AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0312530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0312530 MtrunA17_Chr2g0281781 96.072 891 34 1 1 891 1 890 0.0 1764
Msa0312530 MtrunA17_Chr2g0318031 35.570 894 441 30 1 853 1 800 2.53e-119 389
Msa0312530 MtrunA17_Chr1g0187491 38.809 554 248 25 1 509 1 508 6.80e-80 282
Msa0312530 MtrunA17_Chr1g0166471 33.022 536 273 18 1 503 1 483 1.26e-60 224
Msa0312530 MtrunA17_Chr8g0344661 33.784 222 126 4 1 220 1 203 1.18e-31 134
Msa0312530 MtrunA17_Chr3g0128441 26.941 219 123 3 7 219 11 198 7.74e-15 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0312530 AT1G61100.1 38.540 877 417 32 1 848 1 784 5.19e-146 452
Msa0312530 AT1G61100.2 38.540 877 416 32 1 848 1 783 6.80e-146 451
Msa0312530 AT4G27430.1 36.964 863 447 30 1 846 1 783 4.88e-124 401
Msa0312530 AT4G27430.2 36.964 863 447 30 1 846 1 783 4.88e-124 401
Msa0312530 AT5G43310.5 35.448 536 235 19 1 507 1 454 1.88e-70 253
Msa0312530 AT5G43310.4 35.448 536 235 19 1 507 1 454 2.64e-70 253
Msa0312530 AT5G43310.3 35.448 536 235 19 1 507 1 454 2.64e-70 253
Msa0312530 AT5G43310.2 35.448 536 235 19 1 507 1 454 3.60e-70 253
Msa0312530 AT3G14172.1 37.037 216 113 3 7 220 7 201 2.45e-34 142
Msa0312530 AT5G43310.1 31.956 363 151 16 159 507 231 511 9.75e-33 137
Msa0312530 AT5G43310.1 60.000 105 41 1 1 104 1 105 8.45e-30 128
Msa0312530 AT3G14172.2 35.047 214 112 3 7 220 7 193 1.07e-28 124
Msa0312530 AT1G17360.1 31.839 223 115 5 1 220 1 189 2.06e-27 120
Msa0312530 AT1G72410.2 31.839 223 122 5 1 220 1 196 1.04e-24 111
Msa0312530 AT1G72410.1 31.839 223 122 5 1 220 1 196 1.07e-24 111
Msa0312530 AT3G14172.3 32.370 173 94 3 50 220 12 163 1.07e-17 89.0

Find 166 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCATCCAACACTGCTTTC+TGG 0.103763 2_4:+7704173 Msa0312530:CDS
CATTTGGAGCATCACGTTTA+AGG 0.193169 2_4:+7705214 Msa0312530:CDS
GTTTATTGTTGATAACAATT+TGG 0.222809 2_4:+7707270 Msa0312530:CDS
AAAAGCATGCAGATGATCTT+TGG 0.249753 2_4:+7705874 Msa0312530:CDS
AGCTATTATTCTTGTTGTTC+TGG 0.250738 2_4:-7705995 None:intergenic
CTTTCCCTGATCTTTGTAAC+TGG 0.257701 2_4:-7707127 None:intergenic
GCATTAATTTCAAGGATTTA+TGG 0.262511 2_4:+7705847 Msa0312530:CDS
TCCGCAATTTCACGATTCTT+TGG 0.266625 2_4:-7707025 None:intergenic
TAACCTCTCAAAGGTGGATT+TGG 0.274750 2_4:-7704200 None:intergenic
GATTTCGCTGCAACGCCTTT+TGG 0.284161 2_4:+7705083 Msa0312530:CDS
TTTAACAGGAAGATGAAATT+AGG 0.285960 2_4:+7707961 Msa0312530:intron
GATTCCAGTGATCCTGATTC+AGG 0.296973 2_4:+7706476 Msa0312530:CDS
ATCATTTGATTTATTGTGTT+TGG 0.297241 2_4:-7706786 None:intergenic
CAAATACTATAGGCACATTT+GGG 0.300601 2_4:-7707315 None:intergenic
ATCACCAACCTTCTGTTTGA+TGG 0.301643 2_4:-7706699 None:intergenic
TCAAATACTATAGGCACATT+TGG 0.314149 2_4:-7707316 None:intergenic
ATCTTCTGATCCTCTTCCCT+TGG 0.314858 2_4:-7707245 None:intergenic
CAAATTGACTTTCAATCTGC+TGG 0.325945 2_4:-7704497 None:intergenic
GGCTTTCTGTTTCTAGAAAT+CGG 0.328726 2_4:-7707772 None:intergenic
CTAAAGGTGGATACTCTATT+AGG 0.346591 2_4:+7704143 Msa0312530:CDS
TCAATAGAAGCTCTTCTATC+AGG 0.350159 2_4:-7707646 None:intergenic
GATGCAATCGATTGATGTTC+AGG 0.360802 2_4:+7706919 Msa0312530:CDS
GATGATTCCTTCATGATTCA+AGG 0.363422 2_4:+7707394 Msa0312530:CDS
GTTCGTGAGAAAATAGCTTC+TGG 0.373823 2_4:+7704070 Msa0312530:CDS
AAGATAGATGCGGCGGAGAC+TGG 0.377811 2_4:+7706878 Msa0312530:CDS
TATTCTTGTTGTTCTGGTCA+TGG 0.378692 2_4:-7705989 None:intergenic
CTGTTTCTAGAAATCGGTTC+AGG 0.383139 2_4:-7707766 None:intergenic
ACTTCATTGAAATCCATGTT+TGG 0.387757 2_4:-7707001 None:intergenic
TCAACTACATCACTCCAAAA+AGG 0.388918 2_4:+7706606 Msa0312530:CDS
TCTTCTGATCCTCTTCCCTT+GGG 0.389676 2_4:-7707244 None:intergenic
AGATGAAATTAGGAAGCAAT+TGG 0.394685 2_4:+7707971 Msa0312530:CDS
ATCGCACATGGAGTGTGAAC+TGG 0.394964 2_4:-7703697 None:intergenic
TGGATCATCAGGAATTATAC+TGG 0.395796 2_4:+7705950 Msa0312530:CDS
AAAACCATACAGAGGTCATT+TGG 0.405408 2_4:-7707547 None:intergenic
AGCATAATCAAGAATGGTCT+TGG 0.405937 2_4:-7703869 None:intergenic
AAAGCATGCAGATGATCTTT+GGG 0.406887 2_4:+7705875 Msa0312530:CDS
TACTTATATCTGTCTTCCAT+TGG 0.407496 2_4:-7707447 None:intergenic
TCAGATTCACTCCCTGAATC+AGG 0.407557 2_4:-7706488 None:intergenic
CAGTTAAATGATGCACTTGA+AGG 0.410535 2_4:+7704921 Msa0312530:intron
GTCGATGTCAGTTGCAATCC+CGG 0.410829 2_4:+7704533 Msa0312530:CDS
ATTCTTTGAAGGATGATAAG+AGG 0.416935 2_4:+7706537 Msa0312530:CDS
GGAAGCTTGCATTAATTTCA+AGG 0.419305 2_4:+7705839 Msa0312530:CDS
AGACTCAAACAATTCTTTGA+AGG 0.423072 2_4:+7706526 Msa0312530:CDS
TTTGAACCATAGGCTTTCTT+GGG 0.426257 2_4:-7707801 None:intergenic
ATTCTTGTTGTTCTGGTCAT+GGG 0.427532 2_4:-7705988 None:intergenic
TGTTAGCACACCTGCAGTAC+TGG 0.428316 2_4:+7704446 Msa0312530:CDS
TAGGAAGCAATTGGAAGAAA+AGG 0.431957 2_4:+7707980 Msa0312530:CDS
TATGAAGGCATTTGCTGACT+AGG 0.433103 2_4:-7706317 None:intergenic
