AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1063500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1063500 MtrunA17_Chr7g0242701 91.101 427 7 2 1 396 1 427 0.0 793
Msa1063500 MtrunA17_Chr4g0006991 73.302 427 83 2 1 396 1 427 0.0 639
Msa1063500 MtrunA17_Chr5g0437601 39.810 422 219 6 3 396 10 424 5.36e-116 344
Msa1063500 MtrunA17_Chr8g0360521 43.276 409 189 6 16 396 16 409 9.49e-116 343
Msa1063500 MtrunA17_Chr3g0113671 44.798 346 162 3 80 396 104 449 1.67e-110 331
Msa1063500 MtrunA17_Chr5g0437291 44.413 349 162 3 80 396 163 511 2.44e-108 328
Msa1063500 MtrunA17_Chr3g0114101 37.500 424 235 2 3 396 7 430 5.78e-106 319
Msa1063500 MtrunA17_Chr4g0005491 41.834 349 168 5 81 396 61 407 3.09e-98 298
Msa1063500 MtrunA17_Chr4g0005481 43.931 346 162 5 79 396 105 446 5.63e-98 299
Msa1063500 MtrunA17_Chr7g0243301 39.377 353 179 5 77 396 59 409 2.43e-94 288
Msa1063500 MtrunA17_Chr1g0210771 38.617 347 162 9 80 396 57 382 6.14e-81 253
Msa1063500 MtrunA17_Chr1g0171171 37.356 348 166 9 79 396 50 375 5.01e-76 240
Msa1063500 MtrunA17_Chr3g0105301 35.549 346 180 7 82 396 43 376 1.31e-72 231
Msa1063500 MtrunA17_Chr3g0097891 35.484 341 183 6 77 396 26 350 1.35e-72 231
Msa1063500 MtrunA17_Chr5g0430371 36.212 359 176 11 78 396 54 399 3.29e-72 231
Msa1063500 MtrunA17_Chr5g0413271 36.216 370 187 11 61 396 122 476 3.80e-71 231
Msa1063500 MtrunA17_Chr7g0269991 36.103 349 171 9 82 396 137 467 1.05e-70 229
Msa1063500 MtrunA17_Chr1g0175671 35.328 351 182 8 81 396 169 509 1.54e-67 223
Msa1063500 MtrunA17_Chr5g0413851 37.135 342 164 10 82 396 42 359 3.90e-67 217
Msa1063500 MtrunA17_Chr7g0258851 35.043 351 183 8 81 396 247 587 5.06e-67 223
Msa1063500 MtrunA17_Chr4g0041011 35.673 342 168 8 82 396 47 363 1.01e-66 216
Msa1063500 MtrunA17_Chr1g0213281 31.421 401 221 10 32 396 133 515 2.94e-66 219
Msa1063500 MtrunA17_Chr4g0068111 31.593 364 203 6 67 396 102 453 8.11e-66 216
Msa1063500 MtrunA17_Chr4g0071391 32.713 376 197 8 55 396 93 446 1.12e-65 216
Msa1063500 MtrunA17_Chr4g0045941 33.913 345 177 8 79 396 30 350 9.13e-65 210
Msa1063500 MtrunA17_Chr2g0325481 34.783 345 173 9 79 396 47 366 1.05e-64 211
Msa1063500 MtrunA17_Chr2g0314801 35.294 340 182 9 79 396 30 353 1.78e-64 209
Msa1063500 MtrunA17_Chr4g0045951 34.503 342 173 8 82 396 45 362 2.53e-63 207
Msa1063500 MtrunA17_Chr2g0287901 35.000 380 183 11 60 396 79 437 4.38e-63 209
Msa1063500 MtrunA17_Chr3g0085081 32.665 349 178 9 78 396 27 348 2.51e-62 204
Msa1063500 MtrunA17_Chr2g0283581 33.623 345 177 9 79 396 39 358 3.20e-62 204
Msa1063500 MtrunA17_Chr3g0085071 34.000 350 172 11 78 396 42 363 6.30e-62 203
Msa1063500 MtrunA17_Chr8g0368461 32.564 390 201 9 54 396 154 528 3.05e-61 206
Msa1063500 MtrunA17_Chr3g0091031 32.092 349 180 9 78 396 27 348 5.73e-61 200
Msa1063500 MtrunA17_Chr3g0126021 30.445 427 222 10 19 396 59 459 6.43e-61 204
Msa1063500 MtrunA17_Chr2g0314791 33.429 350 169 9 80 396 27 345 3.69e-59 196
Msa1063500 MtrunA17_Chr8g0384151 31.054 351 186 6 80 396 88 416 1.05e-56 192
Msa1063500 MtrunA17_Chr7g0259711 30.919 359 193 8 79 396 88 432 2.69e-56 191
Msa1063500 MtrunA17_Chr1g0178081 30.411 365 130 13 80 396 53 341 6.27e-41 148
Msa1063500 MtrunA17_Chr1g0209921 34.599 237 116 6 79 286 41 267 5.49e-40 143
Msa1063500 MtrunA17_Chr8g0391481 29.330 358 202 12 80 396 25 372 1.69e-38 142
Msa1063500 MtrunA17_Chr5g0414091 29.839 372 190 14 77 396 79 431 6.86e-38 141
Msa1063500 MtrunA17_Chr5g0414041 30.663 362 199 14 77 396 82 433 1.12e-37 141
Msa1063500 MtrunA17_Chr5g0414051 28.307 378 198 14 71 396 64 420 5.17e-37 139
Msa1063500 MtrunA17_Chr5g0414061 29.330 358 199 13 81 396 93 438 9.25e-36 136
Msa1063500 MtrunA17_Chr7g0226991 29.041 365 194 15 80 396 55 402 1.01e-34 132
Msa1063500 MtrunA17_Chr6g0456691 26.950 423 240 14 18 396 22 419 2.22e-34 132
Msa1063500 MtrunA17_Chr3g0140371 29.315 365 186 14 82 396 18 360 3.17e-34 130
Msa1063500 MtrunA17_Chr8g0387921 25.059 423 253 13 20 396 15 419 6.40e-34 130
Msa1063500 MtrunA17_Chr6g0456681 27.978 361 204 12 79 396 61 408 1.00e-32 127
Msa1063500 MtrunA17_Chr8g0347321 25.986 431 240 16 28 396 26 439 1.67e-30 121
Msa1063500 MtrunA17_Chr2g0283851 27.882 373 182 15 83 396 56 400 4.20e-30 119
Msa1063500 MtrunA17_Chr1g0188191 24.352 386 236 14 55 396 208 581 8.63e-30 120
Msa1063500 MtrunA17_Chr6g0476041 25.070 359 214 12 82 396 167 514 1.00e-28 117
Msa1063500 MtrunA17_Chr8g0384421 26.016 369 196 15 79 396 130 472 4.99e-28 115
