AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1450060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1450060 MtrunA17_Chr3g0122881 94.340 371 20 1 3 373 2 371 0.0 689
Msa1450060 MtrunA17_Chr7g0222391 44.286 420 145 20 4 373 3 383 2.34e-82 256
Msa1450060 MtrunA17_Chr7g0224731 36.082 388 184 13 3 373 2 342 1.02e-51 175
Msa1450060 MtrunA17_Chr7g0224671 30.887 327 148 13 1 302 17 290 1.56e-24 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1450060 AT5G14090.1 34.367 387 208 14 3 373 2 358 1.78e-42 152
Msa1450060 AT5G14090.2 33.333 282 163 8 3 271 2 271 3.56e-28 112

Find 110 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAAATAAGATTCGGTTTA+TGG 0.065232 tig0032775:-19977 Msa1450060:three_prime_UTR
GAGATGCATGGCAGATTTAT+TGG 0.247230 tig0032775:+21253 Msa1450060:intergenic
TGCCACCGCCAAGGGTAATT+TGG 0.255351 tig0032775:+20548 Msa1450060:intergenic
CTTATTCTTTGACACTGATA+TGG 0.261165 tig0032775:+21394 Msa1450060:intergenic
CCACTTCAGGGATATCTCTT+TGG 0.265174 tig0032775:-21452 Msa1450060:CDS
CATATCAGTGTCAAAGAATA+AGG 0.288207 tig0032775:-21393 Msa1450060:CDS
AGGCAAAGGGCGAACGGAAT+TGG 0.300171 tig0032775:-20267 Msa1450060:three_prime_UTR
AAGACTATGCAATGCAATAA+TGG 0.301066 tig0032775:-20195 Msa1450060:three_prime_UTR
TGAAGATTCATCTGAGAATA+TGG 0.319257 tig0032775:-20524 Msa1450060:CDS
CTTAGTGTTGGAGCTCTAAA+AGG 0.331716 tig0032775:-20287 Msa1450060:exon
GTTAAGAGTCTGTCCGGATA+TGG 0.336650 tig0032775:-20081 Msa1450060:three_prime_UTR
TTCTCTCTGCGGTGCTTACA+TGG 0.339766 tig0032775:+21516 Msa1450060:intergenic
TGTCTTTAGTTAATTATTTG+AGG 0.346140 tig0032775:-20119 Msa1450060:three_prime_UTR
AGACAGAAAACTGCATAATA+AGG 0.354735 tig0032775:-21159 Msa1450060:intron
CTTAATTTGCAGCAGTTACT+TGG 0.355697 tig0032775:-22465 Msa1450060:intron
GGATGATACTGACAATAAAA+AGG 0.366676 tig0032775:-21282 Msa1450060:CDS
AAACTCCATTTGTCCACTTC+AGG 0.368249 tig0032775:-21465 Msa1450060:CDS
TTCCTAGCAATTGGAACTCT+TGG 0.378228 tig0032775:-21710 Msa1450060:CDS
AGCAATTGGAACTCTTGGTT+TGG 0.393170 tig0032775:-21705 Msa1450060:CDS
CACTATCTGAAACCGAACTT+TGG 0.396952 tig0032775:-21863 Msa1450060:CDS
GATCAGCTTCAGCTCATTCT+CGG 0.397412 tig0032775:+21604 None:intergenic
AATGCTGGTCCCAACACTAA+TGG 0.397418 tig0032775:-25616 None:intergenic
TTCCCCGGCTTCCTAGCAAT+TGG 0.406570 tig0032775:-21719 Msa1450060:CDS
GGCAAAGGGCGAACGGAATT+GGG 0.408082 tig0032775:-20266 Msa1450060:three_prime_UTR
GAGAAGCAAACAAGCAGATC+AGG 0.413070 tig0032775:-21324 Msa1450060:CDS
GAACTTTCCGGTGAAACATC+TGG 0.414604 tig0032775:+20731 Msa1450060:intergenic
AAGTTGAATCAACAGAGGTC+TGG 0.422480 tig0032775:+21186 Msa1450060:intergenic
GAAACAATTAAAATAAGATT+CGG 0.422974 tig0032775:-19984 Msa1450060:three_prime_UTR
TGGAACTCTTGGTTTGGAAT+CGG 0.430619 tig0032775:-21699 Msa1450060:CDS
ACTATCTGAAACCGAACTTT+GGG 0.435339 tig0032775:-21862 Msa1450060:CDS
AGACTATGCAATGCAATAAT+GGG 0.436065 tig0032775:-20194 Msa1450060:three_prime_UTR
TAATGTAATGTTCAAGAGTA+AGG 0.439574 tig0032775:-19937 Msa1450060:three_prime_UTR
ATGCTGGTCCCAACACTAAT+GGG 0.440075 tig0032775:-25615 None:intergenic
GCAGATCAGGACAATCTTGT+TGG 0.449301 tig0032775:-21311 Msa1450060:CDS
AACTCCATTTGTCCACTTCA+GGG 0.453747 tig0032775:-21464 Msa1450060:CDS
GAAGAAGAAAAGAATGAATG+AGG 0.455837 tig0032775:-20674 Msa1450060:CDS
GCTCACCCAGTGTTGTTCTC+TGG 0.456925 tig0032775:+21354 Msa1450060:intergenic
AATGATGGTGTTAGTGGTGA+TGG 0.457780 tig0032775:+21674 Msa1450060:intergenic
GTTCCAATTGCTAGGAAGCC+GGG 0.462497 tig0032775:+21716 Msa1450060:intergenic
AGAAAATCTTTCGAAGCAGT+TGG 0.467282 tig0032775:-21794 Msa1450060:CDS
TGAGAATATAATAACTGAAA+AGG 0.468108 tig0032775:-21639 Msa1450060:CDS
AACAACAATGATGATTCATC+TGG 0.470245 tig0032775:-21548 Msa1450060:CDS
GAAAATCTTTCGAAGCAGTT+GGG 0.473047 tig0032775:-21793 Msa1450060:CDS
AGATGAATCATCATTGTTGT+TGG 0.478539 tig0032775:+21550 Msa1450060:intergenic
ATGGAAAATGATGGTGTTAG+TGG 0.481586 tig0032775:+21668 Msa1450060:intergenic
AACTGACTCCCATTAGTGTT+GGG 0.488895 tig0032775:+25607 Msa1450060:intergenic
TAAGCAAGTGAATGTAAAGA+AGG 0.489282 tig0032775:-20006 Msa1450060:three_prime_UTR
ATATCCCTGAAGTGGACAAA+TGG 0.494244 tig0032775:+21460 Msa1450060:intergenic
AACTAAAGACACAAAACATA+AGG 0.499571 tig0032775:+20131 Msa1450060:intergenic
TCATATTAATTTGATGCTCG+TGG 0.500786 tig0032775:+20237 Msa1450060:intergenic
AGTTGAATCAACAGAGGTCT+GGG 0.504381 tig0032775:+21187 Msa1450060:intergenic
AAGAGTGTTAAGAGTCTGTC+CGG 0.508459 tig0032775:-20087 Msa1450060:three_prime_UTR
TTAAATTGCAGACTTAGTGT+TGG 0.509625 tig0032775:-20299 Msa1450060:intron
CATCCTTGTGAAACCATATC+CGG 0.509628 tig0032775:+20068 Msa1450060:intergenic
GGAAGAAGATAAGGAGGCAT+GGG 0.511093 tig0032775:-21750 Msa1450060:CDS
CTTTCAGTTCTATACACTGT+GGG 0.515729 tig0032775:-19876 Msa1450060:three_prime_UTR
ATTTGCAGCAGTTACTTGGA+TGG 0.516221 tig0032775:-22461 Msa1450060:intron
AAGAAGAAAAGAATGAATGA+GGG 0.517369 tig0032775:-20673 Msa1450060:CDS
AGTAGACGAGGAAGAAGATA+AGG 0.519096 tig0032775:-21759 Msa1450060:CDS
AGTTCCAATTGCTAGGAAGC+CGG 0.522924 tig0032775:+21715 Msa1450060:intergenic
CAAAAGTAATAAAGTTGAAG+AGG 0.525680 tig0032775:-20641 Msa1450060:CDS
AGAGGTCTGGGAAGAAGCAT+GGG 0.527489 tig0032775:+21199 Msa1450060:intergenic