ATATATGGCGGTACGTTGTA+AGG 0.434933 2_4:-7706278 None:intergenic
GTGTCCCAGTTACAAAGATC+AGG 0.436622 2_4:+7707122 Msa0312530:CDS
TATACACGTAGTCTTGTTGC+TGG 0.437080 2_4:+7705147 Msa0312530:CDS
AAACAGAAACAGTTCTGTTA+AGG 0.437731 2_4:+7708136 Msa0312530:CDS
GGAAACTTGCCGCACACAAA+TGG 0.438828 2_4:+7704785 Msa0312530:intron
TGTGTCGGTTTCTACCTTGT+TGG 0.440856 2_4:-7707491 None:intergenic
GAAAGAAACCTTGTTCTAGT+TGG 0.443676 2_4:-7703907 None:intergenic
TTCGTGAGAAAATAGCTTCT+GGG 0.443859 2_4:+7704071 Msa0312530:CDS
GCGGCGGAGACTGGAATTGA+TGG 0.446148 2_4:+7706887 Msa0312530:CDS
ATGGAAGACAGATATAAGTA+TGG 0.447475 2_4:+7707450 Msa0312530:CDS
TTCCAAACCATACCTTCATC+CGG 0.449240 2_4:-7704552 None:intergenic
TCTACAGACAGTATTCCTTC+TGG 0.454903 2_4:+7706017 Msa0312530:CDS
AGGGAAGAGGATCAGAAGAT+TGG 0.458212 2_4:+7707248 Msa0312530:CDS
GTTAAAGATGAGATCTCTAA+AGG 0.458836 2_4:+7704127 Msa0312530:CDS
AAGAATGGTCTTGGAATCCA+TGG 0.465531 2_4:-7703860 None:intergenic
ACTTATATCTGTCTTCCATT+GGG 0.465897 2_4:-7707446 None:intergenic
GGTGTTGGTCGAACCGTGCC+TGG 0.467459 2_4:+7708047 Msa0312530:CDS
CATCTATCTTCAAAAGGCTC+TGG 0.470474 2_4:-7706865 None:intergenic
CTATCACCATCAAATACTAT+AGG 0.472793 2_4:-7707325 None:intergenic
TCAGCAGCATAAGTATTTAA+CGG 0.473822 2_4:-7707211 None:intergenic
TAGGCACATTTGGGGAATCA+TGG 0.474102 2_4:-7707306 None:intergenic
ATTGTGACTCAAAGAGATGA+AGG 0.481610 2_4:+7707058 Msa0312530:CDS
AATGTGCCTATAGTATTTGA+TGG 0.482716 2_4:+7707319 Msa0312530:CDS
GGAGGATATCCTTGGTATGA+AGG 0.485665 2_4:-7706332 None:intergenic
TCATTGCAGAAGGTCCATAA+AGG 0.485905 2_4:+7706731 Msa0312530:CDS
ATGAAGGAATCATCAATGAT+AGG 0.486228 2_4:-7707385 None:intergenic
ACTGAAAGAACTGCATCTTC+AGG 0.487493 2_4:+7708026 Msa0312530:CDS
AAATGAAAGAGGATCGAAGC+TGG 0.490065 2_4:+7707081 Msa0312530:CDS
ATAGGCTTTCTTGGGAGAGA+TGG 0.490460 2_4:-7707793 None:intergenic
GAAGGTAAGGAGGATATCCT+TGG 0.491685 2_4:-7706340 None:intergenic
ACCTTCAAAATAATATGCAT+TGG 0.495082 2_4:+7706357 Msa0312530:CDS
ACTCCCTGAATCAGGATCAC+TGG 0.498072 2_4:-7706480 None:intergenic
CCGCCGCATCTATCTTCAAA+AGG 0.498419 2_4:-7706871 None:intergenic
ATCTCTCCCAAGAAAGCCTA+TGG 0.499073 2_4:+7707795 Msa0312530:CDS
CTTCATCAATCTTCTACCCA+TGG 0.499203 2_4:+7703843 Msa0312530:exon
TTTGCAACGCGATTCAGGAT+TGG 0.499793 2_4:+7707567 Msa0312530:CDS
TCAAAAGAGCCAAAGGGAAA+AGG 0.504709 2_4:+7707819 Msa0312530:CDS
GAATGCATTATCAAAGATAG+AGG 0.504852 2_4:+7707522 Msa0312530:CDS
AAACAGAGCATAATCAAGAA+TGG 0.522503 2_4:-7703875 None:intergenic
AGGAGAAATGGAAATGAGAG+TGG 0.523974 2_4:+7706626 Msa0312530:CDS
TATGCATTGGTCTTCTAACA+TGG 0.529226 2_4:+7706370 Msa0312530:CDS
TGAAAATAACCTCTCAAAGG+TGG 0.529543 2_4:-7704206 None:intergenic
AAAGTCAATTTCATAGTCCA+TGG 0.536400 2_4:-7707611 None:intergenic
TGAGTGATGTGTAGTGATAG+TGG 0.538751 2_4:-7703780 None:intergenic
GGAGAACCAGAAAGCAGTGT+TGG 0.543361 2_4:-7704179 None:intergenic
TCATCACAACCCAAGGGAAG+AGG 0.543533 2_4:+7707235 Msa0312530:CDS
ATTCCAGTGATCCTGATTCA+GGG 0.543913 2_4:+7706477 Msa0312530:CDS
TAAGGCCATGGCATATGCAT+TGG 0.545284 2_4:-7706260 None:intergenic
TTTCCCTGATCTTTGTAACT+GGG 0.548685 2_4:-7707126 None:intergenic
AACCAGAAAGCAGTGTTGGA+TGG 0.552261 2_4:-7704175 None:intergenic
TCGCACATGGAGTGTGAACT+GGG 0.553572 2_4:-7703696 None:intergenic
TGCTGATTCATCACAACCCA+AGG 0.554416 2_4:+7707228 Msa0312530:CDS
AGAACTGCATCTTCAGGTGT+TGG 0.554456 2_4:+7708032 Msa0312530:CDS
TGGATTCTGTTGAAGCCTCA+AGG 0.556644 2_4:+7707587 Msa0312530:CDS
TTCATAGTCCATGGTCCTTG+AGG 0.556923 2_4:-7707602 None:intergenic
TCCAAACCATACCTTCATCC+GGG 0.558364 2_4:-7704551 None:intergenic
AACAGTTCTGTTAAGGTCAG+AGG 0.558395 2_4:+7708143 Msa0312530:CDS
GGAGCCAAATGACCTCTGTA+TGG 0.559604 2_4:+7707543 Msa0312530:CDS
TCAGTTGCAATCCCGGATGA+AGG 0.560335 2_4:+7704540 Msa0312530:CDS
GAGAAATCTCATCATAGGAA+AGG 0.561136 2_4:+7706425 Msa0312530:CDS
GCTGAGGAAGATGCATCTGA+TGG 0.561920 2_4:+7706812 Msa0312530:CDS
ATAATCTTTCTGATTCCCAA+TGG 0.561944 2_4:+7707431 Msa0312530:CDS
GGCGGTACGTTGTAAGGCCA+TGG 0.562859 2_4:-7706272 None:intergenic
AGCACTACTTCGAAAAGAGC+AGG 0.563412 2_4:+7705116 Msa0312530:CDS
AGAGATGAAGGAAATGAAAG+AGG 0.564503 2_4:+7707070 Msa0312530:CDS
ACAAACCTCTCCAGTACTGC+AGG 0.565325 2_4:-7704456 None:intergenic
CTTGCGTTTCCATTTGTGTG+CGG 0.566813 2_4:-7704794 None:intergenic
CTTGTTGTTCTGGTCATGGG+CGG 0.570173 2_4:-7705985 None:intergenic
TGCTAGTTCTGCTCCAAACA+TGG 0.572416 2_4:+7706988 Msa0312530:CDS
AAGAAAGAAACAAAGACAGC+AGG 0.573481 2_4:-7703730 None:intergenic
AAACTGACCTTGAATCATGA+AGG 0.574019 2_4:-7707401 None:intergenic
TTTGCTATTTGATCTTTACC+AGG 0.575386 2_4:-7708065 None:intergenic
TCCAAAGAATCGTGAAATTG+CGG 0.580291 2_4:+7707024 Msa0312530:CDS
AGGAAGATGCATCTGATGGA+GGG 0.584311 2_4:+7706816 Msa0312530:CDS
ACAAAGATCAGGGAAAGTAT+TGG 0.586644 2_4:+7707133 Msa0312530:CDS
