AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0446510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0446510 MtrunA17_Chr2g0284681 92.231 605 42 2 1 602 1 603 0.0 1142
Msa0446510 MtrunA17_Chr4g0073741 68.026 613 171 6 1 596 1 605 0.0 853
Msa0446510 MtrunA17_Chr4g0031301 66.667 606 177 6 8 596 9 606 0.0 817
Msa0446510 MtrunA17_Chr4g0031321 66.337 606 179 6 8 596 9 606 0.0 812
Msa0446510 MtrunA17_Chr7g0223181 65.898 607 182 6 8 597 9 607 0.0 807
Msa0446510 MtrunA17_Chr7g0262821 65.512 606 184 6 8 596 9 606 0.0 803
Msa0446510 MtrunA17_Chr7g0223291 65.842 606 182 6 8 596 9 606 0.0 803
Msa0446510 MtrunA17_Chr6g0462681 55.000 600 244 6 8 590 9 599 0.0 663
Msa0446510 MtrunA17_Chr7g0223741 58.719 562 217 8 5 561 6 557 0.0 652
Msa0446510 MtrunA17_Chr8g0388671 55.259 599 237 8 2 581 32 618 0.0 650
Msa0446510 MtrunA17_Chr6g0462601 55.667 600 240 6 8 590 9 599 0.0 650
Msa0446510 MtrunA17_Chr8g0388761 54.515 598 241 8 3 581 33 618 0.0 647
Msa0446510 MtrunA17_Chr5g0427901 54.194 620 244 9 8 597 9 618 0.0 643
Msa0446510 MtrunA17_Chr7g0223751 57.066 559 224 9 8 561 9 556 0.0 638
Msa0446510 MtrunA17_Chr7g0223711 56.584 562 229 7 5 561 6 557 0.0 637
Msa0446510 MtrunA17_Chr7g0221661 54.680 609 247 9 8 597 9 607 0.0 635
Msa0446510 MtrunA17_Chr2g0298851 54.045 618 254 10 5 602 6 613 0.0 632
Msa0446510 MtrunA17_Chr2g0293581 53.566 603 251 9 7 589 9 602 0.0 625
Msa0446510 MtrunA17_Chr8g0350731 57.066 559 224 8 8 561 37 584 0.0 625
Msa0446510 MtrunA17_Chr7g0233311 57.371 563 226 6 8 565 9 562 0.0 624
Msa0446510 MtrunA17_Chr7g0223731 56.228 562 230 8 5 561 6 556 0.0 623
Msa0446510 MtrunA17_Chr6g0462771 52.066 605 263 7 5 589 6 603 0.0 619
Msa0446510 MtrunA17_Chr7g0223721 53.008 615 259 10 8 602 9 613 0.0 617
Msa0446510 MtrunA17_Chr7g0223801 52.217 609 260 10 8 597 9 605 0.0 615
Msa0446510 MtrunA17_Chr7g0223701 53.084 616 254 9 8 597 9 615 0.0 615
Msa0446510 MtrunA17_Chr6g0462711 52.649 604 262 7 5 589 7 605 0.0 615
Msa0446510 MtrunA17_Chr6g0462641 52.303 608 266 7 1 589 1 603 0.0 614
Msa0446510 MtrunA17_Chr7g0223781 55.477 566 235 8 8 568 9 562 0.0 614
Msa0446510 MtrunA17_Chr7g0223621 55.277 559 234 8 8 561 9 556 0.0 613
Msa0446510 MtrunA17_Chr7g0225671 53.376 622 259 11 1 602 9 619 0.0 612
Msa0446510 MtrunA17_Chr7g0223031 54.804 562 238 8 5 561 6 556 0.0 610
Msa0446510 MtrunA17_Chr7g0223851 52.666 619 261 11 5 602 15 622 0.0 606
Msa0446510 MtrunA17_Chr2g0287631 52.520 615 263 9 8 602 9 614 0.0 605
Msa0446510 MtrunA17_Chr7g0248131 55.749 574 228 12 8 573 9 564 0.0 602
Msa0446510 MtrunA17_Chr2g0298861 51.597 626 261 12 9 602 10 625 0.0 601
Msa0446510 MtrunA17_Chr4g0040931 51.870 615 266 10 8 602 9 613 0.0 600
Msa0446510 MtrunA17_Chr7g0223631 54.025 559 227 10 8 561 9 542 0.0 587
Msa0446510 MtrunA17_Chr7g0248151 55.714 560 227 9 8 559 9 555 0.0 587
Msa0446510 MtrunA17_Chr2g0296391 56.015 532 220 6 4 530 5 527 0.0 583
Msa0446510 MtrunA17_Chr7g0233301 54.270 562 218 6 8 567 9 533 0.0 581
Msa0446510 MtrunA17_Chr7g0223821 51.043 623 268 11 5 602 6 616 0.0 573
Msa0446510 MtrunA17_Chr7g0217971 50.915 601 241 10 8 589 9 574 0.0 573
Msa0446510 MtrunA17_Chr7g0215261 52.743 565 216 8 7 565 8 527 0.0 558
Msa0446510 MtrunA17_Chr4g0012541 49.596 619 271 12 5 602 6 604 0.0 553
Msa0446510 MtrunA17_Chr8g0390821 46.970 660 255 13 8 597 11 645 0.0 551
Msa0446510 MtrunA17_Chr7g0223831 52.297 566 227 9 5 565 6 533 0.0 549
Msa0446510 MtrunA17_Chr6g0462611 52.095 549 235 7 59 590 10 547 0.0 548
Msa0446510 MtrunA17_Chr2g0331381 52.222 540 187 8 9 546 7 477 0.0 545
Msa0446510 MtrunA17_Chr7g0223541 53.924 497 216 6 71 564 31 517 0.0 525
Msa0446510 MtrunA17_Chr7g0228281 47.403 616 249 10 7 602 69 629 2.19e-179 522
Msa0446510 MtrunA17_Chr2g0293601 53.295 516 199 7 8 521 9 484 6.57e-179 515
Msa0446510 MtrunA17_Chr7g0223681 54.088 477 205 7 88 561 2 467 3.08e-175 508
Msa0446510 MtrunA17_Chr2g0299921 66.324 389 121 4 8 396 1029 1407 5.68e-168 523
Msa0446510 MtrunA17_Chr2g0299921 65.722 388 122 6 8 394 1413 1790 1.14e-154 486
Msa0446510 MtrunA17_Chr2g0299821 60.636 409 146 6 9 411 10 409 4.12e-166 482
Msa0446510 MtrunA17_Chr2g0299821 40.714 140 60 3 425 541 343 482 2.39e-21 97.4
Msa0446510 MtrunA17_Chr2g0293561 62.567 374 130 4 8 379 9 374 1.64e-165 477
Msa0446510 MtrunA17_Chr2g0299851 63.566 387 131 5 8 394 1038 1414 3.49e-162 500
Msa0446510 MtrunA17_Chr2g0279901 45.997 587 273 15 9 577 57 617 3.57e-160 474
Msa0446510 MtrunA17_Chr2g0299791 63.566 387 131 5 8 394 1042 1418 1.50e-156 485
Msa0446510 MtrunA17_Chr4g0049501 44.444 603 295 14 6 591 51 630 1.77e-156 464
Msa0446510 MtrunA17_Chr6g0462861 46.235 571 261 14 8 563 9 548 6.12e-153 454
Msa0446510 MtrunA17_Chr1g0166551 43.421 608 207 11 8 597 5 493 9.21e-151 444
Msa0446510 MtrunA17_Chr2g0299881 60.870 391 139 6 8 394 1038 1418 1.62e-147 462
Msa0446510 MtrunA17_Chr2g0299881 62.121 66 21 1 184 249 1414 1475 3.87e-16 82.8
Msa0446510 MtrunA17_Chr2g0277021 44.923 581 286 14 7 575 70 628 1.16e-145 437
Msa0446510 MtrunA17_Chr2g0293271 47.865 445 148 6 20 459 43 408 1.83e-130 388
Msa0446510 MtrunA17_Chr1g0151991 62.069 290 104 3 5 292 6 291 8.50e-125 369
Msa0446510 MtrunA17_Chr7g0245521 65.056 269 88 3 8 274 9 273 4.13e-119 354
Msa0446510 MtrunA17_Chr6g0462631 48.529 340 124 5 83 422 9 297 1.27e-96 297
Msa0446510 MtrunA17_Chr6g0462751 42.936 361 139 5 61 419 9 304 3.05e-90 281
Msa0446510 MtrunA17_Chr7g0223761 39.410 373 165 6 240 597 3 329 8.08e-80 255