CAGAGGTCTGGGAAGAAGCA+TGG 0.527966 tig0032775:+21198 Msa1450060:intergenic
CAACTCCAAATTACCCTTGG+CGG 0.530405 tig0032775:-20553 Msa1450060:CDS
CACTGAACCTTTCAAAGACC+TGG 0.535667 tig0032775:-22412 Msa1450060:CDS
ATCTTCACTGCCACCGCCAA+GGG 0.536347 tig0032775:+20540 Msa1450060:intergenic
TATGAAAGATATGATCGTCA+TGG 0.538059 tig0032775:-20219 Msa1450060:three_prime_UTR
TATTATATTCTCAACAGAGA+TGG 0.542260 tig0032775:+21649 Msa1450060:intergenic
GGACAATCTTGTTGGAGCAA+AGG 0.550435 tig0032775:-21303 Msa1450060:CDS
TCTTTCGAAGCAGTTGGGAG+TGG 0.552062 tig0032775:-21788 Msa1450060:CDS
AGATTCTCCAGATGTTTCAC+CGG 0.556872 tig0032775:-20738 Msa1450060:CDS
AATCTTCACTGCCACCGCCA+AGG 0.558247 tig0032775:+20539 Msa1450060:intergenic
CCTTTCAAAGACCTGGTCAC+TGG 0.558420 tig0032775:-22405 Msa1450060:intron
AAACTGACTCCCATTAGTGT+TGG 0.558780 tig0032775:+25606 Msa1450060:intergenic
TCGTACTTCTCTGCACATGT+TGG 0.562643 tig0032775:+20697 Msa1450060:intergenic
CCAGTGACCAGGTCTTTGAA+AGG 0.563072 tig0032775:+22405 Msa1450060:intergenic
ATGAAAGATATGATCGTCAT+GGG 0.567897 tig0032775:-20218 Msa1450060:three_prime_UTR
AGGAAGAAGATAAGGAGGCA+TGG 0.571385 tig0032775:-21751 Msa1450060:CDS
CTCCAAATTACCCTTGGCGG+TGG 0.573132 tig0032775:-20550 Msa1450060:CDS
CCAAAGAGATATCCCTGAAG+TGG 0.575875 tig0032775:+21452 Msa1450060:intergenic
GAAGATAAGGAGGCATGGGG+TGG 0.581558 tig0032775:-21746 Msa1450060:CDS
TCAACAGAGATGGAAAATGA+TGG 0.585903 tig0032775:+21659 Msa1450060:intergenic
AGGCAACTCCAAATTACCCT+TGG 0.588508 tig0032775:-20556 Msa1450060:CDS
TTGGAGCTCTAAAAGGCAAA+GGG 0.588657 tig0032775:-20280 Msa1450060:exon
ATAACACTATCAAAGAATGA+AGG 0.592308 tig0032775:-22579 Msa1450060:intron
TCTAAAAGGCAAAGGGCGAA+CGG 0.593553 tig0032775:-20273 Msa1450060:exon
GCAGTTGGAAAGGAAAACAT+AGG 0.595191 tig0032775:-20592 Msa1450060:CDS
CACAGCCAGAGAACAACACT+GGG 0.596125 tig0032775:-21359 Msa1450060:CDS
GTTGGAGCTCTAAAAGGCAA+AGG 0.599355 tig0032775:-20281 Msa1450060:exon
ACACAGCCAGAGAACAACAC+TGG 0.600693 tig0032775:-21360 Msa1450060:CDS
AGACGAGGAAGAAGATAAGG+AGG 0.605480 tig0032775:-21756 Msa1450060:CDS
GATGGATGCATAGAAAACTT+CGG 0.607420 tig0032775:-22443 Msa1450060:CDS
CTGAAACCGAACTTTGGGAG+CGG 0.608233 tig0032775:-21857 Msa1450060:CDS
CATCTGAGAATATGGAGCAG+TGG 0.617126 tig0032775:-20516 Msa1450060:CDS
GCAGGCAACATCAGTTGATG+AGG 0.617201 tig0032775:-21900 Msa1450060:CDS
AACCAAGAGTTCCAATTGCT+AGG 0.618323 tig0032775:+21708 Msa1450060:intergenic
AAAATAGCTTACCAGTGACC+AGG 0.620578 tig0032775:+22394 Msa1450060:intergenic
TTCCAATTGCTAGGAAGCCG+GGG 0.628342 tig0032775:+21717 Msa1450060:intergenic
GCAGTGGATCAAAACAGATG+TGG 0.633740 tig0032775:-20500 Msa1450060:CDS
ACATAGGACAGTGCAAGAAG+AGG 0.639282 tig0032775:-20576 Msa1450060:CDS
TGTTTCTGATAATTCAACTG+CGG 0.657633 tig0032775:+21427 Msa1450060:intergenic
GAGTGGTAGAGCAGTAGACG+AGG 0.660218 tig0032775:-21771 Msa1450060:CDS
TCCATGACTATTTCTCTCTG+CGG 0.668096 tig0032775:+21505 Msa1450060:intergenic
AAGAAAAGAATGAATGAGGG+AGG 0.670784 tig0032775:-20670 Msa1450060:CDS
TGCTGAAGTTGAATCAACAG+AGG 0.671518 tig0032775:+21181 Msa1450060:intergenic
ACTTTCAGTTCTATACACTG+TGG 0.672237 tig0032775:-19877 Msa1450060:three_prime_UTR
TGTCCGGATATGGTTTCACA+AGG 0.673692 tig0032775:-20071 Msa1450060:three_prime_UTR
ACCGCAGAGAGAAATAGTCA+TGG 0.693609 tig0032775:-21506 Msa1450060:CDS
GAGGTCTGGGAAGAAGCATG+GGG 0.705384 tig0032775:+21200 Msa1450060:intergenic
GAAGAAGATAAGGAGGCATG+GGG 0.707091 tig0032775:-21749 Msa1450060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAATCAAAAGAAAAAA+GGG + tig0032775:21904-21923 Msa1450060:intergenic 10.0%
!! ATTAAAAATCAAAAGAAAAA+AGG + tig0032775:21905-21924 Msa1450060:intergenic 10.0%
!!! CAATTTTTTTTTTATACTTT+TGG + tig0032775:21954-21973 Msa1450060:intergenic 10.0%
!! AATATATATTATCTTCTTAA+TGG + tig0032775:23370-23389 Msa1450060:intergenic 10.0%
!! ATTTCTACTATTATACAAAT+AGG + tig0032775:20416-20435 Msa1450060:intergenic 15.0%
!! TATAATAGTAGAAATATAGT+TGG - tig0032775:20421-20440 Msa1450060:intron 15.0%
!! TCTTAAAATATTTGAAAGAA+GGG + tig0032775:20520-20539 Msa1450060:intergenic 15.0%
!! ATCTTAAAATATTTGAAAGA+AGG + tig0032775:20521-20540 Msa1450060:intergenic 15.0%
!! ATAACTTATACTTACAAAAT+CGG + tig0032775:20884-20903 Msa1450060:intergenic 15.0%
!! ATAACTTTAGGTAAAAAAAA+AGG - tig0032775:21105-21124 Msa1450060:intron 15.0%
!! AAATCATTTATGTTATCTAT+TGG + tig0032775:21244-21263 Msa1450060:intergenic 15.0%
!! ATAGATAACATAAATGATTT+AGG - tig0032775:21244-21263 Msa1450060:CDS 15.0%
!!! TTTTTTATAATTTGTTAGGA+TGG + tig0032775:21870-21889 Msa1450060:intergenic 15.0%
!!! TGGATTTTTTATAATTTGTT+AGG + tig0032775:21874-21893 Msa1450060:intergenic 15.0%
!! AAATTTGATTATAGTAAACT+TGG + tig0032775:21989-22008 Msa1450060:intergenic 15.0%
!!! ACTAAGCAAAATATATTTTA+TGG + tig0032775:23442-23461 Msa1450060:intergenic 15.0%
!! ACAAATATTATAACTAACAA+AGG + tig0032775:23551-23570 Msa1450060:intergenic 15.0%
!! TTCCAATTAGTATTTATTTA+AGG - tig0032775:24680-24699 Msa1450060:intron 15.0%
!! TAACTATATTAATTAATCTG+TGG - tig0032775:24718-24737 Msa1450060:intron 15.0%
!! AACTATATTAATTAATCTGT+GGG - tig0032775:24719-24738 Msa1450060:intron 15.0%