Msa1063500 MtrunA17_Chr4g0070341 26.776 366 191 13 82 396 132 471 2.81e-27 112
Msa1063500 MtrunA17_Chr4g0049421 25.956 366 199 15 82 396 48 392 1.04e-26 110
Msa1063500 MtrunA17_Chr6g0451321 24.022 358 221 9 78 396 112 457 3.41e-26 109
Msa1063500 MtrunA17_Chr6g0455901 25.069 363 211 12 80 396 69 416 1.46e-23 101
Msa1063500 MtrunA17_Chr7g0221271 33.133 166 77 3 50 182 41 205 6.63e-20 87.4
Msa1063500 MtrunA17_Chr7g0221291 46.067 89 47 1 78 166 75 162 1.11e-19 85.9
Msa1063500 MtrunA17_Chr3g0085101 34.906 106 61 2 253 355 6 106 1.20e-15 72.8
Msa1063500 MtrunA17_Chr1g0209931 35.294 102 50 2 295 396 7 92 6.17e-14 67.4
Msa1063500 MtrunA17_Chr5g0429191 54.167 48 17 2 343 389 2 45 7.16e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1063500 AT5G01360.1 59.811 423 129 5 13 396 14 434 0.0 517
Msa1063500 AT5G01360.2 65.537 354 94 2 71 396 25 378 7.81e-178 500
Msa1063500 AT1G73140.1 45.609 353 157 4 72 396 60 405 2.74e-113 337
Msa1063500 AT3G55990.1 44.413 358 170 3 64 392 122 479 3.88e-111 334
Msa1063500 AT2G40150.1 43.048 374 177 4 55 392 43 416 4.68e-109 327
Msa1063500 AT2G40320.1 37.101 407 223 2 17 396 22 422 1.38e-105 318
Msa1063500 AT3G11030.1 41.159 345 175 2 80 396 104 448 2.34e-102 311
Msa1063500 AT2G38320.1 37.621 412 199 7 18 396 18 404 3.97e-97 296
Msa1063500 AT2G40160.2 41.547 349 172 6 80 396 75 423 2.15e-96 295
Msa1063500 AT2G40160.1 41.739 345 169 6 80 392 75 419 3.32e-96 294
Msa1063500 AT5G01620.2 41.379 348 171 6 78 396 106 449 2.13e-94 290
Msa1063500 AT5G01620.1 41.379 348 171 6 78 396 106 449 2.13e-94 290
Msa1063500 AT5G01620.3 41.379 348 171 6 78 396 114 457 3.16e-94 290
Msa1063500 AT2G38320.2 40.938 320 154 5 110 396 4 321 1.49e-86 266
Msa1063500 AT3G62390.1 37.216 352 171 9 80 396 136 472 4.42e-76 244
Msa1063500 AT2G30900.1 37.971 345 162 9 82 396 43 365 1.36e-74 236
Msa1063500 AT5G58600.1 32.930 413 228 11 16 396 5 400 5.25e-73 233
Msa1063500 AT3G54260.1 36.522 345 168 9 82 396 51 374 7.43e-72 230
Msa1063500 AT1G78710.1 35.549 346 173 8 78 396 34 356 3.20e-71 228
Msa1063500 AT5G49340.1 35.185 378 193 10 58 396 77 441 7.85e-71 229
Msa1063500 AT5G20590.1 35.244 349 182 6 82 396 141 479 2.74e-70 229
Msa1063500 AT3G12060.1 33.509 379 199 8 52 396 176 535 4.00e-70 230
Msa1063500 AT5G06700.1 34.115 384 197 10 52 396 228 594 7.32e-70 231
Msa1063500 AT2G34070.1 33.913 345 178 6 79 396 62 383 2.43e-69 223
Msa1063500 AT2G42570.1 33.714 350 181 10 74 396 39 364 2.24e-68 221
Msa1063500 AT1G29050.1 33.913 345 177 7 79 396 58 378 5.76e-67 217
Msa1063500 AT2G31110.2 33.528 343 177 9 81 396 44 362 7.12e-67 216
Msa1063500 AT1G48880.1 35.227 352 166 9 81 396 114 439 1.15e-66 218
Msa1063500 AT3G14850.2 35.224 335 181 8 79 392 31 350 3.82e-65 212
Msa1063500 AT2G30010.1 35.278 360 183 10 75 396 49 396 2.29e-63 208
Msa1063500 AT2G30010.2 35.278 360 183 10 75 396 92 439 4.38e-63 209
Msa1063500 AT1G60790.1 32.345 371 197 9 67 396 175 532 4.20e-61 206
Msa1063500 AT2G40160.3 41.176 238 110 4 80 287 75 312 1.25e-58 194
Msa1063500 AT3G06080.2 32.958 355 186 9 82 396 103 445 9.22e-56 190
Msa1063500 AT5G19160.1 30.879 421 234 11 18 396 39 444 3.36e-54 186
Msa1063500 AT5G06230.2 32.410 361 187 9 79 396 18 364 6.23e-54 183
Msa1063500 AT5G06230.1 32.410 361 187 9 79 396 59 405 1.19e-53 183
Msa1063500 AT3G62390.2 37.037 243 115 4 80 288 136 374 9.37e-52 179
Msa1063500 AT3G11570.1 30.973 339 176 8 99 396 98 419 6.07e-48 169
Msa1063500 AT1G78710.2 30.058 346 139 9 78 396 27 296 1.28e-46 162
Msa1063500 AT2G30900.2 38.496 226 101 6 82 278 43 259 1.40e-45 158
Msa1063500 AT2G34070.2 31.365 271 137 5 153 396 1 249 9.26e-44 153
Msa1063500 AT5G20590.2 34.583 240 121 3 82 287 141 378 3.31e-43 155
Msa1063500 AT5G58600.2 31.667 300 164 8 16 287 5 291 5.93e-43 152
Msa1063500 AT2G31110.3 33.333 225 114 5 81 278 44 259 2.65e-42 149
Msa1063500 AT5G19160.2 31.908 304 167 7 18 287 39 336 5.68e-40 145
Msa1063500 AT3G14850.1 32.567 261 141 7 153 392 1 247 6.53e-40 143
Msa1063500 AT3G06080.1 34.440 241 120 5 82 287 103 340 1.82e-38 141
Msa1063500 AT2G31110.1 33.188 229 130 7 168 396 9 214 2.43e-38 137
Msa1063500 AT1G70230.1 27.350 351 209 8 78 396 75 411 9.43e-37 138
Msa1063500 AT5G64020.1 28.184 369 194 15 82 396 57 408 1.88e-36 137
Msa1063500 AT2G37720.1 27.688 372 190 15 77 396 138 482 1.02e-32 128
Msa1063500 AT5G06230.3 30.522 249 131 4 79 287 59 305 1.22e-32 125
