Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1450060 | sp|Q5XV40|LAZY1_ARATH | 34.367 | 387 | 208 | 14 | 3 | 373 | 2 | 358 | 1.75e-41 | 152 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1450060 | G7JC25 | 94.340 | 371 | 20 | 1 | 3 | 373 | 2 | 371 | 0.0 | 689 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1379590 | Msa1450060 | 0.816813 | 4.557780e-52 | -8.615850e-47 |
Msa1424640 | Msa1450060 | 0.820553 | 6.454732e-53 | -8.615850e-47 |
Msa0757800 | Msa1450060 | 0.808348 | 3.237598e-50 | -8.615850e-47 |
Msa0422020 | Msa1450060 | 0.908532 | 1.542531e-81 | -8.615850e-47 |
Msa0468590 | Msa1450060 | 0.883330 | 4.915755e-71 | -8.615850e-47 |
Msa0277420 | Msa1450060 | 0.826049 | 3.356841e-54 | -8.615850e-47 |
Msa0312530 | Msa1450060 | 0.814909 | 1.211423e-51 | -8.615850e-47 |
Msa0317270 | Msa1450060 | 0.801240 | 9.886588e-49 | -8.615850e-47 |
Msa1168550 | Msa1450060 | 0.807825 | 4.182922e-50 | -8.615850e-47 |
Msa1168590 | Msa1450060 | 0.807015 | 6.214343e-50 | -8.615850e-47 |
Msa0514470 | Msa1450060 | 0.891084 | 5.483823e-74 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1450060 | MtrunA17_Chr3g0122881 | 94.340 | 371 | 20 | 1 | 3 | 373 | 2 | 371 | 0.0 | 689 |
Msa1450060 | MtrunA17_Chr7g0222391 | 44.286 | 420 | 145 | 20 | 4 | 373 | 3 | 383 | 2.34e-82 | 256 |
Msa1450060 | MtrunA17_Chr7g0224731 | 36.082 | 388 | 184 | 13 | 3 | 373 | 2 | 342 | 1.02e-51 | 175 |
Msa1450060 | MtrunA17_Chr7g0224671 | 30.887 | 327 | 148 | 13 | 1 | 302 | 17 | 290 | 1.56e-24 | 103 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1450060 | AT5G14090.1 | 34.367 | 387 | 208 | 14 | 3 | 373 | 2 | 358 | 1.78e-42 | 152 |
Msa1450060 | AT5G14090.2 | 33.333 | 282 | 163 | 8 | 3 | 271 | 2 | 271 | 3.56e-28 | 112 |
Find 110 sgRNAs with CRISPR-Local
Find 376 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTAAAATAAGATTCGGTTTA+TGG | 0.065232 | tig0032775:-19977 | Msa1450060:three_prime_UTR |
GAGATGCATGGCAGATTTAT+TGG | 0.247230 | tig0032775:+21253 | Msa1450060:intergenic |
TGCCACCGCCAAGGGTAATT+TGG | 0.255351 | tig0032775:+20548 | Msa1450060:intergenic |
CTTATTCTTTGACACTGATA+TGG | 0.261165 | tig0032775:+21394 | Msa1450060:intergenic |
CCACTTCAGGGATATCTCTT+TGG | 0.265174 | tig0032775:-21452 | Msa1450060:CDS |
CATATCAGTGTCAAAGAATA+AGG | 0.288207 | tig0032775:-21393 | Msa1450060:CDS |
AGGCAAAGGGCGAACGGAAT+TGG | 0.300171 | tig0032775:-20267 | Msa1450060:three_prime_UTR |
AAGACTATGCAATGCAATAA+TGG | 0.301066 | tig0032775:-20195 | Msa1450060:three_prime_UTR |
TGAAGATTCATCTGAGAATA+TGG | 0.319257 | tig0032775:-20524 | Msa1450060:CDS |
CTTAGTGTTGGAGCTCTAAA+AGG | 0.331716 | tig0032775:-20287 | Msa1450060:exon |
GTTAAGAGTCTGTCCGGATA+TGG | 0.336650 | tig0032775:-20081 | Msa1450060:three_prime_UTR |
TTCTCTCTGCGGTGCTTACA+TGG | 0.339766 | tig0032775:+21516 | Msa1450060:intergenic |
TGTCTTTAGTTAATTATTTG+AGG | 0.346140 | tig0032775:-20119 | Msa1450060:three_prime_UTR |
AGACAGAAAACTGCATAATA+AGG | 0.354735 | tig0032775:-21159 | Msa1450060:intron |
CTTAATTTGCAGCAGTTACT+TGG | 0.355697 | tig0032775:-22465 | Msa1450060:intron |
GGATGATACTGACAATAAAA+AGG | 0.366676 | tig0032775:-21282 | Msa1450060:CDS |
AAACTCCATTTGTCCACTTC+AGG | 0.368249 | tig0032775:-21465 | Msa1450060:CDS |
TTCCTAGCAATTGGAACTCT+TGG | 0.378228 | tig0032775:-21710 | Msa1450060:CDS |