!! GAAACAATTAAAATAAGATT+CGG - tig0032775:25500-25519 Msa1450060:intron 15.0%
!! ACCATATTAAAGTTTGTATT+GGG + tig0032775:20908-20927 Msa1450060:intergenic 20.0%
!! TACCATATTAAAGTTTGTAT+TGG + tig0032775:20909-20928 Msa1450060:intergenic 20.0%
!! AAAAATGTCAACATAACTTT+AGG - tig0032775:21093-21112 Msa1450060:intron 20.0%
!! AGACATGCAAAATAAAATAA+TGG - tig0032775:21159-21178 Msa1450060:intron 20.0%
!!! AATCGGTATATTTTTTTTCT+TGG + tig0032775:21376-21395 Msa1450060:intergenic 20.0%
!! ATTTGATGTCAAACATTAAT+CGG + tig0032775:21393-21412 Msa1450060:intergenic 20.0%
!! TATTTAGAAAATGAAAGAAC+TGG - tig0032775:21499-21518 Msa1450060:CDS 20.0%
!! TGTTTACCAAAAAATCATAA+CGG - tig0032775:22072-22091 Msa1450060:intron 20.0%
!!! AAAGAATTTCCCTTATTTTA+TGG + tig0032775:22496-22515 Msa1450060:intergenic 20.0%
!! TGTTGACATATAATAAACAA+TGG - tig0032775:22719-22738 Msa1450060:intron 20.0%
!!! ATTAATTCATTGTCTACTTT+TGG + tig0032775:23211-23230 Msa1450060:intergenic 20.0%
!! CTAATTCATTTCTATCAATT+TGG + tig0032775:23397-23416 Msa1450060:intergenic 20.0%
!! TGAGAATATAATAACTGAAA+AGG - tig0032775:23845-23864 Msa1450060:intron 20.0%
!! TTGATTAATCTTTATAAGAG+TGG - tig0032775:24475-24494 Msa1450060:intron 20.0%
!! TAATTGTATAGAAAGTTGTT+GGG - tig0032775:24520-24539 Msa1450060:intron 20.0%
!! AATACTAATTGGAAACAAAA+AGG + tig0032775:24674-24693 Msa1450060:intergenic 20.0%
!! GACCTTAAATAAATACTAAT+TGG + tig0032775:24685-24704 Msa1450060:intergenic 20.0%
!! TGTCTTTAGTTAATTATTTG+AGG - tig0032775:25365-25384 Msa1450060:intron 20.0%
!!! TTAAAATAAGATTCGGTTTA+TGG - tig0032775:25507-25526 Msa1450060:intron 20.0%
!! AGTTTCAATTGATTGATAAC+TGG - tig0032775:20048-20067 Msa1450060:three_prime_UTR 25.0%
! TCATAGTATGAAAATAAGGA+AGG + tig0032775:20376-20395 Msa1450060:intergenic 25.0%
! TAGGTCATAGTATGAAAATA+AGG + tig0032775:20380-20399 Msa1450060:intergenic 25.0%
! TCTACTATTATACAAATAGG+TGG + tig0032775:20413-20432 Msa1450060:intergenic 25.0%
! ACATTTAAGAAACAGTCAAA+TGG + tig0032775:20549-20568 Msa1450060:intergenic 25.0%
!! ATTTGACTGTTTCTTAAATG+TGG - tig0032775:20548-20567 Msa1450060:CDS 25.0%
! ATTATTTGATGAATGATGTC+AGG - tig0032775:20712-20731 Msa1450060:CDS 25.0%
! GTATTAGAACCTATCAATAA+GGG - tig0032775:20926-20945 Msa1450060:intron 25.0%
!! ATTATATCTTTTGATCCAAG+TGG + tig0032775:21028-21047 Msa1450060:intergenic 25.0%
! CATTTATGTTATCTATTGGA+CGG + tig0032775:21240-21259 Msa1450060:intergenic 25.0%
! TTGGAATACACATGAAAATA+CGG + tig0032775:21292-21311 Msa1450060:intergenic 25.0%
!! TTACTATTGATGGTTGATAT+TGG + tig0032775:21311-21330 Msa1450060:intergenic 25.0%
! ATATCAACCATCAATAGTAA+AGG - tig0032775:21311-21330 Msa1450060:CDS 25.0%
!!! GGTATATTTTTTTTCTTGGT+TGG + tig0032775:21372-21391 Msa1450060:intergenic 25.0%
!!! AAGTTAGTTTTTTTGACCAA+AGG - tig0032775:21439-21458 Msa1450060:CDS 25.0%
! AGTTAGATAAACTTGGAATA+TGG - tig0032775:21466-21485 Msa1450060:CDS 25.0%
! GTTAGATAAACTTGGAATAT+GGG - tig0032775:21467-21486 Msa1450060:CDS 25.0%
!!! GCTTTTTTGTATGTTTGTTT+TGG - tig0032775:21521-21540 Msa1450060:CDS 25.0%
! AATAAAGTTAAGTGACATGT+TGG - tig0032775:21619-21638 Msa1450060:CDS 25.0%
!! TAGGTATAAAACCAATTTTG+AGG - tig0032775:21702-21721 Msa1450060:CDS 25.0%
! AAAGAAAAAAGGGTAAAAGT+TGG + tig0032775:21894-21913 Msa1450060:intergenic 25.0%
! TGTCTTCAATACTGAAAAAT+TGG - tig0032775:22044-22063 Msa1450060:intron 25.0%
!!! ATAGAACCGTTATGATTTTT+TGG + tig0032775:22081-22100 Msa1450060:intergenic 25.0%
! AATTATACACACATCTCTAT+CGG - tig0032775:22445-22464 Msa1450060:CDS 25.0%
! TCATCATGAGCAAAATTATA+AGG - tig0032775:22605-22624 Msa1450060:five_prime_UTR 25.0%
!! TGATGATGAATCTATATAAG+AGG + tig0032775:22842-22861 Msa1450060:intergenic 25.0%
! ATAACACTATCAAAGAATGA+AGG - tig0032775:22905-22924 Msa1450060:intron 25.0%
!! TATATATGTTTGATAGCTGT+TGG - tig0032775:23142-23161 Msa1450060:intron 25.0%
! AATTAATGCCAGATTTAACT+AGG - tig0032775:23224-23243 Msa1450060:intron 25.0%
! TATTATATTCTCAACAGAGA+TGG + tig0032775:23838-23857 Msa1450060:intergenic 25.0%
! GAAAAAAGCTCAAGAAAAAA+AGG - tig0032775:24258-24277 Msa1450060:intron 25.0%
! ATTAATCTTTATAAGAGTGG+TGG - tig0032775:24478-24497 Msa1450060:intron 25.0%
! GTAATTGTATAGAAAGTTGT+TGG - tig0032775:24519-24538 Msa1450060:intron 25.0%
! AATTGTATAGAAAGTTGTTG+GGG - tig0032775:24521-24540 Msa1450060:intron 25.0%
! AACTTAATAACGAAAGTTGT+TGG - tig0032775:24571-24590 Msa1450060:intron 25.0%
! ACTTAATAACGAAAGTTGTT+GGG - tig0032775:24572-24591 Msa1450060:intron 25.0%
! ATATAGTTAGCTAAAGTCTA+GGG + tig0032775:24707-24726 Msa1450060:intergenic 25.0%
! AATATAGTTAGCTAAAGTCT+AGG + tig0032775:24708-24727 Msa1450060:intergenic 25.0%
! AAGAAGAAAAGAATGAATGA+GGG - tig0032775:24811-24830 Msa1450060:intron 25.0%
!!! CAACTTTATTACTTTTGTTG+TGG + tig0032775:24840-24859 Msa1450060:intergenic 25.0%
! CAAAAGTAATAAAGTTGAAG+AGG - tig0032775:24843-24862 Msa1450060:intron 25.0%
! AACTAAAGACACAAAACATA+AGG + tig0032775:25356-25375 Msa1450060:intergenic 25.0%
! TAATGTAATGTTCAAGAGTA+AGG - tig0032775:25547-25566 Msa1450060:intron 25.0%
AACTAAAAGATGCTCAACAT+TGG + tig0032775:20032-20051 Msa1450060:intergenic 30.0%
TCAAAAATCGAGCATCTTAT+AGG + tig0032775:20087-20106 Msa1450060:intergenic 30.0%