Msa1063500 AT5G64470.3 26.062 353 210 13 82 396 55 394 2.99e-32 126
Msa1063500 AT1G01430.1 27.072 362 210 13 79 396 96 447 3.80e-32 126
Msa1063500 AT2G14530.1 25.414 362 212 10 79 396 59 406 1.21e-30 122
Msa1063500 AT5G15890.1 26.448 397 219 14 50 396 149 522 4.78e-29 119
Msa1063500 AT3G02440.2 26.944 360 200 13 82 396 135 476 6.63e-29 118
Msa1063500 AT3G02440.1 27.095 358 202 13 82 396 127 468 7.85e-29 117
Msa1063500 AT5G64470.2 25.762 361 207 15 82 396 55 400 9.61e-29 116
Msa1063500 AT4G25360.1 24.650 357 222 11 81 396 174 524 1.40e-28 117
Msa1063500 AT4G25360.2 24.650 357 222 11 81 396 174 524 1.40e-28 117
Msa1063500 AT4G23790.1 26.400 375 202 16 76 396 73 427 1.02e-27 114
Msa1063500 AT4G01080.1 24.148 352 218 11 79 393 88 427 1.08e-27 114
Msa1063500 AT5G51640.1 25.260 384 221 15 60 396 124 488 7.71e-27 112
Msa1063500 AT5G20680.6 23.846 390 227 15 52 396 93 457 5.87e-26 109
Msa1063500 AT5G20680.2 23.846 390 227 15 52 396 169 533 7.20e-26 109
Msa1063500 AT5G20680.4 23.846 390 227 15 52 396 187 551 7.55e-26 109
Msa1063500 AT5G20680.1 23.846 390 227 15 52 396 187 551 7.55e-26 109
Msa1063500 AT5G20680.3 23.846 390 227 15 52 396 187 551 7.55e-26 109
Msa1063500 AT5G20680.5 23.846 390 227 15 52 396 187 551 7.55e-26 109
Msa1063500 AT4G11090.1 25.067 375 205 15 76 396 73 425 1.62e-25 107
Msa1063500 AT5G15900.1 24.590 427 237 17 19 396 19 409 1.37e-24 105
Msa1063500 AT5G15900.2 24.590 427 237 17 19 396 38 428 1.55e-24 105
Msa1063500 AT3G28150.1 24.138 435 222 14 17 396 29 410 2.59e-24 103
Msa1063500 AT5G64470.4 25.746 268 156 11 82 312 55 316 4.68e-16 79.0
Msa1063500 AT5G64470.1 24.727 275 165 10 82 319 55 324 1.06e-15 77.8

Find 82 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGAAGACTTGGGCTAAT+TGG 0.164498 7_2:+55421503 Msa1063500:CDS
GAAAATTGTCTTTCTATATA+TGG 0.208909 7_2:-55420029 None:intergenic
GCAACATTGCCAATGGAAAA+TGG 0.220734 7_2:+55419961 Msa1063500:CDS
AATATTTGATTCCATGTATC+TGG 0.237560 7_2:-55422490 None:intergenic
CTTGGCAAGGTGCAATCTTC+TGG 0.245799 7_2:-55420104 None:intergenic
TCTTCAGTGTATACTGAAAA+TGG 0.259741 7_2:+55422391 Msa1063500:CDS
TTTAGTCTGGTGTTCTTTCT+AGG 0.269729 7_2:-55419528 None:intergenic
CCTTTCCTCATGATCCCTTC+TGG 0.271041 7_2:+55419366 Msa1063500:exon
AACACTGACATACATTTCAT+TGG 0.355620 7_2:+55420971 Msa1063500:CDS
TTTGAAGACTTGGGCTAATT+GGG 0.366796 7_2:+55421504 Msa1063500:CDS
GTTACGTTGATGAATGTAAC+TGG 0.382881 7_2:-55422337 None:intergenic
AGTTAAAGCATAGTATGTTT+TGG 0.385561 7_2:-55419211 None:intergenic
CATTTATCAGAAGCCAAGAT+TGG 0.391647 7_2:+55422188 Msa1063500:intron
AGATGAAATGAAAAGATCTA+TGG 0.391811 7_2:+55419072 Msa1063500:five_prime_UTR
ATATCAGAATATAGAATTGA+TGG 0.401543 7_2:+55422364 Msa1063500:CDS
GGGAAAAGACTACTATTTGT+AGG 0.402810 7_2:+55420627 Msa1063500:CDS
ATGCTAGTATAGAATTCTAC+TGG 0.404319 7_2:+55420927 Msa1063500:CDS
ACAAGTTAGCTTTGAAGACT+TGG 0.409219 7_2:+55421494 Msa1063500:CDS
CAAATAGAGATGATAATGAT+AGG 0.414378 7_2:-55419423 None:intergenic
CAAGTTATGTCAGTGTAGAT+TGG 0.416949 7_2:-55420005 None:intergenic
CAACATTGCCAATGGAAAAT+GGG 0.423964 7_2:+55419962 Msa1063500:CDS
TATGGTGGATGAGTGGTTCT+AGG 0.424096 7_2:+55421086 Msa1063500:CDS
TGTAGATTGGCTTTATTGAT+TGG 0.426931 7_2:-55419992 None:intergenic
ATTTATCAGAAGCCAAGATT+GGG 0.432804 7_2:+55422189 Msa1063500:intron
TTCACTTCAAAGAAATCAAT+GGG 0.450238 7_2:+55420653 Msa1063500:CDS
TGCATACATTGGTGTTTGCC+TGG 0.450244 7_2:+55422463 Msa1063500:CDS
CTGGTGTTCTTTCTAGGACA+AGG 0.456429 7_2:-55419522 None:intergenic
AGATTCTGATTATCAACATT+GGG 0.458543 7_2:+55420073 Msa1063500:CDS
TCATTTAGCAATGGATTTGA+AGG 0.461734 7_2:+55421442 Msa1063500:CDS
ATTCACTTCAAAGAAATCAA+TGG 0.464902 7_2:+55420652 Msa1063500:CDS
TTTGTGAGCCATACCCTTGT+TGG 0.472131 7_2:+55418979 Msa1063500:five_prime_UTR
AAAGAAAAGGATAATAAAAG+TGG 0.472940 7_2:+55421000 Msa1063500:CDS
ATTCTACTGGGCCCCATACC+TGG 0.476362 7_2:+55420940 Msa1063500:CDS
GTGTTAGACTCAACCAGGTA+TGG 0.478801 7_2:-55420953 None:intergenic
GGAAAAGACTACTATTTGTA+GGG 0.479501 7_2:+55420628 Msa1063500:CDS
AGGGTAAGAATGAGTTGAAA+GGG 0.481191 7_2:-55419155 None:intergenic
GAGATGATAATGATAGGAAA+AGG 0.487294 7_2:-55419417 None:intergenic
AAGGAATTAGAATGAATTAG+TGG 0.487663 7_2:-55419317 None:intergenic
AAAGCTAACTTGTATGCTAC+TGG 0.494526 7_2:-55421484 None:intergenic
CAGATTCTGATTATCAACAT+TGG 0.499692 7_2:+55420072 Msa1063500:CDS
TGTTAGACTCAACCAGGTAT+GGG 0.502247 7_2:-55420952 None:intergenic
CTATCAATCCAAACAAAACA+AGG 0.508070 7_2:+55421536 Msa1063500:CDS