TATTGAAAATAACCTCTCAA+AGG 0.587430 2_4:-7704209 None:intergenic
TAAATCAAATGATGCTGCTG+AGG 0.589260 2_4:+7706796 Msa0312530:CDS
CTATGGTTCAAAAGAGCCAA+AGG 0.589709 2_4:+7707812 Msa0312530:CDS
TATTTGATCTTTACCAGGCA+CGG 0.589815 2_4:-7708060 None:intergenic
GAAACCATCAAACAGAAGGT+TGG 0.595462 2_4:+7706695 Msa0312530:CDS
TGAAGAAACCATCAAACAGA+AGG 0.599349 2_4:+7706691 Msa0312530:CDS
TGTTGAAGCCTCAAGGACCA+TGG 0.604282 2_4:+7707594 Msa0312530:CDS
TCTCCAAATCCACCTTTGAG+AGG 0.606329 2_4:+7704197 Msa0312530:CDS
GTGCTATTCGAGACTCCAAA+AGG 0.607180 2_4:-7705098 None:intergenic
AGGAGTTGACACTAAAGAAG+AGG 0.608965 2_4:+7704941 Msa0312530:CDS
CAGCAAATGCCTTCATACCA+AGG 0.609523 2_4:+7706323 Msa0312530:CDS
TATGGTTCAAAAGAGCCAAA+GGG 0.610400 2_4:+7707813 Msa0312530:CDS
CAGAAAGCAGTGTTGGATGG+AGG 0.610749 2_4:-7704172 None:intergenic
AACTCACACCAACTAGAACA+AGG 0.613594 2_4:+7703899 Msa0312530:CDS
GAGGTTAAGTGATTCTGCAA+AGG 0.615197 2_4:+7704817 Msa0312530:CDS
TAGGCCATGGTGAATCTACA+AGG 0.615491 2_4:+7708236 Msa0312530:three_prime_UTR
TGCACTTGAATCATTGCAGA+AGG 0.618725 2_4:+7706721 Msa0312530:CDS
GCAATTGGAAGAAAAGGCGA+TGG 0.619942 2_4:+7707986 Msa0312530:CDS
TTTGTGTTGAGAAACTCTGA+AGG 0.622804 2_4:+7706950 Msa0312530:CDS
ACTTCGAAAAGAGCAGGCAA+TGG 0.623572 2_4:+7705122 Msa0312530:CDS
ATGCATTGGTCTTCTAACAT+GGG 0.624478 2_4:+7706371 Msa0312530:CDS
GAGGAAGATGCATCTGATGG+AGG 0.626415 2_4:+7706815 Msa0312530:CDS
GATCCAGAAAATGAGAGTGC+TGG 0.627508 2_4:-7705933 None:intergenic
GCACACCTGCAGTACTGGAG+AGG 0.629725 2_4:+7704451 Msa0312530:CDS
TGTCCCAGTTACAAAGATCA+GGG 0.630317 2_4:+7707123 Msa0312530:CDS
ATATGCCAATGCATATGCCA+TGG 0.630372 2_4:+7706255 Msa0312530:CDS
AAAAGGCGATGGAACGACAG+AGG 0.633665 2_4:+7707997 Msa0312530:CDS
AGATGTGAACTTATCGCACA+TGG 0.643303 2_4:+7706223 Msa0312530:intron
TGAAGATTATACATATATGG+CGG 0.644615 2_4:-7706290 None:intergenic
GGAATATGAAGAATCGCACA+TGG 0.648565 2_4:-7703709 None:intergenic
CGCACACAAATGGAAACGCA+AGG 0.655355 2_4:+7704795 Msa0312530:CDS
AAAGATGAGATCTCTAAAGG+TGG 0.655907 2_4:+7704130 Msa0312530:CDS
TTTACCTTGTAGATTCACCA+TGG 0.665569 2_4:-7708240 None:intergenic
AAATACTATAGGCACATTTG+GGG 0.667223 2_4:-7707314 None:intergenic
AGAATGGTCTTGGAATCCAT+GGG 0.669793 2_4:-7703859 None:intergenic
AATTTGAGATGAGAAATGAA+AGG 0.677579 2_4:-7704103 None:intergenic
TAGTGTCATTCAGTTCAATG+TGG 0.678687 2_4:+7708189 Msa0312530:three_prime_UTR
AGATCTAACATCTTCCAACA+AGG 0.687176 2_4:+7707477 Msa0312530:CDS
CGCGTTGCAAAACCATACAG+AGG 0.690263 2_4:-7707555 None:intergenic
AGATTGATGAAGAACAACGT+TGG 0.694386 2_4:-7703832 None:intergenic
GCTGATTCATCACAACCCAA+GGG 0.696947 2_4:+7707229 Msa0312530:CDS
CCAGAAAATGAGAGTGCTGG+TGG 0.704940 2_4:-7705930 None:intergenic
ACACAAATGGAAACGCAAGG+AGG 0.763676 2_4:+7704798 Msa0312530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTATAAATAAACTTTT+AGG + chr2_4:7708317-7708336 Msa0312530:three_prime_UTR 10.0%
!! ATAAGAGAATATAACAAAAT+GGG - chr2_4:7703939-7703958 None:intergenic 15.0%
!! AATAAGAGAATATAACAAAA+TGG - chr2_4:7703940-7703959 None:intergenic 15.0%
!!! TTTTTCACAATTTACTTATT+GGG + chr2_4:7703988-7704007 Msa0312530:intron 15.0%
!!! ACTTTTTTGATTTAATCTTT+TGG + chr2_4:7704238-7704257 Msa0312530:intron 15.0%
!! TAAATAAATTTGCCATATTT+AGG - chr2_4:7705311-7705330 None:intergenic 15.0%
!!! AATTGTGTTTTTTATGTTAA+AGG + chr2_4:7705338-7705357 Msa0312530:intron 15.0%
!!! TTTTGAAGATTATACATATA+TGG - chr2_4:7706296-7706315 None:intergenic 15.0%
!!! GTATTGTGAATTTTTTATTA+TGG + chr2_4:7707841-7707860 Msa0312530:intron 15.0%
!!! CACTTATAAGTTTTTTTTTT+TGG + chr2_4:7707870-7707889 Msa0312530:intron 15.0%
!!! CTTTTTCACAATTTACTTAT+TGG + chr2_4:7703987-7704006 Msa0312530:intron 20.0%
!! CAATCATATAATTGAATCAA+TGG - chr2_4:7704314-7704333 None:intergenic 20.0%
!!! GACTTATTTAAGTTGTTTTA+TGG + chr2_4:7704333-7704352 Msa0312530:intron 20.0%
!!! ATGCAAAATAAATGTGTTTT+TGG + chr2_4:7704370-7704389 Msa0312530:intron 20.0%
!!! TGCAAAATAAATGTGTTTTT+GGG + chr2_4:7704371-7704390 Msa0312530:intron 20.0%
!!! TTTTTTTTGATAGATTTGTG+CGG + chr2_4:7704421-7704440 Msa0312530:intron 20.0%
!!! ACATAGATTCATTGATTTAT+AGG - chr2_4:7704678-7704697 None:intergenic 20.0%
!! AATAATCAATAGAGATCATT+AGG - chr2_4:7704873-7704892 None:intergenic 20.0%
!! TGAATTCAATATATGTTGAT+TGG + chr2_4:7705739-7705758 Msa0312530:intron 20.0%
!! TTGAAACTAATTCTAAATCT+TGG + chr2_4:7705800-7705819 Msa0312530:intron 20.0%
!! TTTGTAGAAAACAAAAAAGA+CGG + chr2_4:7706053-7706072 Msa0312530:CDS 20.0%
!! TACAATTAAGGTAAAAGAAA+AGG - chr2_4:7706098-7706117 None:intergenic 20.0%
!! AAAAAATCAAAGATTTGACT+TGG - chr2_4:7706157-7706176 None:intergenic 20.0%
!!! ATCATTTGATTTATTGTGTT+TGG - chr2_4:7706789-7706808 None:intergenic 20.0%
!!! GTTTATTGTTGATAACAATT+TGG + chr2_4:7707270-7707289 Msa0312530:CDS 20.0%
!!! TCTATTTTGAGTAACTATAT+AGG - chr2_4:7708363-7708382 None:intergenic 20.0%
