AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0463010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0463010 MtrunA17_Chr3g0113081 97.638 635 15 0 65 699 2 636 0.0 1298
Msa0463010 MtrunA17_Chr3g0113081 44.444 153 85 0 64 216 376 528 2.49e-38 151
Msa0463010 MtrunA17_Chr1g0176881 26.899 316 204 4 248 563 22 310 1.67e-35 142
Msa0463010 MtrunA17_Chr1g0176881 25.890 309 217 3 63 368 14 313 2.06e-31 130
Msa0463010 MtrunA17_Chr1g0176881 33.333 129 86 0 446 574 22 150 1.83e-16 83.2
Msa0463010 MtrunA17_Chr1g0176881 28.000 150 107 1 68 217 190 338 1.16e-12 71.2
Msa0463010 MtrunA17_Chr8g0334551 40.288 139 81 2 248 384 22 160 5.67e-27 112
Msa0463010 MtrunA17_Chr8g0334551 33.482 224 136 7 431 643 1 222 5.72e-26 109
Msa0463010 MtrunA17_Chr8g0334551 39.370 127 75 2 70 194 21 147 5.30e-22 97.8
Msa0463010 MtrunA17_Chr2g0285481 39.130 138 82 2 242 377 17 154 4.17e-26 109
Msa0463010 MtrunA17_Chr2g0285481 25.806 279 162 5 457 691 35 312 2.39e-23 101
Msa0463010 MtrunA17_Chr2g0285481 38.400 125 75 2 70 192 22 146 4.56e-19 89.0
Msa0463010 MtrunA17_Chr1g0172741 39.130 138 82 2 242 377 17 154 4.58e-26 109
Msa0463010 MtrunA17_Chr1g0172741 25.806 279 162 5 457 691 35 312 1.51e-23 102
Msa0463010 MtrunA17_Chr1g0172741 38.400 125 75 2 70 192 22 146 4.96e-19 89.0
Msa0463010 MtrunA17_Chr5g0405761 27.667 300 177 7 429 696 33 324 7.06e-24 103
Msa0463010 MtrunA17_Chr5g0405761 30.208 192 116 4 211 400 23 198 3.02e-22 98.6
Msa0463010 MtrunA17_Chr5g0405761 33.333 147 93 2 51 192 25 171 2.51e-18 87.0
Msa0463010 MtrunA17_Chr3g0093841 20.759 448 299 7 114 557 67 462 1.59e-19 93.6
Msa0463010 MtrunA17_Chr3g0093841 20.588 306 226 4 74 376 352 643 3.81e-11 66.6
Msa0463010 MtrunA17_Chr8g0362511 27.650 217 145 5 407 613 23 237 6.27e-18 86.3
Msa0463010 MtrunA17_Chr8g0362511 24.419 172 126 3 248 415 68 239 1.27e-13 73.2
Msa0463010 MtrunA17_Chr8g0362511 25.899 139 101 2 71 207 68 206 1.64e-12 69.7
Msa0463010 MtrunA17_Chr5g0422691 41.975 81 46 1 242 321 17 97 4.29e-16 74.7
Msa0463010 MtrunA17_Chr5g0422691 42.857 84 46 2 70 151 22 105 1.22e-14 70.5
Msa0463010 MtrunA17_Chr5g0422691 39.683 63 38 0 457 519 35 97 5.89e-13 65.9
Msa0463010 MtrunA17_Chr5g0402821 23.585 318 185 9 431 690 1 318 5.50e-16 79.7
Msa0463010 MtrunA17_Chr5g0402821 28.488 172 109 4 238 408 6 164 2.21e-14 75.1
Msa0463010 MtrunA17_Chr5g0402821 30.534 131 89 2 69 198 14 143 1.64e-13 72.4
Msa0463010 MtrunA17_Chr8g0360271 30.833 120 83 0 74 193 13 132 4.88e-12 67.4
Msa0463010 MtrunA17_Chr8g0360271 27.517 149 108 0 242 390 4 152 1.33e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0463010 AT5G05800.1 41.807 476 218 6 245 696 1 441 8.02e-128 387
Msa0463010 AT5G05800.1 40.994 322 166 4 71 387 4 306 9.61e-87 280
Msa0463010 AT5G05800.1 48.889 135 69 0 66 200 162 296 1.31e-37 146
Msa0463010 AT5G05800.5 41.807 476 218 6 245 696 1 441 8.02e-128 387
Msa0463010 AT5G05800.5 40.994 322 166 4 71 387 4 306 9.61e-87 280
Msa0463010 AT5G05800.5 48.889 135 69 0 66 200 162 296 1.31e-37 146
Msa0463010 AT5G05800.3 41.807 476 218 6 245 696 1 441 8.02e-128 387
Msa0463010 AT5G05800.3 40.994 322 166 4 71 387 4 306 9.61e-87 280
Msa0463010 AT5G05800.3 48.889 135 69 0 66 200 162 296 1.31e-37 146
Msa0463010 AT5G05800.2 41.807 476 218 6 245 696 1 441 8.02e-128 387
Msa0463010 AT5G05800.2 40.994 322 166 4 71 387 4 306 9.61e-87 280
Msa0463010 AT5G05800.2 48.889 135 69 0 66 200 162 296 1.31e-37 146
Msa0463010 AT5G05800.4 41.807 476 218 6 245 696 1 441 8.02e-128 387
Msa0463010 AT5G05800.4 40.994 322 166 4 71 387 4 306 9.61e-87 280
Msa0463010 AT5G05800.4 48.889 135 69 0 66 200 162 296 1.31e-37 146
Msa0463010 AT3G11290.2 37.602 492 231 7 245 697 1 455 2.66e-105 329
Msa0463010 AT3G11290.2 37.278 338 174 4 71 397 4 314 4.37e-71 239
Msa0463010 AT3G11290.2 41.007 139 82 0 60 198 154 292 1.26e-28 120
Msa0463010 AT3G11290.1 37.602 492 231 7 245 697 1 455 2.66e-105 329
Msa0463010 AT3G11290.1 37.278 338 174 4 71 397 4 314 4.37e-71 239
Msa0463010 AT3G11290.1 41.007 139 82 0 60 198 154 292 1.26e-28 120
Msa0463010 AT2G19220.1 33.542 480 247 11 245 695 1 437 1.70e-77 255
Msa0463010 AT2G19220.1 33.333 333 196 5 70 397 3 314 5.77e-54 192
Msa0463010 AT3G11310.1 32.698 367 205 8 248 606 5 337 1.62e-57 204
Msa0463010 AT3G11310.1 36.119 335 186 8 71 393 5 323 1.43e-56 202
Msa0463010 AT3G11310.1 55.932 59 26 0 639 697 476 534 1.30e-14 77.8
Msa0463010 AT2G24960.2 22.718 515 315 7 70 574 11 452 1.20e-41 162
Msa0463010 AT2G24960.2 23.457 648 422 14 70 692 168 766 6.76e-41 160
Msa0463010 AT2G24960.2 23.077 351 217 3 248 586 12 321 1.90e-27 119
Msa0463010 AT2G24960.2 26.490 151 111 0 440 590 6 156 4.07e-13 73.6
Msa0463010 AT2G24960.1 22.180 532 320 8 70 574 11 475 1.89e-37 150
Msa0463010 AT2G24960.1 22.504 671 423 15 70 692 168 789 1.22e-36 147
Msa0463010 AT2G24960.1 23.077 351 217 3 248 586 12 321 1.46e-27 119
Msa0463010 AT2G24960.1 26.490 151 111 0 440 590 6 156 3.31e-13 73.6
Msa0463010 AT4G02210.1 25.439 456 295 11 248 692 11 432 9.85e-30 123
Msa0463010 AT4G02210.1 26.045 311 223 3 63 372 3 307 5.82e-29 120
Msa0463010 AT4G02210.1 26.111 180 114 4 439 602 4 180 3.64e-12 69.7
Msa0463010 AT4G02210.2 25.439 456 295 11 248 692 11 432 9.85e-30 123