AGCAATTGGAACTCTTGGTT+TGG | 0.393170 | tig0032775:-21705 | Msa1450060:CDS |
CACTATCTGAAACCGAACTT+TGG | 0.396952 | tig0032775:-21863 | Msa1450060:CDS |
GATCAGCTTCAGCTCATTCT+CGG | 0.397412 | tig0032775:+21604 | None:intergenic |
AATGCTGGTCCCAACACTAA+TGG | 0.397418 | tig0032775:-25616 | None:intergenic |
TTCCCCGGCTTCCTAGCAAT+TGG | 0.406570 | tig0032775:-21719 | Msa1450060:CDS |
GGCAAAGGGCGAACGGAATT+GGG | 0.408082 | tig0032775:-20266 | Msa1450060:three_prime_UTR |
GAGAAGCAAACAAGCAGATC+AGG | 0.413070 | tig0032775:-21324 | Msa1450060:CDS |
GAACTTTCCGGTGAAACATC+TGG | 0.414604 | tig0032775:+20731 | Msa1450060:intergenic |
AAGTTGAATCAACAGAGGTC+TGG | 0.422480 | tig0032775:+21186 | Msa1450060:intergenic |
GAAACAATTAAAATAAGATT+CGG | 0.422974 | tig0032775:-19984 | Msa1450060:three_prime_UTR |
TGGAACTCTTGGTTTGGAAT+CGG | 0.430619 | tig0032775:-21699 | Msa1450060:CDS |
ACTATCTGAAACCGAACTTT+GGG | 0.435339 | tig0032775:-21862 | Msa1450060:CDS |
AGACTATGCAATGCAATAAT+GGG | 0.436065 | tig0032775:-20194 | Msa1450060:three_prime_UTR |
TAATGTAATGTTCAAGAGTA+AGG | 0.439574 | tig0032775:-19937 | Msa1450060:three_prime_UTR |
ATGCTGGTCCCAACACTAAT+GGG | 0.440075 | tig0032775:-25615 | None:intergenic |
GCAGATCAGGACAATCTTGT+TGG | 0.449301 | tig0032775:-21311 | Msa1450060:CDS |
AACTCCATTTGTCCACTTCA+GGG | 0.453747 | tig0032775:-21464 | Msa1450060:CDS |
GAAGAAGAAAAGAATGAATG+AGG | 0.455837 | tig0032775:-20674 | Msa1450060:CDS |
GCTCACCCAGTGTTGTTCTC+TGG | 0.456925 | tig0032775:+21354 | Msa1450060:intergenic |
AATGATGGTGTTAGTGGTGA+TGG | 0.457780 | tig0032775:+21674 | Msa1450060:intergenic |
GTTCCAATTGCTAGGAAGCC+GGG | 0.462497 | tig0032775:+21716 | Msa1450060:intergenic |
AGAAAATCTTTCGAAGCAGT+TGG | 0.467282 | tig0032775:-21794 | Msa1450060:CDS |
TGAGAATATAATAACTGAAA+AGG | 0.468108 | tig0032775:-21639 | Msa1450060:CDS |
AACAACAATGATGATTCATC+TGG | 0.470245 | tig0032775:-21548 | Msa1450060:CDS |
GAAAATCTTTCGAAGCAGTT+GGG | 0.473047 | tig0032775:-21793 | Msa1450060:CDS |
AGATGAATCATCATTGTTGT+TGG | 0.478539 | tig0032775:+21550 | Msa1450060:intergenic |
ATGGAAAATGATGGTGTTAG+TGG | 0.481586 | tig0032775:+21668 | Msa1450060:intergenic |
AACTGACTCCCATTAGTGTT+GGG | 0.488895 | tig0032775:+25607 | Msa1450060:intergenic |
TAAGCAAGTGAATGTAAAGA+AGG | 0.489282 | tig0032775:-20006 | Msa1450060:three_prime_UTR |
ATATCCCTGAAGTGGACAAA+TGG | 0.494244 | tig0032775:+21460 | Msa1450060:intergenic |
AACTAAAGACACAAAACATA+AGG | 0.499571 | tig0032775:+20131 | Msa1450060:intergenic |
TCATATTAATTTGATGCTCG+TGG | 0.500786 | tig0032775:+20237 | Msa1450060:intergenic |
AGTTGAATCAACAGAGGTCT+GGG | 0.504381 | tig0032775:+21187 | Msa1450060:intergenic |
AAGAGTGTTAAGAGTCTGTC+CGG | 0.508459 | tig0032775:-20087 | Msa1450060:three_prime_UTR |
TTAAATTGCAGACTTAGTGT+TGG | 0.509625 | tig0032775:-20299 | Msa1450060:intron |
CATCCTTGTGAAACCATATC+CGG | 0.509628 | tig0032775:+20068 | Msa1450060:intergenic |
GGAAGAAGATAAGGAGGCAT+GGG | 0.511093 | tig0032775:-21750 | Msa1450060:CDS |
CTTTCAGTTCTATACACTGT+GGG | 0.515729 | tig0032775:-19876 | Msa1450060:three_prime_UTR |
ATTTGCAGCAGTTACTTGGA+TGG | 0.516221 | tig0032775:-22461 | Msa1450060:intron |
AAGAAGAAAAGAATGAATGA+GGG | 0.517369 | tig0032775:-20673 | Msa1450060:CDS |
AGTAGACGAGGAAGAAGATA+AGG | 0.519096 | tig0032775:-21759 | Msa1450060:CDS |