Msa0446510 MtrunA17_Chr7g0223671 59.896 192 75 1 71 262 8 197 2.70e-78 246
Msa0446510 MtrunA17_Chr1g0188601 62.176 193 69 2 91 283 3 191 4.86e-77 243
Msa0446510 MtrunA17_Chr4g0004331 31.890 508 315 9 9 496 4 500 1.97e-75 257
Msa0446510 MtrunA17_Chr2g0331901 31.866 477 299 8 9 470 4 469 1.07e-73 252
Msa0446510 MtrunA17_Chr5g0394391 31.755 507 316 12 8 498 29 521 1.09e-73 246
Msa0446510 MtrunA17_Chr7g0245531 43.689 309 151 6 306 597 2 304 7.26e-73 236
Msa0446510 MtrunA17_Chr6g0462791 60.556 180 66 3 105 284 1 175 3.17e-68 219
Msa0446510 MtrunA17_Chr3g0098761 29.563 504 333 8 9 502 4 495 2.97e-67 233
Msa0446510 MtrunA17_Chr5g0444001 31.264 435 282 6 9 437 4 427 2.72e-66 226
Msa0446510 MtrunA17_Chr7g0223771 64.935 154 52 1 91 244 2 153 8.81e-65 209
Msa0446510 MtrunA17_Chr1g0152001 40.594 303 156 7 317 602 2 297 1.76e-64 214
Msa0446510 MtrunA17_Chr4g0060241 30.315 508 316 12 9 500 21 506 2.28e-57 202
Msa0446510 MtrunA17_Chr4g0064621 31.879 527 326 13 8 512 140 655 1.05e-56 203
Msa0446510 MtrunA17_Chr1g0188611 43.885 278 139 7 323 589 1 272 4.03e-55 188
Msa0446510 MtrunA17_Chr7g0223861 65.414 133 44 1 75 207 4 134 2.18e-54 181
Msa0446510 MtrunA17_Chr3g0120101 26.554 531 346 11 6 502 24 544 4.47e-52 192
Msa0446510 MtrunA17_Chr4g0046881 61.074 149 51 3 128 276 10 151 1.37e-51 174
Msa0446510 MtrunA17_Chr6g0462701 52.353 170 53 3 102 271 27 168 2.69e-46 160
Msa0446510 MtrunA17_Chr5g0394231 40.693 231 82 5 71 300 5 181 1.67e-45 159
Msa0446510 MtrunA17_Chr5g0442171 32.845 341 189 11 169 491 1 319 1.88e-43 158
Msa0446510 MtrunA17_Chr6g0462691 52.055 146 63 2 323 465 1 142 8.86e-43 150
Msa0446510 MtrunA17_Chr5g0394221 35.316 269 160 6 300 563 69 328 6.84e-41 152
Msa0446510 MtrunA17_Chr6g0481391 53.226 124 53 2 35 158 13 131 1.05e-34 127
Msa0446510 MtrunA17_Chr4g0046871 54.717 106 43 2 336 441 5 105 7.40e-30 113
Msa0446510 MtrunA17_Chr2g0284661 62.500 96 33 1 360 452 48 143 9.86e-30 114
Msa0446510 MtrunA17_Chr2g0284661 83.636 55 9 0 224 278 5 59 8.74e-24 97.4
Msa0446510 MtrunA17_Chr6g0462621 70.423 71 20 1 1 70 1 71 3.94e-28 107
Msa0446510 MtrunA17_Chr7g0245541 34.375 192 108 3 423 597 1 191 8.58e-27 108
Msa0446510 MtrunA17_Chr6g0481381 63.514 74 27 0 175 248 1 74 2.15e-25 103
Msa0446510 MtrunA17_Chr7g0223691 70.769 65 17 1 8 70 9 73 4.24e-25 99.0
Msa0446510 MtrunA17_Chr1g0188591 64.706 68 22 1 5 70 6 73 8.62e-24 95.9
Msa0446510 MtrunA17_Chr7g0223791 52.439 82 31 2 53 134 18 91 2.26e-19 86.3
Msa0446510 MtrunA17_Chr7g0223791 36.709 79 50 0 486 564 90 168 9.55e-12 64.3
Msa0446510 MtrunA17_Chr7g0223881 50.667 75 36 1 289 363 9 82 3.90e-18 79.3
Msa0446510 MtrunA17_Chr6g0462801 53.030 66 30 1 323 387 1 66 6.99e-16 72.8
Msa0446510 MtrunA17_Chr4g0064651 38.462 91 53 1 404 491 30 120 2.91e-15 72.4
Msa0446510 MtrunA17_Chr7g0221651 40.698 86 49 1 214 299 1 84 6.35e-15 70.5
Msa0446510 MtrunA17_Chr2g0299891 63.636 44 16 0 317 360 2 45 1.45e-13 66.2
Msa0446510 MtrunA17_Chr5g0442161 30.065 153 100 4 8 156 28 177 6.14e-13 67.4
Msa0446510 MtrunA17_Chr2g0299941 60.000 55 19 1 405 456 23 77 2.18e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0446510 AT1G16030.1 66.721 613 179 6 1 596 1 605 0.0 829
Msa0446510 AT3G12580.1 66.722 607 177 6 8 597 9 607 0.0 811
Msa0446510 AT5G02500.1 65.898 607 182 6 8 597 9 607 0.0 806
Msa0446510 AT3G09440.1 65.733 607 183 6 8 597 9 607 0.0 797
Msa0446510 AT3G09440.4 65.733 607 183 6 8 597 9 607 0.0 797
Msa0446510 AT3G09440.2 65.733 607 183 6 8 597 9 607 0.0 797
Msa0446510 AT3G09440.3 65.733 607 183 6 8 597 9 607 0.0 797
Msa0446510 AT5G02490.1 65.074 607 187 6 8 597 9 607 0.0 792
Msa0446510 AT1G56410.1 64.793 605 190 7 8 597 9 605 0.0 784
Msa0446510 AT5G42020.1 55.537 614 242 8 2 596 31 632 0.0 670
Msa0446510 AT5G42020.3 55.537 614 242 8 2 596 36 637 0.0 669
Msa0446510 AT5G28540.1 55.375 614 243 8 2 596 31 632 0.0 667
Msa0446510 AT1G09080.2 55.776 606 238 7 9 596 43 636 0.0 652
Msa0446510 AT1G09080.1 55.776 606 238 7 9 596 53 646 0.0 651
Msa0446510 AT5G42020.2 51.667 600 232 11 2 596 31 577 0.0 582
Msa0446510 AT5G02500.2 70.305 394 109 4 8 401 9 394 0.0 569
Msa0446510 AT5G02500.2 44.565 92 37 1 520 597 386 477 1.91e-15 79.7
Msa0446510 AT5G09590.1 45.812 585 278 15 9 577 60 621 1.64e-155 462
Msa0446510 AT4G37910.1 46.140 570 269 13 9 563 55 601 2.51e-150 449
Msa0446510 AT4G37910.2 46.140 570 269 13 9 563 55 601 2.51e-150 449
Msa0446510 AT5G49910.1 44.062 581 291 14 7 575 79 637 4.79e-144 434
Msa0446510 AT4G24280.1 44.406 581 289 15 7 575 79 637 8.11e-144 434
Msa0446510 AT1G79930.2 34.081 446 270 6 9 441 4 438 9.33e-79 265
Msa0446510 AT1G79930.1 34.081 446 270 6 9 441 4 438 2.12e-78 265
Msa0446510 AT1G79920.1 34.081 446 270 6 9 441 4 438 4.99e-78 262
Msa0446510 AT1G79920.3 34.081 446 270 6 9 441 4 438 5.10e-78 262
Msa0446510 AT1G79920.2 34.081 446 270 6 9 441 4 438 5.10e-78 262
Msa0446510 AT1G79920.4 34.081 446 270 6 9 441 4 438 5.10e-78 262
Msa0446510 AT1G11660.4 28.808 604 370 12 9 563 4 596 2.91e-73 250
Msa0446510 AT1G11660.3 28.808 604 370 12 9 563 4 596 2.91e-73 250
Msa0446510 AT1G11660.1 28.808 604 370 12 9 563 4 596 2.91e-73 250
Msa0446510 AT2G32120.1 30.077 522 322 13 8 512 30 525 6.17e-65 223
Msa0446510 AT2G32120.2 30.077 522 322 13 8 512 30 525 6.17e-65 223
Msa0446510 AT1G11660.2 28.647 569 346 12 44 563 2 559 2.16e-64 225
Msa0446510 AT4G16660.2 25.895 475 319 8 5 456 47 511 1.88e-48 182
Msa0446510 AT4G16660.1 25.895 475 319 8 5 456 23 487 2.23e-48 181