!! AATTTGAGATGAGAAATGAA+AGG - chr2_4:7704106-7704125 None:intergenic 25.0%
! TATTGAAAATAACCTCTCAA+AGG - chr2_4:7704212-7704231 None:intergenic 25.0%
!! TGTTTCTGTATCAATTGATT+AGG + chr2_4:7704601-7704620 Msa0312530:intron 25.0%
! TGTATCAATTGATTAGGTTT+AGG + chr2_4:7704607-7704626 Msa0312530:intron 25.0%
!!! AATTAACAAGTGTTGTTTCT+AGG - chr2_4:7704648-7704667 None:intergenic 25.0%
!! TAAATTTTCCATTGTGTATC+AGG + chr2_4:7704764-7704783 Msa0312530:intron 25.0%
! TAATGAACTAGTCAAACAAA+GGG - chr2_4:7705024-7705043 None:intergenic 25.0%
!! GTATATTTTGCAAATGCATT+TGG + chr2_4:7705198-7705217 Msa0312530:CDS 25.0%
! CTTATATGGATACTGTAAAT+TGG + chr2_4:7705267-7705286 Msa0312530:intron 25.0%
!! CTTTTATGTCTGAAAAGAAA+GGG - chr2_4:7705435-7705454 None:intergenic 25.0%
!! ACTTTTATGTCTGAAAAGAA+AGG - chr2_4:7705436-7705455 None:intergenic 25.0%
! AATTTCACAATCTACAAAGT+AGG - chr2_4:7705475-7705494 None:intergenic 25.0%
! TGTGAAATTTCACTTATCTA+AGG + chr2_4:7705486-7705505 Msa0312530:intron 25.0%
! GTGAAATTTCACTTATCTAA+GGG + chr2_4:7705487-7705506 Msa0312530:intron 25.0%
! TGAAATTTCACTTATCTAAG+GGG + chr2_4:7705488-7705507 Msa0312530:intron 25.0%
! AAATTTCACCCTAATCTAAT+AGG - chr2_4:7705671-7705690 None:intergenic 25.0%
!! ATTCAATATATGTTGATTGG+TGG + chr2_4:7705742-7705761 Msa0312530:intron 25.0%
! GCATTAATTTCAAGGATTTA+TGG + chr2_4:7705847-7705866 Msa0312530:CDS 25.0%
! CAGACTTCATAATACAATTA+AGG - chr2_4:7706110-7706129 None:intergenic 25.0%
!! TTTTTATAGATTGCACACAA+TGG + chr2_4:7706172-7706191 Msa0312530:intron 25.0%
! TGAAGATTATACATATATGG+CGG - chr2_4:7706293-7706312 None:intergenic 25.0%
!!! ATATTATTTTGAAGGTAAGG+AGG - chr2_4:7706353-7706372 None:intergenic 25.0%
!!! TGCATATTATTTTGAAGGTA+AGG - chr2_4:7706356-7706375 None:intergenic 25.0%
! ACCTTCAAAATAATATGCAT+TGG + chr2_4:7706357-7706376 Msa0312530:CDS 25.0%
!!! ACCAATGCATATTATTTTGA+AGG - chr2_4:7706361-7706380 None:intergenic 25.0%
! AAAAAGAGAAATCTCATCAT+AGG + chr2_4:7706420-7706439 Msa0312530:CDS 25.0%
! ATAAGAGGAAAAAAAACAGA+AGG + chr2_4:7706552-7706571 Msa0312530:CDS 25.0%
! TTTAACAGGAAGATGAAATT+AGG + chr2_4:7707961-7707980 Msa0312530:intron 25.0%
! AGGAATTTAGAAAAACTTGT+CGG + chr2_4:7708163-7708182 Msa0312530:exon 25.0%
! TCATAAAAACAAAGCAACAA+AGG - chr2_4:7708460-7708479 None:intergenic 25.0%
AAACAGAGCATAATCAAGAA+TGG - chr2_4:7703878-7703897 None:intergenic 30.0%
! ATTTTGCAGATTTGAGCTTT+TGG + chr2_4:7704033-7704052 Msa0312530:intron 30.0%
!!! TTTGAGCTTTTGGTGTTTAA+TGG + chr2_4:7704043-7704062 Msa0312530:CDS 30.0%
GTTAAAGATGAGATCTCTAA+AGG + chr2_4:7704127-7704146 Msa0312530:CDS 30.0%
TAGACTGACATATCATGATT+AGG - chr2_4:7704725-7704744 None:intergenic 30.0%
CTAATGAACTAGTCAAACAA+AGG - chr2_4:7705025-7705044 None:intergenic 30.0%
! CTTTGTTTGACTAGTTCATT+AGG + chr2_4:7705023-7705042 Msa0312530:intron 30.0%
ATTCAATTGCTGCAATGTTA+AGG + chr2_4:7705061-7705080 Msa0312530:intron 30.0%
ACAACCTACAAGTTCTTATA+TGG + chr2_4:7705253-7705272 Msa0312530:intron 30.0%
GTATCCATATAAGAACTTGT+AGG - chr2_4:7705260-7705279 None:intergenic 30.0%
AGAGAACTAACATCAAAAGT+TGG - chr2_4:7705527-7705546 None:intergenic 30.0%
TTAGTTTCAAACTCTACTGA+AGG - chr2_4:7705790-7705809 None:intergenic 30.0%
TCTTGGTATTCAATGTATGT+AGG + chr2_4:7705817-7705836 Msa0312530:intron 30.0%
CTTGGTATTCAATGTATGTA+GGG + chr2_4:7705818-7705837 Msa0312530:intron 30.0%
!! AGCTATTATTCTTGTTGTTC+TGG - chr2_4:7705998-7706017 None:intergenic 30.0%
AGACTCAAACAATTCTTTGA+AGG + chr2_4:7706526-7706545 Msa0312530:CDS 30.0%
! ATTCTTTGAAGGATGATAAG+AGG + chr2_4:7706537-7706556 Msa0312530:CDS 30.0%
AAAAACAGAAGGAAATCATC+TGG + chr2_4:7706563-7706582 Msa0312530:CDS 30.0%
! TCATTTCCATTTCTCCTTTT+TGG - chr2_4:7706623-7706642 None:intergenic 30.0%
ACTTCATTGAAATCCATGTT+TGG - chr2_4:7707004-7707023 None:intergenic 30.0%
! GGATCATCAAGTTCAATTTT+TGG - chr2_4:7707193-7707212 None:intergenic 30.0%
TCAGCAGCATAAGTATTTAA+CGG - chr2_4:7707214-7707233 None:intergenic 30.0%
AAATACTATAGGCACATTTG+GGG - chr2_4:7707317-7707336 None:intergenic 30.0%
CAAATACTATAGGCACATTT+GGG - chr2_4:7707318-7707337 None:intergenic 30.0%
TCAAATACTATAGGCACATT+TGG - chr2_4:7707319-7707338 None:intergenic 30.0%
AATGTGCCTATAGTATTTGA+TGG + chr2_4:7707319-7707338 Msa0312530:CDS 30.0%
CTATCACCATCAAATACTAT+AGG - chr2_4:7707328-7707347 None:intergenic 30.0%
ATGAAGGAATCATCAATGAT+AGG - chr2_4:7707388-7707407 None:intergenic 30.0%
ATAATCTTTCTGATTCCCAA+TGG + chr2_4:7707431-7707450 Msa0312530:CDS 30.0%
ACTTATATCTGTCTTCCATT+GGG - chr2_4:7707449-7707468 None:intergenic 30.0%
TACTTATATCTGTCTTCCAT+TGG - chr2_4:7707450-7707469 None:intergenic 30.0%
ATGGAAGACAGATATAAGTA+TGG + chr2_4:7707450-7707469 Msa0312530:CDS 30.0%
! TGCATTCTTTTCTTTTGTGT+CGG - chr2_4:7707509-7707528 None:intergenic 30.0%
GAATGCATTATCAAAGATAG+AGG + chr2_4:7707522-7707541 Msa0312530:CDS 30.0%