ATAAACTTGTCTGATGACAT+CGG - tig0032775:20114-20133 Msa1450060:three_prime_UTR 30.0%
AACAAAACATGTCAAGCAAA+TGG + tig0032775:20259-20278 Msa1450060:intergenic 30.0%
!!! TGACATGTTTTGTTTTCTCA+TGG - tig0032775:20265-20284 Msa1450060:three_prime_UTR 30.0%
AAACAAAAATTTGAGAGAGC+AGG + tig0032775:20330-20349 Msa1450060:intergenic 30.0%
! AGTTTTTCTTTGGCATGAAA+CGG + tig0032775:20664-20683 Msa1450060:intergenic 30.0%
! TGAAGTTCGAAGTTTTTCTT+TGG + tig0032775:20674-20693 Msa1450060:intergenic 30.0%
GCCCAATACAAACTTTAATA+TGG - tig0032775:20904-20923 Msa1450060:intron 30.0%
GGTATTAGAACCTATCAATA+AGG - tig0032775:20925-20944 Msa1450060:intron 30.0%
GGTGCTTGTATATGTATAAA+CGG + tig0032775:20957-20976 Msa1450060:intergenic 30.0%
TATTCAAGAATGAGACAACA+TGG - tig0032775:21057-21076 Msa1450060:intron 30.0%
ACTTTGACCTTTACTATTGA+TGG + tig0032775:21321-21340 Msa1450060:intergenic 30.0%
! AAAAAACTAACTTGCACTTG+TGG + tig0032775:21432-21451 Msa1450060:intergenic 30.0%
!!! AGTGACATGTTGGTTTTTTT+AGG - tig0032775:21629-21648 Msa1450060:CDS 30.0%
!!! GTGACATGTTGGTTTTTTTA+GGG - tig0032775:21630-21649 Msa1450060:CDS 30.0%
! TTTTATACCTACAACCATGT+TGG + tig0032775:21693-21712 Msa1450060:intergenic 30.0%
AATAAACAATTTGCAGCTAG+TGG - tig0032775:21789-21808 Msa1450060:CDS 30.0%
ATAAACAATTTGCAGCTAGT+GGG - tig0032775:21790-21809 Msa1450060:CDS 30.0%
! AGAACTTGCTTCAAGTTTAT+CGG + tig0032775:22017-22036 Msa1450060:intergenic 30.0%
! TTCAGTATTGAAGACAGAAT+CGG + tig0032775:22040-22059 Msa1450060:intergenic 30.0%
TTTGTGCAATAGATATAGAG+AGG - tig0032775:22136-22155 Msa1450060:intron 30.0%
ATACACAAGAAGCTGTAAAA+GGG - tig0032775:22232-22251 Msa1450060:intron 30.0%
AGATGTGTGTATAATTCGAT+TGG + tig0032775:22441-22460 Msa1450060:intergenic 30.0%
!!! ATAAGCATGTTTTTCTGGTT+CGG + tig0032775:22567-22586 Msa1450060:intergenic 30.0%
! GAAACATAAGCATGTTTTTC+TGG + tig0032775:22572-22591 Msa1450060:intergenic 30.0%
GAAAAACATGCTTATGTTTC+TGG - tig0032775:22572-22591 Msa1450060:intron 30.0%
ATCTCTTTATAGACATAAGC+AGG - tig0032775:22764-22783 Msa1450060:intron 30.0%
TGAATCTATATAAGAGGAGA+AGG + tig0032775:22836-22855 Msa1450060:intergenic 30.0%
!! AATTCATTGTCTACTTTTGG+AGG + tig0032775:23208-23227 Msa1450060:intergenic 30.0%
GGAGCAACAAATATATATGT+TGG + tig0032775:23421-23440 Msa1450060:intergenic 30.0%
TAATATTTGTGTTGCGTTTC+AGG - tig0032775:23561-23580 Msa1450060:intron 30.0%
AATATTTGTGTTGCGTTTCA+GGG - tig0032775:23562-23581 Msa1450060:intron 30.0%
AGATGAATCATCATTGTTGT+TGG + tig0032775:23937-23956 Msa1450060:intergenic 30.0%
AACAACAATGATGATTCATC+TGG - tig0032775:23936-23955 Msa1450060:intron 30.0%
! TGTTTCTGATAATTCAACTG+CGG + tig0032775:24060-24079 Msa1450060:intergenic 30.0%
CTTATTCTTTGACACTGATA+TGG + tig0032775:24093-24112 Msa1450060:intergenic 30.0%
CATATCAGTGTCAAAGAATA+AGG - tig0032775:24091-24110 Msa1450060:intron 30.0%
GGATGATACTGACAATAAAA+AGG - tig0032775:24202-24221 Msa1450060:intron 30.0%
TGATACTGACAATAAAAAGG+AGG - tig0032775:24205-24224 Msa1450060:intron 30.0%
AGACAGAAAACTGCATAATA+AGG - tig0032775:24325-24344 Msa1450060:intron 30.0%
AAGAGAAAAATGATTCGCAT+CGG - tig0032775:24429-24448 Msa1450060:intron 30.0%
ATTGTATAGAAAGTTGTTGG+GGG - tig0032775:24522-24541 Msa1450060:intron 30.0%
CTTAATAACGAAAGTTGTTG+GGG - tig0032775:24573-24592 Msa1450060:intron 30.0%
TTAATAACGAAAGTTGTTGG+GGG - tig0032775:24574-24593 Msa1450060:intron 30.0%
GAAACAAAAAGGCAAATGAT+TGG + tig0032775:24663-24682 Msa1450060:intergenic 30.0%
GAAGAAGAAAAGAATGAATG+AGG - tig0032775:24810-24829 Msa1450060:intron 30.0%
TGAAGATTCATCTGAGAATA+TGG - tig0032775:24960-24979 Msa1450060:intron 30.0%
TTAAATTGCAGACTTAGTGT+TGG - tig0032775:25185-25204 Msa1450060:intron 30.0%
! TCATATTAATTTGATGCTCG+TGG + tig0032775:25250-25269 Msa1450060:intergenic 30.0%
TATGAAAGATATGATCGTCA+TGG - tig0032775:25265-25284 Msa1450060:intron 30.0%
ATGAAAGATATGATCGTCAT+GGG - tig0032775:25266-25285 Msa1450060:intron 30.0%
AAGACTATGCAATGCAATAA+TGG - tig0032775:25289-25308 Msa1450060:intron 30.0%
AGACTATGCAATGCAATAAT+GGG - tig0032775:25290-25309 Msa1450060:intron 30.0%
TAAGCAAGTGAATGTAAAGA+AGG - tig0032775:25478-25497 Msa1450060:intron 30.0%
! AGTTTTCATATGCACTGTCA+AGG - tig0032775:19896-19915 Msa1450060:three_prime_UTR 35.0%
TTGGGGAAGGATTAAAATGT+CGG + tig0032775:20006-20025 Msa1450060:intergenic 35.0%
GATCAGAGACATGTTGTATT+TGG - tig0032775:20152-20171 Msa1450060:three_prime_UTR 35.0%
TGTTGTATTTGGCCAAGTAT+TGG - tig0032775:20163-20182 Msa1450060:three_prime_UTR 35.0%
AGTTGGAGTTAGTACCATAT+TGG - tig0032775:20438-20457 Msa1450060:intron 35.0%
GTTGGAGTTAGTACCATATT+GGG - tig0032775:20439-20458 Msa1450060:intron 35.0%
! GGATTTGAAATCTCCCAATA+TGG + tig0032775:20455-20474 Msa1450060:intergenic 35.0%
GGAGATTTCAAATCCTACAT+GGG - tig0032775:20460-20479 Msa1450060:intron 35.0%
AAAGAAGGGTTTCTGCAATT+TGG + tig0032775:20506-20525 Msa1450060:intergenic 35.0%
! GACTGTTTCTTAAATGTGGA+AGG - tig0032775:20552-20571 Msa1450060:CDS 35.0%
!! ACTTACAAAATCGGTTTGCA+AGG + tig0032775:20875-20894 Msa1450060:intergenic 35.0%
TGAAAAAACCAAGTTCCACT+TGG - tig0032775:21010-21029 Msa1450060:intron 35.0%
! GCATGTCTTTTTATCTCTTC+AGG + tig0032775:21147-21166 Msa1450060:intergenic 35.0%