AGTTCCAATTGCTAGGAAGC+CGG | 0.522924 | tig0032775:+21715 | Msa1450060:intergenic |
CAAAAGTAATAAAGTTGAAG+AGG | 0.525680 | tig0032775:-20641 | Msa1450060:CDS |
AGAGGTCTGGGAAGAAGCAT+GGG | 0.527489 | tig0032775:+21199 | Msa1450060:intergenic |
CAGAGGTCTGGGAAGAAGCA+TGG | 0.527966 | tig0032775:+21198 | Msa1450060:intergenic |
CAACTCCAAATTACCCTTGG+CGG | 0.530405 | tig0032775:-20553 | Msa1450060:CDS |
CACTGAACCTTTCAAAGACC+TGG | 0.535667 | tig0032775:-22412 | Msa1450060:CDS |
ATCTTCACTGCCACCGCCAA+GGG | 0.536347 | tig0032775:+20540 | Msa1450060:intergenic |
TATGAAAGATATGATCGTCA+TGG | 0.538059 | tig0032775:-20219 | Msa1450060:three_prime_UTR |
TATTATATTCTCAACAGAGA+TGG | 0.542260 | tig0032775:+21649 | Msa1450060:intergenic |
GGACAATCTTGTTGGAGCAA+AGG | 0.550435 | tig0032775:-21303 | Msa1450060:CDS |
TCTTTCGAAGCAGTTGGGAG+TGG | 0.552062 | tig0032775:-21788 | Msa1450060:CDS |
AGATTCTCCAGATGTTTCAC+CGG | 0.556872 | tig0032775:-20738 | Msa1450060:CDS |
AATCTTCACTGCCACCGCCA+AGG | 0.558247 | tig0032775:+20539 | Msa1450060:intergenic |
CCTTTCAAAGACCTGGTCAC+TGG | 0.558420 | tig0032775:-22405 | Msa1450060:intron |
AAACTGACTCCCATTAGTGT+TGG | 0.558780 | tig0032775:+25606 | Msa1450060:intergenic |
TCGTACTTCTCTGCACATGT+TGG | 0.562643 | tig0032775:+20697 | Msa1450060:intergenic |
CCAGTGACCAGGTCTTTGAA+AGG | 0.563072 | tig0032775:+22405 | Msa1450060:intergenic |
ATGAAAGATATGATCGTCAT+GGG | 0.567897 | tig0032775:-20218 | Msa1450060:three_prime_UTR |
AGGAAGAAGATAAGGAGGCA+TGG | 0.571385 | tig0032775:-21751 | Msa1450060:CDS |
CTCCAAATTACCCTTGGCGG+TGG | 0.573132 | tig0032775:-20550 | Msa1450060:CDS |
CCAAAGAGATATCCCTGAAG+TGG | 0.575875 | tig0032775:+21452 | Msa1450060:intergenic |
GAAGATAAGGAGGCATGGGG+TGG | 0.581558 | tig0032775:-21746 | Msa1450060:CDS |
TCAACAGAGATGGAAAATGA+TGG | 0.585903 | tig0032775:+21659 | Msa1450060:intergenic |
AGGCAACTCCAAATTACCCT+TGG | 0.588508 | tig0032775:-20556 | Msa1450060:CDS |
TTGGAGCTCTAAAAGGCAAA+GGG | 0.588657 | tig0032775:-20280 | Msa1450060:exon |
ATAACACTATCAAAGAATGA+AGG | 0.592308 | tig0032775:-22579 | Msa1450060:intron |
TCTAAAAGGCAAAGGGCGAA+CGG | 0.593553 | tig0032775:-20273 | Msa1450060:exon |
GCAGTTGGAAAGGAAAACAT+AGG | 0.595191 | tig0032775:-20592 | Msa1450060:CDS |
CACAGCCAGAGAACAACACT+GGG | 0.596125 | tig0032775:-21359 | Msa1450060:CDS |
GTTGGAGCTCTAAAAGGCAA+AGG | 0.599355 | tig0032775:-20281 | Msa1450060:exon |
ACACAGCCAGAGAACAACAC+TGG | 0.600693 | tig0032775:-21360 | Msa1450060:CDS |
AGACGAGGAAGAAGATAAGG+AGG | 0.605480 | tig0032775:-21756 | Msa1450060:CDS |
GATGGATGCATAGAAAACTT+CGG | 0.607420 | tig0032775:-22443 | Msa1450060:CDS |
CTGAAACCGAACTTTGGGAG+CGG | 0.608233 | tig0032775:-21857 | Msa1450060:CDS |
CATCTGAGAATATGGAGCAG+TGG | 0.617126 | tig0032775:-20516 | Msa1450060:CDS |
GCAGGCAACATCAGTTGATG+AGG | 0.617201 | tig0032775:-21900 | Msa1450060:CDS |
AACCAAGAGTTCCAATTGCT+AGG | 0.618323 | tig0032775:+21708 | Msa1450060:intergenic |
AAAATAGCTTACCAGTGACC+AGG | 0.620578 | tig0032775:+22394 | Msa1450060:intergenic |
TTCCAATTGCTAGGAAGCCG+GGG | 0.628342 | tig0032775:+21717 | Msa1450060:intergenic |
GCAGTGGATCAAAACAGATG+TGG | 0.633740 | tig0032775:-20500 | Msa1450060:CDS |
ACATAGGACAGTGCAAGAAG+AGG | 0.639282 | tig0032775:-20576 | Msa1450060:CDS |