Find 119 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAATTGCTGAAACTTATT+TGG 0.082085 3_3:-22331312 Msa0446510:CDS
CATGGTGTTGTCTAAATTAA+AGG 0.157364 3_3:-22331333 Msa0446510:CDS
TCAAAACAAATATTGATATT+TGG 0.181030 3_3:+22330261 None:intergenic
TTGATATTTGGAACCTTTCT+AGG 0.182799 3_3:+22330273 None:intergenic
ACTGCAGCTGCTATTGCTTA+TGG 0.208608 3_3:-22331161 Msa0446510:CDS
TGGTTTGGAACAACCTTAAA+AGG 0.212043 3_3:+22331428 None:intergenic
TGTTGATGTTAATGGAATTT+TGG 0.222928 3_3:-22330238 Msa0446510:CDS
GTTTCAACACCAAGACTAAA+AGG 0.273894 3_3:+22330474 None:intergenic
CAATCATGGGTTTGTCTTTG+TGG 0.290878 3_3:+22331408 None:intergenic
CAGTGAGAATTCCAAAGCTT+TGG 0.318063 3_3:-22330919 Msa0446510:CDS
CCTGATGAAGCTGTGGCTTA+TGG 0.330474 3_3:-22330573 Msa0446510:CDS
AATGTTCTTGTCTTTGATCT+TGG 0.331932 3_3:-22331104 Msa0446510:CDS
AGTGAGAATTCCAAAGCTTT+GGG 0.334628 3_3:-22330918 Msa0446510:CDS
GAAATTGCTGAAACTTATTT+GGG 0.342870 3_3:-22331311 Msa0446510:CDS
ACACGGTTCCCTTGGTCGTT+TGG 0.354947 3_3:+22331611 None:intergenic
CGAAGGAATGTTCCAGGTTA+AGG 0.357597 3_3:-22331045 Msa0446510:CDS
TTCAGTAGTTGTTGAATCTT+CGG 0.360449 3_3:+22330648 None:intergenic
ACTTTGGGAGATACTCATTT+GGG 0.360641 3_3:-22331020 Msa0446510:CDS
GAGGGATTCCGAGCGGTATA+AGG 0.361947 3_3:-22330118 Msa0446510:CDS
TTCCAGGTTAAGGCCACTTT+GGG 0.364020 3_3:-22331035 Msa0446510:CDS
ACCGATACTGAAAGATTAAT+AGG 0.373414 3_3:-22331566 Msa0446510:CDS
TTATGTCTTGTTGGACTGAT+TGG 0.374106 3_3:+22331459 None:intergenic
AGCTGCTATTGCTTATGGTT+TGG 0.376546 3_3:-22331156 Msa0446510:CDS
CACTTTGGGAGATACTCATT+TGG 0.379211 3_3:-22331021 Msa0446510:CDS
ATGGGTTTGTCTTTGTGGTT+TGG 0.379293 3_3:+22331413 None:intergenic
ACTCATCAATTTCTGCCAAT+TGG 0.383486 3_3:+22329965 None:intergenic
TCCAACAAGACATAAGGTTT+TGG 0.384795 3_3:-22331451 Msa0446510:CDS
AGGCAGAGGATGAGGAGGTT+AGG 0.400721 3_3:-22330098 Msa0446510:CDS
TCTTAACCTCCCCAAAGCTT+TGG 0.400779 3_3:+22330908 None:intergenic
ACTCAACCTTCCCTCCTTGT+TGG 0.402188 3_3:+22330164 None:intergenic
CAATAACAAATTCATGAACT+TGG 0.402514 3_3:+22330691 None:intergenic
CTTGTCTTTGATCTTGGTGG+TGG 0.402810 3_3:-22331098 Msa0446510:CDS
GCCAAAACCTTATGTCTTGT+TGG 0.404961 3_3:+22331450 None:intergenic
TTTGATGCCAAACGTTTGAT+TGG 0.412646 3_3:-22331497 Msa0446510:CDS
GTTCTTGTCTTTGATCTTGG+TGG 0.414303 3_3:-22331101 Msa0446510:CDS
GTTCATGAATTTGTTATTGT+CGG 0.430114 3_3:-22330687 Msa0446510:CDS
AGAATTATGTTTATGAAATG+AGG 0.432257 3_3:-22330047 Msa0446510:CDS
GTAGGGATCCTAGTATTCTT+CGG 0.433514 3_3:+22330423 None:intergenic
ATGAAATGAGGGAGAGAGTG+AGG 0.434187 3_3:-22330035 Msa0446510:CDS
TTTGTAATTGACAACAATCA+TGG 0.440479 3_3:+22331394 None:intergenic
CTCCCAAAGTGGCCTTAACC+TGG 0.442345 3_3:+22331033 None:intergenic
TGTTGACGAAGGAATGTTCC+AGG 0.444778 3_3:-22331051 Msa0446510:CDS
GTTCCAGGTTAAGGCCACTT+TGG 0.448544 3_3:-22331036 Msa0446510:CDS
TCGGTGAAGGCAACGTAAGA+AGG 0.448873 3_3:+22331584 None:intergenic
GGATGAGGAGGTTAGGAAGA+AGG 0.449706 3_3:-22330091 Msa0446510:CDS
GATTGAAGGCTTATTGCTGT+TGG 0.451601 3_3:-22330505 Msa0446510:CDS
ATGCTCTTTAGTACCTAGAA+AGG 0.452071 3_3:-22330286 Msa0446510:CDS
CCATAAGCCACAGCTTCATC+AGG 0.453102 3_3:+22330573 None:intergenic
ATCATTCTTCTCATCTCTTG+AGG 0.461303 3_3:+22330141 None:intergenic
AGTCTTGGTGTTGAAACTAA+AGG 0.463181 3_3:-22330468 Msa0446510:CDS
TATGAAATAATTCAACAAGA+TGG 0.465475 3_3:+22330967 None:intergenic
ACTGCTGAAGATAAGACAAA+AGG 0.472237 3_3:-22330210 Msa0446510:CDS
TTTGATCAAAACAATACCTT+GGG 0.472355 3_3:+22330374 None:intergenic
ACCTATTAATCTTTCAGTAT+CGG 0.473250 3_3:+22331565 None:intergenic
GCGGTATAAGGCAGAGGATG+AGG 0.474792 3_3:-22330106 Msa0446510:CDS
GCGATGACCAATCAAACGTT+TGG 0.484985 3_3:+22331490 None:intergenic
CTTTGATCAAAACAATACCT+TGG 0.487239 3_3:+22330373 None:intergenic
AGGAGAACATGCTAAGACTA+AGG 0.487241 3_3:-22330343 Msa0446510:CDS
GAGGAAGCTTGAAAAGGTAG+TGG 0.489230 3_3:-22330016 Msa0446510:CDS
GAAGGAGACAAGAAGATTGA+AGG 0.489825 3_3:-22330519 Msa0446510:CDS
TGAGTTTGAATTCAAGAAGC+AGG 0.491801 3_3:-22329947 Msa0446510:CDS
TGAATTCAAGAAGCAGGAGT+TGG 0.497584 3_3:-22329941 Msa0446510:CDS
GATCCTCATCACATTAAAAC+CGG 0.502743 3_3:+22331196 None:intergenic
GAGAGTGAGGAAGCTTGAAA+AGG 0.502774 3_3:-22330022 Msa0446510:CDS
GAATTATGTTTATGAAATGA+GGG 0.504803 3_3:-22330046 Msa0446510:CDS
CTGCTGAAGATAAGACAAAA+GGG 0.507869 3_3:-22330209 Msa0446510:CDS
AATCAGTCCAACAAGACATA+AGG 0.516258 3_3:-22331457 Msa0446510:CDS
AAGGGGTGACACGGTTCCCT+TGG 0.517703 3_3:+22331603 None:intergenic
TGTACCAAGGTCAATGCCTA+TGG 0.520221 3_3:+22331682 None:intergenic
CATGAATTTGTTATTGTCGG+AGG 0.522698 3_3:-22330684 Msa0446510:CDS
TGTGAGTTGTTGAAGTAAGC+AGG 0.526143 3_3:+22331251 None:intergenic
TTGTAATTGACAACAATCAT+GGG 0.527199 3_3:+22331395 None:intergenic
ATCCTCTGCCTTATACCGCT+CGG 0.528888 3_3:+22330110 None:intergenic
CGGTGAAGGCAACGTAAGAA+GGG 0.529846 3_3:+22331585 None:intergenic
AGCTTGATTCACTATGTGAA+GGG 0.532350 3_3:-22330830 Msa0446510:CDS
TAGTGGAGGAAAGTATAGAA+TGG 0.539580 3_3:-22329999 Msa0446510:CDS
CAAAACAATACCTTGGGCTG+TGG 0.540094 3_3:+22330380 None:intergenic
TCCTCAAGAGATATCTTCCA+TGG 0.543689 3_3:-22331351 Msa0446510:CDS
TCCTTCGTCAACAGTCACTA+AGG 0.546693 3_3:+22331061 None:intergenic
TTCCGAGCGGTATAAGGCAG+AGG 0.550389 3_3:-22330112 Msa0446510:CDS
ATGAATTTGTTATTGTCGGA+GGG 0.553906 3_3:-22330683 Msa0446510:CDS
ATTTCATAGAAAGTACAAGA+AGG 0.557642 3_3:-22330952 Msa0446510:CDS
GCAGCAATATTGAATACTGA+AGG 0.571285 3_3:-22330537 Msa0446510:CDS