! TGTGCCTTTCTCTCTTTTAT+TGG - tig0032775:21212-21231 Msa1450060:CDS 35.0%
GGTTCCAATAAAAGAGAGAA+AGG + tig0032775:21219-21238 Msa1450060:intergenic 35.0%
ACACATGAAAATACGGTGTT+GGG + tig0032775:21285-21304 Msa1450060:intergenic 35.0%
TACACATGAAAATACGGTGT+TGG + tig0032775:21286-21305 Msa1450060:intergenic 35.0%
! GTTTATCTAACTTGCACCTT+TGG + tig0032775:21458-21477 Msa1450060:intergenic 35.0%
AGGTGCAAGTTAGATAAACT+TGG - tig0032775:21459-21478 Msa1450060:CDS 35.0%
TTCTACTCTACAGTACTACT+AGG - tig0032775:21549-21568 Msa1450060:CDS 35.0%
CAGCAAATAATGTACCAACA+TGG - tig0032775:21676-21695 Msa1450060:CDS 35.0%
TAATGTACCAACATGGTTGT+AGG - tig0032775:21683-21702 Msa1450060:CDS 35.0%
TGAAGAGCTTACCTCAAAAT+TGG + tig0032775:21716-21735 Msa1450060:intergenic 35.0%
CTCTTCAGTAAAATTCAACG+CGG - tig0032775:21729-21748 Msa1450060:CDS 35.0%
GTTAGGATGGATAACTTTGT+GGG + tig0032775:21857-21876 Msa1450060:intergenic 35.0%
TGTTAGGATGGATAACTTTG+TGG + tig0032775:21858-21877 Msa1450060:intergenic 35.0%
TTGTGTATCAAACACCTAAC+TGG + tig0032775:22220-22239 Msa1450060:intergenic 35.0%
GATACACAAGAAGCTGTAAA+AGG - tig0032775:22231-22250 Msa1450060:intron 35.0%
TACACAAGAAGCTGTAAAAG+GGG - tig0032775:22233-22252 Msa1450060:intron 35.0%
AAAGGCAAAGAGAAATCTTG+GGG + tig0032775:22309-22328 Msa1450060:intergenic 35.0%
GAAAGGCAAAGAGAAATCTT+GGG + tig0032775:22310-22329 Msa1450060:intergenic 35.0%
TGAAAGGCAAAGAGAAATCT+TGG + tig0032775:22311-22330 Msa1450060:intergenic 35.0%
AGATTTCTCTTTGCCTTTCA+TGG - tig0032775:22311-22330 Msa1450060:intron 35.0%
TGTGCATGTGCCATAAAATA+AGG - tig0032775:22483-22502 Msa1450060:intron 35.0%
GTGCATGTGCCATAAAATAA+GGG - tig0032775:22484-22503 Msa1450060:intron 35.0%
GCAAAATATACGCGAGATAT+GGG + tig0032775:22523-22542 Msa1450060:intergenic 35.0%
AGCAAAATATACGCGAGATA+TGG + tig0032775:22524-22543 Msa1450060:intergenic 35.0%
GCTATTACTAGTAGGCTATT+TGG - tig0032775:22695-22714 Msa1450060:intron 35.0%
!! GTAGCTTTATGGAATGTGAT+CGG - tig0032775:22786-22805 Msa1450060:intron 35.0%
AGGTAACTAAGATCAGTCAA+TGG - tig0032775:22925-22944 Msa1450060:intron 35.0%
TATATGCAGTTGAAGCAGTA+AGG + tig0032775:22973-22992 Msa1450060:intergenic 35.0%
!! CTTAATTTGCAGCAGTTACT+TGG - tig0032775:23019-23038 Msa1450060:intron 35.0%
GATGGATGCATAGAAAACTT+CGG - tig0032775:23041-23060 Msa1450060:intron 35.0%
TAGACATGCCTAGTTAAATC+TGG + tig0032775:23235-23254 Msa1450060:intergenic 35.0%
TTTACAGTGGGCAATACTTA+TGG + tig0032775:23331-23350 Msa1450060:intergenic 35.0%
! TTTGTGAGCTAGTTTACAGT+GGG + tig0032775:23343-23362 Msa1450060:intergenic 35.0%
! TCTAGAATGATCAGAAGTCT+TGG - tig0032775:23461-23480 Msa1450060:intron 35.0%
CTAACAAAGGATGTCTATGA+CGG + tig0032775:23538-23557 Msa1450060:intergenic 35.0%
! ACTATCTGAAACCGAACTTT+GGG - tig0032775:23622-23641 Msa1450060:intron 35.0%
AGAAAATCTTTCGAAGCAGT+TGG - tig0032775:23690-23709 Msa1450060:intron 35.0%
GAAAATCTTTCGAAGCAGTT+GGG - tig0032775:23691-23710 Msa1450060:intron 35.0%
! ATGGAAAATGATGGTGTTAG+TGG + tig0032775:23819-23838 Msa1450060:intergenic 35.0%
TCAACAGAGATGGAAAATGA+TGG + tig0032775:23828-23847 Msa1450060:intergenic 35.0%
TACTGACAATAAAAAGGAGG+AGG - tig0032775:24208-24227 Msa1450060:intron 35.0%
!!! CTTTTTTCTCATGAGATGCA+TGG + tig0032775:24246-24265 Msa1450060:intergenic 35.0%
AAGAAAAGAATGAATGAGGG+AGG - tig0032775:24814-24833 Msa1450060:intron 35.0%
ACTTTCAGTTCTATACACTG+TGG - tig0032775:25607-25626 Msa1450060:five_prime_UTR 35.0%
! AACTGACTCCCATTAGTGTT+GGG + tig0032775:19880-19899 None:intergenic 40.0%
! AAACTGACTCCCATTAGTGT+TGG + tig0032775:19881-19900 None:intergenic 40.0%
!!! ACCCAAGCTTAGTGGATTTT+GGG + tig0032775:19963-19982 Msa1450060:intergenic 40.0%
TCTAATAGACCCAAGCTTAG+TGG + tig0032775:19971-19990 Msa1450060:intergenic 40.0%
ATGCTCAACATTGGAACTTG+GGG + tig0032775:20023-20042 Msa1450060:intergenic 40.0%
GATGCTCAACATTGGAACTT+GGG + tig0032775:20024-20043 Msa1450060:intergenic 40.0%
AGATGCTCAACATTGGAACT+TGG + tig0032775:20025-20044 Msa1450060:intergenic 40.0%
!! GTATTTGGCCAAGTATTGGA+AGG - tig0032775:20167-20186 Msa1450060:three_prime_UTR 40.0%
!! TGTTAGGTTGATTGAACCAC+AGG - tig0032775:20199-20218 Msa1450060:three_prime_UTR 40.0%
AGATTGTGGTTATCAGTGAC+TGG - tig0032775:20226-20245 Msa1450060:three_prime_UTR 40.0%
! CTCTTTATTTCTTGCTGCTG+AGG - tig0032775:20291-20310 Msa1450060:CDS 40.0%
! TTTATTTCTTGCTGCTGAGG+AGG - tig0032775:20294-20313 Msa1450060:intron 40.0%
AGGAAGGTAGAGAACTCATT+TGG + tig0032775:20360-20379 Msa1450060:intergenic 40.0%
AATAGGTGGCAAGAGTTTGT+AGG + tig0032775:20399-20418 Msa1450060:intergenic 40.0%
GGGAGATTTCAAATCCTACA+TGG - tig0032775:20459-20478 Msa1450060:intron 40.0%
! CTGCAATTTGGCTTAACTTG+AGG + tig0032775:20494-20513 Msa1450060:intergenic 40.0%
! CTAGCACTAGTCTGCAAAAT+TGG - tig0032775:20592-20611 Msa1450060:CDS 40.0%
TTAAGCTGTCTTGTGGTACA+TGG - tig0032775:20737-20756 Msa1450060:CDS 40.0%
! CTTTTGATCCAAGTGGAACT+TGG + tig0032775:21021-21040 Msa1450060:intergenic 40.0%
CAGGGTATAAAGCTCATTTC+TGG - tig0032775:21816-21835 Msa1450060:CDS 40.0%
ATGGATAACTTTGTGGGTGT+GGG + tig0032775:21851-21870 Msa1450060:intergenic 40.0%
TGTTACATCCACAACCAGTT+AGG - tig0032775:22203-22222 Msa1450060:intron 40.0%
