Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0251080 | ABN08189.1 | 100.000 | 89 | 0 | 0 | 1 | 89 | 348 | 436 | 4.65e-54 | 183 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0251080 | sp|F4IRU3|MYO12_ARATH | 64.634 | 82 | 29 | 0 | 1 | 82 | 1471 | 1552 | 2.76e-28 | 109 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0251080 | A2Q3J4 | 100.000 | 89 | 0 | 0 | 1 | 89 | 348 | 436 | 2.22e-54 | 183 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011500 | Msa0251080 | 0.803919 | 2.770168e-49 | -8.615850e-47 |
| Msa0022550 | Msa0251080 | 0.823559 | 1.298068e-53 | -8.615850e-47 |
| Msa0045790 | Msa0251080 | 0.805768 | 1.138251e-49 | -8.615850e-47 |
| Msa0046160 | Msa0251080 | 0.803224 | 3.861085e-49 | -8.615850e-47 |
| Msa0094850 | Msa0251080 | 0.808412 | 3.136191e-50 | -8.615850e-47 |
| Msa0097090 | Msa0251080 | 0.803245 | 3.822872e-49 | -8.615850e-47 |
| Msa0149300 | Msa0251080 | 0.800959 | 1.128126e-48 | -8.615850e-47 |
| Msa0187030 | Msa0251080 | 0.831477 | 1.632733e-55 | -8.615850e-47 |
| Msa0225100 | Msa0251080 | 0.800812 | 1.208806e-48 | -8.615850e-47 |
| Msa0251080 | Msa0254790 | 0.803726 | 3.038297e-49 | -8.615850e-47 |
| Msa0251080 | Msa0261340 | 0.807716 | 4.413037e-50 | -8.615850e-47 |
| Msa0251080 | Msa0272440 | 0.810621 | 1.052322e-50 | -8.615850e-47 |
| Msa0251080 | Msa0287740 | 0.812455 | 4.204119e-51 | -8.615850e-47 |
| Msa0251080 | Msa0297790 | 0.801601 | 8.338823e-49 | -8.615850e-47 |
| Msa0251080 | Msa0305700 | 0.804268 | 2.343370e-49 | -8.615850e-47 |
| Msa0251080 | Msa0312550 | 0.811324 | 7.411931e-51 | -8.615850e-47 |
| Msa0251080 | Msa0317730 | 0.817208 | 3.715516e-52 | -8.615850e-47 |
| Msa0251080 | Msa0358890 | 0.812804 | 3.525034e-51 | -8.615850e-47 |
| Msa0251080 | Msa0363200 | 0.815629 | 8.381573e-52 | -8.615850e-47 |
| Msa0251080 | Msa0367870 | 0.810376 | 1.188972e-50 | -8.615850e-47 |
| Msa0251080 | Msa0378720 | 0.814074 | 1.853845e-51 | -8.615850e-47 |
| Msa0251080 | Msa0405130 | 0.801886 | 7.286450e-49 | -8.615850e-47 |
| Msa0251080 | Msa0410650 | 0.809625 | 1.725436e-50 | -8.615850e-47 |
| Msa0251080 | Msa0417880 | 0.802179 | 6.341609e-49 | -8.615850e-47 |
| Msa0251080 | Msa0460480 | 0.801441 | 8.989515e-49 | -8.615850e-47 |
| Msa0251080 | Msa0467490 | 0.821157 | 4.686869e-53 | -8.615850e-47 |
| Msa0251080 | Msa0474730 | 0.803575 | 3.264591e-49 | -8.615850e-47 |
| Msa0251080 | Msa0479170 | 0.810186 | 1.306346e-50 | -8.615850e-47 |
| Msa0251080 | Msa0488790 | 0.802042 | 6.769656e-49 | -8.615850e-47 |
| Msa0251080 | Msa0498060 | 0.837493 | 5.032957e-57 | -8.615850e-47 |
| Msa0251080 | Msa0507680 | 0.815815 | 7.619232e-52 | -8.615850e-47 |
| Msa0251080 | Msa0557070 | 0.813094 | 3.045659e-51 | -8.615850e-47 |
| Msa0251080 | Msa0557320 | 0.806049 | 9.933074e-50 | -8.615850e-47 |
| Msa0251080 | Msa0579660 | 0.809021 | 2.324902e-50 | -8.615850e-47 |
| Msa0251080 | Msa0626450 | 0.805125 | 1.552414e-49 | -8.615850e-47 |
| Msa0251080 | Msa0626490 | 0.805579 | 1.246812e-49 | -8.615850e-47 |
| Msa0251080 | Msa0662340 | 0.811163 | 8.032730e-51 | -8.615850e-47 |
| Msa0251080 | Msa0664600 | 0.805719 | 1.165573e-49 | -8.615850e-47 |