TTGGGAGATACTCATTTGGG+TGG 0.571754 3_3:-22331017 Msa0446510:CDS
GAAGATTCAACAACTACTGA+AGG 0.574421 3_3:-22330646 Msa0446510:CDS
GACAAGAAAATGTGGAGAGA+AGG 0.578701 3_3:-22331134 Msa0446510:CDS
ATGATTGTTGTCAATTACAA+AGG 0.584826 3_3:-22331392 Msa0446510:CDS
TAATCTTTCAGTATCGGTGA+AGG 0.586135 3_3:+22331571 None:intergenic
AGACAAGCTACAAAAGATGC+AGG 0.588448 3_3:-22331227 Msa0446510:CDS
ATCATTATCACCAACAAGGA+GGG 0.590966 3_3:-22330174 Msa0446510:CDS
AGAGATGAGAAGAATGATGA+GGG 0.595789 3_3:-22330136 Msa0446510:CDS
GAAGCTTGAAAAGGTAGTGG+AGG 0.595927 3_3:-22330013 Msa0446510:CDS
AAGGAAATGTTTAGTGTCAA+CGG 0.596200 3_3:-22330627 Msa0446510:CDS
TGTGGAGAAGTGTTTGATTG+AGG 0.604035 3_3:-22330730 Msa0446510:CDS
TACAGCTGTAGCTTGTACCA+AGG 0.607846 3_3:+22331669 None:intergenic
AGAATTCCAAAGCTTTGGGG+AGG 0.611200 3_3:-22330914 Msa0446510:CDS
CATTAATCCTGATGAAGCTG+TGG 0.613030 3_3:-22330580 Msa0446510:CDS
TAAGCAATAGCAGCTGCAGT+AGG 0.618882 3_3:+22331164 None:intergenic
GTGAGAATTCCAAAGCTTTG+GGG 0.624343 3_3:-22330917 Msa0446510:CDS
AAGAGATGAGAAGAATGATG+AGG 0.628540 3_3:-22330137 Msa0446510:CDS
CAACGTAAGAAGGGGTGACA+CGG 0.629570 3_3:+22331594 None:intergenic
AGATCATTCCAAACGACCAA+GGG 0.630317 3_3:-22331619 Msa0446510:CDS
GAGATCATTCCAAACGACCA+AGG 0.630381 3_3:-22331620 Msa0446510:CDS
ATGGTTTGGACAAGAAAATG+TGG 0.630603 3_3:-22331142 Msa0446510:CDS
TTATCACCAACAAGGAGGGA+AGG 0.634341 3_3:-22330170 Msa0446510:CDS
GAGCTTGATTCACTATGTGA+AGG 0.634799 3_3:-22330831 Msa0446510:CDS
ACCATGGAAGATATCTCTTG+AGG 0.635361 3_3:+22331350 None:intergenic
CAAATGAGTATCTCCCAAAG+TGG 0.637746 3_3:+22331022 None:intergenic
AAAGCCATAGGCATTGACCT+TGG 0.638972 3_3:-22331686 Msa0446510:CDS
TCCTTAGTGACTGTTGACGA+AGG 0.640013 3_3:-22331062 Msa0446510:CDS
GTATAAGGCAGAGGATGAGG+AGG 0.650304 3_3:-22330103 Msa0446510:CDS
CAGCATGCGAGAAAGCAAAG+AGG 0.658762 3_3:-22330884 Msa0446510:CDS
GATCATTATCACCAACAAGG+AGG 0.670278 3_3:-22330175 Msa0446510:CDS
GGTGAAGGCAACGTAAGAAG+GGG 0.671684 3_3:+22331586 None:intergenic
CTTTAATTTAGACAACACCA+TGG 0.682894 3_3:+22331334 None:intergenic
CTTGGTGTTGAAACTAAAGG+TGG 0.707841 3_3:-22330465 Msa0446510:CDS
GAAGATCATTATCACCAACA+AGG 0.723817 3_3:-22330178 Msa0446510:CDS
GCTACAGCTGTATTGCAGTG+TGG 0.732257 3_3:-22331658 Msa0446510:CDS
GAATGATGAGGGATTCCGAG+CGG 0.743997 3_3:-22330125 Msa0446510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAAACAAATATTGATATT+TGG + chr3_3:22331364-22331383 None:intergenic 15.0%
!! TCAAAACAAATATTGATATT+TGG + chr3_3:22331364-22331383 None:intergenic 15.0%
!!! TGTTGATTTTGATAACAATT+TGG - chr3_3:22330628-22330647 Msa0446510:CDS 20.0%
!! TATGAAATAATTCAACAAGA+TGG + chr3_3:22330658-22330677 None:intergenic 20.0%
!!! TTTTTTTGAGGAAATAAACA+AGG - chr3_3:22330844-22330863 Msa0446510:CDS 20.0%
!! AGAATTATGTTTATGAAATG+AGG - chr3_3:22331575-22331594 Msa0446510:CDS 20.0%
!! GAATTATGTTTATGAAATGA+GGG - chr3_3:22331576-22331595 Msa0446510:CDS 20.0%
!!! TGTTGATTTTGATAACAATT+TGG - chr3_3:22330628-22330647 Msa0446510:CDS 20.0%
!! TATGAAATAATTCAACAAGA+TGG + chr3_3:22330658-22330677 None:intergenic 20.0%
!!! TTTTTTTGAGGAAATAAACA+AGG - chr3_3:22330844-22330863 Msa0446510:CDS 20.0%
!! AGAATTATGTTTATGAAATG+AGG - chr3_3:22331575-22331594 Msa0446510:CDS 20.0%
!! GAATTATGTTTATGAAATGA+GGG - chr3_3:22331576-22331595 Msa0446510:CDS 20.0%
! ACCTATTAATCTTTCAGTAT+CGG + chr3_3:22330060-22330079 None:intergenic 25.0%
! TTGTAATTGACAACAATCAT+GGG + chr3_3:22330230-22330249 None:intergenic 25.0%
! TTTGTAATTGACAACAATCA+TGG + chr3_3:22330231-22330250 None:intergenic 25.0%
! ATGATTGTTGTCAATTACAA+AGG - chr3_3:22330230-22330249 Msa0446510:CDS 25.0%
! GAAATTGCTGAAACTTATTT+GGG - chr3_3:22330311-22330330 Msa0446510:CDS 25.0%
!! ATTTCATAGAAAGTACAAGA+AGG - chr3_3:22330670-22330689 Msa0446510:CDS 25.0%
! CAATAACAAATTCATGAACT+TGG + chr3_3:22330934-22330953 None:intergenic 25.0%
!!! GTTCATGAATTTGTTATTGT+CGG - chr3_3:22330935-22330954 Msa0446510:CDS 25.0%
!!! AAACATTCTCCTTTTTTGTA+GGG + chr3_3:22331219-22331238 None:intergenic 25.0%
!!! AAAACATTCTCCTTTTTTGT+AGG + chr3_3:22331220-22331239 None:intergenic 25.0%
! TTTGATCAAAACAATACCTT+GGG + chr3_3:22331251-22331270 None:intergenic 25.0%
!!! TGTTTTGATGTTGATGTTAA+TGG - chr3_3:22331376-22331395 Msa0446510:CDS 25.0%
!! TGTTGATGTTAATGGAATTT+TGG - chr3_3:22331384-22331403 Msa0446510:CDS 25.0%
! ACCTATTAATCTTTCAGTAT+CGG + chr3_3:22330060-22330079 None:intergenic 25.0%
! TTGTAATTGACAACAATCAT+GGG + chr3_3:22330230-22330249 None:intergenic 25.0%
! TTTGTAATTGACAACAATCA+TGG + chr3_3:22330231-22330250 None:intergenic 25.0%
! ATGATTGTTGTCAATTACAA+AGG - chr3_3:22330230-22330249 Msa0446510:CDS 25.0%
! GAAATTGCTGAAACTTATTT+GGG - chr3_3:22330311-22330330 Msa0446510:CDS 25.0%
!! ATTTCATAGAAAGTACAAGA+AGG - chr3_3:22330670-22330689 Msa0446510:CDS 25.0%
! CAATAACAAATTCATGAACT+TGG + chr3_3:22330934-22330953 None:intergenic 25.0%
!!! GTTCATGAATTTGTTATTGT+CGG - chr3_3:22330935-22330954 Msa0446510:CDS 25.0%
!!! AAACATTCTCCTTTTTTGTA+GGG + chr3_3:22331219-22331238 None:intergenic 25.0%
!!! AAAACATTCTCCTTTTTTGT+AGG + chr3_3:22331220-22331239 None:intergenic 25.0%
! TTTGATCAAAACAATACCTT+GGG + chr3_3:22331251-22331270 None:intergenic 25.0%
!!! TGTTTTGATGTTGATGTTAA+TGG - chr3_3:22331376-22331395 Msa0446510:CDS 25.0%
!! TGTTGATGTTAATGGAATTT+TGG - chr3_3:22331384-22331403 Msa0446510:CDS 25.0%
ACCGATACTGAAAGATTAAT+AGG - chr3_3:22330056-22330075 Msa0446510:CDS 30.0%
!!! ATTTTTGGCTGATTGGTTTA+TGG + chr3_3:22330090-22330109 None:intergenic 30.0%