ATCAAACACCTAACTGGTTG+TGG + tig0032775:22214-22233 Msa1450060:intergenic 40.0%
ACACAAGAAGCTGTAAAAGG+GGG - tig0032775:22234-22253 Msa1450060:intron 40.0%
ATAATGTGACCATTCTCGTG+AGG - tig0032775:22264-22283 Msa1450060:intron 40.0%
TAATGTGACCATTCTCGTGA+GGG - tig0032775:22265-22284 Msa1450060:intron 40.0%
CTGAAGAAAACTTCCGTTGT+TGG - tig0032775:22375-22394 Msa1450060:intron 40.0%
!! TTCGGTTTCTAGAATCTGAC+CGG + tig0032775:22549-22568 Msa1450060:intergenic 40.0%
TGCAGCTTGACAAAACAGTA+AGG + tig0032775:22634-22653 Msa1450060:intergenic 40.0%
TTTGTCAAGCTGCACATGAT+CGG - tig0032775:22640-22659 Msa1450060:intron 40.0%
ACTAGTAATAGCTACCGTGT+GGG + tig0032775:22687-22706 Msa1450060:intergenic 40.0%
TACTAGTAATAGCTACCGTG+TGG + tig0032775:22688-22707 Msa1450060:intergenic 40.0%
ACACGGTAGCTATTACTAGT+AGG - tig0032775:22687-22706 Msa1450060:intron 40.0%
! GACATAAGCAGGTAGCTTTA+TGG - tig0032775:22775-22794 Msa1450060:intron 40.0%
ATTTGCAGCAGTTACTTGGA+TGG - tig0032775:23023-23042 Msa1450060:intron 40.0%
AAAATAGCTTACCAGTGACC+AGG + tig0032775:23093-23112 Msa1450060:intergenic 40.0%
! GTTTGTGAGCTAGTTTACAG+TGG + tig0032775:23344-23363 Msa1450060:intergenic 40.0%
! CACTATCTGAAACCGAACTT+TGG - tig0032775:23621-23640 Msa1450060:intron 40.0%
! TATTTTCCGCTCCCAAAGTT+CGG + tig0032775:23636-23655 Msa1450060:intergenic 40.0%
AGTAGACGAGGAAGAAGATA+AGG - tig0032775:23725-23744 Msa1450060:intron 40.0%
TTCCTAGCAATTGGAACTCT+TGG - tig0032775:23774-23793 Msa1450060:intron 40.0%
AACCAAGAGTTCCAATTGCT+AGG + tig0032775:23779-23798 Msa1450060:intergenic 40.0%
AGCAATTGGAACTCTTGGTT+TGG - tig0032775:23779-23798 Msa1450060:intron 40.0%
!! TGGAACTCTTGGTTTGGAAT+CGG - tig0032775:23785-23804 Msa1450060:intron 40.0%
! AATGATGGTGTTAGTGGTGA+TGG + tig0032775:23813-23832 Msa1450060:intergenic 40.0%
! TCCATGACTATTTCTCTCTG+CGG + tig0032775:23982-24001 Msa1450060:intergenic 40.0%
AAACTCCATTTGTCCACTTC+AGG - tig0032775:24019-24038 Msa1450060:intron 40.0%
AACTCCATTTGTCCACTTCA+GGG - tig0032775:24020-24039 Msa1450060:intron 40.0%
ATATCCCTGAAGTGGACAAA+TGG + tig0032775:24027-24046 Msa1450060:intergenic 40.0%
GAGATGCATGGCAGATTTAT+TGG + tig0032775:24234-24253 Msa1450060:intergenic 40.0%
AGTTGAATCAACAGAGGTCT+GGG + tig0032775:24300-24319 Msa1450060:intergenic 40.0%
AAGTTGAATCAACAGAGGTC+TGG + tig0032775:24301-24320 Msa1450060:intergenic 40.0%
TGCTGAAGTTGAATCAACAG+AGG + tig0032775:24306-24325 Msa1450060:intergenic 40.0%
TCCAAGATTCATGTGCAACT+TGG - tig0032775:24405-24424 Msa1450060:intron 40.0%
AGATTCTCCAGATGTTTCAC+CGG - tig0032775:24746-24765 Msa1450060:intron 40.0%
!! GATTTTCAGGGTGAACTTTC+CGG + tig0032775:24768-24787 Msa1450060:intergenic 40.0%
! CTGCACATGTTGGATTTTCA+GGG + tig0032775:24780-24799 Msa1450060:intergenic 40.0%
! TCTGCACATGTTGGATTTTC+AGG + tig0032775:24781-24800 Msa1450060:intergenic 40.0%
ATACAGCCAAAAAGAGCAGT+TGG - tig0032775:24877-24896 Msa1450060:intron 40.0%
! TCCTTTCCAACTGCTCTTTT+TGG + tig0032775:24886-24905 Msa1450060:intergenic 40.0%
GCAGTTGGAAAGGAAAACAT+AGG - tig0032775:24892-24911 Msa1450060:intron 40.0%
ACATCTATCTCACTCTGCAT+TGG - tig0032775:25032-25051 Msa1450060:intron 40.0%
GAAATGAAAACTCAAGCGCA+TGG - tig0032775:25142-25161 Msa1450060:intron 40.0%
!! CTTAGTGTTGGAGCTCTAAA+AGG - tig0032775:25197-25216 Msa1450060:intron 40.0%
!! TTGGAGCTCTAAAAGGCAAA+GGG - tig0032775:25204-25223 Msa1450060:intron 40.0%
!! AAGAGTGTTAAGAGTCTGTC+CGG - tig0032775:25397-25416 Msa1450060:intron 40.0%
CATCCTTGTGAAACCATATC+CGG + tig0032775:25419-25438 Msa1450060:intergenic 40.0%
TGCCCAAAATCCACTAAGCT+TGG - tig0032775:19958-19977 Msa1450060:three_prime_UTR 45.0%
GCCCAAAATCCACTAAGCTT+GGG - tig0032775:19959-19978 Msa1450060:three_prime_UTR 45.0%
!!! GACCCAAGCTTAGTGGATTT+TGG + tig0032775:19964-19983 Msa1450060:intergenic 45.0%
TCAACATTGGAACTTGGGGA+AGG + tig0032775:20019-20038 Msa1450060:intergenic 45.0%
TGTCCTTGCCTTCCAATACT+TGG + tig0032775:20178-20197 Msa1450060:intergenic 45.0%
TGGAAGGCAAGGACATTGTT+AGG - tig0032775:20183-20202 Msa1450060:three_prime_UTR 45.0%
TAACCACAATCTGTGTCCTG+TGG + tig0032775:20218-20237 Msa1450060:intergenic 45.0%
TGAGGATACTCTACCCATGT+AGG + tig0032775:20476-20495 Msa1450060:intergenic 45.0%
TGATGACTGCCGTTGATGTT+CGG - tig0032775:20619-20638 Msa1450060:CDS 45.0%
AGATGAACCCCGAACATCAA+CGG + tig0032775:20631-20650 Msa1450060:intergenic 45.0%
TTGGCATGAAACGGAAGAAG+AGG + tig0032775:20655-20674 Msa1450060:intergenic 45.0%
!! TCAGGCTTTAAGCTGTCTTG+TGG - tig0032775:20730-20749 Msa1450060:CDS 45.0%
ACGGTGATGCCCTTATTGAT+AGG + tig0032775:20938-20957 Msa1450060:intergenic 45.0%
ACGCTCAGCACTATTAGGTT+TGG + tig0032775:20978-20997 Msa1450060:intergenic 45.0%
TCTACAGTACTACTAGGTCC+AGG - tig0032775:21555-21574 Msa1450060:CDS 45.0%
CTACAGTACTACTAGGTCCA+GGG - tig0032775:21556-21575 Msa1450060:CDS 45.0%
TACAGTACTACTAGGTCCAG+GGG - tig0032775:21557-21576 Msa1450060:CDS 45.0%
CATATATTACCCGAATCCCC+TGG + tig0032775:21576-21595 Msa1450060:intergenic 45.0%
!! ATTTGCAGCTAGTGGGTTTC+AGG - tig0032775:21797-21816 Msa1450060:CDS 45.0%
!! TTTGCAGCTAGTGGGTTTCA+GGG - tig0032775:21798-21817 Msa1450060:CDS 45.0%
TGGATAACTTTGTGGGTGTG+GGG + tig0032775:21850-21869 Msa1450060:intergenic 45.0%