AAAGTCAATTTCATAGTCCA+TGG - chr2_4:7707614-7707633 None:intergenic 30.0%
!! ATTTATGTGTGCTGTTTAAC+AGG + chr2_4:7707947-7707966 Msa0312530:intron 30.0%
AGATGAAATTAGGAAGCAAT+TGG + chr2_4:7707971-7707990 Msa0312530:CDS 30.0%
!! TTTGCTATTTGATCTTTACC+AGG - chr2_4:7708068-7708087 None:intergenic 30.0%
AAACAGAAACAGTTCTGTTA+AGG + chr2_4:7708136-7708155 Msa0312530:CDS 30.0%
! ATGCAGCTTTTATAAGGTAT+AGG + chr2_4:7708217-7708236 Msa0312530:three_prime_UTR 30.0%
AAGAAAGAAACAAAGACAGC+AGG - chr2_4:7703733-7703752 None:intergenic 35.0%
AGATTGATGAAGAACAACGT+TGG - chr2_4:7703835-7703854 None:intergenic 35.0%
AGCATAATCAAGAATGGTCT+TGG - chr2_4:7703872-7703891 None:intergenic 35.0%
GAAAGAAACCTTGTTCTAGT+TGG - chr2_4:7703910-7703929 None:intergenic 35.0%
TTCGTGAGAAAATAGCTTCT+GGG + chr2_4:7704071-7704090 Msa0312530:CDS 35.0%
! AAAGATGAGATCTCTAAAGG+TGG + chr2_4:7704130-7704149 Msa0312530:CDS 35.0%
CTAAAGGTGGATACTCTATT+AGG + chr2_4:7704143-7704162 Msa0312530:CDS 35.0%
TGAAAATAACCTCTCAAAGG+TGG - chr2_4:7704209-7704228 None:intergenic 35.0%
!! TCTGCTGGATTTCTTTTTCA+AGG - chr2_4:7704485-7704504 None:intergenic 35.0%
! CAAATTGACTTTCAATCTGC+TGG - chr2_4:7704500-7704519 None:intergenic 35.0%
GACATATCATGATTAGGTGA+CGG - chr2_4:7704719-7704738 None:intergenic 35.0%
CAGTTAAATGATGCACTTGA+AGG + chr2_4:7704921-7704940 Msa0312530:intron 35.0%
TTGCAGCAATTGAATGTGTT+AGG - chr2_4:7705056-7705075 None:intergenic 35.0%
! ATCACGTTTAAGGTATGAAC+TGG + chr2_4:7705224-7705243 Msa0312530:intron 35.0%
!! AAAAAGTGCTCTCTAGAAAC+TGG - chr2_4:7705396-7705415 None:intergenic 35.0%
ATGTCTGAAAAGAAAGGGAA+AGG - chr2_4:7705430-7705449 None:intergenic 35.0%
TTTCACTTATCTAAGGGGAT+TGG + chr2_4:7705493-7705512 Msa0312530:intron 35.0%
TGCTAAAAATTCGCACGAAA+AGG - chr2_4:7705581-7705600 None:intergenic 35.0%
ATGTGTGTGCCTATTAGATT+AGG + chr2_4:7705659-7705678 Msa0312530:intron 35.0%
TGTGTGTGCCTATTAGATTA+GGG + chr2_4:7705660-7705679 Msa0312530:intron 35.0%
GGAAGCTTGCATTAATTTCA+AGG + chr2_4:7705839-7705858 Msa0312530:CDS 35.0%
! AAAAGCATGCAGATGATCTT+TGG + chr2_4:7705874-7705893 Msa0312530:CDS 35.0%
AAAGCATGCAGATGATCTTT+GGG + chr2_4:7705875-7705894 Msa0312530:CDS 35.0%
TGGATCATCAGGAATTATAC+TGG + chr2_4:7705950-7705969 Msa0312530:CDS 35.0%
!! ATTCTTGTTGTTCTGGTCAT+GGG - chr2_4:7705991-7706010 None:intergenic 35.0%
!! TATTCTTGTTGTTCTGGTCA+TGG - chr2_4:7705992-7706011 None:intergenic 35.0%
!! TATGCATTGGTCTTCTAACA+TGG + chr2_4:7706370-7706389 Msa0312530:CDS 35.0%
!! ATGCATTGGTCTTCTAACAT+GGG + chr2_4:7706371-7706390 Msa0312530:CDS 35.0%
!!! TTCTCTTTTTTAGTTGCTCG+TGG - chr2_4:7706410-7706429 None:intergenic 35.0%
GAGAAATCTCATCATAGGAA+AGG + chr2_4:7706425-7706444 Msa0312530:CDS 35.0%
TCAACTACATCACTCCAAAA+AGG + chr2_4:7706606-7706625 Msa0312530:CDS 35.0%
ATCACTCCAAAAAGGAGAAA+TGG + chr2_4:7706614-7706633 Msa0312530:CDS 35.0%
TGAAGAAACCATCAAACAGA+AGG + chr2_4:7706691-7706710 Msa0312530:CDS 35.0%
TAAATCAAATGATGCTGCTG+AGG + chr2_4:7706796-7706815 Msa0312530:CDS 35.0%
TTTGTGTTGAGAAACTCTGA+AGG + chr2_4:7706950-7706969 Msa0312530:CDS 35.0%
TCCAAAGAATCGTGAAATTG+CGG + chr2_4:7707024-7707043 Msa0312530:CDS 35.0%
ATTGTGACTCAAAGAGATGA+AGG + chr2_4:7707058-7707077 Msa0312530:CDS 35.0%
AGAGATGAAGGAAATGAAAG+AGG + chr2_4:7707070-7707089 Msa0312530:CDS 35.0%
TTTCCCTGATCTTTGTAACT+GGG - chr2_4:7707129-7707148 None:intergenic 35.0%
! ACAAAGATCAGGGAAAGTAT+TGG + chr2_4:7707133-7707152 Msa0312530:CDS 35.0%
GATGATTCCTTCATGATTCA+AGG + chr2_4:7707394-7707413 Msa0312530:CDS 35.0%
AAACTGACCTTGAATCATGA+AGG - chr2_4:7707404-7707423 None:intergenic 35.0%
AGATCTAACATCTTCCAACA+AGG + chr2_4:7707477-7707496 Msa0312530:CDS 35.0%
AAAACCATACAGAGGTCATT+TGG - chr2_4:7707550-7707569 None:intergenic 35.0%
TCAATAGAAGCTCTTCTATC+AGG - chr2_4:7707649-7707668 None:intergenic 35.0%
!! GGCTTTCTGTTTCTAGAAAT+CGG - chr2_4:7707775-7707794 None:intergenic 35.0%
TTTGAACCATAGGCTTTCTT+GGG - chr2_4:7707804-7707823 None:intergenic 35.0%
! TTTTGAACCATAGGCTTTCT+TGG - chr2_4:7707805-7707824 None:intergenic 35.0%
TATGGTTCAAAAGAGCCAAA+GGG + chr2_4:7707813-7707832 Msa0312530:CDS 35.0%
! TTCACAATACCTTTTCCCTT+TGG - chr2_4:7707831-7707850 None:intergenic 35.0%
TAGGAAGCAATTGGAAGAAA+AGG + chr2_4:7707980-7707999 Msa0312530:CDS 35.0%
TATTTGATCTTTACCAGGCA+CGG - chr2_4:7708063-7708082 None:intergenic 35.0%
! TAGTGTCATTCAGTTCAATG+TGG + chr2_4:7708189-7708208 Msa0312530:three_prime_UTR 35.0%
! GATGCAATGCAGCTTTTATA+AGG + chr2_4:7708211-7708230 Msa0312530:three_prime_UTR 35.0%
! CTTTTATAAGGTATAGGCCA+TGG + chr2_4:7708223-7708242 Msa0312530:three_prime_UTR 35.0%
TTTACCTTGTAGATTCACCA+TGG - chr2_4:7708243-7708262 None:intergenic 35.0%
GGAATATGAAGAATCGCACA+TGG - chr2_4:7703712-7703731 None:intergenic 40.0%
TGAGTGATGTGTAGTGATAG+TGG - chr2_4:7703783-7703802 None:intergenic 40.0%