Msa0463010 AT4G02210.2 26.045 311 223 3 63 372 3 307 5.82e-29 120
Msa0463010 AT4G02210.2 26.111 180 114 4 439 602 4 180 3.64e-12 69.7

Find 176 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTGAAACTGTGCAGCTTC+TGG 0.143847 3_3:-62252023 None:intergenic
AGCTGCACAATTCCGCTTTA+AGG 0.169241 3_3:+62252640 Msa0463010:CDS
TATATTAAGTGTTTAGTTAT+TGG 0.173216 3_3:+62253891 Msa0463010:three_prime_UTR
TTGAAATCTGGTTTCAATTA+TGG 0.190688 3_3:+62253055 Msa0463010:CDS
CTGGTTACATCTGGTTCTTT+TGG 0.202006 3_3:-62253460 None:intergenic
TAGCGAAACTGGGCAGCTTC+TGG 0.216397 3_3:-62253313 None:intergenic
AAGCGGAATTGTGCAGCTTC+TGG 0.216808 3_3:-62252635 None:intergenic
GCATCAAATGTATTGGTCTT+TGG 0.236430 3_3:-62252494 None:intergenic
GCATTGGAAACTCTCTTTAA+TGG 0.255746 3_3:+62253358 Msa0463010:CDS
TGCTCTAGCCACACCTTTGC+AGG 0.284939 3_3:+62252145 Msa0463010:CDS
TATCCAATTCTTCTTTAAAC+TGG 0.295444 3_3:-62252055 None:intergenic
GTCCAATTGGCTTTGACCTT+GGG 0.298375 3_3:-62252917 None:intergenic
GCAGGTGTCCACGAGGCTTT+TGG 0.299885 3_3:-62252248 None:intergenic
GGAGGGCTGGAAGAATATTA+TGG 0.301709 3_3:+62252346 Msa0463010:CDS
CCAGAAAACAGTGGAAAATC+TGG 0.303660 3_3:+62252435 Msa0463010:CDS
AGCTGCCCAGTTTCGCTATA+AGG 0.304629 3_3:+62253318 Msa0463010:CDS
ATAACTCAACAAAGATCTTA+TGG 0.304959 3_3:-62251654 None:intergenic
CCAGACCTTCCATAGTTTCC+TGG 0.306465 3_3:-62251815 None:intergenic
TTGGCACTAGTTACATGAAA+TGG 0.309581 3_3:+62253143 Msa0463010:CDS
AGATTGGACTAAATATTTAA+AGG 0.317565 3_3:+62253201 Msa0463010:CDS
AATCCAGTTTAAAGAAGAAT+TGG 0.323192 3_3:+62252052 Msa0463010:CDS
TGTCTGCAGGAGACATTAAA+TGG 0.332516 3_3:+62252971 Msa0463010:CDS
AGAGGTTCGCGGCCACAATC+TGG 0.341782 3_3:-62251244 None:intergenic
ACTGAAACTGTGCAGCTTCT+GGG 0.344792 3_3:-62252022 None:intergenic
GTAGTGCCTTATAGCGAAAC+TGG 0.345668 3_3:-62253324 None:intergenic
CATCAAATGTATTGGTCTTT+GGG 0.350785 3_3:-62252493 None:intergenic
TATGCTGAAAGTATACAAAC+TGG 0.378025 3_3:+62252695 Msa0463010:CDS
TTGCCTTCAGCACACGAGAT+TGG 0.379096 3_3:-62253559 None:intergenic
TCCCCTTCAAAGTTTCTTCA+AGG 0.384397 3_3:-62252298 None:intergenic
GCCTCAAATGTACTGTTAGA+TGG 0.386553 3_3:-62253169 None:intergenic
CCAGGAAACTATGGAAGGTC+TGG 0.387089 3_3:+62251815 Msa0463010:CDS
TCATCTAAGCTGGTTACATC+TGG 0.388961 3_3:-62253469 None:intergenic
ATGATTCCACCAGGAAACTA+TGG 0.392758 3_3:+62251806 Msa0463010:CDS
TAGTGGAGAATTAGCCATTT+CGG 0.394341 3_3:-62252222 None:intergenic
GATATTCTTCCAACCTTCCT+TGG 0.397462 3_3:-62253017 None:intergenic
GGTCCAATTGGCTTTGACCT+TGG 0.404309 3_3:-62252918 None:intergenic
CTTCACCTTCAAAAGCCAAT+TGG 0.404628 3_3:+62251620 Msa0463010:CDS
ATTATCTTGTTTCCATTGAC+TGG 0.405304 3_3:+62251309 Msa0463010:CDS
AGCGAAACTGGGCAGCTTCT+GGG 0.408320 3_3:-62253312 None:intergenic
TGCCTTCAGCACACGAGATT+GGG 0.412119 3_3:-62253558 None:intergenic
TTCTTTAAACTGGATTTCCT+TGG 0.416445 3_3:-62252045 None:intergenic
AGCGGAATTGTGCAGCTTCT+GGG 0.420700 3_3:-62252634 None:intergenic
TGTCTCTCGCTACTGGTTGA+AGG 0.420791 3_3:-62252728 None:intergenic
GTGTTGAAGGCGAATGAGCC+TGG 0.421145 3_3:+62251688 Msa0463010:CDS
ATGCCTTGAAGAAACTTTGA+AGG 0.421900 3_3:+62252295 Msa0463010:CDS
TCGCTTGCAATTGACCTGAT+TGG 0.427284 3_3:-62252869 None:intergenic
TTTAATGGTACTACTGCTAC+TGG 0.429566 3_3:+62253373 Msa0463010:CDS
CTGCAGACATAGATCAATAA+AGG 0.434916 3_3:-62252957 None:intergenic
GTGTGTTATTAAATATGAAA+TGG 0.436128 3_3:+62252193 Msa0463010:CDS
CTCTGAAGCATCAAATGTAT+TGG 0.436242 3_3:-62252501 None:intergenic
CTCGTGATAGTGGCATGAAA+TGG 0.436473 3_3:+62251848 Msa0463010:CDS
AATGTTCTTCCAAGCTTCCT+TGG 0.436883 3_3:-62251722 None:intergenic
AAAATCTGGGTTAAGTTGAT+TGG 0.440661 3_3:+62252449 Msa0463010:CDS
GTTTCCAATGCATCGGCTAA+TGG 0.443394 3_3:-62253346 None:intergenic
TTGGTGATGATAACATGAAA+TGG 0.447549 3_3:+62252468 Msa0463010:CDS
TTGCTTTAGATGTGTTCCTT+AGG 0.450137 3_3:+62253662 Msa0463010:CDS
ATAAAGGTCTTGTGCAATGA+AGG 0.455989 3_3:-62252941 None:intergenic
GTGCAATGAAGGGGTCCAAT+TGG 0.456045 3_3:-62252930 None:intergenic
TTTCCCTATGTTCCTGCCTA+AGG 0.457886 3_3:-62253678 None:intergenic
GAATGCATTGAATGCCTTGA+TGG 0.458667 3_3:+62253601 Msa0463010:CDS
ATCATTCTGTCTCTCGCTAC+TGG 0.458971 3_3:-62252735 None:intergenic
TTGATGCTTCAGAGGAAGAC+TGG 0.459466 3_3:+62252510 Msa0463010:CDS
AGACTGGTGCGATTATATAA+AGG 0.460958 3_3:+62251906 Msa0463010:CDS
ATCCCAAGGTCAAAGCCAAT+TGG 0.462883 3_3:+62252915 Msa0463010:CDS
GATTACAATTTAAGAATCAC+TGG 0.465790 3_3:+62253080 Msa0463010:CDS
TGGCACTAGTTACATGAAAT+GGG 0.466347 3_3:+62253144 Msa0463010:CDS
TTTAGATGTGTTCCTTAGGC+AGG 0.466437 3_3:+62253666 Msa0463010:CDS
CTGTACCTGCTCTGCAACAA+AGG 0.466766 3_3:+62253401 Msa0463010:CDS
TTGAGGCTAGTGAAGCAGAT+TGG 0.469726 3_3:+62253185 Msa0463010:CDS
TGATGAATGCTACACCAATC+AGG 0.469824 3_3:+62252855 Msa0463010:CDS
GAAGCTTGGAAGAACATTGT+TGG 0.471493 3_3:+62251727 Msa0463010:CDS
CAAAGGAACAATGGAGAGCT+TGG 0.472137 3_3:+62253110 Msa0463010:CDS
GGTGGTGGTGGTGATGGCGA+TGG 0.472378 3_3:-62253819 None:intergenic
GAGGGCTGGAAGAATATTAT+GGG 0.473558 3_3:+62252347 Msa0463010:CDS
GATATTGTGGTAAGCTAACT+TGG 0.474855 3_3:+62253934 Msa0463010:three_prime_UTR
TGCATTCGACAGCCAGTCAA+TGG 0.476576 3_3:-62251321 None:intergenic