TGCCTGGTGTTCCAGATACA+TGG 0.510835 7_2:+55422479 Msa1063500:CDS
GAGGGTAAGAATGAGTTGAA+AGG 0.515198 7_2:-55419156 None:intergenic
CAAGTTAGCTTTGAAGACTT+GGG 0.522945 7_2:+55421495 Msa1063500:CDS
CTGATTATCAACATTGGGAG+TGG 0.526215 7_2:+55420078 Msa1063500:CDS
ATGCAACATGGATTGATGAC+AGG 0.540613 7_2:+55419916 Msa1063500:CDS
ATACATGACCAACAAGGGTA+TGG 0.549793 7_2:-55418987 None:intergenic
CATTTAGCAATGGATTTGAA+GGG 0.555614 7_2:+55421443 Msa1063500:CDS
AGATGATAAGAAAGTTGATG+AGG 0.555639 7_2:+55419884 Msa1063500:intron
TCATTGGAGATACAAAGAAA+AGG 0.557285 7_2:+55420987 Msa1063500:CDS
CATGTAGAATATTTATCATG+TGG 0.564503 7_2:-55419126 None:intergenic
GAATAAGCTTAATAGTGAGA+AGG 0.567781 7_2:-55419336 None:intergenic
AATTGTTAAGTGAAGAAGAG+AGG 0.575802 7_2:+55422419 Msa1063500:CDS
AGATGGGGTTCATTTAGCAA+TGG 0.578823 7_2:+55421433 Msa1063500:intron
GAAGAATGCAACATTGCCAA+TGG 0.580954 7_2:+55419954 Msa1063500:CDS
TTCCATGTATCTGGAACACC+AGG 0.581846 7_2:-55422481 None:intergenic
ATGTAGAATATTTATCATGT+GGG 0.583411 7_2:-55419125 None:intergenic
GGAATAATGAAAATCCATAG+AGG 0.592887 7_2:+55419387 Msa1063500:CDS
GACAAAGACCTTGTGTGTGT+TGG 0.598822 7_2:-55421580 None:intergenic
TTTATCAGAAGCCAAGATTG+GGG 0.599140 7_2:+55422190 Msa1063500:intron
CAGAAGATTGCACCTTGCCA+AGG 0.601981 7_2:+55420105 Msa1063500:CDS
TTTACTTGCAAAATCAAGGG+TGG 0.602308 7_2:+55422667 Msa1063500:three_prime_UTR
TTAATATACATGACCAACAA+GGG 0.603853 7_2:-55418992 None:intergenic
GAAAAGACTACTATTTGTAG+GGG 0.609179 7_2:+55420629 Msa1063500:CDS
TTTAATATACATGACCAACA+AGG 0.612854 7_2:-55418993 None:intergenic
CAGTGTATACTGAAAATGGA+GGG 0.619439 7_2:+55422395 Msa1063500:CDS
CCAGAAGGGATCATGAGGAA+AGG 0.626313 7_2:-55419366 None:intergenic
CAATGTCACCAACACACACA+AGG 0.632942 7_2:+55421572 Msa1063500:CDS
AAAATGCAGATTGCATACAT+TGG 0.635099 7_2:+55422452 Msa1063500:CDS
GTTAGACTCAACCAGGTATG+GGG 0.635629 7_2:-55420951 None:intergenic
ACCACTCATCCACCATACAT+AGG 0.637859 7_2:-55421080 None:intergenic
TGTCAGTGTTAGACTCAACC+AGG 0.641142 7_2:-55420958 None:intergenic
TGCTAGTATAGAATTCTACT+GGG 0.645271 7_2:+55420928 Msa1063500:CDS
TTATTCCAGAAGGGATCATG+AGG 0.647125 7_2:-55419371 None:intergenic
GTGTGGAACTTACCTTGGCA+AGG 0.655568 7_2:-55420117 None:intergenic
TGATAAACGCATAATGAGTG+TGG 0.656426 7_2:+55422285 Msa1063500:CDS
AGGAGATTGTAAATGCAACA+TGG 0.660136 7_2:+55419904 Msa1063500:CDS
ACCTATGTATGGTGGATGAG+TGG 0.661766 7_2:+55421079 Msa1063500:CDS
TATCAATCCAAACAAAACAA+GGG 0.665595 7_2:+55421537 Msa1063500:CDS
TCAGTGTATACTGAAAATGG+AGG 0.667022 7_2:+55422394 Msa1063500:CDS
TTATCAGAAGCCAAGATTGG+GGG 0.672465 7_2:+55422191 Msa1063500:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGATATCTATATTTATAA+GGG - chr7_2:55420521-55420540 None:intergenic 10.0%
!! ATATGATATCTATATTTATA+AGG - chr7_2:55420522-55420541 None:intergenic 10.0%
!! TTAATGATTTAATTCAAATA+GGG - chr7_2:55421138-55421157 None:intergenic 10.0%
!! TTTAATGATTTAATTCAAAT+AGG - chr7_2:55421139-55421158 None:intergenic 10.0%
!! TAAATTAAGTGTATATTATA+AGG - chr7_2:55421644-55421663 None:intergenic 10.0%
!! ATCATTGCATAAAAAATTTA+GGG - chr7_2:55419836-55419855 None:intergenic 15.0%
!!! CAATTTTCTTGTATAAAAAA+TGG + chr7_2:55420044-55420063 Msa1063500:CDS 15.0%
!! ACATCAAATTACAAAATTTA+AGG - chr7_2:55420385-55420404 None:intergenic 15.0%
!!! TTTTTTTACAGAAAATAAAC+CGG + chr7_2:55420461-55420480 Msa1063500:intron 15.0%
!!! AAGTTATTACTTTAACTTTA+AGG + chr7_2:55420840-55420859 Msa1063500:intron 15.0%
!!! TTATTTTCTCAAATTATTAG+CGG + chr7_2:55422034-55422053 Msa1063500:intron 15.0%
!! ATGTAGAATATTTATCATGT+GGG - chr7_2:55419128-55419147 None:intergenic 20.0%
!! CATCATTGCATAAAAAATTT+AGG - chr7_2:55419837-55419856 None:intergenic 20.0%
!! GAAAATTGTCTTTCTATATA+TGG - chr7_2:55420032-55420051 None:intergenic 20.0%
!!! ACCTTTTGACATTATAAATA+GGG + chr7_2:55420173-55420192 Msa1063500:intron 20.0%
!!! TTCATAGATTTTTGATTTTG+AGG - chr7_2:55420711-55420730 None:intergenic 20.0%
!! AATCAAAAATCTATGAAAAG+AGG + chr7_2:55420714-55420733 Msa1063500:intron 20.0%
!! ATCAAAAATCTATGAAAAGA+GGG + chr7_2:55420715-55420734 Msa1063500:intron 20.0%
!! ATAGTACTAATATAGATACT+TGG + chr7_2:55420881-55420900 Msa1063500:intron 20.0%
!! AAAGAAAAGGATAATAAAAG+TGG + chr7_2:55421000-55421019 Msa1063500:CDS 20.0%
!!! TCTAGTTTATGAATTTTAGA+TGG + chr7_2:55421416-55421435 Msa1063500:intron 20.0%
!!! CTAGTTTATGAATTTTAGAT+GGG + chr7_2:55421417-55421436 Msa1063500:intron 20.0%