| Msa0251080 | Msa0682330 | 0.809648 | 1.705811e-50 | -8.615850e-47 |
| Msa0251080 | Msa0710270 | 0.813179 | 2.917390e-51 | -8.615850e-47 |
| Msa0251080 | Msa0727640 | 0.845098 | 5.020112e-59 | -8.615850e-47 |
| Msa0251080 | Msa0751260 | 0.800899 | 1.160460e-48 | -8.615850e-47 |
| Msa0251080 | Msa0767300 | 0.831927 | 1.264271e-55 | -8.615850e-47 |
| Msa0251080 | Msa0768990 | 0.804145 | 2.485689e-49 | -8.615850e-47 |
| Msa0251080 | Msa0795070 | 0.831136 | 1.980246e-55 | -8.615850e-47 |
| Msa0251080 | Msa0828560 | 0.827178 | 1.805922e-54 | -8.615850e-47 |
| Msa0251080 | Msa0834880 | 0.815197 | 1.045953e-51 | -8.615850e-47 |
| Msa0251080 | Msa0861510 | 0.804118 | 2.518173e-49 | -8.615850e-47 |
| Msa0251080 | Msa0861530 | 0.804200 | 2.421645e-49 | -8.615850e-47 |
| Msa0251080 | Msa0861600 | 0.808983 | 2.368494e-50 | -8.615850e-47 |
| Msa0251080 | Msa0866520 | 0.827448 | 1.555644e-54 | -8.615850e-47 |
| Msa0251080 | Msa0870550 | 0.800091 | 1.695491e-48 | -8.615850e-47 |
| Msa0251080 | Msa0898750 | 0.812523 | 4.062053e-51 | -8.615850e-47 |
| Msa0251080 | Msa0903690 | 0.806169 | 9.370482e-50 | -8.615850e-47 |
| Msa0251080 | Msa0926890 | 0.807782 | 4.272036e-50 | -8.615850e-47 |
| Msa0251080 | Msa0928130 | 0.813443 | 2.553441e-51 | -8.615850e-47 |
| Msa0251080 | Msa0964310 | 0.825565 | 4.373769e-54 | -8.615850e-47 |
| Msa0251080 | Msa0967870 | 0.813928 | 1.996222e-51 | -8.615850e-47 |
| Msa0251080 | Msa0981850 | 0.806357 | 8.557511e-50 | -8.615850e-47 |
| Msa0251080 | Msa1004840 | 0.802275 | 6.060968e-49 | -8.615850e-47 |
| Msa0251080 | Msa1019000 | 0.818109 | 2.327215e-52 | -8.615850e-47 |
| Msa0251080 | Msa1019470 | 0.808539 | 2.946627e-50 | -8.615850e-47 |
| Msa0251080 | Msa1024740 | 0.815817 | 7.610000e-52 | -8.615850e-47 |
| Msa0251080 | Msa1031930 | 0.828337 | 9.506700e-55 | -8.615850e-47 |
| Msa0251080 | Msa1035960 | 0.818846 | 1.583888e-52 | -8.615850e-47 |
| Msa0251080 | Msa1043370 | 0.804010 | 2.651942e-49 | -8.615850e-47 |
| Msa0251080 | Msa1063500 | 0.815664 | 8.232053e-52 | -8.615850e-47 |
| Msa0251080 | Msa1085200 | 0.811319 | 7.428886e-51 | -8.615850e-47 |
| Msa0251080 | Msa1102770 | 0.817445 | 3.285709e-52 | -8.615850e-47 |
| Msa0251080 | Msa1108160 | 0.816211 | 6.214992e-52 | -8.615850e-47 |
| Msa0251080 | Msa1108790 | 0.828256 | 9.949108e-55 | -8.615850e-47 |
| Msa0251080 | Msa1122520 | 0.816893 | 4.372555e-52 | -8.615850e-47 |
| Msa0251080 | Msa1125940 | 0.808698 | 2.725710e-50 | -8.615850e-47 |
| Msa0251080 | Msa1145810 | 0.811931 | 5.468837e-51 | -8.615850e-47 |
| Msa0251080 | Msa1152510 | 0.824805 | 6.614313e-54 | -8.615850e-47 |
| Msa0251080 | Msa1158830 | 0.804930 | 1.705460e-49 | -8.615850e-47 |
| Msa0251080 | Msa1199570 | 0.810186 | 1.306346e-50 | -8.615850e-47 |
| Msa0251080 | Msa1209460 | 0.800828 | 1.200181e-48 | -8.615850e-47 |
| Msa0251080 | Msa1298370 | 0.822071 | 2.882083e-53 | -8.615850e-47 |
| Msa0251080 | Msa1307210 | 0.812581 | 3.945092e-51 | -8.615850e-47 |
| Msa0251080 | Msa1328710 | 0.813752 | 2.182719e-51 | -8.615850e-47 |
| Msa0251080 | Msa1341520 | 0.803222 | 3.863461e-49 | -8.615850e-47 |
| Msa0251080 | Msa1368430 | 0.807613 | 4.641122e-50 | -8.615850e-47 |