! GAGGAGAAAAATGTTTTTCT+TGG + chr3_3:22330256-22330275 None:intergenic 30.0%
! CTTTAATTTAGACAACACCA+TGG + chr3_3:22330291-22330310 None:intergenic 30.0%
!! CATGGTGTTGTCTAAATTAA+AGG - chr3_3:22330289-22330308 Msa0446510:CDS 30.0%
GGAAATTGCTGAAACTTATT+TGG - chr3_3:22330310-22330329 Msa0446510:CDS 30.0%
AATGTTCTTGTCTTTGATCT+TGG - chr3_3:22330518-22330537 Msa0446510:CDS 30.0%
!!! TGTTACTAGAGCTTTTTTTG+AGG - chr3_3:22330832-22330851 Msa0446510:CDS 30.0%
!! ATGAATTTGTTATTGTCGGA+GGG - chr3_3:22330939-22330958 Msa0446510:CDS 30.0%
TTCAGTAGTTGTTGAATCTT+CGG + chr3_3:22330977-22330996 None:intergenic 30.0%
AAGGAAATGTTTAGTGTCAA+CGG - chr3_3:22330995-22331014 Msa0446510:CDS 30.0%
!! TTTTGATTCCGAAGAATACT+AGG - chr3_3:22331191-22331210 Msa0446510:CDS 30.0%
CTTTGATCAAAACAATACCT+TGG + chr3_3:22331252-22331271 None:intergenic 30.0%
!! GTTTTGATCAAAGTCTATGA+AGG - chr3_3:22331259-22331278 Msa0446510:CDS 30.0%
! TTGATATTTGGAACCTTTCT+AGG + chr3_3:22331352-22331371 None:intergenic 30.0%
! TGATGTTAATGGAATTTTGG+AGG - chr3_3:22331387-22331406 Msa0446510:CDS 30.0%
ACCGATACTGAAAGATTAAT+AGG - chr3_3:22330056-22330075 Msa0446510:CDS 30.0%
!!! ATTTTTGGCTGATTGGTTTA+TGG + chr3_3:22330090-22330109 None:intergenic 30.0%
! GAGGAGAAAAATGTTTTTCT+TGG + chr3_3:22330256-22330275 None:intergenic 30.0%
! CTTTAATTTAGACAACACCA+TGG + chr3_3:22330291-22330310 None:intergenic 30.0%
!! CATGGTGTTGTCTAAATTAA+AGG - chr3_3:22330289-22330308 Msa0446510:CDS 30.0%
GGAAATTGCTGAAACTTATT+TGG - chr3_3:22330310-22330329 Msa0446510:CDS 30.0%
AATGTTCTTGTCTTTGATCT+TGG - chr3_3:22330518-22330537 Msa0446510:CDS 30.0%
!!! TGTTACTAGAGCTTTTTTTG+AGG - chr3_3:22330832-22330851 Msa0446510:CDS 30.0%
!! ATGAATTTGTTATTGTCGGA+GGG - chr3_3:22330939-22330958 Msa0446510:CDS 30.0%
TTCAGTAGTTGTTGAATCTT+CGG + chr3_3:22330977-22330996 None:intergenic 30.0%
AAGGAAATGTTTAGTGTCAA+CGG - chr3_3:22330995-22331014 Msa0446510:CDS 30.0%
!! TTTTGATTCCGAAGAATACT+AGG - chr3_3:22331191-22331210 Msa0446510:CDS 30.0%
CTTTGATCAAAACAATACCT+TGG + chr3_3:22331252-22331271 None:intergenic 30.0%
!! GTTTTGATCAAAGTCTATGA+AGG - chr3_3:22331259-22331278 Msa0446510:CDS 30.0%
! TTGATATTTGGAACCTTTCT+AGG + chr3_3:22331352-22331371 None:intergenic 30.0%
! TGATGTTAATGGAATTTTGG+AGG - chr3_3:22331387-22331406 Msa0446510:CDS 30.0%
ACAAGAAAAAGCAAAGCCAT+AGG - chr3_3:22329924-22329943 Msa0446510:CDS 35.0%
!! TAATCTTTCAGTATCGGTGA+AGG + chr3_3:22330054-22330073 None:intergenic 35.0%
CAAACGTTTGGCATCAAAAA+CGG + chr3_3:22330123-22330142 None:intergenic 35.0%
TTTGATGCCAAACGTTTGAT+TGG - chr3_3:22330125-22330144 Msa0446510:CDS 35.0%
! TTATGTCTTGTTGGACTGAT+TGG + chr3_3:22330166-22330185 None:intergenic 35.0%
AATCAGTCCAACAAGACATA+AGG - chr3_3:22330165-22330184 Msa0446510:CDS 35.0%
! TCCAACAAGACATAAGGTTT+TGG - chr3_3:22330171-22330190 Msa0446510:CDS 35.0%
!! CATAAGGTTTTGGCCTTTTA+AGG - chr3_3:22330181-22330200 Msa0446510:CDS 35.0%
! TGGTTTGGAACAACCTTAAA+AGG + chr3_3:22330197-22330216 None:intergenic 35.0%
AAAGATGCAGGAAAAATTGC+CGG - chr3_3:22330407-22330426 Msa0446510:CDS 35.0%
GATCCTCATCACATTAAAAC+CGG + chr3_3:22330429-22330448 None:intergenic 35.0%
! ATGGTTTGGACAAGAAAATG+TGG - chr3_3:22330480-22330499 Msa0446510:CDS 35.0%
! ACTTTGGGAGATACTCATTT+GGG - chr3_3:22330602-22330621 Msa0446510:CDS 35.0%
AGTGAGAATTCCAAAGCTTT+GGG - chr3_3:22330704-22330723 Msa0446510:CDS 35.0%
AGCTTGATTCACTATGTGAA+GGG - chr3_3:22330792-22330811 Msa0446510:CDS 35.0%
!! CATGAATTTGTTATTGTCGG+AGG - chr3_3:22330938-22330957 Msa0446510:CDS 35.0%
GAAGATTCAACAACTACTGA+AGG - chr3_3:22330976-22330995 Msa0446510:CDS 35.0%
! TCAGGATTAATGCTTTTGCA+AGG + chr3_3:22331034-22331053 None:intergenic 35.0%
GCAGCAATATTGAATACTGA+AGG - chr3_3:22331085-22331104 Msa0446510:CDS 35.0%
! GATGTTATGCCTTTTAGTCT+TGG - chr3_3:22331139-22331158 Msa0446510:CDS 35.0%
GTTTCAACACCAAGACTAAA+AGG + chr3_3:22331151-22331170 None:intergenic 35.0%
!! AGTCTTGGTGTTGAAACTAA+AGG - chr3_3:22331154-22331173 Msa0446510:CDS 35.0%
TACTAGGATCCCTACAAAAA+AGG - chr3_3:22331207-22331226 Msa0446510:CDS 35.0%
! ACTAAGGACAACTTTTTGCT+TGG - chr3_3:22331295-22331314 Msa0446510:CDS 35.0%
ATGCTCTTTAGTACCTAGAA+AGG - chr3_3:22331336-22331355 Msa0446510:CDS 35.0%
ACTGCTGAAGATAAGACAAA+AGG - chr3_3:22331412-22331431 Msa0446510:CDS 35.0%
CTGCTGAAGATAAGACAAAA+GGG - chr3_3:22331413-22331432 Msa0446510:CDS 35.0%
GAAGATCATTATCACCAACA+AGG - chr3_3:22331444-22331463 Msa0446510:CDS 35.0%
ATCATTATCACCAACAAGGA+GGG - chr3_3:22331448-22331467 Msa0446510:CDS 35.0%
ATCATTCTTCTCATCTCTTG+AGG + chr3_3:22331484-22331503 None:intergenic 35.0%
AAGAGATGAGAAGAATGATG+AGG - chr3_3:22331485-22331504 Msa0446510:CDS 35.0%
AGAGATGAGAAGAATGATGA+GGG - chr3_3:22331486-22331505 Msa0446510:CDS 35.0%
! TAGTGGAGGAAAGTATAGAA+TGG - chr3_3:22331623-22331642 Msa0446510:CDS 35.0%
ATGGCTTGACAAAAACCAAT+TGG - chr3_3:22331642-22331661 Msa0446510:CDS 35.0%
ACTCATCAATTTCTGCCAAT+TGG + chr3_3:22331660-22331679 None:intergenic 35.0%
TGAGTTTGAATTCAAGAAGC+AGG - chr3_3:22331675-22331694 Msa0446510:CDS 35.0%
ACAAGAAAAAGCAAAGCCAT+AGG - chr3_3:22329924-22329943 Msa0446510:CDS 35.0%
!! TAATCTTTCAGTATCGGTGA+AGG + chr3_3:22330054-22330073 None:intergenic 35.0%
CAAACGTTTGGCATCAAAAA+CGG + chr3_3:22330123-22330142 None:intergenic 35.0%
TTTGATGCCAAACGTTTGAT+TGG - chr3_3:22330125-22330144 Msa0446510:CDS 35.0%
! TTATGTCTTGTTGGACTGAT+TGG + chr3_3:22330166-22330185 None:intergenic 35.0%
AATCAGTCCAACAAGACATA+AGG - chr3_3:22330165-22330184 Msa0446510:CDS 35.0%