TGTTTCTGATAATTCAACTG+CGG | 0.657633 | tig0032775:+21427 | Msa1450060:intergenic |
GAGTGGTAGAGCAGTAGACG+AGG | 0.660218 | tig0032775:-21771 | Msa1450060:CDS |
TCCATGACTATTTCTCTCTG+CGG | 0.668096 | tig0032775:+21505 | Msa1450060:intergenic |
AAGAAAAGAATGAATGAGGG+AGG | 0.670784 | tig0032775:-20670 | Msa1450060:CDS |
TGCTGAAGTTGAATCAACAG+AGG | 0.671518 | tig0032775:+21181 | Msa1450060:intergenic |
ACTTTCAGTTCTATACACTG+TGG | 0.672237 | tig0032775:-19877 | Msa1450060:three_prime_UTR |
TGTCCGGATATGGTTTCACA+AGG | 0.673692 | tig0032775:-20071 | Msa1450060:three_prime_UTR |
ACCGCAGAGAGAAATAGTCA+TGG | 0.693609 | tig0032775:-21506 | Msa1450060:CDS |
GAGGTCTGGGAAGAAGCATG+GGG | 0.705384 | tig0032775:+21200 | Msa1450060:intergenic |
GAAGAAGATAAGGAGGCATG+GGG | 0.707091 | tig0032775:-21749 | Msa1450060:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAAAAATCAAAAGAAAAAA+GGG | + | tig0032775:21904-21923 | Msa1450060:intergenic | 10.0% |
!! | ATTAAAAATCAAAAGAAAAA+AGG | + | tig0032775:21905-21924 | Msa1450060:intergenic | 10.0% |
!!! | CAATTTTTTTTTTATACTTT+TGG | + | tig0032775:21954-21973 | Msa1450060:intergenic | 10.0% |
!! | AATATATATTATCTTCTTAA+TGG | + | tig0032775:23370-23389 | Msa1450060:intergenic | 10.0% |
!! | ATTTCTACTATTATACAAAT+AGG | + | tig0032775:20416-20435 | Msa1450060:intergenic | 15.0% |
!! | TATAATAGTAGAAATATAGT+TGG | - | tig0032775:20421-20440 | Msa1450060:intron | 15.0% |
!! | TCTTAAAATATTTGAAAGAA+GGG | + | tig0032775:20520-20539 | Msa1450060:intergenic | 15.0% |
!! | ATCTTAAAATATTTGAAAGA+AGG | + | tig0032775:20521-20540 | Msa1450060:intergenic | 15.0% |
!! | ATAACTTATACTTACAAAAT+CGG | + | tig0032775:20884-20903 | Msa1450060:intergenic | 15.0% |
!! | ATAACTTTAGGTAAAAAAAA+AGG | - | tig0032775:21105-21124 | Msa1450060:intron | 15.0% |
!! | AAATCATTTATGTTATCTAT+TGG | + | tig0032775:21244-21263 | Msa1450060:intergenic | 15.0% |
!! | ATAGATAACATAAATGATTT+AGG | - | tig0032775:21244-21263 | Msa1450060:CDS | 15.0% |
!!! | TTTTTTATAATTTGTTAGGA+TGG | + | tig0032775:21870-21889 | Msa1450060:intergenic | 15.0% |
!!! | TGGATTTTTTATAATTTGTT+AGG | + | tig0032775:21874-21893 | Msa1450060:intergenic | 15.0% |
!! | AAATTTGATTATAGTAAACT+TGG | + | tig0032775:21989-22008 | Msa1450060:intergenic | 15.0% |
!!! | ACTAAGCAAAATATATTTTA+TGG | + | tig0032775:23442-23461 | Msa1450060:intergenic | 15.0% |
!! | ACAAATATTATAACTAACAA+AGG | + | tig0032775:23551-23570 | Msa1450060:intergenic | 15.0% |
!! | TTCCAATTAGTATTTATTTA+AGG | - | tig0032775:24680-24699 | Msa1450060:intron | 15.0% |
!! | TAACTATATTAATTAATCTG+TGG | - | tig0032775:24718-24737 | Msa1450060:intron | 15.0% |
!! | AACTATATTAATTAATCTGT+GGG | - | tig0032775:24719-24738 | Msa1450060:intron | 15.0% |
!! | GAAACAATTAAAATAAGATT+CGG | - | tig0032775:25500-25519 | Msa1450060:intron | 15.0% |
!! | ACCATATTAAAGTTTGTATT+GGG | + | tig0032775:20908-20927 | Msa1450060:intergenic | 20.0% |
!! | TACCATATTAAAGTTTGTAT+TGG | + | tig0032775:20909-20928 | Msa1450060:intergenic | 20.0% |
!! | AAAAATGTCAACATAACTTT+AGG | - | tig0032775:21093-21112 | Msa1450060:intron | 20.0% |
!! | AGACATGCAAAATAAAATAA+TGG | - | tig0032775:21159-21178 | Msa1450060:intron | 20.0% |
!!! | AATCGGTATATTTTTTTTCT+TGG | + | tig0032775:21376-21395 | Msa1450060:intergenic | 20.0% |