| Msa0251080 | Msa1383230 | 0.803003 | 4.288620e-49 | -8.615850e-47 |
| Msa0251080 | Msa1386040 | 0.820087 | 8.254576e-53 | -8.615850e-47 |
| Msa0251080 | Msa1460020 | 0.802782 | 4.763918e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0251080 | MtrunA17_Chr2g0309291 | 100.000 | 89 | 0 | 0 | 1 | 89 | 1494 | 1582 | 1.36e-55 | 184 |
| Msa0251080 | MtrunA17_Chr7g0274381 | 55.294 | 85 | 36 | 1 | 1 | 85 | 131 | 213 | 1.78e-25 | 94.0 |
| Msa0251080 | MtrunA17_Chr4g0070771 | 48.148 | 81 | 40 | 1 | 1 | 81 | 1448 | 1526 | 2.36e-22 | 89.4 |
| Msa0251080 | MtrunA17_Chr1g0151061 | 40.964 | 83 | 47 | 1 | 1 | 83 | 1434 | 1514 | 1.01e-14 | 67.8 |
| Msa0251080 | MtrunA17_Chr1g0183001 | 43.750 | 80 | 43 | 1 | 1 | 80 | 1434 | 1511 | 3.80e-14 | 65.9 |
| Msa0251080 | MtrunA17_Chr7g0262581 | 41.463 | 82 | 44 | 2 | 1 | 82 | 1433 | 1510 | 9.97e-14 | 64.7 |
| Msa0251080 | MtrunA17_Chr3g0136351 | 37.349 | 83 | 50 | 1 | 1 | 83 | 352 | 432 | 2.41e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0251080 | AT2G31900.4 | 64.634 | 82 | 29 | 0 | 1 | 82 | 1471 | 1552 | 2.80e-29 | 109 |
| Msa0251080 | AT2G31900.1 | 64.634 | 82 | 29 | 0 | 1 | 82 | 1471 | 1552 | 2.80e-29 | 109 |
| Msa0251080 | AT2G31900.2 | 64.634 | 82 | 29 | 0 | 1 | 82 | 1472 | 1553 | 2.80e-29 | 109 |
| Msa0251080 | AT2G31900.5 | 64.634 | 82 | 29 | 0 | 1 | 82 | 1357 | 1438 | 3.71e-29 | 108 |
| Msa0251080 | AT2G31900.3 | 64.634 | 82 | 29 | 0 | 1 | 82 | 1214 | 1295 | 5.35e-29 | 108 |
| Msa0251080 | AT1G54560.2 | 59.259 | 81 | 31 | 1 | 1 | 81 | 1444 | 1522 | 9.37e-27 | 102 |
| Msa0251080 | AT1G54560.1 | 59.259 | 81 | 31 | 1 | 1 | 81 | 1447 | 1525 | 1.07e-26 | 102 |
| Msa0251080 | AT1G08730.2 | 56.790 | 81 | 33 | 1 | 1 | 81 | 1448 | 1526 | 1.65e-26 | 101 |
| Msa0251080 | AT1G08730.1 | 56.790 | 81 | 33 | 1 | 1 | 81 | 1456 | 1534 | 1.70e-26 | 101 |
| Msa0251080 | AT5G20490.1 | 51.852 | 81 | 37 | 1 | 1 | 81 | 1444 | 1522 | 2.35e-24 | 95.5 |
| Msa0251080 | AT5G20490.2 | 51.852 | 81 | 37 | 1 | 1 | 81 | 1445 | 1523 | 2.37e-24 | 95.5 |
| Msa0251080 | AT5G20490.3 | 51.852 | 81 | 37 | 1 | 1 | 81 | 1379 | 1457 | 3.05e-24 | 95.1 |
| Msa0251080 | AT1G17580.1 | 44.706 | 85 | 45 | 1 | 1 | 85 | 1438 | 1520 | 3.77e-21 | 86.3 |
| Msa0251080 | AT5G20470.1 | 46.250 | 80 | 41 | 1 | 2 | 81 | 471 | 548 | 2.16e-19 | 81.3 |
| Msa0251080 | AT4G28710.1 | 44.444 | 81 | 43 | 1 | 1 | 81 | 1438 | 1516 | 9.29e-16 | 70.9 |
| Msa0251080 | AT1G04160.1 | 43.750 | 80 | 43 | 1 | 1 | 80 | 1422 | 1499 | 4.71e-14 | 66.2 |
| Msa0251080 | AT4G33200.2 | 39.024 | 82 | 48 | 1 | 1 | 82 | 1401 | 1480 | 7.02e-14 | 65.5 |
| Msa0251080 | AT4G33200.3 | 39.024 | 82 | 48 | 1 | 1 | 82 | 1412 | 1491 | 7.45e-14 | 65.5 |
| Msa0251080 | AT4G33200.4 | 39.024 | 82 | 48 | 1 | 1 | 82 | 1432 | 1511 | 7.90e-14 | 65.5 |
| Msa0251080 | AT4G33200.1 | 39.024 | 82 | 48 | 1 | 1 | 82 | 1431 | 1510 | 7.98e-14 | 65.5 |
Find 37 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTAATTCCTCAATCTATT+AGG | 0.228399 | 2_2:+40273408 | Msa0251080:five_prime_UTR |
| ATTCAGCATTCCATTCTTAA+TGG | 0.255563 | 2_2:+40274082 | Msa0251080:intron |