! TCCAACAAGACATAAGGTTT+TGG - chr3_3:22330171-22330190 Msa0446510:CDS 35.0%
!! CATAAGGTTTTGGCCTTTTA+AGG - chr3_3:22330181-22330200 Msa0446510:CDS 35.0%
! TGGTTTGGAACAACCTTAAA+AGG + chr3_3:22330197-22330216 None:intergenic 35.0%
AAAGATGCAGGAAAAATTGC+CGG - chr3_3:22330407-22330426 Msa0446510:CDS 35.0%
GATCCTCATCACATTAAAAC+CGG + chr3_3:22330429-22330448 None:intergenic 35.0%
! ATGGTTTGGACAAGAAAATG+TGG - chr3_3:22330480-22330499 Msa0446510:CDS 35.0%
! ACTTTGGGAGATACTCATTT+GGG - chr3_3:22330602-22330621 Msa0446510:CDS 35.0%
AGTGAGAATTCCAAAGCTTT+GGG - chr3_3:22330704-22330723 Msa0446510:CDS 35.0%
AGCTTGATTCACTATGTGAA+GGG - chr3_3:22330792-22330811 Msa0446510:CDS 35.0%
!! CATGAATTTGTTATTGTCGG+AGG - chr3_3:22330938-22330957 Msa0446510:CDS 35.0%
GAAGATTCAACAACTACTGA+AGG - chr3_3:22330976-22330995 Msa0446510:CDS 35.0%
! TCAGGATTAATGCTTTTGCA+AGG + chr3_3:22331034-22331053 None:intergenic 35.0%
GCAGCAATATTGAATACTGA+AGG - chr3_3:22331085-22331104 Msa0446510:CDS 35.0%
! GATGTTATGCCTTTTAGTCT+TGG - chr3_3:22331139-22331158 Msa0446510:CDS 35.0%
GTTTCAACACCAAGACTAAA+AGG + chr3_3:22331151-22331170 None:intergenic 35.0%
!! AGTCTTGGTGTTGAAACTAA+AGG - chr3_3:22331154-22331173 Msa0446510:CDS 35.0%
TACTAGGATCCCTACAAAAA+AGG - chr3_3:22331207-22331226 Msa0446510:CDS 35.0%
! ACTAAGGACAACTTTTTGCT+TGG - chr3_3:22331295-22331314 Msa0446510:CDS 35.0%
ATGCTCTTTAGTACCTAGAA+AGG - chr3_3:22331336-22331355 Msa0446510:CDS 35.0%
ACTGCTGAAGATAAGACAAA+AGG - chr3_3:22331412-22331431 Msa0446510:CDS 35.0%
CTGCTGAAGATAAGACAAAA+GGG - chr3_3:22331413-22331432 Msa0446510:CDS 35.0%
GAAGATCATTATCACCAACA+AGG - chr3_3:22331444-22331463 Msa0446510:CDS 35.0%
ATCATTATCACCAACAAGGA+GGG - chr3_3:22331448-22331467 Msa0446510:CDS 35.0%
ATCATTCTTCTCATCTCTTG+AGG + chr3_3:22331484-22331503 None:intergenic 35.0%
AAGAGATGAGAAGAATGATG+AGG - chr3_3:22331485-22331504 Msa0446510:CDS 35.0%
AGAGATGAGAAGAATGATGA+GGG - chr3_3:22331486-22331505 Msa0446510:CDS 35.0%
! TAGTGGAGGAAAGTATAGAA+TGG - chr3_3:22331623-22331642 Msa0446510:CDS 35.0%
ATGGCTTGACAAAAACCAAT+TGG - chr3_3:22331642-22331661 Msa0446510:CDS 35.0%
ACTCATCAATTTCTGCCAAT+TGG + chr3_3:22331660-22331679 None:intergenic 35.0%
TGAGTTTGAATTCAAGAAGC+AGG - chr3_3:22331675-22331694 Msa0446510:CDS 35.0%
AGATCATTCCAAACGACCAA+GGG - chr3_3:22330003-22330022 Msa0446510:CDS 40.0%
!!! TGTGTGGATTTTTGGCTGAT+TGG + chr3_3:22330097-22330116 None:intergenic 40.0%
!!! AACGGTGTTGTGTGGATTTT+TGG + chr3_3:22330105-22330124 None:intergenic 40.0%
GCCAAAACCTTATGTCTTGT+TGG + chr3_3:22330175-22330194 None:intergenic 40.0%
ATGGGTTTGTCTTTGTGGTT+TGG + chr3_3:22330212-22330231 None:intergenic 40.0%
CAATCATGGGTTTGTCTTTG+TGG + chr3_3:22330217-22330236 None:intergenic 40.0%
TCCTCAAGAGATATCTTCCA+TGG - chr3_3:22330271-22330290 Msa0446510:CDS 40.0%
ACCATGGAAGATATCTCTTG+AGG + chr3_3:22330275-22330294 None:intergenic 40.0%
TGTGAGTTGTTGAAGTAAGC+AGG + chr3_3:22330374-22330393 None:intergenic 40.0%
AGACAAGCTACAAAAGATGC+AGG - chr3_3:22330395-22330414 Msa0446510:CDS 40.0%
!!! TTGCCGGTTTTAATGTGATG+AGG - chr3_3:22330423-22330442 Msa0446510:CDS 40.0%
AGCTGCTATTGCTTATGGTT+TGG - chr3_3:22330466-22330485 Msa0446510:CDS 40.0%
GACAAGAAAATGTGGAGAGA+AGG - chr3_3:22330488-22330507 Msa0446510:CDS 40.0%
GTTCTTGTCTTTGATCTTGG+TGG - chr3_3:22330521-22330540 Msa0446510:CDS 40.0%
CAAATGAGTATCTCCCAAAG+TGG + chr3_3:22330603-22330622 None:intergenic 40.0%
! CACTTTGGGAGATACTCATT+TGG - chr3_3:22330601-22330620 Msa0446510:CDS 40.0%
CAGTGAGAATTCCAAAGCTT+TGG - chr3_3:22330703-22330722 Msa0446510:CDS 40.0%
GTGAGAATTCCAAAGCTTTG+GGG - chr3_3:22330705-22330724 Msa0446510:CDS 40.0%
GAGCTTGATTCACTATGTGA+AGG - chr3_3:22330791-22330810 Msa0446510:CDS 40.0%
! CAAAAAGTGCATGAAGACTG+TGG - chr3_3:22330874-22330893 Msa0446510:CDS 40.0%
!! TGTGGAGAAGTGTTTGATTG+AGG - chr3_3:22330892-22330911 Msa0446510:CDS 40.0%
CATTAATCCTGATGAAGCTG+TGG - chr3_3:22331042-22331061 Msa0446510:CDS 40.0%
GAAGGAGACAAGAAGATTGA+AGG - chr3_3:22331103-22331122 Msa0446510:CDS 40.0%
GATTGAAGGCTTATTGCTGT+TGG - chr3_3:22331117-22331136 Msa0446510:CDS 40.0%
!! CTTGGTGTTGAAACTAAAGG+TGG - chr3_3:22331157-22331176 Msa0446510:CDS 40.0%
GTAGGGATCCTAGTATTCTT+CGG + chr3_3:22331202-22331221 None:intergenic 40.0%
AGGAGAACATGCTAAGACTA+AGG - chr3_3:22331279-22331298 Msa0446510:CDS 40.0%
GATCATTATCACCAACAAGG+AGG - chr3_3:22331447-22331466 Msa0446510:CDS 40.0%
TGAATTCAAGAAGCAGGAGT+TGG - chr3_3:22331681-22331700 Msa0446510:CDS 40.0%
AGATCATTCCAAACGACCAA+GGG - chr3_3:22330003-22330022 Msa0446510:CDS 40.0%
!!! TGTGTGGATTTTTGGCTGAT+TGG + chr3_3:22330097-22330116 None:intergenic 40.0%
!!! AACGGTGTTGTGTGGATTTT+TGG + chr3_3:22330105-22330124 None:intergenic 40.0%
GCCAAAACCTTATGTCTTGT+TGG + chr3_3:22330175-22330194 None:intergenic 40.0%
ATGGGTTTGTCTTTGTGGTT+TGG + chr3_3:22330212-22330231 None:intergenic 40.0%
CAATCATGGGTTTGTCTTTG+TGG + chr3_3:22330217-22330236 None:intergenic 40.0%
TCCTCAAGAGATATCTTCCA+TGG - chr3_3:22330271-22330290 Msa0446510:CDS 40.0%
ACCATGGAAGATATCTCTTG+AGG + chr3_3:22330275-22330294 None:intergenic 40.0%
TGTGAGTTGTTGAAGTAAGC+AGG + chr3_3:22330374-22330393 None:intergenic 40.0%
AGACAAGCTACAAAAGATGC+AGG - chr3_3:22330395-22330414 Msa0446510:CDS 40.0%
!!! TTGCCGGTTTTAATGTGATG+AGG - chr3_3:22330423-22330442 Msa0446510:CDS 40.0%
AGCTGCTATTGCTTATGGTT+TGG - chr3_3:22330466-22330485 Msa0446510:CDS 40.0%
GACAAGAAAATGTGGAGAGA+AGG - chr3_3:22330488-22330507 Msa0446510:CDS 40.0%