!! | ATTTGATGTCAAACATTAAT+CGG | + | tig0032775:21393-21412 | Msa1450060:intergenic | 20.0% |
!! | TATTTAGAAAATGAAAGAAC+TGG | - | tig0032775:21499-21518 | Msa1450060:CDS | 20.0% |
!! | TGTTTACCAAAAAATCATAA+CGG | - | tig0032775:22072-22091 | Msa1450060:intron | 20.0% |
!!! | AAAGAATTTCCCTTATTTTA+TGG | + | tig0032775:22496-22515 | Msa1450060:intergenic | 20.0% |
!! | TGTTGACATATAATAAACAA+TGG | - | tig0032775:22719-22738 | Msa1450060:intron | 20.0% |
!!! | ATTAATTCATTGTCTACTTT+TGG | + | tig0032775:23211-23230 | Msa1450060:intergenic | 20.0% |
!! | CTAATTCATTTCTATCAATT+TGG | + | tig0032775:23397-23416 | Msa1450060:intergenic | 20.0% |
!! | TGAGAATATAATAACTGAAA+AGG | - | tig0032775:23845-23864 | Msa1450060:intron | 20.0% |
!! | TTGATTAATCTTTATAAGAG+TGG | - | tig0032775:24475-24494 | Msa1450060:intron | 20.0% |
!! | TAATTGTATAGAAAGTTGTT+GGG | - | tig0032775:24520-24539 | Msa1450060:intron | 20.0% |
!! | AATACTAATTGGAAACAAAA+AGG | + | tig0032775:24674-24693 | Msa1450060:intergenic | 20.0% |
!! | GACCTTAAATAAATACTAAT+TGG | + | tig0032775:24685-24704 | Msa1450060:intergenic | 20.0% |
!! | TGTCTTTAGTTAATTATTTG+AGG | - | tig0032775:25365-25384 | Msa1450060:intron | 20.0% |
!!! | TTAAAATAAGATTCGGTTTA+TGG | - | tig0032775:25507-25526 | Msa1450060:intron | 20.0% |
!! | AGTTTCAATTGATTGATAAC+TGG | - | tig0032775:20048-20067 | Msa1450060:three_prime_UTR | 25.0% |
! | TCATAGTATGAAAATAAGGA+AGG | + | tig0032775:20376-20395 | Msa1450060:intergenic | 25.0% |
! | TAGGTCATAGTATGAAAATA+AGG | + | tig0032775:20380-20399 | Msa1450060:intergenic | 25.0% |
! | TCTACTATTATACAAATAGG+TGG | + | tig0032775:20413-20432 | Msa1450060:intergenic | 25.0% |
! | ACATTTAAGAAACAGTCAAA+TGG | + | tig0032775:20549-20568 | Msa1450060:intergenic | 25.0% |
!! | ATTTGACTGTTTCTTAAATG+TGG | - | tig0032775:20548-20567 | Msa1450060:CDS | 25.0% |
! | ATTATTTGATGAATGATGTC+AGG | - | tig0032775:20712-20731 | Msa1450060:CDS | 25.0% |
! | GTATTAGAACCTATCAATAA+GGG | - | tig0032775:20926-20945 | Msa1450060:intron | 25.0% |
!! | ATTATATCTTTTGATCCAAG+TGG | + | tig0032775:21028-21047 | Msa1450060:intergenic | 25.0% |
! | CATTTATGTTATCTATTGGA+CGG | + | tig0032775:21240-21259 | Msa1450060:intergenic | 25.0% |
! | TTGGAATACACATGAAAATA+CGG | + | tig0032775:21292-21311 | Msa1450060:intergenic | 25.0% |
!! | TTACTATTGATGGTTGATAT+TGG | + | tig0032775:21311-21330 | Msa1450060:intergenic | 25.0% |
! | ATATCAACCATCAATAGTAA+AGG | - | tig0032775:21311-21330 | Msa1450060:CDS | 25.0% |
!!! | GGTATATTTTTTTTCTTGGT+TGG | + | tig0032775:21372-21391 | Msa1450060:intergenic | 25.0% |
!!! | AAGTTAGTTTTTTTGACCAA+AGG | - | tig0032775:21439-21458 | Msa1450060:CDS | 25.0% |
! | AGTTAGATAAACTTGGAATA+TGG | - | tig0032775:21466-21485 | Msa1450060:CDS | 25.0% |
! | GTTAGATAAACTTGGAATAT+GGG | - | tig0032775:21467-21486 | Msa1450060:CDS | 25.0% |
!!! | GCTTTTTTGTATGTTTGTTT+TGG | - | tig0032775:21521-21540 | Msa1450060:CDS | 25.0% |
! | AATAAAGTTAAGTGACATGT+TGG | - | tig0032775:21619-21638 | Msa1450060:CDS | 25.0% |
!! | TAGGTATAAAACCAATTTTG+AGG | - | tig0032775:21702-21721 | Msa1450060:CDS | 25.0% |
! | AAAGAAAAAAGGGTAAAAGT+TGG | + | tig0032775:21894-21913 | Msa1450060:intergenic | 25.0% |
! | TGTCTTCAATACTGAAAAAT+TGG | - | tig0032775:22044-22063 | Msa1450060:intron | 25.0% |