| ATTGTAAGGCTTCTAATTAA+AGG | 0.266267 | 2_2:+40274413 | Msa0251080:three_prime_UTR |
| CAATGTGCTGCAACAAGAAT+TGG | 0.312347 | 2_2:-40274190 | None:intergenic |
| GGAAATCAGATCTTTGTCTA+AGG | 0.324833 | 2_2:-40274169 | None:intergenic |
| TTTATCTGAATCACATGTTT+GGG | 0.331195 | 2_2:+40273344 | Msa0251080:five_prime_UTR |
| AATGAAATGAAGGAATGTTT+TGG | 0.337579 | 2_2:+40274476 | Msa0251080:three_prime_UTR |
| TTATTGATTTAATTTGGGTT+TGG | 0.360559 | 2_2:+40274282 | Msa0251080:three_prime_UTR |
| CGACATTCGAATATCAGATA+TGG | 0.380121 | 2_2:+40274127 | Msa0251080:CDS |
| TCAGTAAGCTAGTGAAAGTT+TGG | 0.380593 | 2_2:+40274223 | Msa0251080:exon |
| ATCGCATTGGAACTATGTTC+TGG | 0.383332 | 2_2:+40273452 | Msa0251080:exon |
| GGAATTAAACAAGAAATGAT+AGG | 0.395626 | 2_2:-40273395 | None:intergenic |
| ACCTAGATTCCACTTCTAGA+AGG | 0.396405 | 2_2:-40273929 | None:intergenic |
| ATGTTCTGGGATGACAAGTA+TGG | 0.406498 | 2_2:+40273466 | Msa0251080:CDS |
| GATCTTTGTCTAAGGATTGT+TGG | 0.409989 | 2_2:-40274161 | None:intergenic |
| GTTCCAATGCGATATATTTG+TGG | 0.450899 | 2_2:-40273442 | None:intergenic |
| TCTTAATGGAGGAGTTGTTC+CGG | 0.452454 | 2_2:+40274096 | Msa0251080:CDS |
| TTCGAATGTCGCTCATGGAC+CGG | 0.452829 | 2_2:-40274115 | None:intergenic |
| TCCTTCTAGAAGTGGAATCT+AGG | 0.455257 | 2_2:+40273928 | Msa0251080:CDS |
| GACATAACACTTCAAATTGA+AGG | 0.462153 | 2_2:-40273311 | None:intergenic |
| TCGCATTGGAACTATGTTCT+GGG | 0.487070 | 2_2:+40273453 | Msa0251080:exon |
| AACAACTCCTCCATTAAGAA+TGG | 0.492101 | 2_2:-40274092 | None:intergenic |
| GTTATAAAGAAATGAAATGA+AGG | 0.502950 | 2_2:+40274466 | Msa0251080:three_prime_UTR |
| TGATATTCGAATGTCGCTCA+TGG | 0.518642 | 2_2:-40274120 | None:intergenic |
| TAACTCATTCCTTCTAGAAG+TGG | 0.522797 | 2_2:+40273920 | Msa0251080:CDS |
| CTTTGTCTAAGGATTGTTGG+TGG | 0.529312 | 2_2:-40274158 | None:intergenic |
| CTGAATCACATGTTTGGGAA+AGG | 0.538305 | 2_2:+40273349 | Msa0251080:five_prime_UTR |
| CAAGAAATGATAGGTTACAT+TGG | 0.545460 | 2_2:-40273386 | None:intergenic |
| CAGCATTCCATTCTTAATGG+AGG | 0.556613 | 2_2:+40274085 | Msa0251080:intron |
| ATTCCACAAATATATCGCAT+TGG | 0.560243 | 2_2:+40273439 | Msa0251080:five_prime_UTR |
| TCGAATATCAGATATGGATG+TGG | 0.572038 | 2_2:+40274133 | Msa0251080:CDS |
| ACTTAACACCTAATAGATTG+AGG | 0.577567 | 2_2:-40273416 | None:intergenic |
| AATCACATGTTTGGGAAAGG+AGG | 0.594455 | 2_2:+40273352 | Msa0251080:five_prime_UTR |
| GATTTAATTTGGGTTTGGTG+AGG | 0.610725 | 2_2:+40274287 | Msa0251080:three_prime_UTR |
| GATGACAAGTATGGAACACA+AGG | 0.684250 | 2_2:+40273475 | Msa0251080:CDS |
| GTGAGAGTGATTCAATTGTG+AGG | 0.717424 | 2_2:+40274309 | Msa0251080:three_prime_UTR |
| AACATTGTCGAAATTCACTG+TGG | 0.777985 | 2_2:-40274436 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTTTTTATTGATTTAATT+TGG | + | chr2_2:40274276-40274295 | Msa0251080:three_prime_UTR | 10.0% |
| !!! | TTTATTTTGAAATTATTGTA+AGG | + | chr2_2:40274399-40274418 | Msa0251080:three_prime_UTR | 10.0% |
| !!! | GATTTTTTATTGATTTAATT+TGG | + | chr2_2:40274276-40274295 | Msa0251080:three_prime_UTR | 10.0% |
| !!! | TTTATTTTGAAATTATTGTA+AGG | + | chr2_2:40274399-40274418 | Msa0251080:three_prime_UTR | 10.0% |