GTTCTTGTCTTTGATCTTGG+TGG - chr3_3:22330521-22330540 Msa0446510:CDS 40.0%
CAAATGAGTATCTCCCAAAG+TGG + chr3_3:22330603-22330622 None:intergenic 40.0%
! CACTTTGGGAGATACTCATT+TGG - chr3_3:22330601-22330620 Msa0446510:CDS 40.0%
CAGTGAGAATTCCAAAGCTT+TGG - chr3_3:22330703-22330722 Msa0446510:CDS 40.0%
GTGAGAATTCCAAAGCTTTG+GGG - chr3_3:22330705-22330724 Msa0446510:CDS 40.0%
GAGCTTGATTCACTATGTGA+AGG - chr3_3:22330791-22330810 Msa0446510:CDS 40.0%
! CAAAAAGTGCATGAAGACTG+TGG - chr3_3:22330874-22330893 Msa0446510:CDS 40.0%
!! TGTGGAGAAGTGTTTGATTG+AGG - chr3_3:22330892-22330911 Msa0446510:CDS 40.0%
CATTAATCCTGATGAAGCTG+TGG - chr3_3:22331042-22331061 Msa0446510:CDS 40.0%
GAAGGAGACAAGAAGATTGA+AGG - chr3_3:22331103-22331122 Msa0446510:CDS 40.0%
GATTGAAGGCTTATTGCTGT+TGG - chr3_3:22331117-22331136 Msa0446510:CDS 40.0%
!! CTTGGTGTTGAAACTAAAGG+TGG - chr3_3:22331157-22331176 Msa0446510:CDS 40.0%
GTAGGGATCCTAGTATTCTT+CGG + chr3_3:22331202-22331221 None:intergenic 40.0%
AGGAGAACATGCTAAGACTA+AGG - chr3_3:22331279-22331298 Msa0446510:CDS 40.0%
GATCATTATCACCAACAAGG+AGG - chr3_3:22331447-22331466 Msa0446510:CDS 40.0%
TGAATTCAAGAAGCAGGAGT+TGG - chr3_3:22331681-22331700 Msa0446510:CDS 40.0%
!! AAAGCCATAGGCATTGACCT+TGG - chr3_3:22329936-22329955 Msa0446510:CDS 45.0%
TGTACCAAGGTCAATGCCTA+TGG + chr3_3:22329943-22329962 None:intergenic 45.0%
! TACAGCTGTAGCTTGTACCA+AGG + chr3_3:22329956-22329975 None:intergenic 45.0%
GAGATCATTCCAAACGACCA+AGG - chr3_3:22330002-22330021 Msa0446510:CDS 45.0%
!! GCATCAAAAACGGTGTTGTG+TGG + chr3_3:22330113-22330132 None:intergenic 45.0%
GCGATGACCAATCAAACGTT+TGG + chr3_3:22330135-22330154 None:intergenic 45.0%
TAAGCAATAGCAGCTGCAGT+AGG + chr3_3:22330461-22330480 None:intergenic 45.0%
ACTGCAGCTGCTATTGCTTA+TGG - chr3_3:22330461-22330480 Msa0446510:CDS 45.0%
CTTGTCTTTGATCTTGGTGG+TGG - chr3_3:22330524-22330543 Msa0446510:CDS 45.0%
TCCTTAGTGACTGTTGACGA+AGG - chr3_3:22330560-22330579 Msa0446510:CDS 45.0%
TCCTTCGTCAACAGTCACTA+AGG + chr3_3:22330564-22330583 None:intergenic 45.0%
TGTTGACGAAGGAATGTTCC+AGG - chr3_3:22330571-22330590 Msa0446510:CDS 45.0%
CGAAGGAATGTTCCAGGTTA+AGG - chr3_3:22330577-22330596 Msa0446510:CDS 45.0%
! TTCCAGGTTAAGGCCACTTT+GGG - chr3_3:22330587-22330606 Msa0446510:CDS 45.0%
TTGGGAGATACTCATTTGGG+TGG - chr3_3:22330605-22330624 Msa0446510:CDS 45.0%
!! AGAATTCCAAAGCTTTGGGG+AGG - chr3_3:22330708-22330727 Msa0446510:CDS 45.0%
TCTTAACCTCCCCAAAGCTT+TGG + chr3_3:22330717-22330736 None:intergenic 45.0%
! AATGTTTTCTCCACAGCCCA+AGG - chr3_3:22331232-22331251 Msa0446510:CDS 45.0%
CAAAACAATACCTTGGGCTG+TGG + chr3_3:22331245-22331264 None:intergenic 45.0%
TTATCACCAACAAGGAGGGA+AGG - chr3_3:22331452-22331471 Msa0446510:CDS 45.0%
ATGAAATGAGGGAGAGAGTG+AGG - chr3_3:22331587-22331606 Msa0446510:CDS 45.0%
GAGAGTGAGGAAGCTTGAAA+AGG - chr3_3:22331600-22331619 Msa0446510:CDS 45.0%
GAGGAAGCTTGAAAAGGTAG+TGG - chr3_3:22331606-22331625 Msa0446510:CDS 45.0%
! GAAGCTTGAAAAGGTAGTGG+AGG - chr3_3:22331609-22331628 Msa0446510:CDS 45.0%
!! AAAGCCATAGGCATTGACCT+TGG - chr3_3:22329936-22329955 Msa0446510:CDS 45.0%
TGTACCAAGGTCAATGCCTA+TGG + chr3_3:22329943-22329962 None:intergenic 45.0%
! TACAGCTGTAGCTTGTACCA+AGG + chr3_3:22329956-22329975 None:intergenic 45.0%
GAGATCATTCCAAACGACCA+AGG - chr3_3:22330002-22330021 Msa0446510:CDS 45.0%
!! GCATCAAAAACGGTGTTGTG+TGG + chr3_3:22330113-22330132 None:intergenic 45.0%
GCGATGACCAATCAAACGTT+TGG + chr3_3:22330135-22330154 None:intergenic 45.0%
TAAGCAATAGCAGCTGCAGT+AGG + chr3_3:22330461-22330480 None:intergenic 45.0%
ACTGCAGCTGCTATTGCTTA+TGG - chr3_3:22330461-22330480 Msa0446510:CDS 45.0%
CTTGTCTTTGATCTTGGTGG+TGG - chr3_3:22330524-22330543 Msa0446510:CDS 45.0%
TCCTTAGTGACTGTTGACGA+AGG - chr3_3:22330560-22330579 Msa0446510:CDS 45.0%
TCCTTCGTCAACAGTCACTA+AGG + chr3_3:22330564-22330583 None:intergenic 45.0%
TGTTGACGAAGGAATGTTCC+AGG - chr3_3:22330571-22330590 Msa0446510:CDS 45.0%
CGAAGGAATGTTCCAGGTTA+AGG - chr3_3:22330577-22330596 Msa0446510:CDS 45.0%
! TTCCAGGTTAAGGCCACTTT+GGG - chr3_3:22330587-22330606 Msa0446510:CDS 45.0%
TTGGGAGATACTCATTTGGG+TGG - chr3_3:22330605-22330624 Msa0446510:CDS 45.0%
!! AGAATTCCAAAGCTTTGGGG+AGG - chr3_3:22330708-22330727 Msa0446510:CDS 45.0%
TCTTAACCTCCCCAAAGCTT+TGG + chr3_3:22330717-22330736 None:intergenic 45.0%
! AATGTTTTCTCCACAGCCCA+AGG - chr3_3:22331232-22331251 Msa0446510:CDS 45.0%
CAAAACAATACCTTGGGCTG+TGG + chr3_3:22331245-22331264 None:intergenic 45.0%
TTATCACCAACAAGGAGGGA+AGG - chr3_3:22331452-22331471 Msa0446510:CDS 45.0%
ATGAAATGAGGGAGAGAGTG+AGG - chr3_3:22331587-22331606 Msa0446510:CDS 45.0%
GAGAGTGAGGAAGCTTGAAA+AGG - chr3_3:22331600-22331619 Msa0446510:CDS 45.0%
GAGGAAGCTTGAAAAGGTAG+TGG - chr3_3:22331606-22331625 Msa0446510:CDS 45.0%
! GAAGCTTGAAAAGGTAGTGG+AGG - chr3_3:22331609-22331628 Msa0446510:CDS 45.0%
GCTACAGCTGTATTGCAGTG+TGG - chr3_3:22329964-22329983 Msa0446510:CDS 50.0%
CAACGTAAGAAGGGGTGACA+CGG + chr3_3:22330031-22330050 None:intergenic 50.0%
GGTGAAGGCAACGTAAGAAG+GGG + chr3_3:22330039-22330058 None:intergenic 50.0%
CGGTGAAGGCAACGTAAGAA+GGG + chr3_3:22330040-22330059 None:intergenic 50.0%
TCGGTGAAGGCAACGTAAGA+AGG + chr3_3:22330041-22330060 None:intergenic 50.0%
GTTCCAGGTTAAGGCCACTT+TGG - chr3_3:22330586-22330605 Msa0446510:CDS 50.0%
CAGCATGCGAGAAAGCAAAG+AGG - chr3_3:22330738-22330757 Msa0446510:CDS 50.0%
CCATAAGCCACAGCTTCATC+AGG + chr3_3:22331052-22331071 None:intergenic 50.0%
CCTGATGAAGCTGTGGCTTA+TGG - chr3_3:22331049-22331068 Msa0446510:CDS 50.0%