CTTCATCAATCTTCTACCCA+TGG + chr2_4:7703843-7703862 Msa0312530:exon 40.0%
! AGAATGGTCTTGGAATCCAT+GGG - chr2_4:7703862-7703881 None:intergenic 40.0%
! AAGAATGGTCTTGGAATCCA+TGG - chr2_4:7703863-7703882 None:intergenic 40.0%
AACTCACACCAACTAGAACA+AGG + chr2_4:7703899-7703918 Msa0312530:CDS 40.0%
GTTCGTGAGAAAATAGCTTC+TGG + chr2_4:7704070-7704089 Msa0312530:CDS 40.0%
! TAACCTCTCAAAGGTGGATT+TGG - chr2_4:7704203-7704222 None:intergenic 40.0%
TTCCAAACCATACCTTCATC+CGG - chr2_4:7704555-7704574 None:intergenic 40.0%
GCAAGTTTCCTGATACACAA+TGG - chr2_4:7704775-7704794 None:intergenic 40.0%
GAGGTTAAGTGATTCTGCAA+AGG + chr2_4:7704817-7704836 Msa0312530:CDS 40.0%
AGGAGTTGACACTAAAGAAG+AGG + chr2_4:7704941-7704960 Msa0312530:CDS 40.0%
!! TATACACGTAGTCTTGTTGC+TGG + chr2_4:7705147-7705166 Msa0312530:CDS 40.0%
! CATTTGGAGCATCACGTTTA+AGG + chr2_4:7705214-7705233 Msa0312530:CDS 40.0%
GCCTCAGTTCTTCCTAAATA+TGG + chr2_4:7705296-7705315 Msa0312530:intron 40.0%
GCCATATTTAGGAAGAACTG+AGG - chr2_4:7705300-7705319 None:intergenic 40.0%
TCTCATTCCTTGCGAATCTA+AGG + chr2_4:7705544-7705563 Msa0312530:intron 40.0%
CAGTTATCCTTAGATTCGCA+AGG - chr2_4:7705554-7705573 None:intergenic 40.0%
CATTAAAATGCACTGTGTGC+AGG - chr2_4:7705626-7705645 None:intergenic 40.0%
ACTCTACTGAAGGTTTCATC+TGG - chr2_4:7705780-7705799 None:intergenic 40.0%
! CTCTCATTTTCTGGATCATC+AGG + chr2_4:7705939-7705958 Msa0312530:CDS 40.0%
TCTACAGACAGTATTCCTTC+TGG + chr2_4:7706017-7706036 Msa0312530:CDS 40.0%
AGATGTGAACTTATCGCACA+TGG + chr2_4:7706223-7706242 Msa0312530:intron 40.0%
ATATGCCAATGCATATGCCA+TGG + chr2_4:7706255-7706274 Msa0312530:CDS 40.0%
ATATATGGCGGTACGTTGTA+AGG - chr2_4:7706281-7706300 None:intergenic 40.0%
!! TATGAAGGCATTTGCTGACT+AGG - chr2_4:7706320-7706339 None:intergenic 40.0%
ATTCCAGTGATCCTGATTCA+GGG + chr2_4:7706477-7706496 Msa0312530:CDS 40.0%
AGGAGAAATGGAAATGAGAG+TGG + chr2_4:7706626-7706645 Msa0312530:CDS 40.0%
GAAACCATCAAACAGAAGGT+TGG + chr2_4:7706695-7706714 Msa0312530:CDS 40.0%
ATCACCAACCTTCTGTTTGA+TGG - chr2_4:7706702-7706721 None:intergenic 40.0%
TGCACTTGAATCATTGCAGA+AGG + chr2_4:7706721-7706740 Msa0312530:CDS 40.0%
TCATTGCAGAAGGTCCATAA+AGG + chr2_4:7706731-7706750 Msa0312530:CDS 40.0%
GTCCATAAAGGTGAAAAACG+TGG + chr2_4:7706743-7706762 Msa0312530:CDS 40.0%
! TGCCACGTTTTTCACCTTTA+TGG - chr2_4:7706748-7706767 None:intergenic 40.0%
GAGGGAACAAAAATGAGAAC+TGG + chr2_4:7706834-7706853 Msa0312530:CDS 40.0%
CATCTATCTTCAAAAGGCTC+TGG - chr2_4:7706868-7706887 None:intergenic 40.0%
!! GAGCCTTTTGAAGATAGATG+CGG + chr2_4:7706868-7706887 Msa0312530:CDS 40.0%
GATGCAATCGATTGATGTTC+AGG + chr2_4:7706919-7706938 Msa0312530:CDS 40.0%
TCCGCAATTTCACGATTCTT+TGG - chr2_4:7707028-7707047 None:intergenic 40.0%
AAATGAAAGAGGATCGAAGC+TGG + chr2_4:7707081-7707100 Msa0312530:CDS 40.0%
TGTCCCAGTTACAAAGATCA+GGG + chr2_4:7707123-7707142 Msa0312530:CDS 40.0%
CTTTCCCTGATCTTTGTAAC+TGG - chr2_4:7707130-7707149 None:intergenic 40.0%
!! CTGTTTCTAGAAATCGGTTC+AGG - chr2_4:7707769-7707788 None:intergenic 40.0%
!!! CTTTGGCTCTTTTGAACCAT+AGG - chr2_4:7707814-7707833 None:intergenic 40.0%
CTATGGTTCAAAAGAGCCAA+AGG + chr2_4:7707812-7707831 Msa0312530:CDS 40.0%
TCAAAAGAGCCAAAGGGAAA+AGG + chr2_4:7707819-7707838 Msa0312530:CDS 40.0%
ACTGAAAGAACTGCATCTTC+AGG + chr2_4:7708026-7708045 Msa0312530:CDS 40.0%
AACAGTTCTGTTAAGGTCAG+AGG + chr2_4:7708143-7708162 Msa0312530:CDS 40.0%
! AACCAGAAAGCAGTGTTGGA+TGG - chr2_4:7704178-7704197 None:intergenic 45.0%
TCTCCAAATCCACCTTTGAG+AGG + chr2_4:7704197-7704216 Msa0312530:CDS 45.0%
TCCAAACCATACCTTCATCC+GGG - chr2_4:7704554-7704573 None:intergenic 45.0%
CTTGCGTTTCCATTTGTGTG+CGG - chr2_4:7704797-7704816 None:intergenic 45.0%
ACACAAATGGAAACGCAAGG+AGG + chr2_4:7704798-7704817 Msa0312530:CDS 45.0%
! GTGCTATTCGAGACTCCAAA+AGG - chr2_4:7705101-7705120 None:intergenic 45.0%
AGCACTACTTCGAAAAGAGC+AGG + chr2_4:7705116-7705135 Msa0312530:CDS 45.0%
ACTTCGAAAAGAGCAGGCAA+TGG + chr2_4:7705122-7705141 Msa0312530:CDS 45.0%
CACTTATCTAAGGGGATTGG+AGG + chr2_4:7705496-7705515 Msa0312530:intron 45.0%
CTGAAGGTTTCATCTGGTAG+AGG - chr2_4:7705774-7705793 None:intergenic 45.0%
! GATCCAGAAAATGAGAGTGC+TGG - chr2_4:7705936-7705955 None:intergenic 45.0%
! AATGCATTTTCGTCGCCAGA+AGG - chr2_4:7706035-7706054 None:intergenic 45.0%
TAAGGCCATGGCATATGCAT+TGG - chr2_4:7706263-7706282 None:intergenic 45.0%
CAGCAAATGCCTTCATACCA+AGG + chr2_4:7706323-7706342 Msa0312530:CDS 45.0%
GGAGGATATCCTTGGTATGA+AGG - chr2_4:7706335-7706354 None:intergenic 45.0%
GAAGGTAAGGAGGATATCCT+TGG - chr2_4:7706343-7706362 None:intergenic 45.0%
GATTCCAGTGATCCTGATTC+AGG + chr2_4:7706476-7706495 Msa0312530:CDS 45.0%
TCAGATTCACTCCCTGAATC+AGG - chr2_4:7706491-7706510 None:intergenic 45.0%
AGGAAGATGCATCTGATGGA+GGG + chr2_4:7706816-7706835 Msa0312530:CDS 45.0%