ACATTAAATGGAAATAAGCC+TGG 0.484176 3_3:+62252983 Msa0463010:CDS
CTTTATTGATCTATGTCTGC+AGG 0.487195 3_3:+62252958 Msa0463010:CDS
ACTTTGAAGGGGAACAAAGC+CGG 0.489626 3_3:+62252308 Msa0463010:CDS
TGAAATGGAGACTTCCGAAA+TGG 0.490041 3_3:+62252208 Msa0463010:CDS
TTACAGAGGTTTGCAAAACC+AGG 0.490759 3_3:-62253996 None:intergenic
ATGGAACGCAGGGTTCCAAT+TGG 0.490953 3_3:-62251635 None:intergenic
TGTTCCTTAGGCAGGAACAT+AGG 0.491627 3_3:+62253674 Msa0463010:CDS
TTCCCTCGCTCTACACGTAA+AGG 0.492132 3_3:-62252785 None:intergenic
CTTTGAAGGGGAACAAAGCC+GGG 0.492937 3_3:+62252309 Msa0463010:CDS
CCGCGTGTTCTTCCCTGCAA+AGG 0.500408 3_3:-62252158 None:intergenic
CAATCAAGCTCGTAGCAGCT+AGG 0.500646 3_3:-62251274 None:intergenic
CATTGAATGCCTTGATGGAA+TGG 0.500651 3_3:+62253606 Msa0463010:CDS
CAACATGATGGTGGTGGTGG+TGG 0.506578 3_3:-62253834 None:intergenic
TAATGTCGTGGCCCAGATTG+TGG 0.508266 3_3:+62251232 Msa0463010:CDS
ATGTGTCAAAGAAGTGTTGA+AGG 0.508600 3_3:+62251675 Msa0463010:CDS
AGAGCTTGGTCTAAGCTTGT+TGG 0.510724 3_3:+62253124 Msa0463010:CDS
TGAGGCTTACCAAGGAAGCT+TGG 0.512578 3_3:+62251713 Msa0463010:CDS
AGCCTAATCTGAGGATCTCA+TGG 0.514709 3_3:+62253719 Msa0463010:CDS
GATAAGTTGACTCGTGATAG+TGG 0.515435 3_3:+62251838 Msa0463010:CDS
CATCTAAAGCAAACAAATAG+AGG 0.515513 3_3:-62253651 None:intergenic
GATGAGAAGACTGCATCTCT+TGG 0.519314 3_3:+62253487 Msa0463010:CDS
TGCAGTCTTCTCATCTAAGC+TGG 0.519640 3_3:-62253479 None:intergenic
TCCTTGGTAAAATGTGTCCC+AGG 0.521318 3_3:-62253001 None:intergenic
TGCCTTGAAGAAACTTTGAA+GGG 0.522988 3_3:+62252296 Msa0463010:CDS
GAGGTTCGCGGCCACAATCT+GGG 0.523686 3_3:-62251243 None:intergenic
ATCAGTACGTCTGAAGTGGC+AGG 0.525557 3_3:+62252118 Msa0463010:CDS
GAATTGGATATCATCTTTGA+CGG 0.526383 3_3:+62252068 Msa0463010:CDS
TTAATGGTACTACTGCTACT+GGG 0.526433 3_3:+62253374 Msa0463010:CDS
TCCATCTAACAGTACATTTG+AGG 0.526936 3_3:+62253168 Msa0463010:CDS
GATGCTGTTGCATCAAGAAA+TGG 0.527581 3_3:+62253511 Msa0463010:CDS
GTTCCTTAGGCAGGAACATA+GGG 0.529143 3_3:+62253675 Msa0463010:CDS
TTGCAGCGGCTTCAGTCTGT+TGG 0.532276 3_3:+62253742 Msa0463010:CDS
TTCCCAATCTCGTGTGCTGA+AGG 0.533639 3_3:+62253556 Msa0463010:CDS
CAGGAAACTATGGAAGGTCT+GGG 0.536787 3_3:+62251816 Msa0463010:CDS
AAGCTTAGAAATGTGTATTG+TGG 0.537259 3_3:+62253957 Msa0463010:three_prime_UTR
TAAAGGTCTTGTGCAATGAA+GGG 0.541939 3_3:-62252940 None:intergenic
GGCGATGAATGTATGACAAA+AGG 0.542722 3_3:-62253781 None:intergenic
AAAGAGAGTTTCCAATGCAT+CGG 0.545012 3_3:-62253353 None:intergenic
TGGTGATGATAACATGAAAT+GGG 0.548043 3_3:+62252469 Msa0463010:CDS
TCGTGATAGTGGCATGAAAT+GGG 0.549220 3_3:+62251849 Msa0463010:CDS
AGCTGCACAGTTTCAGTCCA+AGG 0.549671 3_3:+62252028 Msa0463010:CDS
CTCCTTTACGTGTAGAGCGA+GGG 0.549961 3_3:+62252783 Msa0463010:CDS
TCTACACGTAAAGGAGGTAA+AGG 0.554505 3_3:-62252776 None:intergenic
AGGCGAATGAGCCTGGGATG+AGG 0.555161 3_3:+62251695 Msa0463010:CDS
AGTCTACGCAATCTCAATCA+TGG 0.555811 3_3:+62251343 Msa0463010:CDS
CAGAAAACAGTGGAAAATCT+GGG 0.557631 3_3:+62252436 Msa0463010:CDS
CACAATATCATCATTATGCA+AGG 0.559416 3_3:-62253920 None:intergenic
AACCATGAGATCCTCAGATT+AGG 0.559551 3_3:-62253721 None:intergenic
TCCTTGGTAAGCCTCATCCC+AGG 0.563658 3_3:-62251706 None:intergenic
CAATACATTTGATGCTTCAG+AGG 0.564237 3_3:+62252502 Msa0463010:CDS
GAGGTTTGCAAAACCAGGGA+AGG 0.564956 3_3:-62253991 None:intergenic
ACTACCATTAGCCGATGCAT+TGG 0.568272 3_3:+62253342 Msa0463010:CDS
GAAACATAAGAGTATTAATG+AGG 0.571367 3_3:+62252808 Msa0463010:CDS
ATGCTGAAAGTATACAAACT+GGG 0.574364 3_3:+62252696 Msa0463010:CDS
AGACTGGCTTGATTATCTAA+AGG 0.575384 3_3:+62252526 Msa0463010:CDS
AATCAAGCTCGTAGCAGCTA+GGG 0.578562 3_3:-62251273 None:intergenic
CTTGCATAATGATGATATTG+TGG 0.581753 3_3:+62253921 Msa0463010:three_prime_UTR
GCTCTAGCCACACCTTTGCA+GGG 0.583226 3_3:+62252146 Msa0463010:CDS
CAAAGATCTTATGGAACGCA+GGG 0.583477 3_3:-62251645 None:intergenic
CTCCTTGCTAAAATGTGACC+CGG 0.586720 3_3:-62252327 None:intergenic
CTACGTCTTCCATTCCATCA+AGG 0.586812 3_3:-62253615 None:intergenic
CATTAAATGGAAATAAGCCT+GGG 0.588927 3_3:+62252984 Msa0463010:CDS
ACAAAGATCTTATGGAACGC+AGG 0.590554 3_3:-62251646 None:intergenic
CCTCCTTTACGTGTAGAGCG+AGG 0.592898 3_3:+62252782 Msa0463010:CDS
TAATGGTACTACTGCTACTG+GGG 0.600343 3_3:+62253375 Msa0463010:CDS
GCCACGCTCATCTCATCCCA+AGG 0.601470 3_3:+62252901 Msa0463010:CDS
GGCAAACGTAGTTATAGCAT+CGG 0.601526 3_3:+62253577 Msa0463010:CDS
AAACAACATGATGGTGGTGG+TGG 0.601619 3_3:-62253837 None:intergenic
TGGTGGTGATGGCGATGGTG+CGG 0.602053 3_3:-62253814 None:intergenic
GGGATAATACAAAGGAACAA+TGG 0.604368 3_3:+62253101 Msa0463010:CDS
GACCTTCCATAGTTTCCTGG+TGG 0.610971 3_3:-62251812 None:intergenic
AAAGGTCTTGTGCAATGAAG+GGG 0.611192 3_3:-62252939 None:intergenic
AGAATCATTATGATTCCACC+AGG 0.612682 3_3:+62251797 Msa0463010:CDS
TGTTCTTCCCTGCAAAGGTG+TGG 0.613023 3_3:-62252153 None:intergenic
CGATGGTGCGGTGACTGTGA+TGG 0.617895 3_3:-62253802 None:intergenic
TTGGTGCTACTGAAGAAGAC+TGG 0.619276 3_3:+62251890 Msa0463010:CDS
TACAGAGGTTTGCAAAACCA+GGG 0.621048 3_3:-62253995 None:intergenic
TGTTGAAGGCGAATGAGCCT+GGG 0.621575 3_3:+62251689 Msa0463010:CDS
CACTAACTCCAAAAGCCTCG+TGG 0.623026 3_3:+62252240 Msa0463010:CDS
GAAATGGGATTTCCTTAAAG+CGG 0.629119 3_3:-62252652 None:intergenic