| !! | AAAAAATAATAATCAAAGTG+AGG | - | chr2_2:40273843-40273862 | None:intergenic | 15.0% |
| !!! | CTTTGATTATTATTTTTTAC+AGG | + | chr2_2:40273845-40273864 | Msa0251080:intron | 15.0% |
| !! | TTAGGAAAAATTGTTTATTT+AGG | - | chr2_2:40274030-40274049 | None:intergenic | 15.0% |
| !! | AAAAAATAATAATCAAAGTG+AGG | - | chr2_2:40273843-40273862 | None:intergenic | 15.0% |
| !!! | CTTTGATTATTATTTTTTAC+AGG | + | chr2_2:40273845-40273864 | Msa0251080:intron | 15.0% |
| !! | TTAGGAAAAATTGTTTATTT+AGG | - | chr2_2:40274030-40274049 | None:intergenic | 15.0% |
| !! | TAAATATTATTGAGGAGATA+AGG | - | chr2_2:40273520-40273539 | None:intergenic | 20.0% |
| !!! | TTATTGATTTAATTTGGGTT+TGG | + | chr2_2:40274282-40274301 | Msa0251080:three_prime_UTR | 20.0% |
| !! | GTTATAAAGAAATGAAATGA+AGG | + | chr2_2:40274466-40274485 | Msa0251080:three_prime_UTR | 20.0% |
| !! | TAAATATTATTGAGGAGATA+AGG | - | chr2_2:40273520-40273539 | None:intergenic | 20.0% |
| !!! | TTATTGATTTAATTTGGGTT+TGG | + | chr2_2:40274282-40274301 | Msa0251080:three_prime_UTR | 20.0% |
| !! | GTTATAAAGAAATGAAATGA+AGG | + | chr2_2:40274466-40274485 | Msa0251080:three_prime_UTR | 20.0% |
| !! | TTTTATCTGAATCACATGTT+TGG | + | chr2_2:40273343-40273362 | Msa0251080:five_prime_UTR | 25.0% |
| ! | TTTATCTGAATCACATGTTT+GGG | + | chr2_2:40273344-40273363 | Msa0251080:five_prime_UTR | 25.0% |
| ! | GGAATTAAACAAGAAATGAT+AGG | - | chr2_2:40273398-40273417 | None:intergenic | 25.0% |
| ! | GTTTAATTCCTCAATCTATT+AGG | + | chr2_2:40273408-40273427 | Msa0251080:five_prime_UTR | 25.0% |
| ! | AGCAAAGGTAAATATTATTG+AGG | - | chr2_2:40273528-40273547 | None:intergenic | 25.0% |
| ! | AATTTCAACATGCATTACAT+AGG | + | chr2_2:40273716-40273735 | Msa0251080:intron | 25.0% |
| ! | AAAAGGAAAGAAAAAATTGG+AGG | - | chr2_2:40273820-40273839 | None:intergenic | 25.0% |
| ! | AGGAAAAGGAAAGAAAAAAT+TGG | - | chr2_2:40273823-40273842 | None:intergenic | 25.0% |
| ! | TAATAATCAAAGTGAGGAAA+AGG | - | chr2_2:40273837-40273856 | None:intergenic | 25.0% |
| ! | TAAAGTAGGGAAAATCAAAA+TGG | - | chr2_2:40273981-40274000 | None:intergenic | 25.0% |
| ! | TAGAACTTGAATGTAAAGTA+GGG | - | chr2_2:40273994-40274013 | None:intergenic | 25.0% |
| ! | TTAGAACTTGAATGTAAAGT+AGG | - | chr2_2:40273995-40274014 | None:intergenic | 25.0% |
| ! | ATTGTAAGGCTTCTAATTAA+AGG | + | chr2_2:40274413-40274432 | Msa0251080:three_prime_UTR | 25.0% |
| !! | AATGAAATGAAGGAATGTTT+TGG | + | chr2_2:40274476-40274495 | Msa0251080:three_prime_UTR | 25.0% |
| !! | TTTTATCTGAATCACATGTT+TGG | + | chr2_2:40273343-40273362 | Msa0251080:five_prime_UTR | 25.0% |
| ! | TTTATCTGAATCACATGTTT+GGG | + | chr2_2:40273344-40273363 | Msa0251080:five_prime_UTR | 25.0% |
| ! | GGAATTAAACAAGAAATGAT+AGG | - | chr2_2:40273398-40273417 | None:intergenic | 25.0% |
| ! | GTTTAATTCCTCAATCTATT+AGG | + | chr2_2:40273408-40273427 | Msa0251080:five_prime_UTR | 25.0% |
| ! | AGCAAAGGTAAATATTATTG+AGG | - | chr2_2:40273528-40273547 | None:intergenic | 25.0% |
| ! | AATTTCAACATGCATTACAT+AGG | + | chr2_2:40273716-40273735 | Msa0251080:intron | 25.0% |
| ! | AAAAGGAAAGAAAAAATTGG+AGG | - | chr2_2:40273820-40273839 | None:intergenic | 25.0% |