!! CCTTTTGAAGATAGATGCGG+CGG + chr2_4:7706871-7706890 Msa0312530:CDS 45.0%
!! TGCTAGTTCTGCTCCAAACA+TGG + chr2_4:7706988-7707007 Msa0312530:CDS 45.0%
GTGTCCCAGTTACAAAGATC+AGG + chr2_4:7707122-7707141 Msa0312530:CDS 45.0%
!! TGCTGATTCATCACAACCCA+AGG + chr2_4:7707228-7707247 Msa0312530:CDS 45.0%
! GCTGATTCATCACAACCCAA+GGG + chr2_4:7707229-7707248 Msa0312530:CDS 45.0%
TCTTCTGATCCTCTTCCCTT+GGG - chr2_4:7707247-7707266 None:intergenic 45.0%
ATCTTCTGATCCTCTTCCCT+TGG - chr2_4:7707248-7707267 None:intergenic 45.0%
AGGGAAGAGGATCAGAAGAT+TGG + chr2_4:7707248-7707267 Msa0312530:CDS 45.0%
TAGGCACATTTGGGGAATCA+TGG - chr2_4:7707309-7707328 None:intergenic 45.0%
!! TGTGTCGGTTTCTACCTTGT+TGG - chr2_4:7707494-7707513 None:intergenic 45.0%
!! ATGGTTTTGCAACGCGATTC+AGG + chr2_4:7707562-7707581 Msa0312530:CDS 45.0%
TTTGCAACGCGATTCAGGAT+TGG + chr2_4:7707567-7707586 Msa0312530:CDS 45.0%
TGGATTCTGTTGAAGCCTCA+AGG + chr2_4:7707587-7707606 Msa0312530:CDS 45.0%
TTCATAGTCCATGGTCCTTG+AGG - chr2_4:7707605-7707624 None:intergenic 45.0%
!!! TTGATCGCGCTGGTTTTCTT+TGG - chr2_4:7707715-7707734 None:intergenic 45.0%
ATAGGCTTTCTTGGGAGAGA+TGG - chr2_4:7707796-7707815 None:intergenic 45.0%
ATCTCTCCCAAGAAAGCCTA+TGG + chr2_4:7707795-7707814 Msa0312530:CDS 45.0%
GCAATTGGAAGAAAAGGCGA+TGG + chr2_4:7707986-7708005 Msa0312530:CDS 45.0%
AGAACTGCATCTTCAGGTGT+TGG + chr2_4:7708032-7708051 Msa0312530:CDS 45.0%
TAGGCCATGGTGAATCTACA+AGG + chr2_4:7708236-7708255 Msa0312530:three_prime_UTR 45.0%
TCGCACATGGAGTGTGAACT+GGG - chr2_4:7703699-7703718 None:intergenic 50.0%
ATCGCACATGGAGTGTGAAC+TGG - chr2_4:7703700-7703719 None:intergenic 50.0%
! CAGAAAGCAGTGTTGGATGG+AGG - chr2_4:7704175-7704194 None:intergenic 50.0%
CTCCATCCAACACTGCTTTC+TGG + chr2_4:7704173-7704192 Msa0312530:CDS 50.0%
GGAGAACCAGAAAGCAGTGT+TGG - chr2_4:7704182-7704201 None:intergenic 50.0%
TGTTAGCACACCTGCAGTAC+TGG + chr2_4:7704446-7704465 Msa0312530:CDS 50.0%
ACAAACCTCTCCAGTACTGC+AGG - chr2_4:7704459-7704478 None:intergenic 50.0%
GTCGATGTCAGTTGCAATCC+CGG + chr2_4:7704533-7704552 Msa0312530:CDS 50.0%
TCAGTTGCAATCCCGGATGA+AGG + chr2_4:7704540-7704559 Msa0312530:CDS 50.0%
TGCAATCCCGGATGAAGGTA+TGG + chr2_4:7704545-7704564 Msa0312530:intron 50.0%
! TCCCGGATGAAGGTATGGTT+TGG + chr2_4:7704550-7704569 Msa0312530:intron 50.0%
GGAAACTTGCCGCACACAAA+TGG + chr2_4:7704785-7704804 Msa0312530:intron 50.0%
CGCACACAAATGGAAACGCA+AGG + chr2_4:7704795-7704814 Msa0312530:CDS 50.0%
! GATTTCGCTGCAACGCCTTT+TGG + chr2_4:7705083-7705102 Msa0312530:CDS 50.0%
!! CCAGAAAATGAGAGTGCTGG+TGG - chr2_4:7705933-7705952 None:intergenic 50.0%
! CCACCAGCACTCTCATTTTC+TGG + chr2_4:7705930-7705949 Msa0312530:CDS 50.0%
!! CTTGTTGTTCTGGTCATGGG+CGG - chr2_4:7705988-7706007 None:intergenic 50.0%
ACTCCCTGAATCAGGATCAC+TGG - chr2_4:7706483-7706502 None:intergenic 50.0%
GCTGAGGAAGATGCATCTGA+TGG + chr2_4:7706812-7706831 Msa0312530:CDS 50.0%
GAGGAAGATGCATCTGATGG+AGG + chr2_4:7706815-7706834 Msa0312530:CDS 50.0%
CCGCCGCATCTATCTTCAAA+AGG - chr2_4:7706874-7706893 None:intergenic 50.0%
TCATCACAACCCAAGGGAAG+AGG + chr2_4:7707235-7707254 Msa0312530:CDS 50.0%
GGAGCCAAATGACCTCTGTA+TGG + chr2_4:7707543-7707562 Msa0312530:CDS 50.0%
CGCGTTGCAAAACCATACAG+AGG - chr2_4:7707558-7707577 None:intergenic 50.0%
TGTTGAAGCCTCAAGGACCA+TGG + chr2_4:7707594-7707613 Msa0312530:CDS 50.0%
!! GACTTTGCTTTTGATCGCGC+TGG - chr2_4:7707725-7707744 None:intergenic 50.0%
AAAAGGCGATGGAACGACAG+AGG + chr2_4:7707997-7708016 Msa0312530:CDS 50.0%
AAGATAGATGCGGCGGAGAC+TGG + chr2_4:7706878-7706897 Msa0312530:CDS 55.0%
! GCACACCTGCAGTACTGGAG+AGG + chr2_4:7704451-7704470 Msa0312530:CDS 60.0%
GGCGGTACGTTGTAAGGCCA+TGG - chr2_4:7706275-7706294 None:intergenic 60.0%
GCGGCGGAGACTGGAATTGA+TGG + chr2_4:7706887-7706906 Msa0312530:CDS 60.0%
!! GGTGTTGGTCGAACCGTGCC+TGG + chr2_4:7708047-7708066 Msa0312530:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 7703686 7708514 7703686 ID=Msa0312530;Name=Msa0312530
chr2_4 mRNA 7703686 7708514 7703686 ID=Msa0312530-mRNA-1;Parent=Msa0312530;Name=Msa0312530-mRNA-1;_AED=0.04;_eAED=0.04;_QI=176|1|1|1|1|1|9|342|891
chr2_4 exon 7703686 7703920 7703686 ID=Msa0312530-mRNA-1:exon:2952;Parent=Msa0312530-mRNA-1
chr2_4 exon 7704042 7704218 7704042 ID=Msa0312530-mRNA-1:exon:2953;Parent=Msa0312530-mRNA-1
chr2_4 exon 7704434 7704561 7704434 ID=Msa0312530-mRNA-1:exon:2954;Parent=Msa0312530-mRNA-1
chr2_4 exon 7704786 7704838 7704786 ID=Msa0312530-mRNA-1:exon:2955;Parent=Msa0312530-mRNA-1
chr2_4 exon 7704924 7704973 7704924 ID=Msa0312530-mRNA-1:exon:2956;Parent=Msa0312530-mRNA-1
chr2_4 exon 7705083 7705235 7705083 ID=Msa0312530-mRNA-1:exon:2957;Parent=Msa0312530-mRNA-1
chr2_4 exon 7705839 7706074 7705839 ID=Msa0312530-mRNA-1:exon:2958;Parent=Msa0312530-mRNA-1
chr2_4 exon 7706225 7707840 7706225 ID=Msa0312530-mRNA-1:exon:2959;Parent=Msa0312530-mRNA-1