TGAGGATCTCATGGTTGCAG+CGG 0.631121 3_3:+62253728 Msa0463010:CDS
TGCTGAAAGTATACAAACTG+GGG 0.632754 3_3:+62252697 Msa0463010:CDS
GCCTTGAAGAAACTTTGAAG+GGG 0.637808 3_3:+62252297 Msa0463010:CDS
AGGTTTGCAAAACCAGGGAA+GGG 0.645519 3_3:-62253990 None:intergenic
GGAATGGAAGACGTAGAGCA+AGG 0.645890 3_3:+62253622 Msa0463010:CDS
GCCTGGGATGAGGCTTACCA+AGG 0.655223 3_3:+62251705 Msa0463010:CDS
TAGTGCCTTATAGCGAAACT+GGG 0.655976 3_3:-62253323 None:intergenic
ATTACAATTTAAGAATCACT+GGG 0.656352 3_3:+62253081 Msa0463010:CDS
TTCAGCACACGAGATTGGGA+AGG 0.658829 3_3:-62253554 None:intergenic
CCTTTGCAGGGAAGAACACG+CGG 0.659312 3_3:+62252158 Msa0463010:CDS
TGCAGGGAAGAACACGCGGG+AGG 0.660194 3_3:+62252162 Msa0463010:CDS
GAATCACTGGGATAATACAA+AGG 0.663416 3_3:+62253093 Msa0463010:CDS
TTCCACCAGGAAACTATGGA+AGG 0.664111 3_3:+62251810 Msa0463010:CDS
GAAATAGTACAAGATTACAG+AGG 0.672115 3_3:-62254010 None:intergenic
CCTCGCTCTACACGTAAAGG+AGG 0.680459 3_3:-62252782 None:intergenic
ACACGTAAAGGAGGTAAAGG+AGG 0.681037 3_3:-62252773 None:intergenic
ATGATTTCACCAGAAAACAG+TGG 0.689547 3_3:+62252426 Msa0463010:CDS
ATGGTATGCAGGTGTCCACG+AGG 0.704128 3_3:-62252255 None:intergenic
CTTTGCAGGGAAGAACACGC+GGG 0.707858 3_3:+62252159 Msa0463010:CDS
ACCTTGGGATGAGATGAGCG+TGG 0.719184 3_3:-62252902 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAGTCAACAAATATTTTA+TGG - chr3_3:62252277-62252296 None:intergenic 15.0%
!! ATTAAATAAAAACAACATGA+TGG - chr3_3:62253849-62253868 None:intergenic 15.0%
!! TATATTAAGTGTTTAGTTAT+TGG + chr3_3:62253891-62253910 Msa0463010:three_prime_UTR 15.0%
!! TCTAATTGAAACTTGAATAT+TGG + chr3_3:62251542-62251561 Msa0463010:intron 20.0%
!!! TTTTCCTGCAAAAATTAAAA+AGG - chr3_3:62252002-62252021 None:intergenic 20.0%
!!! ACTGATTTTTTTATTTCTTC+AGG - chr3_3:62252104-62252123 None:intergenic 20.0%
!!! GTGTGTTATTAAATATGAAA+TGG + chr3_3:62252193-62252212 Msa0463010:CDS 20.0%
!!! ATAGATGATATCCAATTTTT+CGG - chr3_3:62252678-62252697 None:intergenic 20.0%
!!! GATTCATTTTATTTGAAATC+TGG + chr3_3:62253043-62253062 Msa0463010:CDS 20.0%
!! ATTACAATTTAAGAATCACT+GGG + chr3_3:62253081-62253100 Msa0463010:CDS 20.0%
!! AGATTGGACTAAATATTTAA+AGG + chr3_3:62253201-62253220 Msa0463010:CDS 20.0%
!! ACTTTATTATGTTCATCTTA+AGG + chr3_3:62253248-62253267 Msa0463010:intron 20.0%
! ATCAAAAAACTTTAATGCTG+TGG + chr3_3:62251383-62251402 Msa0463010:intron 25.0%
!! TTTTCTCAAATCATCTTGTT+TGG + chr3_3:62251463-62251482 Msa0463010:intron 25.0%
!! TTTCTCAAATCATCTTGTTT+GGG + chr3_3:62251464-62251483 Msa0463010:intron 25.0%
! AGGGATACAAATGAAATATT+TGG + chr3_3:62251498-62251517 Msa0463010:intron 25.0%
!! ATTAGATCCCATTTTACAAA+AGG - chr3_3:62251528-62251547 None:intergenic 25.0%
! ATAACTCAACAAAGATCTTA+TGG - chr3_3:62251657-62251676 None:intergenic 25.0%
! AGGCTTCATAATTATTTATC+TGG - chr3_3:62251982-62252001 None:intergenic 25.0%
! AATCCAGTTTAAAGAAGAAT+TGG + chr3_3:62252052-62252071 Msa0463010:CDS 25.0%
! TATCCAATTCTTCTTTAAAC+TGG - chr3_3:62252058-62252077 None:intergenic 25.0%
!!! GATTTTTTTATTTCTTCAGG+AGG - chr3_3:62252101-62252120 None:intergenic 25.0%
!! ACAAATATTTTATGGTATGC+AGG - chr3_3:62252269-62252288 None:intergenic 25.0%
!!! CAATTAAGTCATTTTGTTAC+AGG + chr3_3:62252607-62252626 Msa0463010:intron 25.0%
!! TAGATGATATCCAATTTTTC+GGG - chr3_3:62252677-62252696 None:intergenic 25.0%
!!! GAAACATAAGAGTATTAATG+AGG + chr3_3:62252808-62252827 Msa0463010:CDS 25.0%
!! TTGAAATCTGGTTTCAATTA+TGG + chr3_3:62253055-62253074 Msa0463010:CDS 25.0%
! GATTACAATTTAAGAATCAC+TGG + chr3_3:62253080-62253099 Msa0463010:CDS 25.0%
! CATAATAAAGTAAGTGCATT+TGG - chr3_3:62253239-62253258 None:intergenic 25.0%
! AAATAAAAACAACATGATGG+TGG - chr3_3:62253846-62253865 None:intergenic 25.0%
CATCAAAAACTTTAATGTCG+TGG + chr3_3:62251220-62251239 Msa0463010:CDS 30.0%
! ATTATCTTGTTTCCATTGAC+TGG + chr3_3:62251309-62251328 Msa0463010:CDS 30.0%
! TTCTCAAATCATCTTGTTTG+GGG + chr3_3:62251465-62251484 Msa0463010:intron 30.0%
!! ATTGGTTTGCATGAAATGTT+TGG + chr3_3:62251560-62251579 Msa0463010:intron 30.0%
! GTGCGATTATATAAAGGTAT+TGG + chr3_3:62251912-62251931 Msa0463010:intron 30.0%
TTATTATTGTTCGTCCAAGA+TGG + chr3_3:62251938-62251957 Msa0463010:intron 30.0%
!!! GAAGCCTTTTTAATTTTTGC+AGG + chr3_3:62251995-62252014 Msa0463010:intron 30.0%
TTCTTTAAACTGGATTTCCT+TGG - chr3_3:62252048-62252067 None:intergenic 30.0%
GAATTGGATATCATCTTTGA+CGG + chr3_3:62252068-62252087 Msa0463010:CDS 30.0%
!! AAAATCTGGGTTAAGTTGAT+TGG + chr3_3:62252449-62252468 Msa0463010:CDS 30.0%
!! TTGGTGATGATAACATGAAA+TGG + chr3_3:62252468-62252487 Msa0463010:CDS 30.0%
! TGGTGATGATAACATGAAAT+GGG + chr3_3:62252469-62252488 Msa0463010:CDS 30.0%
!! CATCAAATGTATTGGTCTTT+GGG - chr3_3:62252496-62252515 None:intergenic 30.0%
! TTGATTATCTAAAGGTACGA+AGG + chr3_3:62252534-62252553 Msa0463010:intron 30.0%
!!! TATCCAATTTTTCGGGAAAT+GGG - chr3_3:62252670-62252689 None:intergenic 30.0%
!!! ATATCCAATTTTTCGGGAAA+TGG - chr3_3:62252671-62252690 None:intergenic 30.0%
! TATGCTGAAAGTATACAAAC+TGG + chr3_3:62252695-62252714 Msa0463010:CDS 30.0%
! ATGCTGAAAGTATACAAACT+GGG + chr3_3:62252696-62252715 Msa0463010:CDS 30.0%
ACATTAAATGGAAATAAGCC+TGG + chr3_3:62252983-62253002 Msa0463010:CDS 30.0%