| ! | AGGAAAAGGAAAGAAAAAAT+TGG | - | chr2_2:40273823-40273842 | None:intergenic | 25.0% |
| ! | TAATAATCAAAGTGAGGAAA+AGG | - | chr2_2:40273837-40273856 | None:intergenic | 25.0% |
| ! | TAAAGTAGGGAAAATCAAAA+TGG | - | chr2_2:40273981-40274000 | None:intergenic | 25.0% |
| ! | TAGAACTTGAATGTAAAGTA+GGG | - | chr2_2:40273994-40274013 | None:intergenic | 25.0% |
| ! | TTAGAACTTGAATGTAAAGT+AGG | - | chr2_2:40273995-40274014 | None:intergenic | 25.0% |
| ! | ATTGTAAGGCTTCTAATTAA+AGG | + | chr2_2:40274413-40274432 | Msa0251080:three_prime_UTR | 25.0% |
| !! | AATGAAATGAAGGAATGTTT+TGG | + | chr2_2:40274476-40274495 | Msa0251080:three_prime_UTR | 25.0% |
| GACATAACACTTCAAATTGA+AGG | - | chr2_2:40273314-40273333 | None:intergenic | 30.0% | |
| CAAGAAATGATAGGTTACAT+TGG | - | chr2_2:40273389-40273408 | None:intergenic | 30.0% | |
| ACTTAACACCTAATAGATTG+AGG | - | chr2_2:40273419-40273438 | None:intergenic | 30.0% | |
| ATTCCACAAATATATCGCAT+TGG | + | chr2_2:40273439-40273458 | Msa0251080:five_prime_UTR | 30.0% | |
| GGTATTCTCTGTTGAATTTA+GGG | - | chr2_2:40273694-40273713 | None:intergenic | 30.0% | |
| AGGTATTCTCTGTTGAATTT+AGG | - | chr2_2:40273695-40273714 | None:intergenic | 30.0% | |
| TGTAATGCATGTTGAAATTG+AGG | - | chr2_2:40273715-40273734 | None:intergenic | 30.0% | |
| GGGAAAATCAAAATGGATAT+AGG | - | chr2_2:40273974-40273993 | None:intergenic | 30.0% | |
| ATTCAGCATTCCATTCTTAA+TGG | + | chr2_2:40274082-40274101 | Msa0251080:intron | 30.0% | |
| GACATAACACTTCAAATTGA+AGG | - | chr2_2:40273314-40273333 | None:intergenic | 30.0% | |
| CAAGAAATGATAGGTTACAT+TGG | - | chr2_2:40273389-40273408 | None:intergenic | 30.0% | |
| ACTTAACACCTAATAGATTG+AGG | - | chr2_2:40273419-40273438 | None:intergenic | 30.0% | |
| ATTCCACAAATATATCGCAT+TGG | + | chr2_2:40273439-40273458 | Msa0251080:five_prime_UTR | 30.0% | |
| GGTATTCTCTGTTGAATTTA+GGG | - | chr2_2:40273694-40273713 | None:intergenic | 30.0% | |
| AGGTATTCTCTGTTGAATTT+AGG | - | chr2_2:40273695-40273714 | None:intergenic | 30.0% | |
| TGTAATGCATGTTGAAATTG+AGG | - | chr2_2:40273715-40273734 | None:intergenic | 30.0% | |
| GGGAAAATCAAAATGGATAT+AGG | - | chr2_2:40273974-40273993 | None:intergenic | 30.0% | |
| ATTCAGCATTCCATTCTTAA+TGG | + | chr2_2:40274082-40274101 | Msa0251080:intron | 30.0% | |
| GTTCCAATGCGATATATTTG+TGG | - | chr2_2:40273445-40273464 | None:intergenic | 35.0% | |
| ! | GATTCATGATAATGCAGCAA+AGG | - | chr2_2:40273543-40273562 | None:intergenic | 35.0% |
| !! | TGAATTTAGGGTTAGTTGCA+TGG | - | chr2_2:40273682-40273701 | None:intergenic | 35.0% |
| ! | TGGAGGATTTTTACTGCATT+TGG | - | chr2_2:40273803-40273822 | None:intergenic | 35.0% |
| ! | TAACTCATTCCTTCTAGAAG+TGG | + | chr2_2:40273920-40273939 | Msa0251080:CDS | 35.0% |
| !! | AAGTGCAATAGCTTTGTGTT+AGG | - | chr2_2:40274048-40274067 | None:intergenic | 35.0% |
| ! | GGAATGCTGAATTTTGTGTA+AGG | - | chr2_2:40274074-40274093 | None:intergenic | 35.0% |
| AACAACTCCTCCATTAAGAA+TGG | - | chr2_2:40274095-40274114 | None:intergenic | 35.0% | |
| CGACATTCGAATATCAGATA+TGG | + | chr2_2:40274127-40274146 | Msa0251080:CDS | 35.0% | |
| TCGAATATCAGATATGGATG+TGG | + | chr2_2:40274133-40274152 | Msa0251080:CDS | 35.0% | |