!!! TAGTTTATGAATTTTAGATG+GGG + chr7_2:55421418-55421437 Msa1063500:intron 20.0%
!!! AGTTTTTCTTTTAACAATGT+TGG + chr7_2:55421844-55421863 Msa1063500:intron 20.0%
!! AGATAATAATACAACAAAGA+AGG - chr7_2:55421943-55421962 None:intergenic 20.0%
!! TAATCTATGATGCATATATT+CGG - chr7_2:55422101-55422120 None:intergenic 20.0%
!! ATATCAGAATATAGAATTGA+TGG + chr7_2:55422364-55422383 Msa1063500:CDS 20.0%
!!! TACATGGAATCAAATATTTT+TGG + chr7_2:55422495-55422514 Msa1063500:CDS 20.0%
!!! AATTTTTACTTGCAAAATCA+AGG + chr7_2:55422663-55422682 Msa1063500:three_prime_UTR 20.0%
!!! ATTTTTACTTGCAAAATCAA+GGG + chr7_2:55422664-55422683 Msa1063500:three_prime_UTR 20.0%
! TTAATATACATGACCAACAA+GGG - chr7_2:55418995-55419014 None:intergenic 25.0%
! TTTAATATACATGACCAACA+AGG - chr7_2:55418996-55419015 None:intergenic 25.0%
! AGATGAAATGAAAAGATCTA+TGG + chr7_2:55419072-55419091 Msa1063500:five_prime_UTR 25.0%
! CATGTAGAATATTTATCATG+TGG - chr7_2:55419129-55419148 None:intergenic 25.0%
! ATGTCAAAAAAGATACTAGA+GGG - chr7_2:55419177-55419196 None:intergenic 25.0%
! AATGTCAAAAAAGATACTAG+AGG - chr7_2:55419178-55419197 None:intergenic 25.0%
!! AGTTAAAGCATAGTATGTTT+TGG - chr7_2:55419214-55419233 None:intergenic 25.0%
! AAGGAATTAGAATGAATTAG+TGG - chr7_2:55419320-55419339 None:intergenic 25.0%
!! CAAATAGAGATGATAATGAT+AGG - chr7_2:55419426-55419445 None:intergenic 25.0%
! ACAAGGTTTGAACTTAAAAA+TGG - chr7_2:55419508-55419527 None:intergenic 25.0%
! ATCTCTGAATTATTGAATGT+CGG + chr7_2:55419781-55419800 Msa1063500:intron 25.0%
! AGATTCTGATTATCAACATT+GGG + chr7_2:55420073-55420092 Msa1063500:CDS 25.0%
! GAAATCACAATTAACATGTT+TGG - chr7_2:55420144-55420163 None:intergenic 25.0%
!! CACCTTTTGACATTATAAAT+AGG + chr7_2:55420172-55420191 Msa1063500:intron 25.0%
! ACCCTATTTATAATGTCAAA+AGG - chr7_2:55420177-55420196 None:intergenic 25.0%
!!! TTTTTTTACAGAGTGTAAAC+CGG - chr7_2:55420235-55420254 None:intergenic 25.0%
! CAAAGAATCTTCAAATTACA+GGG - chr7_2:55420274-55420293 None:intergenic 25.0%
! CATCTAATATTAGTGATTTC+CGG - chr7_2:55420483-55420502 None:intergenic 25.0%
! ATTCACTTCAAAGAAATCAA+TGG + chr7_2:55420652-55420671 Msa1063500:CDS 25.0%
! TTCACTTCAAAGAAATCAAT+GGG + chr7_2:55420653-55420672 Msa1063500:CDS 25.0%
! TCAAAAATCTATGAAAAGAG+GGG + chr7_2:55420716-55420735 Msa1063500:intron 25.0%
!! TTGTTTTCAATACCTATGTA+TGG + chr7_2:55421068-55421087 Msa1063500:CDS 25.0%
! CATATTTCACTGCAATATAA+CGG - chr7_2:55421224-55421243 None:intergenic 25.0%
!!! TTCATCATGGTTTTAAATTG+CGG - chr7_2:55421327-55421346 None:intergenic 25.0%
! TCATTGTTGAATATTCATCA+TGG - chr7_2:55421340-55421359 None:intergenic 25.0%
!! AGAAATCATTTTCATCACTT+TGG - chr7_2:55421392-55421411 None:intergenic 25.0%
! TATCAATCCAAACAAAACAA+GGG + chr7_2:55421537-55421556 Msa1063500:CDS 25.0%
! GTATTATTATCTATGAAGCA+CGG + chr7_2:55421951-55421970 Msa1063500:intron 25.0%
! TTCAGTGTAATTATATGTGT+CGG - chr7_2:55422009-55422028 None:intergenic 25.0%
! AATATTTGATTCCATGTATC+TGG - chr7_2:55422493-55422512 None:intergenic 25.0%
!!! GGTTTTATGCATTTTTGAGT+AGG - chr7_2:55419242-55419261 None:intergenic 30.0%
AAAAAAGGTTTAGAGAGGTA+AGG - chr7_2:55419263-55419282 None:intergenic 30.0%
TGAAGACATTGCACAAAAAA+AGG - chr7_2:55419278-55419297 None:intergenic 30.0%
GAATAAGCTTAATAGTGAGA+AGG - chr7_2:55419339-55419358 None:intergenic 30.0%
! GGATTTTCATTATTCCAGAA+GGG - chr7_2:55419383-55419402 None:intergenic 30.0%
! TGGATTTTCATTATTCCAGA+AGG - chr7_2:55419384-55419403 None:intergenic 30.0%
GGAATAATGAAAATCCATAG+AGG + chr7_2:55419387-55419406 Msa1063500:CDS 30.0%
! GAGATGATAATGATAGGAAA+AGG - chr7_2:55419420-55419439 None:intergenic 30.0%
!! AGACTTACTTGATTTTAGTC+TGG - chr7_2:55419544-55419563 None:intergenic 30.0%
CGAAAATGAAGATATAGTTG+TGG - chr7_2:55419580-55419599 None:intergenic 30.0%
! TTTTTACGATCCGTATCAAA+TGG + chr7_2:55419809-55419828 Msa1063500:intron 30.0%
! AATTTAGGGTCCATTTGATA+CGG - chr7_2:55419822-55419841 None:intergenic 30.0%
!! AGATGATAAGAAAGTTGATG+AGG + chr7_2:55419884-55419903 Msa1063500:intron 30.0%
!! TGTAGATTGGCTTTATTGAT+TGG - chr7_2:55419995-55420014 None:intergenic 30.0%
CAGATTCTGATTATCAACAT+TGG + chr7_2:55420072-55420091 Msa1063500:CDS 30.0%
GAAATTGCTAATATTGAAGG+GGG - chr7_2:55420213-55420232 None:intergenic 30.0%
GGAAATTGCTAATATTGAAG+GGG - chr7_2:55420214-55420233 None:intergenic 30.0%
CGGAAATTGCTAATATTGAA+GGG - chr7_2:55420215-55420234 None:intergenic 30.0%
CCTTCAATATTAGCAATTTC+CGG + chr7_2:55420213-55420232 Msa1063500:intron 30.0%
