACTCATTTCCCCTACTTCCTCTTCTGTTGAGGAGAACATGCAGCCTAATGTTATCTCCACCAAGGCGCTTTCTTCAGATTTTGAAAATTTTGCTGAGTCCCGGATTATTGTCAAGAAACCAAAGCTCTCTTCTGGAGAGACCAAGAAGAAAAAGAAAATCAAGGCACCACTTCCTACTGCTCCAGCTGACAGTGGCGAACAGAATGGTTCACTACCTGTTAGGAAATGCATGCATTGTGAGATAACCAAGACTCCACAATGGAGGGCAGGTCCAATGGGGCCAAAAACACTCTGCAATGCTTGCGGTGTACGCTACAAGTCGGGCCGACTATTCCCCGAATACCGGCCTGCTGCTAGTCCAACGTTTTGTCCAGCTGTGCACTCCAATTCGCACAAAAAGGTCCTTGAAATGAGATGCAAGGATAGTTTTGAATCAGATTCAGCTGAACTCATTCCAAACACCAATGTTCTCGCCTTGGAATACAACATTTGA
Protein sequence

>Msa0084870

MAGTMNEIDCFNLFDNIDDIYPVDDVDTAAASLPSSAANYNSLASIWPNESDSVFSGNSTSDLSAELPVDPFEDLLSLEWVSNIVDDSFCEESLTMKVEQQPSSSAVSKEDSGHYQFQTPSPISVLESSSSCSGGKTTGIYVPIPVPCGRARTKRPRPTAFNPRSAMQLISPTSSSVEENMQPNVISTKALSSDFENFAESRIIVKKPKLSSGETKKKKKIKAPLPTAPADSGEQNGSLPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPAVHSNSHKKVLEMRCKDSFESDSAELIPNTNVLALEYNI*