| GATCTTTGTCTAAGGATTGT+TGG | - | chr2_2:40274164-40274183 | None:intergenic | 35.0% | |
| GGAAATCAGATCTTTGTCTA+AGG | - | chr2_2:40274172-40274191 | None:intergenic | 35.0% | |
| TCAGTAAGCTAGTGAAAGTT+TGG | + | chr2_2:40274223-40274242 | Msa0251080:exon | 35.0% | |
| !! | GATTTAATTTGGGTTTGGTG+AGG | + | chr2_2:40274287-40274306 | Msa0251080:three_prime_UTR | 35.0% |
| AACATTGTCGAAATTCACTG+TGG | - | chr2_2:40274439-40274458 | None:intergenic | 35.0% | |
| GTTCCAATGCGATATATTTG+TGG | - | chr2_2:40273445-40273464 | None:intergenic | 35.0% | |
| ! | GATTCATGATAATGCAGCAA+AGG | - | chr2_2:40273543-40273562 | None:intergenic | 35.0% |
| !! | TGAATTTAGGGTTAGTTGCA+TGG | - | chr2_2:40273682-40273701 | None:intergenic | 35.0% |
| ! | TGGAGGATTTTTACTGCATT+TGG | - | chr2_2:40273803-40273822 | None:intergenic | 35.0% |
| ! | TAACTCATTCCTTCTAGAAG+TGG | + | chr2_2:40273920-40273939 | Msa0251080:CDS | 35.0% |
| !! | AAGTGCAATAGCTTTGTGTT+AGG | - | chr2_2:40274048-40274067 | None:intergenic | 35.0% |
| ! | GGAATGCTGAATTTTGTGTA+AGG | - | chr2_2:40274074-40274093 | None:intergenic | 35.0% |
| AACAACTCCTCCATTAAGAA+TGG | - | chr2_2:40274095-40274114 | None:intergenic | 35.0% | |
| CGACATTCGAATATCAGATA+TGG | + | chr2_2:40274127-40274146 | Msa0251080:CDS | 35.0% | |
| TCGAATATCAGATATGGATG+TGG | + | chr2_2:40274133-40274152 | Msa0251080:CDS | 35.0% | |
| GATCTTTGTCTAAGGATTGT+TGG | - | chr2_2:40274164-40274183 | None:intergenic | 35.0% | |
| GGAAATCAGATCTTTGTCTA+AGG | - | chr2_2:40274172-40274191 | None:intergenic | 35.0% | |
| TCAGTAAGCTAGTGAAAGTT+TGG | + | chr2_2:40274223-40274242 | Msa0251080:exon | 35.0% | |
| !! | GATTTAATTTGGGTTTGGTG+AGG | + | chr2_2:40274287-40274306 | Msa0251080:three_prime_UTR | 35.0% |
| AACATTGTCGAAATTCACTG+TGG | - | chr2_2:40274439-40274458 | None:intergenic | 35.0% | |
| CTGAATCACATGTTTGGGAA+AGG | + | chr2_2:40273349-40273368 | Msa0251080:five_prime_UTR | 40.0% | |
| AATCACATGTTTGGGAAAGG+AGG | + | chr2_2:40273352-40273371 | Msa0251080:five_prime_UTR | 40.0% | |
| ATCGCATTGGAACTATGTTC+TGG | + | chr2_2:40273452-40273471 | Msa0251080:exon | 40.0% | |
| TCGCATTGGAACTATGTTCT+GGG | + | chr2_2:40273453-40273472 | Msa0251080:exon | 40.0% | |
| !! | ATGTTCTGGGATGACAAGTA+TGG | + | chr2_2:40273466-40273485 | Msa0251080:CDS | 40.0% |
| GATGACAAGTATGGAACACA+AGG | + | chr2_2:40273475-40273494 | Msa0251080:CDS | 40.0% | |
| AGGAGATAAGGACTTACATC+TGG | - | chr2_2:40273508-40273527 | None:intergenic | 40.0% | |
| ! | TCCTTCTAGAAGTGGAATCT+AGG | + | chr2_2:40273928-40273947 | Msa0251080:CDS | 40.0% |
| ACCTAGATTCCACTTCTAGA+AGG | - | chr2_2:40273932-40273951 | None:intergenic | 40.0% | |
| CAGCATTCCATTCTTAATGG+AGG | + | chr2_2:40274085-40274104 | Msa0251080:intron | 40.0% | |
| TCTTAATGGAGGAGTTGTTC+CGG | + | chr2_2:40274096-40274115 | Msa0251080:CDS | 40.0% | |
| TGATATTCGAATGTCGCTCA+TGG | - | chr2_2:40274123-40274142 | None:intergenic | 40.0% | |
| CTTTGTCTAAGGATTGTTGG+TGG | - | chr2_2:40274161-40274180 | None:intergenic | 40.0% | |
| CAATGTGCTGCAACAAGAAT+TGG | - | chr2_2:40274193-40274212 | None:intergenic | 40.0% | |
| GTGAGAGTGATTCAATTGTG+AGG | + | chr2_2:40274309-40274328 | Msa0251080:three_prime_UTR | 40.0% | |