CATTAAATGGAAATAAGCCT+GGG + chr3_3:62252984-62253003 Msa0463010:CDS 30.0%
! CATCTAAAGCAAACAAATAG+AGG - chr3_3:62253654-62253673 None:intergenic 30.0%
CACAATATCATCATTATGCA+AGG - chr3_3:62253923-62253942 None:intergenic 30.0%
CTTGCATAATGATGATATTG+TGG + chr3_3:62253921-62253940 Msa0463010:three_prime_UTR 30.0%
AAGCTTAGAAATGTGTATTG+TGG + chr3_3:62253957-62253976 Msa0463010:three_prime_UTR 30.0%
GAAATAGTACAAGATTACAG+AGG - chr3_3:62254013-62254032 None:intergenic 30.0%
!!! TAACAGCTAGGGTTTTAAAG+AGG - chr3_3:62251428-62251447 None:intergenic 35.0%
! TTGGCAGACCTTTTGTAAAA+TGG + chr3_3:62251517-62251536 Msa0463010:intron 35.0%
! TGGCAGACCTTTTGTAAAAT+GGG + chr3_3:62251518-62251537 Msa0463010:intron 35.0%
!! ATGTGTCAAAGAAGTGTTGA+AGG + chr3_3:62251675-62251694 Msa0463010:CDS 35.0%
! GGATCCTTTTATGAAAAGAC+TGG + chr3_3:62251748-62251767 Msa0463010:CDS 35.0%
! CACTCCAGTCTTTTCATAAA+AGG - chr3_3:62251755-62251774 None:intergenic 35.0%
! CTTTTATGAAAAGACTGGAG+TGG + chr3_3:62251753-62251772 Msa0463010:CDS 35.0%
AGAATCATTATGATTCCACC+AGG + chr3_3:62251797-62251816 Msa0463010:CDS 35.0%
ATGAAATGGGATCCAAAAAC+TGG + chr3_3:62251862-62251881 Msa0463010:CDS 35.0%
GATCCAAAAACTGGAAAGTT+TGG + chr3_3:62251871-62251890 Msa0463010:CDS 35.0%
AGACTGGTGCGATTATATAA+AGG + chr3_3:62251906-62251925 Msa0463010:CDS 35.0%
AAAAATCAGTACGTCTGAAG+TGG + chr3_3:62252114-62252133 Msa0463010:CDS 35.0%
TAGTGGAGAATTAGCCATTT+CGG - chr3_3:62252225-62252244 None:intergenic 35.0%
ATGCCTTGAAGAAACTTTGA+AGG + chr3_3:62252295-62252314 Msa0463010:CDS 35.0%
TGCCTTGAAGAAACTTTGAA+GGG + chr3_3:62252296-62252315 Msa0463010:CDS 35.0%
! GGATACTTTTATGCAAAGAC+CGG + chr3_3:62252368-62252387 Msa0463010:CDS 35.0%
! TCTTTTGTCATATCTCACAC+CGG - chr3_3:62252390-62252409 None:intergenic 35.0%
ATGATTTCACCAGAAAACAG+TGG + chr3_3:62252426-62252445 Msa0463010:CDS 35.0%
CAGAAAACAGTGGAAAATCT+GGG + chr3_3:62252436-62252455 Msa0463010:CDS 35.0%
!! GCATCAAATGTATTGGTCTT+TGG - chr3_3:62252497-62252516 None:intergenic 35.0%
!! CTCTGAAGCATCAAATGTAT+TGG - chr3_3:62252504-62252523 None:intergenic 35.0%
CAATACATTTGATGCTTCAG+AGG + chr3_3:62252502-62252521 Msa0463010:CDS 35.0%
!! AGACTGGCTTGATTATCTAA+AGG + chr3_3:62252526-62252545 Msa0463010:CDS 35.0%
GAAATGGGATTTCCTTAAAG+CGG - chr3_3:62252655-62252674 None:intergenic 35.0%
AATCCCATTTCCCGAAAAAT+TGG + chr3_3:62252664-62252683 Msa0463010:CDS 35.0%
! TGCTGAAAGTATACAAACTG+GGG + chr3_3:62252697-62252716 Msa0463010:CDS 35.0%
! TAAAGGTCTTGTGCAATGAA+GGG - chr3_3:62252943-62252962 None:intergenic 35.0%
! ATAAAGGTCTTGTGCAATGA+AGG - chr3_3:62252944-62252963 None:intergenic 35.0%
CTGCAGACATAGATCAATAA+AGG - chr3_3:62252960-62252979 None:intergenic 35.0%
CTTTATTGATCTATGTCTGC+AGG + chr3_3:62252958-62252977 Msa0463010:CDS 35.0%
GAATCACTGGGATAATACAA+AGG + chr3_3:62253093-62253112 Msa0463010:CDS 35.0%
GGGATAATACAAAGGAACAA+TGG + chr3_3:62253101-62253120 Msa0463010:CDS 35.0%
TTGGCACTAGTTACATGAAA+TGG + chr3_3:62253143-62253162 Msa0463010:CDS 35.0%
TGGCACTAGTTACATGAAAT+GGG + chr3_3:62253144-62253163 Msa0463010:CDS 35.0%
TCCATCTAACAGTACATTTG+AGG + chr3_3:62253168-62253187 Msa0463010:CDS 35.0%
AAAGAGAGTTTCCAATGCAT+CGG - chr3_3:62253356-62253375 None:intergenic 35.0%
GCATTGGAAACTCTCTTTAA+TGG + chr3_3:62253358-62253377 Msa0463010:CDS 35.0%
TTTAATGGTACTACTGCTAC+TGG + chr3_3:62253373-62253392 Msa0463010:CDS 35.0%
TTAATGGTACTACTGCTACT+GGG + chr3_3:62253374-62253393 Msa0463010:CDS 35.0%
!!! TGGTTACATCTGGTTCTTTT+GGG - chr3_3:62253462-62253481 None:intergenic 35.0%
! TTGCTTTAGATGTGTTCCTT+AGG + chr3_3:62253662-62253681 Msa0463010:CDS 35.0%
!!! TCAGATTAGGCTTTTTCAAC+TGG - chr3_3:62253711-62253730 None:intergenic 35.0%
AGTTGAAAAAGCCTAATCTG+AGG + chr3_3:62253710-62253729 Msa0463010:CDS 35.0%
!! TAAAAACAACATGATGGTGG+TGG - chr3_3:62253843-62253862 None:intergenic 35.0%
GATATTGTGGTAAGCTAACT+TGG + chr3_3:62253934-62253953 Msa0463010:three_prime_UTR 35.0%
!!! TAGGGTTTTAAAGAGGTTCG+CGG - chr3_3:62251258-62251277 None:intergenic 40.0%
!!! TAGCAGCTAGGGTTTTAAAG+AGG - chr3_3:62251265-62251284 None:intergenic 40.0%
AGTCTACGCAATCTCAATCA+TGG + chr3_3:62251343-62251362 Msa0463010:CDS 40.0%
!!! TAGGGTTTTAAAGAGGTTGG+CGG - chr3_3:62251421-62251440 None:intergenic 40.0%
!!! AGCTAGGGTTTTAAAGAGGT+TGG - chr3_3:62251261-62251280 None:intergenic 40.0%
AATCAAGCACGTAACAGCTA+GGG - chr3_3:62251439-62251458 None:intergenic 40.0%
! TCAAATCATCTTGTTTGGGG+TGG + chr3_3:62251468-62251487 Msa0463010:intron 40.0%
! CAAATCATCTTGTTTGGGGT+GGG + chr3_3:62251469-62251488 Msa0463010:intron 40.0%
GTTTGCATGAAATGTTTGGC+AGG + chr3_3:62251564-62251583 Msa0463010:intron 40.0%
! AGGACATTTTTCATCGCACA+AGG + chr3_3:62251584-62251603 Msa0463010:intron 40.0%
! TTTTTCATCGCACAAGGTCA+AGG + chr3_3:62251590-62251609 Msa0463010:CDS 40.0%
CTTCACCTTCAAAAGCCAAT+TGG + chr3_3:62251620-62251639 Msa0463010:CDS 40.0%
CAAAGATCTTATGGAACGCA+GGG - chr3_3:62251648-62251667 None:intergenic 40.0%
ACAAAGATCTTATGGAACGC+AGG - chr3_3:62251649-62251668 None:intergenic 40.0%
AATGTTCTTCCAAGCTTCCT+TGG - chr3_3:62251725-62251744 None:intergenic 40.0%
GAAGCTTGGAAGAACATTGT+TGG + chr3_3:62251727-62251746 Msa0463010:CDS 40.0%
ATGATTCCACCAGGAAACTA+TGG + chr3_3:62251806-62251825 Msa0463010:CDS 40.0%