!!! | ATAGAACCGTTATGATTTTT+TGG | + | tig0032775:22081-22100 | Msa1450060:intergenic | 25.0% |
! | AATTATACACACATCTCTAT+CGG | - | tig0032775:22445-22464 | Msa1450060:CDS | 25.0% |
! | TCATCATGAGCAAAATTATA+AGG | - | tig0032775:22605-22624 | Msa1450060:five_prime_UTR | 25.0% |
!! | TGATGATGAATCTATATAAG+AGG | + | tig0032775:22842-22861 | Msa1450060:intergenic | 25.0% |
! | ATAACACTATCAAAGAATGA+AGG | - | tig0032775:22905-22924 | Msa1450060:intron | 25.0% |
!! | TATATATGTTTGATAGCTGT+TGG | - | tig0032775:23142-23161 | Msa1450060:intron | 25.0% |
! | AATTAATGCCAGATTTAACT+AGG | - | tig0032775:23224-23243 | Msa1450060:intron | 25.0% |
! | TATTATATTCTCAACAGAGA+TGG | + | tig0032775:23838-23857 | Msa1450060:intergenic | 25.0% |
! | GAAAAAAGCTCAAGAAAAAA+AGG | - | tig0032775:24258-24277 | Msa1450060:intron | 25.0% |
! | ATTAATCTTTATAAGAGTGG+TGG | - | tig0032775:24478-24497 | Msa1450060:intron | 25.0% |
! | GTAATTGTATAGAAAGTTGT+TGG | - | tig0032775:24519-24538 | Msa1450060:intron | 25.0% |
! | AATTGTATAGAAAGTTGTTG+GGG | - | tig0032775:24521-24540 | Msa1450060:intron | 25.0% |
! | AACTTAATAACGAAAGTTGT+TGG | - | tig0032775:24571-24590 | Msa1450060:intron | 25.0% |
! | ACTTAATAACGAAAGTTGTT+GGG | - | tig0032775:24572-24591 | Msa1450060:intron | 25.0% |
! | ATATAGTTAGCTAAAGTCTA+GGG | + | tig0032775:24707-24726 | Msa1450060:intergenic | 25.0% |
! | AATATAGTTAGCTAAAGTCT+AGG | + | tig0032775:24708-24727 | Msa1450060:intergenic | 25.0% |
! | AAGAAGAAAAGAATGAATGA+GGG | - | tig0032775:24811-24830 | Msa1450060:intron | 25.0% |
!!! | CAACTTTATTACTTTTGTTG+TGG | + | tig0032775:24840-24859 | Msa1450060:intergenic | 25.0% |
! | CAAAAGTAATAAAGTTGAAG+AGG | - | tig0032775:24843-24862 | Msa1450060:intron | 25.0% |
! | AACTAAAGACACAAAACATA+AGG | + | tig0032775:25356-25375 | Msa1450060:intergenic | 25.0% |
! | TAATGTAATGTTCAAGAGTA+AGG | - | tig0032775:25547-25566 | Msa1450060:intron | 25.0% |
AACTAAAAGATGCTCAACAT+TGG | + | tig0032775:20032-20051 | Msa1450060:intergenic | 30.0% | |
TCAAAAATCGAGCATCTTAT+AGG | + | tig0032775:20087-20106 | Msa1450060:intergenic | 30.0% | |
ATAAACTTGTCTGATGACAT+CGG | - | tig0032775:20114-20133 | Msa1450060:three_prime_UTR | 30.0% | |
AACAAAACATGTCAAGCAAA+TGG | + | tig0032775:20259-20278 | Msa1450060:intergenic | 30.0% | |
!!! | TGACATGTTTTGTTTTCTCA+TGG | - | tig0032775:20265-20284 | Msa1450060:three_prime_UTR | 30.0% |
AAACAAAAATTTGAGAGAGC+AGG | + | tig0032775:20330-20349 | Msa1450060:intergenic | 30.0% | |
! | AGTTTTTCTTTGGCATGAAA+CGG | + | tig0032775:20664-20683 | Msa1450060:intergenic | 30.0% |
! | TGAAGTTCGAAGTTTTTCTT+TGG | + | tig0032775:20674-20693 | Msa1450060:intergenic | 30.0% |
GCCCAATACAAACTTTAATA+TGG | - | tig0032775:20904-20923 | Msa1450060:intron | 30.0% | |
GGTATTAGAACCTATCAATA+AGG | - | tig0032775:20925-20944 | Msa1450060:intron | 30.0% | |
GGTGCTTGTATATGTATAAA+CGG | + | tig0032775:20957-20976 | Msa1450060:intergenic | 30.0% | |
TATTCAAGAATGAGACAACA+TGG | - | tig0032775:21057-21076 | Msa1450060:intron | 30.0% | |
ACTTTGACCTTTACTATTGA+TGG | + | tig0032775:21321-21340 | Msa1450060:intergenic | 30.0% | |
! | AAAAAACTAACTTGCACTTG+TGG | + | tig0032775:21432-21451 | Msa1450060:intergenic | 30.0% |
!!! | AGTGACATGTTGGTTTTTTT+AGG | - | tig0032775:21629-21648 | Msa1450060:CDS | 30.0% |
!!! | GTGACATGTTGGTTTTTTTA+GGG | - | tig0032775:21630-21649 | Msa1450060:CDS | 30.0% |