CCAAAGAATCTTCAAATTAC+AGG - chr7_2:55420275-55420294 None:intergenic 30.0%
CCTGTAATTTGAAGATTCTT+TGG + chr7_2:55420272-55420291 Msa1063500:intron 30.0%
ACAAAATCGATGATATGACA+TGG + chr7_2:55420319-55420338 Msa1063500:intron 30.0%
CAAAATCGATGATATGACAT+GGG + chr7_2:55420320-55420339 Msa1063500:intron 30.0%
AAAATCGATGATATGACATG+GGG + chr7_2:55420321-55420340 Msa1063500:intron 30.0%
CAAAGAATCTTCAAACTACA+GGG + chr7_2:55420421-55420440 Msa1063500:intron 30.0%
CGGAAATCACTAATATTAGA+TGG + chr7_2:55420481-55420500 Msa1063500:intron 30.0%
! TTAGCTCTCAAAAAACTTCA+AGG + chr7_2:55420606-55420625 Msa1063500:CDS 30.0%
TAGCTCTCAAAAAACTTCAA+GGG + chr7_2:55420607-55420626 Msa1063500:CDS 30.0%
GGAAAAGACTACTATTTGTA+GGG + chr7_2:55420628-55420647 Msa1063500:CDS 30.0%
GAAAAGACTACTATTTGTAG+GGG + chr7_2:55420629-55420648 Msa1063500:CDS 30.0%
! ATGGGAATCTTTTGTATGTT+TGG + chr7_2:55420671-55420690 Msa1063500:intron 30.0%
! CTTTTGTATGTTTGGTAGAA+TGG + chr7_2:55420679-55420698 Msa1063500:intron 30.0%
!! TTAAGCCTTGTTTGGATAAA+CGG - chr7_2:55420807-55420826 None:intergenic 30.0%
!! GAATTTGTTTAAGCCTTGTT+TGG - chr7_2:55420815-55420834 None:intergenic 30.0%
ATGCTAGTATAGAATTCTAC+TGG + chr7_2:55420927-55420946 Msa1063500:CDS 30.0%
TGCTAGTATAGAATTCTACT+GGG + chr7_2:55420928-55420947 Msa1063500:CDS 30.0%
AACACTGACATACATTTCAT+TGG + chr7_2:55420971-55420990 Msa1063500:CDS 30.0%
TCATTGGAGATACAAAGAAA+AGG + chr7_2:55420987-55421006 Msa1063500:CDS 30.0%
TCAAAGAGAGAGCAAAAAAT+TGG + chr7_2:55421029-55421048 Msa1063500:CDS 30.0%
! TTTTCAATACCTATGTATGG+TGG + chr7_2:55421071-55421090 Msa1063500:CDS 30.0%
! TCATTTAGCAATGGATTTGA+AGG + chr7_2:55421442-55421461 Msa1063500:CDS 30.0%
! CATTTAGCAATGGATTTGAA+GGG + chr7_2:55421443-55421462 Msa1063500:CDS 30.0%
CTATCAATCCAAACAAAACA+AGG + chr7_2:55421536-55421555 Msa1063500:CDS 30.0%
! GTCTCTTCTAAGTATTTTCT+TGG + chr7_2:55421600-55421619 Msa1063500:intron 30.0%
!!! GTCAATTTTTTGTGATGAGT+AGG + chr7_2:55421736-55421755 Msa1063500:intron 30.0%
GTGAGTAATATAAATCTCAG+AGG - chr7_2:55421776-55421795 None:intergenic 30.0%
! CTTGTAAGCAATTTTCTACA+TGG - chr7_2:55421871-55421890 None:intergenic 30.0%
CATGTAGAAAATTGCTTACA+AGG + chr7_2:55421869-55421888 Msa1063500:intron 30.0%
ATTTATCAGAAGCCAAGATT+GGG + chr7_2:55422189-55422208 Msa1063500:intron 30.0%
!! AGTGAGAAAAAAGAAGCATT+GGG + chr7_2:55422252-55422271 Msa1063500:CDS 30.0%
TCTTCAGTGTATACTGAAAA+TGG + chr7_2:55422391-55422410 Msa1063500:CDS 30.0%
AATTGTTAAGTGAAGAAGAG+AGG + chr7_2:55422419-55422438 Msa1063500:CDS 30.0%
AAAATGCAGATTGCATACAT+TGG + chr7_2:55422452-55422471 Msa1063500:CDS 30.0%
! AGGGTAAGAATGAGTTGAAA+GGG - chr7_2:55419158-55419177 None:intergenic 35.0%
GCACAAAAAAAGGTTTAGAG+AGG - chr7_2:55419268-55419287 None:intergenic 35.0%
!!! GAAAAGGCATTTTTCCTCTA+TGG - chr7_2:55419404-55419423 None:intergenic 35.0%
TTTAGTCTGGTGTTCTTTCT+AGG - chr7_2:55419531-55419550 None:intergenic 35.0%
AACTGCTTCGAATGAAAAGT+TGG + chr7_2:55419719-55419738 Msa1063500:intron 35.0%
CAACTTTCTTATCATCTGCT+AGG - chr7_2:55419881-55419900 None:intergenic 35.0%
AGGAGATTGTAAATGCAACA+TGG + chr7_2:55419904-55419923 Msa1063500:CDS 35.0%
CAACATTGCCAATGGAAAAT+GGG + chr7_2:55419962-55419981 Msa1063500:CDS 35.0%
! GTTGAAAACCCATTTTCCAT+TGG - chr7_2:55419973-55419992 None:intergenic 35.0%
CAAGTTATGTCAGTGTAGAT+TGG - chr7_2:55420008-55420027 None:intergenic 35.0%
! CAATTAACATGTTTGGAGTG+TGG - chr7_2:55420137-55420156 None:intergenic 35.0%
CCGGAAATTGCTAATATTGA+AGG - chr7_2:55420216-55420235 None:intergenic 35.0%
GAATCTTCAAATTACAGGGT+TGG - chr7_2:55420270-55420289 None:intergenic 35.0%
!! TCACCTTCATGAATTTTGAC+TGG + chr7_2:55420296-55420315 Msa1063500:intron 35.0%
TGTCCAGTCAAAATTCATGA+AGG - chr7_2:55420302-55420321 None:intergenic 35.0%
CCTGTAGTTTGAAGATTCTT+TGG - chr7_2:55420423-55420442 None:intergenic 35.0%
CCAAAGAATCTTCAAACTAC+AGG + chr7_2:55420420-55420439 Msa1063500:intron 35.0%
!!! AGTTTTTTGAGAGCTAACAC+TGG - chr7_2:55420603-55420622 None:intergenic 35.0%
GGGAAAAGACTACTATTTGT+AGG + chr7_2:55420627-55420646 Msa1063500:CDS 35.0%
TCATTCAGTCTTCAAAGTCA+AGG + chr7_2:55420743-55420762 Msa1063500:intron 35.0%
TTTAGCCGTTTATCCAAACA+AGG + chr7_2:55420799-55420818 Msa1063500:intron 35.0%
TGTCAATGTAGCCACAATTA+CGG + chr7_2:55421253-55421272 Msa1063500:intron 35.0%
TAACAGTAGCCACCATATAA+CGG - chr7_2:55421287-55421306 None:intergenic 35.0%
ACTGTTATCTGTTGTGATTG+TGG + chr7_2:55421300-55421319 Msa1063500:intron 35.0%