!! GATAAGTTGACTCGTGATAG+TGG + chr3_3:62251838-62251857 Msa0463010:CDS 40.0%
!! TCGTGATAGTGGCATGAAAT+GGG + chr3_3:62251849-62251868 Msa0463010:CDS 40.0%
! GCACCAAACTTTCCAGTTTT+TGG - chr3_3:62251877-62251896 None:intergenic 40.0%
TATTGTTCGTCCAAGATGGT+AGG + chr3_3:62251942-62251961 Msa0463010:intron 40.0%
ACGAAAATGTCCTACCATCT+TGG - chr3_3:62251955-62251974 None:intergenic 40.0%
! AAGATGGTAGGACATTTTCG+TGG + chr3_3:62251954-62251973 Msa0463010:intron 40.0%
TGAAATGGAGACTTCCGAAA+TGG + chr3_3:62252208-62252227 Msa0463010:CDS 40.0%
! GCCTTGAAGAAACTTTGAAG+GGG + chr3_3:62252297-62252316 Msa0463010:CDS 40.0%
TCCCCTTCAAAGTTTCTTCA+AGG - chr3_3:62252301-62252320 None:intergenic 40.0%
GAGGGCTGGAAGAATATTAT+GGG + chr3_3:62252347-62252366 Msa0463010:CDS 40.0%
! CCAGATTTTCCACTGTTTTC+TGG - chr3_3:62252438-62252457 None:intergenic 40.0%
CCAGAAAACAGTGGAAAATC+TGG + chr3_3:62252435-62252454 Msa0463010:CDS 40.0%
TCTACACGTAAAGGAGGTAA+AGG - chr3_3:62252779-62252798 None:intergenic 40.0%
TGATGAATGCTACACCAATC+AGG + chr3_3:62252855-62252874 Msa0463010:CDS 40.0%
! AAAGGTCTTGTGCAATGAAG+GGG - chr3_3:62252942-62252961 None:intergenic 40.0%
TGTCTGCAGGAGACATTAAA+TGG + chr3_3:62252971-62252990 Msa0463010:CDS 40.0%
! CACATTTTACCAAGGAAGGT+TGG + chr3_3:62253008-62253027 Msa0463010:CDS 40.0%
GATATTCTTCCAACCTTCCT+TGG - chr3_3:62253020-62253039 None:intergenic 40.0%
GCCTCAAATGTACTGTTAGA+TGG - chr3_3:62253172-62253191 None:intergenic 40.0%
TGCCTATACCAAATGAGTAG+CGG - chr3_3:62253290-62253309 None:intergenic 40.0%
TAGTGCCTTATAGCGAAACT+GGG - chr3_3:62253326-62253345 None:intergenic 40.0%
TAATGGTACTACTGCTACTG+GGG + chr3_3:62253375-62253394 Msa0463010:CDS 40.0%
!!! CTGGTTACATCTGGTTCTTT+TGG - chr3_3:62253463-62253482 None:intergenic 40.0%
TCATCTAAGCTGGTTACATC+TGG - chr3_3:62253472-62253491 None:intergenic 40.0%
GATGCTGTTGCATCAAGAAA+TGG + chr3_3:62253511-62253530 Msa0463010:CDS 40.0%
GGCAAACGTAGTTATAGCAT+CGG + chr3_3:62253577-62253596 Msa0463010:CDS 40.0%
GAATGCATTGAATGCCTTGA+TGG + chr3_3:62253601-62253620 Msa0463010:CDS 40.0%
CATTGAATGCCTTGATGGAA+TGG + chr3_3:62253606-62253625 Msa0463010:CDS 40.0%
TTTAGATGTGTTCCTTAGGC+AGG + chr3_3:62253666-62253685 Msa0463010:CDS 40.0%
AACCATGAGATCCTCAGATT+AGG - chr3_3:62253724-62253743 None:intergenic 40.0%
GGCGATGAATGTATGACAAA+AGG - chr3_3:62253784-62253803 None:intergenic 40.0%
TACAGAGGTTTGCAAAACCA+GGG - chr3_3:62253998-62254017 None:intergenic 40.0%
TTACAGAGGTTTGCAAAACC+AGG - chr3_3:62253999-62254018 None:intergenic 40.0%
AATCAAGCTCGTAGCAGCTA+GGG - chr3_3:62251276-62251295 None:intergenic 45.0%
CAATCAAGCACGTAACAGCT+AGG - chr3_3:62251440-62251459 None:intergenic 45.0%
!!! GGGTTCCAATTGGCTTTTGA+AGG - chr3_3:62251628-62251647 None:intergenic 45.0%
TTCCACCAGGAAACTATGGA+AGG + chr3_3:62251810-62251829 Msa0463010:CDS 45.0%
CAGGAAACTATGGAAGGTCT+GGG + chr3_3:62251816-62251835 Msa0463010:CDS 45.0%
!! CTCGTGATAGTGGCATGAAA+TGG + chr3_3:62251848-62251867 Msa0463010:CDS 45.0%
!! TTGGTGCTACTGAAGAAGAC+TGG + chr3_3:62251890-62251909 Msa0463010:CDS 45.0%
ACTGAAACTGTGCAGCTTCT+GGG - chr3_3:62252025-62252044 None:intergenic 45.0%
! ACTTTGAAGGGGAACAAAGC+CGG + chr3_3:62252308-62252327 Msa0463010:CDS 45.0%
CTCCTTGCTAAAATGTGACC+CGG - chr3_3:62252330-62252349 None:intergenic 45.0%
!! GGGTCACATTTTAGCAAGGA+GGG + chr3_3:62252329-62252348 Msa0463010:CDS 45.0%
GGAGGGCTGGAAGAATATTA+TGG + chr3_3:62252346-62252365 Msa0463010:CDS 45.0%
TTGATGCTTCAGAGGAAGAC+TGG + chr3_3:62252510-62252529 Msa0463010:CDS 45.0%
AGCTGCACAATTCCGCTTTA+AGG + chr3_3:62252640-62252659 Msa0463010:CDS 45.0%
ATCATTCTGTCTCTCGCTAC+TGG - chr3_3:62252738-62252757 None:intergenic 45.0%
ACACGTAAAGGAGGTAAAGG+AGG - chr3_3:62252776-62252795 None:intergenic 45.0%
TCGCTTGCAATTGACCTGAT+TGG - chr3_3:62252872-62252891 None:intergenic 45.0%
ATCCCAAGGTCAAAGCCAAT+TGG + chr3_3:62252915-62252934 Msa0463010:CDS 45.0%
!! GTCCAATTGGCTTTGACCTT+GGG - chr3_3:62252920-62252939 None:intergenic 45.0%
TCCTTGGTAAAATGTGTCCC+AGG - chr3_3:62253004-62253023 None:intergenic 45.0%
! GGGACACATTTTACCAAGGA+AGG + chr3_3:62253004-62253023 Msa0463010:CDS 45.0%
CAAAGGAACAATGGAGAGCT+TGG + chr3_3:62253110-62253129 Msa0463010:CDS 45.0%
AGAGCTTGGTCTAAGCTTGT+TGG + chr3_3:62253124-62253143 Msa0463010:CDS 45.0%
TTGAGGCTAGTGAAGCAGAT+TGG + chr3_3:62253185-62253204 Msa0463010:CDS 45.0%
! TATACCAAATGAGTAGCGGG+GGG - chr3_3:62253286-62253305 None:intergenic 45.0%
CTATACCAAATGAGTAGCGG+GGG - chr3_3:62253287-62253306 None:intergenic 45.0%
CCTATACCAAATGAGTAGCG+GGG - chr3_3:62253288-62253307 None:intergenic 45.0%
GCCTATACCAAATGAGTAGC+GGG - chr3_3:62253289-62253308 None:intergenic 45.0%
GTAGTGCCTTATAGCGAAAC+TGG - chr3_3:62253327-62253346 None:intergenic 45.0%
ACTACCATTAGCCGATGCAT+TGG + chr3_3:62253342-62253361 Msa0463010:CDS 45.0%
!! GTTTCCAATGCATCGGCTAA+TGG - chr3_3:62253349-62253368 None:intergenic 45.0%
! CTTTTCCTTTGTTGCAGAGC+AGG - chr3_3:62253409-62253428 None:intergenic 45.0%
TGCAGTCTTCTCATCTAAGC+TGG - chr3_3:62253482-62253501 None:intergenic 45.0%
GATGAGAAGACTGCATCTCT+TGG + chr3_3:62253487-62253506 Msa0463010:CDS 45.0%
CTACGTCTTCCATTCCATCA+AGG - chr3_3:62253618-62253637 None:intergenic 45.0%