GATGGATAACTTTGTGGGTG+TGG + tig0032775:21852-21871 Msa1450060:intergenic 45.0%
AATGTGACCATTCTCGTGAG+GGG - tig0032775:22266-22285 Msa1450060:intron 45.0%
TTCTCTTTGCCTTTCATGGC+TGG - tig0032775:22315-22334 Msa1450060:intron 45.0%
TGGATATCACACGCCAACAA+CGG + tig0032775:22391-22410 Msa1450060:intergenic 45.0%
ATCCATTGCCTGAAGATTGC+TGG - tig0032775:22406-22425 Msa1450060:CDS 45.0%
TCTATCGGTGTGTATCACTG+TGG - tig0032775:22460-22479 Msa1450060:intron 45.0%
! CTCGCGTATATTTTGCTTCC+CGG - tig0032775:22527-22546 Msa1450060:intron 45.0%
!! TCGGTTTCTAGAATCTGACC+GGG + tig0032775:22548-22567 Msa1450060:intergenic 45.0%
CGGATAGGTGAAGATTGATC+AGG - tig0032775:22660-22679 Msa1450060:intron 45.0%
AAGATTGATCAGGACCCACA+CGG - tig0032775:22670-22689 Msa1450060:intron 45.0%
CACTGAACCTTTCAAAGACC+TGG - tig0032775:23072-23091 Msa1450060:intron 45.0%
ATGGACGGTGATATATGCGT+TGG + tig0032775:23312-23331 Msa1450060:intergenic 45.0%
CAGTGGGCAATACTTATGGA+CGG + tig0032775:23327-23346 Msa1450060:intergenic 45.0%
CCATGAACTCAAGTGGCATT+CGG + tig0032775:23507-23526 Msa1450060:intergenic 45.0%
! ATGCCACTTGAGTTCATGGT+TGG - tig0032775:23508-23527 Msa1450060:intron 45.0%
CAAAGGATGTCTATGACGGT+TGG + tig0032775:23534-23553 Msa1450060:intergenic 45.0%
AGACGAGGAAGAAGATAAGG+AGG - tig0032775:23728-23747 Msa1450060:intron 45.0%
AGGAAGAAGATAAGGAGGCA+TGG - tig0032775:23733-23752 Msa1450060:intron 45.0%
! GGAAGAAGATAAGGAGGCAT+GGG - tig0032775:23734-23753 Msa1450060:intron 45.0%
! GAAGAAGATAAGGAGGCATG+GGG - tig0032775:23735-23754 Msa1450060:intron 45.0%
AGTTCCAATTGCTAGGAAGC+CGG + tig0032775:23772-23791 Msa1450060:intergenic 45.0%
GATCAGCTTCAGCTCATTCT+CGG + tig0032775:23883-23902 Msa1450060:intergenic 45.0%
ACCGCAGAGAGAAATAGTCA+TGG - tig0032775:23978-23997 Msa1450060:intron 45.0%
CCAAAGAGATATCCCTGAAG+TGG + tig0032775:24035-24054 Msa1450060:intergenic 45.0%
CCACTTCAGGGATATCTCTT+TGG - tig0032775:24032-24051 Msa1450060:intron 45.0%
GAGAAGCAAACAAGCAGATC+AGG - tig0032775:24160-24179 Msa1450060:intron 45.0%
GCAGATCAGGACAATCTTGT+TGG - tig0032775:24173-24192 Msa1450060:intron 45.0%
GGACAATCTTGTTGGAGCAA+AGG - tig0032775:24181-24200 Msa1450060:intron 45.0%
GCCAAGTTGCACATGAATCT+TGG + tig0032775:24409-24428 Msa1450060:intergenic 45.0%
GAACTTTCCGGTGAAACATC+TGG + tig0032775:24756-24775 Msa1450060:intergenic 45.0%
TCGTACTTCTCTGCACATGT+TGG + tig0032775:24790-24809 Msa1450060:intergenic 45.0%
GCCAAAAAGAGCAGTTGGAA+AGG - tig0032775:24882-24901 Msa1450060:intron 45.0%
ACATAGGACAGTGCAAGAAG+AGG - tig0032775:24908-24927 Msa1450060:intron 45.0%
AGGCAACTCCAAATTACCCT+TGG - tig0032775:24928-24947 Msa1450060:intron 45.0%
CAACTCCAAATTACCCTTGG+CGG - tig0032775:24931-24950 Msa1450060:intron 45.0%
CATCTGAGAATATGGAGCAG+TGG - tig0032775:24968-24987 Msa1450060:intron 45.0%
GCAGTGGATCAAAACAGATG+TGG - tig0032775:24984-25003 Msa1450060:intron 45.0%
! CAAGCGCATGGCTAAGATTT+TGG - tig0032775:25154-25173 Msa1450060:intron 45.0%
!! GTTGGAGCTCTAAAAGGCAA+AGG - tig0032775:25203-25222 Msa1450060:intron 45.0%
TCTAAAAGGCAAAGGGCGAA+CGG - tig0032775:25211-25230 Msa1450060:intron 45.0%
GTTAAGAGTCTGTCCGGATA+TGG - tig0032775:25403-25422 Msa1450060:intron 45.0%
TGTCCGGATATGGTTTCACA+AGG - tig0032775:25413-25432 Msa1450060:intron 45.0%
ACATGTCTCTGATCCAGCCA+CGG + tig0032775:20146-20165 Msa1450060:intergenic 50.0%
!! TGGCCAAGTATTGGAAGGCA+AGG - tig0032775:20172-20191 Msa1450060:three_prime_UTR 50.0%
GAACCACAGGACACAGATTG+TGG - tig0032775:20212-20231 Msa1450060:three_prime_UTR 50.0%
GATGACTGCCGTTGATGTTC+GGG - tig0032775:20620-20639 Msa1450060:CDS 50.0%
ATGACTGCCGTTGATGTTCG+GGG - tig0032775:20621-20640 Msa1450060:CDS 50.0%
! ACCTAATAGTGCTGAGCGTG+AGG - tig0032775:20979-20998 Msa1450060:intron 50.0%
! CCTAATAGTGCTGAGCGTGA+GGG - tig0032775:20980-20999 Msa1450060:intron 50.0%
ACTACTAGGTCCAGGGGATT+CGG - tig0032775:21563-21582 Msa1450060:CDS 50.0%
ATGTGACCATTCTCGTGAGG+GGG - tig0032775:22267-22286 Msa1450060:intron 50.0%
CATGTACGACCAGTGACACA+TGG + tig0032775:22343-22362 Msa1450060:intergenic 50.0%
! CATGTGTCACTGGTCGTACA+TGG - tig0032775:22341-22360 Msa1450060:intron 50.0%
TGCCAGCAATCTTCAGGCAA+TGG + tig0032775:22411-22430 Msa1450060:intergenic 50.0%
CGTGTATGCCAGCAATCTTC+AGG + tig0032775:22417-22436 Msa1450060:intergenic 50.0%
CAAGCTGCACATGATCGGAT+AGG - tig0032775:22645-22664 Msa1450060:intron 50.0%
CCAGTGACCAGGTCTTTGAA+AGG + tig0032775:23082-23101 Msa1450060:intergenic 50.0%
CCTTTCAAAGACCTGGTCAC+TGG - tig0032775:23079-23098 Msa1450060:intron 50.0%
ATCAGAAGTCTTGGCGAGTG+AGG - tig0032775:23470-23489 Msa1450060:intron 50.0%
TCAGAAGTCTTGGCGAGTGA+GGG - tig0032775:23471-23490 Msa1450060:intron 50.0%
! CCGAATGCCACTTGAGTTCA+TGG - tig0032775:23504-23523 Msa1450060:intron 50.0%
TGGCCAACCATGAACTCAAG+TGG + tig0032775:23514-23533 Msa1450060:intergenic 50.0%
TTTGTGTTGCGTTTCAGGGC+AGG - tig0032775:23566-23585 Msa1450060:intron 50.0%
! GCAGGCAACATCAGTTGATG+AGG - tig0032775:23584-23603 Msa1450060:intron 50.0%
! CTGAAACCGAACTTTGGGAG+CGG - tig0032775:23627-23646 Msa1450060:intron 50.0%
TCTTTCGAAGCAGTTGGGAG+TGG - tig0032775:23696-23715 Msa1450060:intron 50.0%
TTCCAATTGCTAGGAAGCCG+GGG + tig0032775:23770-23789 Msa1450060:intergenic 50.0%