! | TTTTATACCTACAACCATGT+TGG | + | tig0032775:21693-21712 | Msa1450060:intergenic | 30.0% |
AATAAACAATTTGCAGCTAG+TGG | - | tig0032775:21789-21808 | Msa1450060:CDS | 30.0% | |
ATAAACAATTTGCAGCTAGT+GGG | - | tig0032775:21790-21809 | Msa1450060:CDS | 30.0% | |
! | AGAACTTGCTTCAAGTTTAT+CGG | + | tig0032775:22017-22036 | Msa1450060:intergenic | 30.0% |
! | TTCAGTATTGAAGACAGAAT+CGG | + | tig0032775:22040-22059 | Msa1450060:intergenic | 30.0% |
TTTGTGCAATAGATATAGAG+AGG | - | tig0032775:22136-22155 | Msa1450060:intron | 30.0% | |
ATACACAAGAAGCTGTAAAA+GGG | - | tig0032775:22232-22251 | Msa1450060:intron | 30.0% | |
AGATGTGTGTATAATTCGAT+TGG | + | tig0032775:22441-22460 | Msa1450060:intergenic | 30.0% | |
!!! | ATAAGCATGTTTTTCTGGTT+CGG | + | tig0032775:22567-22586 | Msa1450060:intergenic | 30.0% |
! | GAAACATAAGCATGTTTTTC+TGG | + | tig0032775:22572-22591 | Msa1450060:intergenic | 30.0% |
GAAAAACATGCTTATGTTTC+TGG | - | tig0032775:22572-22591 | Msa1450060:intron | 30.0% | |
ATCTCTTTATAGACATAAGC+AGG | - | tig0032775:22764-22783 | Msa1450060:intron | 30.0% | |
TGAATCTATATAAGAGGAGA+AGG | + | tig0032775:22836-22855 | Msa1450060:intergenic | 30.0% | |
!! | AATTCATTGTCTACTTTTGG+AGG | + | tig0032775:23208-23227 | Msa1450060:intergenic | 30.0% |
GGAGCAACAAATATATATGT+TGG | + | tig0032775:23421-23440 | Msa1450060:intergenic | 30.0% | |
TAATATTTGTGTTGCGTTTC+AGG | - | tig0032775:23561-23580 | Msa1450060:intron | 30.0% | |
AATATTTGTGTTGCGTTTCA+GGG | - | tig0032775:23562-23581 | Msa1450060:intron | 30.0% | |
AGATGAATCATCATTGTTGT+TGG | + | tig0032775:23937-23956 | Msa1450060:intergenic | 30.0% | |
AACAACAATGATGATTCATC+TGG | - | tig0032775:23936-23955 | Msa1450060:intron | 30.0% | |
! | TGTTTCTGATAATTCAACTG+CGG | + | tig0032775:24060-24079 | Msa1450060:intergenic | 30.0% |
CTTATTCTTTGACACTGATA+TGG | + | tig0032775:24093-24112 | Msa1450060:intergenic | 30.0% | |
CATATCAGTGTCAAAGAATA+AGG | - | tig0032775:24091-24110 | Msa1450060:intron | 30.0% | |
GGATGATACTGACAATAAAA+AGG | - | tig0032775:24202-24221 | Msa1450060:intron | 30.0% | |
TGATACTGACAATAAAAAGG+AGG | - | tig0032775:24205-24224 | Msa1450060:intron | 30.0% | |
AGACAGAAAACTGCATAATA+AGG | - | tig0032775:24325-24344 | Msa1450060:intron | 30.0% | |
AAGAGAAAAATGATTCGCAT+CGG | - | tig0032775:24429-24448 | Msa1450060:intron | 30.0% | |
ATTGTATAGAAAGTTGTTGG+GGG | - | tig0032775:24522-24541 | Msa1450060:intron | 30.0% | |
CTTAATAACGAAAGTTGTTG+GGG | - | tig0032775:24573-24592 | Msa1450060:intron | 30.0% | |
TTAATAACGAAAGTTGTTGG+GGG | - | tig0032775:24574-24593 | Msa1450060:intron | 30.0% | |
GAAACAAAAAGGCAAATGAT+TGG | + | tig0032775:24663-24682 | Msa1450060:intergenic | 30.0% | |
GAAGAAGAAAAGAATGAATG+AGG | - | tig0032775:24810-24829 | Msa1450060:intron | 30.0% | |
TGAAGATTCATCTGAGAATA+TGG | - | tig0032775:24960-24979 | Msa1450060:intron | 30.0% | |
TTAAATTGCAGACTTAGTGT+TGG | - | tig0032775:25185-25204 | Msa1450060:intron | 30.0% | |
! | TCATATTAATTTGATGCTCG+TGG | + | tig0032775:25250-25269 | Msa1450060:intergenic | 30.0% |
TATGAAAGATATGATCGTCA+TGG | - | tig0032775:25265-25284 | Msa1450060:intron | 30.0% | |
ATGAAAGATATGATCGTCAT+GGG | - | tig0032775:25266-25285 | Msa1450060:intron | 30.0% | |