TGTTCCTTAGGCAGGAACAT+AGG + chr3_3:62253674-62253693 Msa0463010:CDS 45.0%
GTTCCTTAGGCAGGAACATA+GGG + chr3_3:62253675-62253694 Msa0463010:CDS 45.0%
TTTCCCTATGTTCCTGCCTA+AGG - chr3_3:62253681-62253700 None:intergenic 45.0%
AGCCTAATCTGAGGATCTCA+TGG + chr3_3:62253719-62253738 Msa0463010:CDS 45.0%
!! AAACAACATGATGGTGGTGG+TGG - chr3_3:62253840-62253859 None:intergenic 45.0%
AGGTTTGCAAAACCAGGGAA+GGG - chr3_3:62253993-62254012 None:intergenic 45.0%
TAATGTCGTGGCCCAGATTG+TGG + chr3_3:62251232-62251251 Msa0463010:CDS 50.0%
CAATCAAGCTCGTAGCAGCT+AGG - chr3_3:62251277-62251296 None:intergenic 50.0%
TGCATTCGACAGCCAGTCAA+TGG - chr3_3:62251324-62251343 None:intergenic 50.0%
TAATGCTGTGGCCCAGATTG+TGG + chr3_3:62251395-62251414 Msa0463010:intron 50.0%
! CATCTTGTTTGGGGTGGGTT+TGG + chr3_3:62251474-62251493 Msa0463010:intron 50.0%
! TTGTTTGGGGTGGGTTTGGT+AGG + chr3_3:62251478-62251497 Msa0463010:intron 50.0%
! TGTTTGGGGTGGGTTTGGTA+GGG + chr3_3:62251479-62251498 Msa0463010:intron 50.0%
ATGGAACGCAGGGTTCCAAT+TGG - chr3_3:62251638-62251657 None:intergenic 50.0%
TGTTGAAGGCGAATGAGCCT+GGG + chr3_3:62251689-62251708 Msa0463010:CDS 50.0%
TGAGGCTTACCAAGGAAGCT+TGG + chr3_3:62251713-62251732 Msa0463010:CDS 50.0%
GACCTTCCATAGTTTCCTGG+TGG - chr3_3:62251815-62251834 None:intergenic 50.0%
CCAGACCTTCCATAGTTTCC+TGG - chr3_3:62251818-62251837 None:intergenic 50.0%
CCAGGAAACTATGGAAGGTC+TGG + chr3_3:62251815-62251834 Msa0463010:CDS 50.0%
GACTGAAACTGTGCAGCTTC+TGG - chr3_3:62252026-62252045 None:intergenic 50.0%
AGCTGCACAGTTTCAGTCCA+AGG + chr3_3:62252028-62252047 Msa0463010:CDS 50.0%
! ATCAGTACGTCTGAAGTGGC+AGG + chr3_3:62252118-62252137 Msa0463010:CDS 50.0%
TGTTCTTCCCTGCAAAGGTG+TGG - chr3_3:62252156-62252175 None:intergenic 50.0%
!!! CACGAGGCTTTTGGAGTTAG+TGG - chr3_3:62252242-62252261 None:intergenic 50.0%
CACTAACTCCAAAAGCCTCG+TGG + chr3_3:62252240-62252259 Msa0463010:CDS 50.0%
! CTTTGAAGGGGAACAAAGCC+GGG + chr3_3:62252309-62252328 Msa0463010:CDS 50.0%
!! AGCCGGGTCACATTTTAGCA+AGG + chr3_3:62252325-62252344 Msa0463010:CDS 50.0%
!! CGGGTCACATTTTAGCAAGG+AGG + chr3_3:62252328-62252347 Msa0463010:CDS 50.0%
!! CACATTTTAGCAAGGAGGGC+TGG + chr3_3:62252333-62252352 Msa0463010:CDS 50.0%
AGCGGAATTGTGCAGCTTCT+GGG - chr3_3:62252637-62252656 None:intergenic 50.0%
AAGCGGAATTGTGCAGCTTC+TGG - chr3_3:62252638-62252657 None:intergenic 50.0%
! TGTCTCTCGCTACTGGTTGA+AGG - chr3_3:62252731-62252750 None:intergenic 50.0%
CTCCTTTACGTGTAGAGCGA+GGG + chr3_3:62252783-62252802 Msa0463010:CDS 50.0%
TTCCCTCGCTCTACACGTAA+AGG - chr3_3:62252788-62252807 None:intergenic 50.0%
!! GGTCCAATTGGCTTTGACCT+TGG - chr3_3:62252921-62252940 None:intergenic 50.0%
GTGCAATGAAGGGGTCCAAT+TGG - chr3_3:62252933-62252952 None:intergenic 50.0%
! GCCTGGGACACATTTTACCA+AGG + chr3_3:62253000-62253019 Msa0463010:CDS 50.0%
CCCCGCTACTCATTTGGTAT+AGG + chr3_3:62253285-62253304 Msa0463010:intron 50.0%
AGCTGCCCAGTTTCGCTATA+AGG + chr3_3:62253318-62253337 Msa0463010:CDS 50.0%
CTGTACCTGCTCTGCAACAA+AGG + chr3_3:62253401-62253420 Msa0463010:CDS 50.0%
!! TTCTTTTGGGTGCGAAGGCA+AGG - chr3_3:62253449-62253468 None:intergenic 50.0%
!!! TCTGGTTCTTTTGGGTGCGA+AGG - chr3_3:62253454-62253473 None:intergenic 50.0%
TTCAGCACACGAGATTGGGA+AGG - chr3_3:62253557-62253576 None:intergenic 50.0%
TTCCCAATCTCGTGTGCTGA+AGG + chr3_3:62253556-62253575 Msa0463010:CDS 50.0%
TGCCTTCAGCACACGAGATT+GGG - chr3_3:62253561-62253580 None:intergenic 50.0%
TTGCCTTCAGCACACGAGAT+TGG - chr3_3:62253562-62253581 None:intergenic 50.0%
GGAATGGAAGACGTAGAGCA+AGG + chr3_3:62253622-62253641 Msa0463010:CDS 50.0%
TGAGGATCTCATGGTTGCAG+CGG + chr3_3:62253728-62253747 Msa0463010:CDS 50.0%
! GGATTTTCTCTTCCCTTCCC+TGG + chr3_3:62253978-62253997 Msa0463010:three_prime_UTR 50.0%
GAGGTTTGCAAAACCAGGGA+AGG - chr3_3:62253994-62254013 None:intergenic 50.0%
GTGTTGAAGGCGAATGAGCC+TGG + chr3_3:62251688-62251707 Msa0463010:CDS 55.0%
TCCTTGGTAAGCCTCATCCC+AGG - chr3_3:62251709-62251728 None:intergenic 55.0%
TGCTCTAGCCACACCTTTGC+AGG + chr3_3:62252145-62252164 Msa0463010:CDS 55.0%
GCTCTAGCCACACCTTTGCA+GGG + chr3_3:62252146-62252165 Msa0463010:CDS 55.0%
CCTTTGCAGGGAAGAACACG+CGG + chr3_3:62252158-62252177 Msa0463010:CDS 55.0%
CTTTGCAGGGAAGAACACGC+GGG + chr3_3:62252159-62252178 Msa0463010:CDS 55.0%
ATGGTATGCAGGTGTCCACG+AGG - chr3_3:62252258-62252277 None:intergenic 55.0%
CCTCGCTCTACACGTAAAGG+AGG - chr3_3:62252785-62252804 None:intergenic 55.0%
CCTCCTTTACGTGTAGAGCG+AGG + chr3_3:62252782-62252801 Msa0463010:CDS 55.0%
ACCTTGGGATGAGATGAGCG+TGG - chr3_3:62252905-62252924 None:intergenic 55.0%
! AATGAGTAGCGGGGGGAATC+AGG - chr3_3:62253279-62253298 None:intergenic 55.0%
GATTCCCCCCGCTACTCATT+TGG + chr3_3:62253279-62253298 Msa0463010:intron 55.0%
AGCGAAACTGGGCAGCTTCT+GGG - chr3_3:62253315-62253334 None:intergenic 55.0%
TAGCGAAACTGGGCAGCTTC+TGG - chr3_3:62253316-62253335 None:intergenic 55.0%
TTGCAGCGGCTTCAGTCTGT+TGG + chr3_3:62253742-62253761 Msa0463010:CDS 55.0%
!! CAACATGATGGTGGTGGTGG+TGG - chr3_3:62253837-62253856 None:intergenic 55.0%
GAGGTTCGCGGCCACAATCT+GGG - chr3_3:62251246-62251265 None:intergenic 60.0%
AGAGGTTCGCGGCCACAATC+TGG - chr3_3:62251247-62251266 None:intergenic 60.0%
GAGGTTGGCGGCCACAATCT+GGG - chr3_3:62251409-62251428 None:intergenic 60.0%