GTTCCAATTGCTAGGAAGCC+GGG + tig0032775:23771-23790 Msa1450060:intergenic 50.0%
TTCTCTCTGCGGTGCTTACA+TGG + tig0032775:23971-23990 Msa1450060:intergenic 50.0%
ACACAGCCAGAGAACAACAC+TGG - tig0032775:24124-24143 Msa1450060:intron 50.0%
CACAGCCAGAGAACAACACT+GGG - tig0032775:24125-24144 Msa1450060:intron 50.0%
! AGAGGTCTGGGAAGAAGCAT+GGG + tig0032775:24288-24307 Msa1450060:intergenic 50.0%
CCCTCACGCTCAGCACTATT+AGG + tig0032775:20983-21002 Msa1450060:intergenic 55.0%
CTACTAGGTCCAGGGGATTC+GGG - tig0032775:21564-21583 Msa1450060:CDS 55.0%
CACATGGCACCAGCCATGAA+AGG + tig0032775:22327-22346 Msa1450060:intergenic 55.0%
GAGTGGTAGAGCAGTAGACG+AGG - tig0032775:23713-23732 Msa1450060:intron 55.0%
! GAAGATAAGGAGGCATGGGG+TGG - tig0032775:23738-23757 Msa1450060:intron 55.0%
! GCATGGGGTGGTATTTTCCC+CGG - tig0032775:23750-23769 Msa1450060:intron 55.0%
TTCCCCGGCTTCCTAGCAAT+TGG - tig0032775:23765-23784 Msa1450060:intron 55.0%
! GCTCACCCAGTGTTGTTCTC+TGG + tig0032775:24133-24152 Msa1450060:intergenic 55.0%
! GAGGTCTGGGAAGAAGCATG+GGG + tig0032775:24287-24306 Msa1450060:intergenic 55.0%
CAGAGGTCTGGGAAGAAGCA+TGG + tig0032775:24289-24308 Msa1450060:intergenic 55.0%
CTCCAAATTACCCTTGGCGG+TGG - tig0032775:24934-24953 Msa1450060:intron 55.0%
TGCCACCGCCAAGGGTAATT+TGG + tig0032775:24939-24958 Msa1450060:intergenic 55.0%
ATCTTCACTGCCACCGCCAA+GGG + tig0032775:24947-24966 Msa1450060:intergenic 55.0%
AATCTTCACTGCCACCGCCA+AGG + tig0032775:24948-24967 Msa1450060:intergenic 55.0%
AGGCAAAGGGCGAACGGAAT+TGG - tig0032775:25217-25236 Msa1450060:intron 55.0%
GGCAAAGGGCGAACGGAATT+GGG - tig0032775:25218-25237 Msa1450060:intron 55.0%
GATGACATCGGCAGACACCG+TGG - tig0032775:20126-20145 Msa1450060:three_prime_UTR 60.0%
GCAGATCCCCCTCACGAGAA+TGG + tig0032775:22276-22295 Msa1450060:intergenic 60.0%
TCTCGTGAGGGGGATCTGCT+AGG - tig0032775:22277-22296 Msa1450060:intron 60.0%
!! TGGCTGGTGCCATGTGTCAC+TGG - tig0032775:22331-22350 Msa1450060:intron 60.0%
ACATCGGCAGACACCGTGGC+TGG - tig0032775:20130-20149 Msa1450060:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
tig0032775 gene 19876 25630 19876 ID=Msa1450060;Name=Msa1450060
tig0032775 mRNA 19876 25630 19876 ID=Msa1450060-mRNA-1;Parent=Msa1450060;Name=Msa1450060-mRNA-1;_AED=0.13;_eAED=0.13;_QI=112|1|1|1|0.6|0.66|6|415|373
tig0032775 exon 19876 20310 19876 ID=Msa1450060-mRNA-1:exon:17260;Parent=Msa1450060-mRNA-1
tig0032775 exon 20497 20758 20497 ID=Msa1450060-mRNA-1:exon:17259;Parent=Msa1450060-mRNA-1
tig0032775 exon 21160 21923 21160 ID=Msa1450060-mRNA-1:exon:17258;Parent=Msa1450060-mRNA-1
tig0032775 exon 22406 22475 22406 ID=Msa1450060-mRNA-1:exon:17257;Parent=Msa1450060-mRNA-1
tig0032775 exon 22580 22655 22580 ID=Msa1450060-mRNA-1:exon:17256;Parent=Msa1450060-mRNA-1
tig0032775 exon 25589 25630 25589 ID=Msa1450060-mRNA-1:exon:17255;Parent=Msa1450060-mRNA-1
tig0032775 five_prime_UTR 25589 25630 25589 ID=Msa1450060-mRNA-1:five_prime_utr;Parent=Msa1450060-mRNA-1
tig0032775 five_prime_UTR 22586 22655 22586 ID=Msa1450060-mRNA-1:five_prime_utr;Parent=Msa1450060-mRNA-1
tig0032775 CDS 22580 22585 22580 ID=Msa1450060-mRNA-1:cds;Parent=Msa1450060-mRNA-1
tig0032775 CDS 22406 22475 22406 ID=Msa1450060-mRNA-1:cds;Parent=Msa1450060-mRNA-1
tig0032775 CDS 21160 21923 21160 ID=Msa1450060-mRNA-1:cds;Parent=Msa1450060-mRNA-1
tig0032775 CDS 20497 20758 20497 ID=Msa1450060-mRNA-1:cds;Parent=Msa1450060-mRNA-1
tig0032775 CDS 20291 20310 20291 ID=Msa1450060-mRNA-1:cds;Parent=Msa1450060-mRNA-1
tig0032775 three_prime_UTR 19876 20290 19876 ID=Msa1450060-mRNA-1:three_prime_utr;Parent=Msa1450060-mRNA-1
Gene Sequence

>Msa1450060

ATGAAGCAGTTACTTGGATGGATGCATAGAAAACTTCGGCAGAATAGCACTGAACCTTTCAAAGACCTGGTCACTGGGCAGGCAACATCAGTTGATGAGGAACACAACTACTATCACTATCTGAAACCGAACTTTGGGAGCGGAAAATATGTGAAACAAACTCAGAAAGAGCAGTTTAAGCTTAGAAAATCTTTCGAAGCAGTTGGGAGTGGTAGAGCAGTAGACGAGGAAGAAGATAAGGAGGCATGGGGTGGTATTTTCCCCGGCTTCCTAGCAATTGGAACTCTTGGTTTGGAATCGGATCCATCACCACTAACACCATCATTTTCCATCTCTGTTGAGAATATAATAACTGAAAAGGAAGCTGAAGTGACCGAGAATGAGCTGAAGCTGATCAACAATGAGCTAGAGAAAGTTCTCGTGCTAACCAACAACAATGATGATTCATCTGGCAGAAACAGCCATGTAAGCACCGCAGAGAGAAATAGTCATGGACGCATCAGCATAGAATCAAACTCCATTTGTCCACTTCAGGGATATCTCTTTGGATCCGCAGTTGAATTATCAGAAACAAAAACTTCTTCCATATCAGTGTCAAAGAATAAGGAGCAGCAACAACACAGCCAGAGAACAACACTGGGTGAGCTGTTTCAGAGAAGCAAACAAGCAGATCAGGACAATCTTGTTGGAGCAAAGGATGATACTGACAATAAAAAGGAGGAGGCCAATAAATCTGCCATGCATCTCATGAGAAAAAAGCTCAAGAAAAAAAGGACGCCCCATGCTTCTTCCCAGACCTCTGTTGATTCAACTTCAGCAGACAGAAAACTGCATAATAAGATTCTCCAGATGTTTCACCGGAAAGTTCACCCTGAAAATCCAACATGTGCAGAGAAGTACGAGAAGAAGAAAAGAATGAATGAGGGAGGCCACAACAAAAGTAATAAAGTTGAAGAGGAATCTATAATGATACAGCCAAAAAGAGCAGTTGGAAAGGAAAACATAGGACAGTGCAAGAAGAGGCAACTCCAAATTACCCTTGGCGGTGGCAGTGAAGATTCATCTGAGAATATGGAGCAGTGGATCAAAACAGATGTGGATTACTTAGTGTTGGAGCTCTAA

Protein sequence

>Msa1450060

MKQLLGWMHRKLRQNSTEPFKDLVTGQATSVDEEHNYYHYLKPNFGSGKYVKQTQKEQFKLRKSFEAVGSGRAVDEEEDKEAWGGIFPGFLAIGTLGLESDPSPLTPSFSISVENIITEKEAEVTENELKLINNELEKVLVLTNNNDDSSGRNSHVSTAERNSHGRISIESNSICPLQGYLFGSAVELSETKTSSISVSKNKEQQQHSQRTTLGELFQRSKQADQDNLVGAKDDTDNKKEEANKSAMHLMRKKLKKKRTPHASSQTSVDSTSADRKLHNKILQMFHRKVHPENPTCAEKYEKKKRMNEGGHNKSNKVEEESIMIQPKRAVGKENIGQCKKRQLQITLGGGSEDSSENMEQWIKTDVDYLVLEL*