ACTCAACCTTCCCTCCTTGT+TGG + chr3_3:22331461-22331480 None:intergenic 50.0%
GAATGATGAGGGATTCCGAG+CGG - chr3_3:22331497-22331516 Msa0446510:CDS 50.0%
ATCCTCTGCCTTATACCGCT+CGG + chr3_3:22331515-22331534 None:intergenic 50.0%
GTATAAGGCAGAGGATGAGG+AGG - chr3_3:22331519-22331538 Msa0446510:CDS 50.0%
GGATGAGGAGGTTAGGAAGA+AGG - chr3_3:22331531-22331550 Msa0446510:CDS 50.0%
GCTACAGCTGTATTGCAGTG+TGG - chr3_3:22329964-22329983 Msa0446510:CDS 50.0%
CAACGTAAGAAGGGGTGACA+CGG + chr3_3:22330031-22330050 None:intergenic 50.0%
GGTGAAGGCAACGTAAGAAG+GGG + chr3_3:22330039-22330058 None:intergenic 50.0%
CGGTGAAGGCAACGTAAGAA+GGG + chr3_3:22330040-22330059 None:intergenic 50.0%
TCGGTGAAGGCAACGTAAGA+AGG + chr3_3:22330041-22330060 None:intergenic 50.0%
GTTCCAGGTTAAGGCCACTT+TGG - chr3_3:22330586-22330605 Msa0446510:CDS 50.0%
CAGCATGCGAGAAAGCAAAG+AGG - chr3_3:22330738-22330757 Msa0446510:CDS 50.0%
CCATAAGCCACAGCTTCATC+AGG + chr3_3:22331052-22331071 None:intergenic 50.0%
CCTGATGAAGCTGTGGCTTA+TGG - chr3_3:22331049-22331068 Msa0446510:CDS 50.0%
ACTCAACCTTCCCTCCTTGT+TGG + chr3_3:22331461-22331480 None:intergenic 50.0%
GAATGATGAGGGATTCCGAG+CGG - chr3_3:22331497-22331516 Msa0446510:CDS 50.0%
ATCCTCTGCCTTATACCGCT+CGG + chr3_3:22331515-22331534 None:intergenic 50.0%
GTATAAGGCAGAGGATGAGG+AGG - chr3_3:22331519-22331538 Msa0446510:CDS 50.0%
GGATGAGGAGGTTAGGAAGA+AGG - chr3_3:22331531-22331550 Msa0446510:CDS 50.0%
ACACGGTTCCCTTGGTCGTT+TGG + chr3_3:22330014-22330033 None:intergenic 55.0%
! CTCCCAAAGTGGCCTTAACC+TGG + chr3_3:22330592-22330611 None:intergenic 55.0%
GAGGGATTCCGAGCGGTATA+AGG - chr3_3:22331504-22331523 Msa0446510:CDS 55.0%
TTCCGAGCGGTATAAGGCAG+AGG - chr3_3:22331510-22331529 Msa0446510:CDS 55.0%
GCGGTATAAGGCAGAGGATG+AGG - chr3_3:22331516-22331535 Msa0446510:CDS 55.0%
AGGCAGAGGATGAGGAGGTT+AGG - chr3_3:22331524-22331543 Msa0446510:CDS 55.0%
ACACGGTTCCCTTGGTCGTT+TGG + chr3_3:22330014-22330033 None:intergenic 55.0%
! CTCCCAAAGTGGCCTTAACC+TGG + chr3_3:22330592-22330611 None:intergenic 55.0%
GAGGGATTCCGAGCGGTATA+AGG - chr3_3:22331504-22331523 Msa0446510:CDS 55.0%
TTCCGAGCGGTATAAGGCAG+AGG - chr3_3:22331510-22331529 Msa0446510:CDS 55.0%
GCGGTATAAGGCAGAGGATG+AGG - chr3_3:22331516-22331535 Msa0446510:CDS 55.0%
AGGCAGAGGATGAGGAGGTT+AGG - chr3_3:22331524-22331543 Msa0446510:CDS 55.0%
AAGGGGTGACACGGTTCCCT+TGG + chr3_3:22330022-22330041 None:intergenic 60.0%
AAGGGGTGACACGGTTCCCT+TGG + chr3_3:22330022-22330041 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 22329918 22331726 22329918 ID=Msa0446510;Name=Msa0446510
chr3_3 mRNA 22329918 22331726 22329918 ID=Msa0446510-mRNA-1;Parent=Msa0446510;Name=Msa0446510-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|602
chr3_3 exon 22329918 22331726 22329918 ID=Msa0446510-mRNA-1:exon:4605;Parent=Msa0446510-mRNA-1
chr3_3 CDS 22329918 22331726 22329918 ID=Msa0446510-mRNA-1:cds;Parent=Msa0446510-mRNA-1
Gene Sequence

>Msa0446510

ATGGCAACAAGAAAAAGCAAAGCCATAGGCATTGACCTTGGTACAAGCTACAGCTGTATTGCAGTGTGGCGAAACAATTGTGTTGAGATCATTCCAAACGACCAAGGGAACCGTGTCACCCCTTCTTACGTTGCCTTCACCGATACTGAAAGATTAATAGGTGATGCTGCCATAAACCAATCAGCCAAAAATCCACACAACACCGTTTTTGATGCCAAACGTTTGATTGGTCATCGCTTCTCTGACCAATCAGTCCAACAAGACATAAGGTTTTGGCCTTTTAAGGTTGTTCCAAACCACAAAGACAAACCCATGATTGTTGTCAATTACAAAGGCCAAGAAAAACATTTTTCTCCTCAAGAGATATCTTCCATGGTGTTGTCTAAATTAAAGGAAATTGCTGAAACTTATTTGGGTCATGATCATGAAGTGAACAAAGCTGTTATCACTGTTCCTGCTTACTTCAACAACTCACAGAGACAAGCTACAAAAGATGCAGGAAAAATTGCCGGTTTTAATGTGATGAGGATCATCAACGAGCCTACTGCAGCTGCTATTGCTTATGGTTTGGACAAGAAAATGTGGAGAGAAGGCGAGAAGAATGTTCTTGTCTTTGATCTTGGTGGTGGAACTTTTGATGTTTCCTTAGTGACTGTTGACGAAGGAATGTTCCAGGTTAAGGCCACTTTGGGAGATACTCATTTGGGTGGTGTTGATTTTGATAACAATTTGGTGAACCATCTTGTTGAATTATTTCATAGAAAGTACAAGAAGGATTTGAAGATCAGTGAGAATTCCAAAGCTTTGGGGAGGTTAAGATCAGCATGCGAGAAAGCAAAGAGGTTACTTTCTTCATCATCACAAACAGTTGTTGAGCTTGATTCACTATGTGAAGGGATTGATCTACATTTCACTGTTACTAGAGCTTTTTTTGAGGAAATAAACAAGGATTTGTTCAAAAAGTGCATGAAGACTGTGGAGAAGTGTTTGATTGAGGCAAAAATTAGTAAAAGCCAAGTTCATGAATTTGTTATTGTCGGAGGGTCTACTAGAATTCCGAAGATTCAACAACTACTGAAGGAAATGTTTAGTGTCAACGGCGAAGTCAAAGAGCCTTGCAAAAGCATTAATCCTGATGAAGCTGTGGCTTATGGCGCAGCAGTTCAAGCAGCAATATTGAATACTGAAGGAGACAAGAAGATTGAAGGCTTATTGCTGTTGGATGTTATGCCTTTTAGTCTTGGTGTTGAAACTAAAGGTGGTGTCATGTCTGTTTTGATTCCGAAGAATACTAGGATCCCTACAAAAAAGGAGAATGTTTTCTCCACAGCCCAAGGTATTGTTTTGATCAAAGTCTATGAAGGAGAACATGCTAAGACTAAGGACAACTTTTTGCTTGGTAAATTTGAGCTCTCAGAATGCTCTTTAGTACCTAGAAAGGTTCCAAATATCAATATTTGTTTTGATGTTGATGTTAATGGAATTTTGGAGGTTACTGCTGAAGATAAGACAAAAGGGTTGAAACAGAAGATCATTATCACCAACAAGGAGGGAAGGTTGAGTCCTCAAGAGATGAGAAGAATGATGAGGGATTCCGAGCGGTATAAGGCAGAGGATGAGGAGGTTAGGAAGAAGGTGAAAGCAAAGAATTTGTTTGAGAATTATGTTTATGAAATGAGGGAGAGAGTGAGGAAGCTTGAAAAGGTAGTGGAGGAAAGTATAGAATGGCTTGACAAAAACCAATTGGCAGAAATTGATGAGTTTGAATTCAAGAAGCAGGAGTTGGAAAATAGTGTGAAGTTTCTTTAA
Protein sequence

>Msa0446510

MATRKSKAIGIDLGTSYSCIAVWRNNCVEIIPNDQGNRVTPSYVAFTDTERLIGDAAINQSAKNPHNTVFDAKRLIGHRFSDQSVQQDIRFWPFKVVPNHKDKPMIVVNYKGQEKHFSPQEISSMVLSKLKEIAETYLGHDHEVNKAVITVPAYFNNSQRQATKDAGKIAGFNVMRIINEPTAAAIAYGLDKKMWREGEKNVLVFDLGGGTFDVSLVTVDEGMFQVKATLGDTHLGGVDFDNNLVNHLVELFHRKYKKDLKISENSKALGRLRSACEKAKRLLSSSSQTVVELDSLCEGIDLHFTVTRAFFEEINKDLFKKCMKTVEKCLIEAKISKSQVHEFVIVGGSTRIPKIQQLLKEMFSVNGEVKEPCKSINPDEAVAYGAAVQAAILNTEGDKKIEGLLLLDVMPFSLGVETKGGVMSVLIPKNTRIPTKKENVFSTAQGIVLIKVYEGEHAKTKDNFLLGKFELSECSLVPRKVPNINICFDVDVNGILEVTAEDKTKGLKQKIIITNKEGRLSPQEMRRMMRDSERYKAEDEEVRKKVKAKNLFENYVYEMRERVRKLEKVVEESIEWLDKNQLAEIDEFEFKKQELENSVKFL*