! AAAGCTAACTTGTATGCTAC+TGG - chr7_2:55421487-55421506 None:intergenic 35.0%
!! ACAAGTTAGCTTTGAAGACT+TGG + chr7_2:55421494-55421513 Msa1063500:CDS 35.0%
!! CAAGTTAGCTTTGAAGACTT+GGG + chr7_2:55421495-55421514 Msa1063500:CDS 35.0%
TTTGAAGACTTGGGCTAATT+GGG + chr7_2:55421504-55421523 Msa1063500:CDS 35.0%
!!! AAGAAGACCCTTGTTTTGTT+TGG - chr7_2:55421547-55421566 None:intergenic 35.0%
TTAGGTCTAATGCAAGTGAT+TGG - chr7_2:55421811-55421830 None:intergenic 35.0%
ATCACTTGCATTAGACCTAA+TGG + chr7_2:55421811-55421830 Msa1063500:intron 35.0%
! GTAATTATATGTGTCGGTGT+CGG - chr7_2:55422003-55422022 None:intergenic 35.0%
ATGATGCATATATTCGGACA+CGG - chr7_2:55422095-55422114 None:intergenic 35.0%
ATAGTGCTCAACAAATCTCT+GGG - chr7_2:55422131-55422150 None:intergenic 35.0%
CATTTATCAGAAGCCAAGAT+TGG + chr7_2:55422188-55422207 Msa1063500:intron 35.0%
TTTATCAGAAGCCAAGATTG+GGG + chr7_2:55422190-55422209 Msa1063500:intron 35.0%
!!! CAATGCTTCTTTTTTCTCAC+TGG - chr7_2:55422253-55422272 None:intergenic 35.0%
! CAGTGAGAAAAAAGAAGCAT+TGG + chr7_2:55422251-55422270 Msa1063500:CDS 35.0%
!! GTGAGAAAAAAGAAGCATTG+GGG + chr7_2:55422253-55422272 Msa1063500:CDS 35.0%
TGATAAACGCATAATGAGTG+TGG + chr7_2:55422285-55422304 Msa1063500:CDS 35.0%
! GTTACGTTGATGAATGTAAC+TGG - chr7_2:55422340-55422359 None:intergenic 35.0%
TCAGTGTATACTGAAAATGG+AGG + chr7_2:55422394-55422413 Msa1063500:CDS 35.0%
CAGTGTATACTGAAAATGGA+GGG + chr7_2:55422395-55422414 Msa1063500:CDS 35.0%
! TGTATGCAATCTGCATTTTG+TGG - chr7_2:55422451-55422470 None:intergenic 35.0%
TTTACTTGCAAAATCAAGGG+TGG + chr7_2:55422667-55422686 Msa1063500:three_prime_UTR 35.0%
ATACATGACCAACAAGGGTA+TGG - chr7_2:55418990-55419009 None:intergenic 40.0%
! GAGGGTAAGAATGAGTTGAA+AGG - chr7_2:55419159-55419178 None:intergenic 40.0%
TTATTCCAGAAGGGATCATG+AGG - chr7_2:55419374-55419393 None:intergenic 40.0%
! CGCATGTTACTTGACTCTAA+AGG + chr7_2:55419598-55419617 Msa1063500:intron 40.0%
! ATGCAACATGGATTGATGAC+AGG + chr7_2:55419916-55419935 Msa1063500:CDS 40.0%
GAAGAATGCAACATTGCCAA+TGG + chr7_2:55419954-55419973 Msa1063500:CDS 40.0%
GCAACATTGCCAATGGAAAA+TGG + chr7_2:55419961-55419980 Msa1063500:CDS 40.0%
CTGATTATCAACATTGGGAG+TGG + chr7_2:55420078-55420097 Msa1063500:CDS 40.0%
CCTGTAATTGGCGAGAATTT+CGG - chr7_2:55420351-55420370 None:intergenic 40.0%
CGAAATTCTCGCCAATTACA+GGG + chr7_2:55420349-55420368 Msa1063500:intron 40.0%
GAAATTCTCGCCAATTACAG+GGG + chr7_2:55420350-55420369 Msa1063500:intron 40.0%
AAATTCTCGCCAATTACAGG+GGG + chr7_2:55420351-55420370 Msa1063500:intron 40.0%
ACTTGGATGTGTTGTAACAC+AGG + chr7_2:55420898-55420917 Msa1063500:intron 40.0%
TGTTAGACTCAACCAGGTAT+GGG - chr7_2:55420955-55420974 None:intergenic 40.0%
GAGAGAGCAAAAAATTGGAC+AGG + chr7_2:55421034-55421053 Msa1063500:CDS 40.0%
AGCAAAAAATTGGACAGGAG+TGG + chr7_2:55421039-55421058 Msa1063500:CDS 40.0%
AGATGGGGTTCATTTAGCAA+TGG + chr7_2:55421433-55421452 Msa1063500:intron 40.0%
! CTTTGAAGACTTGGGCTAAT+TGG + chr7_2:55421503-55421522 Msa1063500:CDS 40.0%
AAACTTGTATCGCTGCCATT+AGG - chr7_2:55421829-55421848 None:intergenic 40.0%
CATAGTGCTCAACAAATCTC+TGG - chr7_2:55422132-55422151 None:intergenic 40.0%
TTATCAGAAGCCAAGATTGG+GGG + chr7_2:55422191-55422210 Msa1063500:intron 40.0%
!! AAAAAGAAGCATTGGGGAAC+TGG + chr7_2:55422259-55422278 Msa1063500:CDS 40.0%
TTTGTGAGCCATACCCTTGT+TGG + chr7_2:55418979-55418998 Msa1063500:five_prime_UTR 45.0%
!! CTGGTGTTCTTTCTAGGACA+AGG - chr7_2:55419525-55419544 None:intergenic 45.0%
TTGGAGTGTGGAACTTACCT+TGG - chr7_2:55420125-55420144 None:intergenic 45.0%
CCGAAATTCTCGCCAATTAC+AGG + chr7_2:55420348-55420367 Msa1063500:intron 45.0%
GTTAGACTCAACCAGGTATG+GGG - chr7_2:55420954-55420973 None:intergenic 45.0%
GTGTTAGACTCAACCAGGTA+TGG - chr7_2:55420956-55420975 None:intergenic 45.0%
TGTCAGTGTTAGACTCAACC+AGG - chr7_2:55420961-55420980 None:intergenic 45.0%
!! ACCTATGTATGGTGGATGAG+TGG + chr7_2:55421079-55421098 Msa1063500:CDS 45.0%
ACCACTCATCCACCATACAT+AGG - chr7_2:55421083-55421102 None:intergenic 45.0%
!! TATGGTGGATGAGTGGTTCT+AGG + chr7_2:55421086-55421105 Msa1063500:CDS 45.0%
CAATGTCACCAACACACACA+AGG + chr7_2:55421572-55421591 Msa1063500:CDS 45.0%
GACAAAGACCTTGTGTGTGT+TGG - chr7_2:55421583-55421602 None:intergenic 45.0%
ATATATTCGGACACGGACAC+CGG - chr7_2:55422088-55422107 None:intergenic 45.0%
CTTTCATGTTCCCCCAATCT+TGG - chr7_2:55422204-55422223 None:intergenic 45.0%
! TGCATACATTGGTGTTTGCC+TGG + chr7_2:55422463-55422482 Msa1063500:CDS 45.0%