chr2_4 exon 7707969 7708514 7707969 ID=Msa0312530-mRNA-1:exon:2960;Parent=Msa0312530-mRNA-1
chr2_4 five_prime_UTR 7703686 7703861 7703686 ID=Msa0312530-mRNA-1:five_prime_utr;Parent=Msa0312530-mRNA-1
chr2_4 CDS 7703862 7703920 7703862 ID=Msa0312530-mRNA-1:cds;Parent=Msa0312530-mRNA-1
chr2_4 CDS 7704042 7704218 7704042 ID=Msa0312530-mRNA-1:cds;Parent=Msa0312530-mRNA-1
chr2_4 CDS 7704434 7704561 7704434 ID=Msa0312530-mRNA-1:cds;Parent=Msa0312530-mRNA-1
chr2_4 CDS 7704786 7704838 7704786 ID=Msa0312530-mRNA-1:cds;Parent=Msa0312530-mRNA-1
chr2_4 CDS 7704924 7704973 7704924 ID=Msa0312530-mRNA-1:cds;Parent=Msa0312530-mRNA-1
chr2_4 CDS 7705083 7705235 7705083 ID=Msa0312530-mRNA-1:cds;Parent=Msa0312530-mRNA-1
chr2_4 CDS 7705839 7706074 7705839 ID=Msa0312530-mRNA-1:cds;Parent=Msa0312530-mRNA-1
chr2_4 CDS 7706225 7707840 7706225 ID=Msa0312530-mRNA-1:cds;Parent=Msa0312530-mRNA-1
chr2_4 CDS 7707969 7708172 7707969 ID=Msa0312530-mRNA-1:cds;Parent=Msa0312530-mRNA-1
chr2_4 three_prime_UTR 7708173 7708514 7708173 ID=Msa0312530-mRNA-1:three_prime_utr;Parent=Msa0312530-mRNA-1
Gene Sequence

>Msa0312530

ATGGATTCCAAGACCATTCTTGATTATGCTCTGTTTCAACTCACACCAACTAGAACAAGATTTGAGCTTTTGGTGTTTAATGGAGCTGTTCGTGAGAAAATAGCTTCTGGGTTATTTGAACCTTTCATTTCTCATCTCAAATTTGTTAAAGATGAGATCTCTAAAGGTGGATACTCTATTAGGCTATTGCCTCCATCCAACACTGCTTTCTGGTTCTCCAAATCCACCTTTGAGAGATTTGTGCGGTTTGTTAGCACACCTGCAGTACTGGAGAGGTTTGTTAGCCTTGAAAAAGAAATCCAGCAGATTGAAAGTCAATTTGAAGCGAATGCGTTGTCGATGTCAGTTGCAATCCCGGATGAAGGAAACTTGCCGCACACAAATGGAAACGCAAGGAGGTTAAGTGATTCTGCAAAGTTAAATGATGCACTTGAAGGAGTTGACACTAAAGAAGAGGAAAACTCAAAGATTTCGCTGCAACGCCTTTTGGAGTCTCGAATAGCACTACTTCGAAAAGAGCAGGCAATGGCATATACACGTAGTCTTGTTGCTGGATTTGATATTGACAACATTGATGATCTTGTATATTTTGCAAATGCATTTGGAGCATCACGTTTAAGGGAAGCTTGCATTAATTTCAAGGATTTATGGAAGAAAAAGCATGCAGATGATCTTTGGGTTCAAGAAGTAGCTGCAATGCAATCAAACTTACCACCAGCACTCTCATTTTCTGGATCATCAGGAATTATACTGGCGAATGACATAGCCGCCCATGACCAGAACAACAAGAATAATAGCTCTACAGACAGTATTCCTTCTGGCGACGAAAATGCATTTGTAGAAAACAAAAAAGACGATGTGAACTTATCGCACATGGCGAATGTTCATATGCCAATGCATATGCCATGGCCTTACAACGTACCGCCATATATGTATAATCTTCAAAATCCTAGTCAGCAAATGCCTTCATACCAAGGATATCCTCCTTACCTTCAAAATAATATGCATTGGTCTTCTAACATGGGAGTGAATCAAAAACCACGAGCAACTAAAAAAGAGAAATCTCATCATAGGAAAGGATCAGAAGAATATGAAGAGCAGCAAACAGATTCCAGTGATCCTGATTCAGGGAGTGAATCTGATTCAGATAAACAGAAAGACTCAAACAATTCTTTGAAGGATGATAAGAGGAAAAAAAACAGAAGGAAATCATCTGGAACAGTTGTGATACGTAATATCAACTACATCACTCCAAAAAGGAGAAATGGAAATGAGAGTGGAGTATCTGATGAATCTTCTTTAGAAGACGATGCTATCTTCGATGAAGAAACCATCAAACAGAAGGTTGGTGATGCACTTGAATCATTGCAGAAGGTCCATAAAGGTGAAAAACGTGGCAATCGAAAAAAGTCAGTGACCAAACACAATAAATCAAATGATGCTGCTGAGGAAGATGCATCTGATGGAGGGAACAAAAATGAGAACTGGAATGCATTCCAGAGCCTTTTGAAGATAGATGCGGCGGAGACTGGAATTGATGGATCAGAACAGATGCAATCGATTGATGTTCAGGATGAACATTTTGTGTTGAGAAACTCTGAAGGAACAATGTCATACGCTGCTAGTTCTGCTCCAAACATGGATTTCAATGAAGTTCCAAAGAATCGTGAAATTGCGGATGACTCATTTATTGTGACTCAAAGAGATGAAGGAAATGAAAGAGGATCGAAGCTGGATGAATATGTAGACAACTGTGTCCCAGTTACAAAGATCAGGGAAAGTATTGGTGAAGATATGATGTTAGCAAACACATCAAGAGAACCAAAAATTGAACTTGATGATCCGTTAAATACTTATGCTGCTGATTCATCACAACCCAAGGGAAGAGGATCAGAAGATTGGTTTATTGTTGATAACAATTTGGAAAGTATGAGAAGCCATGATTCCCCAAATGTGCCTATAGTATTTGATGGTGATAGAACTTTATCATCAGTGAGTGAAAAAAGAAGTGATAGACCTATCATTGATGATTCCTTCATGATTCAAGGTCAGTTTGTAGACAATAATCTTTCTGATTCCCAATGGAAGACAGATATAAGTATGGTTGAAGATCTAACATCTTCCAACAAGGTAGAAACCGACACAAAAGAAAAGAATGCATTATCAAAGATAGAGGAGCCAAATGACCTCTGTATGGTTTTGCAACGCGATTCAGGATTGGATTCTGTTGAAGCCTCAAGGACCATGGACTATGAAATTGACTTTTCTTACACAGAACCTGATAGAAGAGCTTCTATTGATGATTCACATGTTAATGTCAATAACAACAATCTTTCTGATAGTCCAAAGAAAACCAGCGCGATCAAAAGCAAAGTCTCACGTTTGTCAAAGAGCACGCCTGAACCGATTTCTAGAAACAGAAAGCCATCTCTCCCAAGAAAGCCTATGGTTCAAAAGAGCCAAAGGGAAAAGGAAGATGAAATTAGGAAGCAATTGGAAGAAAAGGCGATGGAACGACAGAGGAGAATCACTGAAAGAACTGCATCTTCAGGTGTTGGTCGAACCGTGCCTGGTAAAGATCAAATAGCAAAGATTTCTTCAAAAACTGACAAGAATAAGACTCAAACTATTAAAGAGACAAACAGAAACAGTTCTGTTAAGGTCAGAGGAATTTAG
Protein sequence

>Msa0312530

MDSKTILDYALFQLTPTRTRFELLVFNGAVREKIASGLFEPFISHLKFVKDEISKGGYSIRLLPPSNTAFWFSKSTFERFVRFVSTPAVLERFVSLEKEIQQIESQFEANALSMSVAIPDEGNLPHTNGNARRLSDSAKLNDALEGVDTKEEENSKISLQRLLESRIALLRKEQAMAYTRSLVAGFDIDNIDDLVYFANAFGASRLREACINFKDLWKKKHADDLWVQEVAAMQSNLPPALSFSGSSGIILANDIAAHDQNNKNNSSTDSIPSGDENAFVENKKDDVNLSHMANVHMPMHMPWPYNVPPYMYNLQNPSQQMPSYQGYPPYLQNNMHWSSNMGVNQKPRATKKEKSHHRKGSEEYEEQQTDSSDPDSGSESDSDKQKDSNNSLKDDKRKKNRRKSSGTVVIRNINYITPKRRNGNESGVSDESSLEDDAIFDEETIKQKVGDALESLQKVHKGEKRGNRKKSVTKHNKSNDAAEEDASDGGNKNENWNAFQSLLKIDAAETGIDGSEQMQSIDVQDEHFVLRNSEGTMSYAASSAPNMDFNEVPKNREIADDSFIVTQRDEGNERGSKLDEYVDNCVPVTKIRESIGEDMMLANTSREPKIELDDPLNTYAADSSQPKGRGSEDWFIVDNNLESMRSHDSPNVPIVFDGDRTLSSVSEKRSDRPIIDDSFMIQGQFVDNNLSDSQWKTDISMVEDLTSSNKVETDTKEKNALSKIEEPNDLCMVLQRDSGLDSVEASRTMDYEIDFSYTEPDRRASIDDSHVNVNNNNLSDSPKKTSAIKSKVSRLSKSTPEPISRNRKPSLPRKPMVQKSQREKEDEIRKQLEEKAMERQRRITERTASSGVGRTVPGKDQIAKISSKTDKNKTQTIKETNRNSSVKVRGI*