AGAGGTTGGCGGCCACAATC+TGG - chr3_3:62251410-62251429 None:intergenic 60.0%
AGGCGAATGAGCCTGGGATG+AGG + chr3_3:62251695-62251714 Msa0463010:CDS 60.0%
GCCTGGGATGAGGCTTACCA+AGG + chr3_3:62251705-62251724 Msa0463010:CDS 60.0%
CCGCGTGTTCTTCCCTGCAA+AGG - chr3_3:62252161-62252180 None:intergenic 60.0%
! GCAGGTGTCCACGAGGCTTT+TGG - chr3_3:62252251-62252270 None:intergenic 60.0%
GCCACGCTCATCTCATCCCA+AGG + chr3_3:62252901-62252920 Msa0463010:CDS 60.0%
CGATGGTGCGGTGACTGTGA+TGG - chr3_3:62253805-62253824 None:intergenic 60.0%
!! TGGTGGTGATGGCGATGGTG+CGG - chr3_3:62253817-62253836 None:intergenic 60.0%
!! CATGATGGTGGTGGTGGTGG+TGG - chr3_3:62253834-62253853 None:intergenic 60.0%
TGCAGGGAAGAACACGCGGG+AGG + chr3_3:62252162-62252181 Msa0463010:CDS 65.0%
!! GGTGGTGGTGGTGATGGCGA+TGG - chr3_3:62253822-62253841 None:intergenic 65.0%
!! GGTGGTGGTGGTGGTGGTGA+TGG - chr3_3:62253828-62253847 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 62251200 62254061 62251200 ID=Msa0463010;Name=Msa0463010
chr3_3 mRNA 62251200 62254061 62251200 ID=Msa0463010-mRNA-1;Parent=Msa0463010;Name=Msa0463010-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.75|0.8|1|1|1|5|287|699
chr3_3 exon 62251200 62251364 62251200 ID=Msa0463010-mRNA-1:exon:13251;Parent=Msa0463010-mRNA-1
chr3_3 exon 62251586 62251927 62251586 ID=Msa0463010-mRNA-1:exon:13252;Parent=Msa0463010-mRNA-1
chr3_3 exon 62252017 62252547 62252017 ID=Msa0463010-mRNA-1:exon:13253;Parent=Msa0463010-mRNA-1
chr3_3 exon 62252629 62253222 62252629 ID=Msa0463010-mRNA-1:exon:13254;Parent=Msa0463010-mRNA-1
chr3_3 exon 62253307 62254061 62253307 ID=Msa0463010-mRNA-1:exon:13255;Parent=Msa0463010-mRNA-1
chr3_3 CDS 62251200 62251364 62251200 ID=Msa0463010-mRNA-1:cds;Parent=Msa0463010-mRNA-1
chr3_3 CDS 62251586 62251927 62251586 ID=Msa0463010-mRNA-1:cds;Parent=Msa0463010-mRNA-1
chr3_3 CDS 62252017 62252547 62252017 ID=Msa0463010-mRNA-1:cds;Parent=Msa0463010-mRNA-1
chr3_3 CDS 62252629 62253222 62252629 ID=Msa0463010-mRNA-1:cds;Parent=Msa0463010-mRNA-1
chr3_3 CDS 62253307 62253774 62253307 ID=Msa0463010-mRNA-1:cds;Parent=Msa0463010-mRNA-1
chr3_3 three_prime_UTR 62253775 62254061 62253775 ID=Msa0463010-mRNA-1:three_prime_utr;Parent=Msa0463010-mRNA-1
Gene Sequence

>Msa0463010

ATGGTTGTGCTGCGTAGATGCATCAAAAACTTTAATGTCGTGGCCCAGATTGTGGCCGCGAACCTCTTTAAAACCCTAGCTGCTACGAGCTTGATTGACTTTTTCTCAAATTATCTTGTTTCCATTGACTGGCTGTCGAATGCAGTCTACGCAATCTCAATCATGGACATTTTTCATCGCACAAGGTCAAGGATGTCTACTTCACCTTCAAAAGCCAATTGGAACCCTGCGTTCCATAAGATCTTTGTTGAGTTATGTGTCAAAGAAGTGTTGAAGGCGAATGAGCCTGGGATGAGGCTTACCAAGGAAGCTTGGAAGAACATTGTTGGATCCTTTTATGAAAAGACTGGAGTGGAGTACGACAAAAAACAATTCAAGAATCATTATGATTCCACCAGGAAACTATGGAAGGTCTGGGATAAGTTGACTCGTGATAGTGGCATGAAATGGGATCCAAAAACTGGAAAGTTTGGTGCTACTGAAGAAGACTGGTGCGATTATATAAAGGAAAACCCAGAAGCTGCACAGTTTCAGTCCAAGGAAATCCAGTTTAAAGAAGAATTGGATATCATCTTTGACGGAGAAATGCCTCCTGAAGAAATAAAAAAATCAGTACGTCTGAAGTGGCAGGATAATGCTCTAGCCACACCTTTGCAGGGAAGAACACGCGGGAGGAAGCGCAAGTGTGTTATTAAATATGAAATGGAGACTTCCGAAATGGCTAATTCTCCACTAACTCCAAAAGCCTCGTGGACACCTGCATACCATAAAATATTTGTTGACTTATGCCTTGAAGAAACTTTGAAGGGGAACAAAGCCGGGTCACATTTTAGCAAGGAGGGCTGGAAGAATATTATGGGATACTTTTATGCAAAGACCGGTGTGAGATATGACAAAAGACAAATTAAGAATCACTATGATTTCACCAGAAAACAGTGGAAAATCTGGGTTAAGTTGATTGGTGATGATAACATGAAATGGGACCCAAAGACCAATACATTTGATGCTTCAGAGGAAGACTGGCTTGATTATCTAAAGGAAAACCCAGAAGCTGCACAATTCCGCTTTAAGGAAATCCCATTTCCCGAAAAATTGGATATCATCTATGCTGAAAGTATACAAACTGGGGAAATGCAACCTTCAACCAGTAGCGAGAGACAGAATGATGATTCAGCAGCTACACCTCCTTTACCTCCTTTACGTGTAGAGCGAGGGAAGAAACATAAGAGTATTAATGAGGATTTTGACTTTAAGAATGCTATTGTGATGAATGCTACACCAATCAGGTCAATTGCAAGCGAGCGAAGCATGCCACGCTCATCTCATCCCAAGGTCAAAGCCAATTGGACCCCTTCATTGCACAAGACCTTTATTGATCTATGTCTGCAGGAGACATTAAATGGAAATAAGCCTGGGACACATTTTACCAAGGAAGGTTGGAAGAATATCATAGATTCATTTTATTTGAAATCTGGTTTCAATTATGGTAGATTACAATTTAAGAATCACTGGGATAATACAAAGGAACAATGGAGAGCTTGGTCTAAGCTTGTTGGCACTAGTTACATGAAATGGGATCCATCTAACAGTACATTTGAGGCTAGTGAAGCAGATTGGACTAAATATTTAAAGGCAAACCCAGAAGCTGCCCAGTTTCGCTATAAGGCACTACCATTAGCCGATGCATTGGAAACTCTCTTTAATGGTACTACTGCTACTGGGGAGACTGTACCTGCTCTGCAACAAAGGAAAAGTGATGACAGCGTTAATACCTTGCCTTCGCACCCAAAAGAACCAGATGTAACCAGCTTAGATGAGAAGACTGCATCTCTTGGTGATGCTGTTGCATCAAGAAATGGCGTGACTATTCAAAAGAATGCCTTCCCAATCTCGTGTGCTGAAGGCAAACGTAGTTATAGCATCGGTGAATGCATTGAATGCCTTGATGGAATGGAAGACGTAGAGCAAGGAAGTGACCTCTATTTGTTTGCTTTAGATGTGTTCCTTAGGCAGGAACATAGGGAAATTTTTCTCCAGTTGAAAAAGCCTAATCTGAGGATCTCATGGTTGCAGCGGCTTCAGTCTGTTGGTCAAGCTTAA
Protein sequence

>Msa0463010

MVVLRRCIKNFNVVAQIVAANLFKTLAATSLIDFFSNYLVSIDWLSNAVYAISIMDIFHRTRSRMSTSPSKANWNPAFHKIFVELCVKEVLKANEPGMRLTKEAWKNIVGSFYEKTGVEYDKKQFKNHYDSTRKLWKVWDKLTRDSGMKWDPKTGKFGATEEDWCDYIKENPEAAQFQSKEIQFKEELDIIFDGEMPPEEIKKSVRLKWQDNALATPLQGRTRGRKRKCVIKYEMETSEMANSPLTPKASWTPAYHKIFVDLCLEETLKGNKAGSHFSKEGWKNIMGYFYAKTGVRYDKRQIKNHYDFTRKQWKIWVKLIGDDNMKWDPKTNTFDASEEDWLDYLKENPEAAQFRFKEIPFPEKLDIIYAESIQTGEMQPSTSSERQNDDSAATPPLPPLRVERGKKHKSINEDFDFKNAIVMNATPIRSIASERSMPRSSHPKVKANWTPSLHKTFIDLCLQETLNGNKPGTHFTKEGWKNIIDSFYLKSGFNYGRLQFKNHWDNTKEQWRAWSKLVGTSYMKWDPSNSTFEASEADWTKYLKANPEAAQFRYKALPLADALETLFNGTTATGETVPALQQRKSDDSVNTLPSHPKEPDVTSLDEKTASLGDAVASRNGVTIQKNAFPISCAEGKRSYSIGECIECLDGMEDVEQGSDLYLFALDVFLRQEHREIFLQLKKPNLRISWLQRLQSVGQA*