! TTCCATGTATCTGGAACACC+AGG - chr7_2:55422484-55422503 None:intergenic 45.0%
CCAGAAGGGATCATGAGGAA+AGG - chr7_2:55419369-55419388 None:intergenic 50.0%
CCTTTCCTCATGATCCCTTC+TGG + chr7_2:55419366-55419385 Msa1063500:exon 50.0%
CTTGGCAAGGTGCAATCTTC+TGG - chr7_2:55420107-55420126 None:intergenic 50.0%
CAGAAGATTGCACCTTGCCA+AGG + chr7_2:55420105-55420124 Msa1063500:CDS 50.0%
GTGTGGAACTTACCTTGGCA+AGG - chr7_2:55420120-55420139 None:intergenic 50.0%
GTACTTTCGCCCCCTGTAAT+TGG - chr7_2:55420363-55420382 None:intergenic 50.0%
ACGGCTGTGAAGCCGTTATA+TGG + chr7_2:55421272-55421291 Msa1063500:intron 50.0%
GCTGTGAAGCCGTTATATGG+TGG + chr7_2:55421275-55421294 Msa1063500:intron 50.0%
GCACGGACACTTCTCGAATT+AGG + chr7_2:55421968-55421987 Msa1063500:intron 50.0%
TGCCTGGTGTTCCAGATACA+TGG + chr7_2:55422479-55422498 Msa1063500:CDS 50.0%
ATTCTACTGGGCCCCATACC+TGG + chr7_2:55420940-55420959 Msa1063500:CDS 55.0%
CGGCTTCACAGCCGTAATTG+TGG - chr7_2:55421267-55421286 None:intergenic 55.0%
GTCAGTGTCCGTGTCGTGTC+CGG + chr7_2:55422066-55422085 Msa1063500:intron 60.0%
CACGGACACCGGACACGACA+CGG - chr7_2:55422077-55422096 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 55418959 55422750 55418959 ID=Msa1063500;Name=Msa1063500
chr7_2 mRNA 55418959 55422750 55418959 ID=Msa1063500-mRNA-1;Parent=Msa1063500;Name=Msa1063500-mRNA-1;_AED=0.11;_eAED=0.11;_QI=416|0.6|0.66|1|1|1|6|222|396
chr7_2 exon 55418959 55419555 55418959 ID=Msa1063500-mRNA-1:exon:10359;Parent=Msa1063500-mRNA-1
chr7_2 exon 55419898 55420126 55419898 ID=Msa1063500-mRNA-1:exon:10360;Parent=Msa1063500-mRNA-1
chr7_2 exon 55420593 55420683 55420593 ID=Msa1063500-mRNA-1:exon:10361;Parent=Msa1063500-mRNA-1
chr7_2 exon 55420920 55421119 55420920 ID=Msa1063500-mRNA-1:exon:10362;Parent=Msa1063500-mRNA-1
chr7_2 exon 55421435 55421593 55421435 ID=Msa1063500-mRNA-1:exon:10363;Parent=Msa1063500-mRNA-1
chr7_2 exon 55422198 55422750 55422198 ID=Msa1063500-mRNA-1:exon:10364;Parent=Msa1063500-mRNA-1
chr7_2 five_prime_UTR 55418959 55419374 55418959 ID=Msa1063500-mRNA-1:five_prime_utr;Parent=Msa1063500-mRNA-1
chr7_2 CDS 55419375 55419555 55419375 ID=Msa1063500-mRNA-1:cds;Parent=Msa1063500-mRNA-1
chr7_2 CDS 55419898 55420126 55419898 ID=Msa1063500-mRNA-1:cds;Parent=Msa1063500-mRNA-1
chr7_2 CDS 55420593 55420683 55420593 ID=Msa1063500-mRNA-1:cds;Parent=Msa1063500-mRNA-1
chr7_2 CDS 55420920 55421119 55420920 ID=Msa1063500-mRNA-1:cds;Parent=Msa1063500-mRNA-1
chr7_2 CDS 55421435 55421593 55421435 ID=Msa1063500-mRNA-1:cds;Parent=Msa1063500-mRNA-1
chr7_2 CDS 55422198 55422528 55422198 ID=Msa1063500-mRNA-1:cds;Parent=Msa1063500-mRNA-1
chr7_2 three_prime_UTR 55422529 55422750 55422529 ID=Msa1063500-mRNA-1:three_prime_utr;Parent=Msa1063500-mRNA-1
Gene Sequence

>Msa1063500

ATGATCCCTTCTGGAATAATGAAAATCCATAGAGGAAAAATGCCTTTTCCTATCATTATCATCTCTATTTGTATTCTTGTCTTCGTTGCTGTTTTGTATGCAGAGAGACTCAGTTTTCTTTCTTCTAAATCCATTTTTAAGTTCAAACCTTGTCCTAGAAAGAACACCAGACTAAAATCAATTGATGAGGAGATTGTAAATGCAACATGGATTGATGACAGGTTTGATTTTGACTCAGAAGAATGCAACATTGCCAATGGAAAATGGGTTTTCAACCAATCAATAAAGCCAATCTACACTGACATAACTTGTCCATATATAGAAAGACAATTTTCTTGTATAAAAAATGGTAGAGCAGATTCTGATTATCAACATTGGGAGTGGCAACCAGAAGATTGCACCTTGCCAAGTTTCAATCCAGTGTTAGCTCTCAAAAAACTTCAAGGGAAAAGACTACTATTTGTAGGGGATTCACTTCAAAGAAATCAATGGGAATCTTTTGAATACAATGCTAGTATAGAATTCTACTGGGCCCCATACCTGGTTGAGTCTAACACTGACATACATTTCATTGGAGATACAAAGAAAAGGATAATAAAAGTGGATGCTATCAAAGAGAGAGCAAAAAATTGGACAGGAGTGGATATTCTTGTTTTCAATACCTATGTATGGTGGATGAGTGGTTCTAGGATTAAATCATTATGGGGTTCATTTAGCAATGGATTTGAAGGGTATGAAGAATTTGATACACCAGTAGCATACAAGTTAGCTTTGAAGACTTGGGCTAATTGGGTTGACTCAACTATCAATCCAAACAAAACAAGGGTCTTCTTCACTACAATGTCACCAACACACACAAGAAGCCAAGATTGGGGGAACATGAAAGATGAGAAATGCTTCAATGAGACAAAGCCAGTGAGAAAAAAGAAGCATTGGGGAACTGGTTCTGATAAACGCATAATGAGTGTGGTAGCAAAAGTTGTGAAGAAAATGAAAGTTCCAGTTACATTCATCAACGTAACACAAATATCAGAATATAGAATTGATGGTCATTCTTCAGTGTATACTGAAAATGGAGGGAAATTGTTAAGTGAAGAAGAGAGGACAAATCCACAAAATGCAGATTGCATACATTGGTGTTTGCCTGGTGTTCCAGATACATGGAATCAAATATTTTTGGCAATGTTATAA
Protein sequence

>Msa1063500

MIPSGIMKIHRGKMPFPIIIISICILVFVAVLYAERLSFLSSKSIFKFKPCPRKNTRLKSIDEEIVNATWIDDRFDFDSEECNIANGKWVFNQSIKPIYTDITCPYIERQFSCIKNGRADSDYQHWEWQPEDCTLPSFNPVLALKKLQGKRLLFVGDSLQRNQWESFEYNASIEFYWAPYLVESNTDIHFIGDTKKRIIKVDAIKERAKNWTGVDILVFNTYVWWMSGSRIKSLWGSFSNGFEGYEEFDTPVAYKLALKTWANWVDSTINPNKTRVFFTTMSPTHTRSQDWGNMKDEKCFNETKPVRKKKHWGTGSDKRIMSVVAKVVKKMKVPVTFINVTQISEYRIDGHSSVYTENGGKLLSEEERTNPQNADCIHWCLPGVPDTWNQIFLAML*