| CTGAATCACATGTTTGGGAA+AGG | + | chr2_2:40273349-40273368 | Msa0251080:five_prime_UTR | 40.0% | |
| AATCACATGTTTGGGAAAGG+AGG | + | chr2_2:40273352-40273371 | Msa0251080:five_prime_UTR | 40.0% | |
| ATCGCATTGGAACTATGTTC+TGG | + | chr2_2:40273452-40273471 | Msa0251080:exon | 40.0% | |
| TCGCATTGGAACTATGTTCT+GGG | + | chr2_2:40273453-40273472 | Msa0251080:exon | 40.0% | |
| !! | ATGTTCTGGGATGACAAGTA+TGG | + | chr2_2:40273466-40273485 | Msa0251080:CDS | 40.0% |
| GATGACAAGTATGGAACACA+AGG | + | chr2_2:40273475-40273494 | Msa0251080:CDS | 40.0% | |
| AGGAGATAAGGACTTACATC+TGG | - | chr2_2:40273508-40273527 | None:intergenic | 40.0% | |
| ! | TCCTTCTAGAAGTGGAATCT+AGG | + | chr2_2:40273928-40273947 | Msa0251080:CDS | 40.0% |
| ACCTAGATTCCACTTCTAGA+AGG | - | chr2_2:40273932-40273951 | None:intergenic | 40.0% | |
| CAGCATTCCATTCTTAATGG+AGG | + | chr2_2:40274085-40274104 | Msa0251080:intron | 40.0% | |
| TCTTAATGGAGGAGTTGTTC+CGG | + | chr2_2:40274096-40274115 | Msa0251080:CDS | 40.0% | |
| TGATATTCGAATGTCGCTCA+TGG | - | chr2_2:40274123-40274142 | None:intergenic | 40.0% | |
| CTTTGTCTAAGGATTGTTGG+TGG | - | chr2_2:40274161-40274180 | None:intergenic | 40.0% | |
| CAATGTGCTGCAACAAGAAT+TGG | - | chr2_2:40274193-40274212 | None:intergenic | 40.0% | |
| GTGAGAGTGATTCAATTGTG+AGG | + | chr2_2:40274309-40274328 | Msa0251080:three_prime_UTR | 40.0% | |
| CGAGATACAACTTGCATGTG+CGG | + | chr2_2:40273642-40273661 | Msa0251080:intron | 45.0% | |
| CGAGATACAACTTGCATGTG+CGG | + | chr2_2:40273642-40273661 | Msa0251080:intron | 45.0% | |
| !!! | ATTTTTTATTGATTTAATTT+GGG | + | chr2_2:40274277-40274296 | Msa0251080:three_prime_UTR | 5.0% |
| !!! | ATTTTTTATTGATTTAATTT+GGG | + | chr2_2:40274277-40274296 | Msa0251080:three_prime_UTR | 5.0% |
| TTCGAATGTCGCTCATGGAC+CGG | - | chr2_2:40274118-40274137 | None:intergenic | 50.0% | |
| TTCGAATGTCGCTCATGGAC+CGG | - | chr2_2:40274118-40274137 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 40273304 | 40274504 | 40273304 | ID=Msa0251080;Name=Msa0251080 |
| chr2_2 | mRNA | 40273304 | 40274504 | 40273304 | ID=Msa0251080-mRNA-1;Parent=Msa0251080;Name=Msa0251080-mRNA-1;_AED=0.00;_eAED=0.00;_QI=162|1|1|1|1|1|3|275|89 |
| chr2_2 | exon | 40273304 | 40273510 | 40273304 | ID=Msa0251080-mRNA-1:exon:12503;Parent=Msa0251080-mRNA-1 |
| chr2_2 | exon | 40273867 | 40273949 | 40273867 | ID=Msa0251080-mRNA-1:exon:12504;Parent=Msa0251080-mRNA-1 |
| chr2_2 | exon | 40274088 | 40274504 | 40274088 | ID=Msa0251080-mRNA-1:exon:12505;Parent=Msa0251080-mRNA-1 |
| chr2_2 | five_prime_UTR | 40273304 | 40273465 | 40273304 | ID=Msa0251080-mRNA-1:five_prime_utr;Parent=Msa0251080-mRNA-1 |
| chr2_2 | CDS | 40273466 | 40273510 | 40273466 | ID=Msa0251080-mRNA-1:cds;Parent=Msa0251080-mRNA-1 |
| chr2_2 | CDS | 40273867 | 40273949 | 40273867 | ID=Msa0251080-mRNA-1:cds;Parent=Msa0251080-mRNA-1 |
| chr2_2 | CDS | 40274088 | 40274229 | 40274088 | ID=Msa0251080-mRNA-1:cds;Parent=Msa0251080-mRNA-1 |
| chr2_2 | three_prime_UTR | 40274230 | 40274504 | 40274230 | ID=Msa0251080-mRNA-1:three_prime_utr;Parent=Msa0251080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