AAGACTATGCAATGCAATAA+TGG | - | tig0032775:25289-25308 | Msa1450060:intron | 30.0% | |
AGACTATGCAATGCAATAAT+GGG | - | tig0032775:25290-25309 | Msa1450060:intron | 30.0% | |
TAAGCAAGTGAATGTAAAGA+AGG | - | tig0032775:25478-25497 | Msa1450060:intron | 30.0% | |
! | AGTTTTCATATGCACTGTCA+AGG | - | tig0032775:19896-19915 | Msa1450060:three_prime_UTR | 35.0% |
TTGGGGAAGGATTAAAATGT+CGG | + | tig0032775:20006-20025 | Msa1450060:intergenic | 35.0% | |
GATCAGAGACATGTTGTATT+TGG | - | tig0032775:20152-20171 | Msa1450060:three_prime_UTR | 35.0% | |
TGTTGTATTTGGCCAAGTAT+TGG | - | tig0032775:20163-20182 | Msa1450060:three_prime_UTR | 35.0% | |
AGTTGGAGTTAGTACCATAT+TGG | - | tig0032775:20438-20457 | Msa1450060:intron | 35.0% | |
GTTGGAGTTAGTACCATATT+GGG | - | tig0032775:20439-20458 | Msa1450060:intron | 35.0% | |
! | GGATTTGAAATCTCCCAATA+TGG | + | tig0032775:20455-20474 | Msa1450060:intergenic | 35.0% |
GGAGATTTCAAATCCTACAT+GGG | - | tig0032775:20460-20479 | Msa1450060:intron | 35.0% | |
AAAGAAGGGTTTCTGCAATT+TGG | + | tig0032775:20506-20525 | Msa1450060:intergenic | 35.0% | |
! | GACTGTTTCTTAAATGTGGA+AGG | - | tig0032775:20552-20571 | Msa1450060:CDS | 35.0% |
!! | ACTTACAAAATCGGTTTGCA+AGG | + | tig0032775:20875-20894 | Msa1450060:intergenic | 35.0% |
TGAAAAAACCAAGTTCCACT+TGG | - | tig0032775:21010-21029 | Msa1450060:intron | 35.0% | |
! | GCATGTCTTTTTATCTCTTC+AGG | + | tig0032775:21147-21166 | Msa1450060:intergenic | 35.0% |
! | TGTGCCTTTCTCTCTTTTAT+TGG | - | tig0032775:21212-21231 | Msa1450060:CDS | 35.0% |
GGTTCCAATAAAAGAGAGAA+AGG | + | tig0032775:21219-21238 | Msa1450060:intergenic | 35.0% | |
ACACATGAAAATACGGTGTT+GGG | + | tig0032775:21285-21304 | Msa1450060:intergenic | 35.0% | |
TACACATGAAAATACGGTGT+TGG | + | tig0032775:21286-21305 | Msa1450060:intergenic | 35.0% | |
! | GTTTATCTAACTTGCACCTT+TGG | + | tig0032775:21458-21477 | Msa1450060:intergenic | 35.0% |
AGGTGCAAGTTAGATAAACT+TGG | - | tig0032775:21459-21478 | Msa1450060:CDS | 35.0% | |
TTCTACTCTACAGTACTACT+AGG | - | tig0032775:21549-21568 | Msa1450060:CDS | 35.0% | |
CAGCAAATAATGTACCAACA+TGG | - | tig0032775:21676-21695 | Msa1450060:CDS | 35.0% | |
TAATGTACCAACATGGTTGT+AGG | - | tig0032775:21683-21702 | Msa1450060:CDS | 35.0% | |
TGAAGAGCTTACCTCAAAAT+TGG | + | tig0032775:21716-21735 | Msa1450060:intergenic | 35.0% | |
CTCTTCAGTAAAATTCAACG+CGG | - | tig0032775:21729-21748 | Msa1450060:CDS | 35.0% | |
GTTAGGATGGATAACTTTGT+GGG | + | tig0032775:21857-21876 | Msa1450060:intergenic | 35.0% | |
TGTTAGGATGGATAACTTTG+TGG | + | tig0032775:21858-21877 | Msa1450060:intergenic | 35.0% | |
TTGTGTATCAAACACCTAAC+TGG | + | tig0032775:22220-22239 | Msa1450060:intergenic | 35.0% | |
GATACACAAGAAGCTGTAAA+AGG | - | tig0032775:22231-22250 | Msa1450060:intron | 35.0% | |
TACACAAGAAGCTGTAAAAG+GGG | - | tig0032775:22233-22252 | Msa1450060:intron | 35.0% | |
AAAGGCAAAGAGAAATCTTG+GGG | + | tig0032775:22309-22328 | Msa1450060:intergenic | 35.0% | |
GAAAGGCAAAGAGAAATCTT+GGG | + | tig0032775:22310-22329 | Msa1450060:intergenic | 35.0% | |
TGAAAGGCAAAGAGAAATCT+TGG | + | tig0032775:22311-22330 | Msa1450060:intergenic | 35.0% | |
AGATTTCTCTTTGCCTTTCA+TGG | - | tig0032775:22311-22330 | Msa1450060:intron | 35.0% | |
TGTGCATGTGCCATAAAATA+AGG | - | tig0032775:22483-22502 | Msa1450060:intron | 35.0% | |
GTGCATGTGCCATAAAATAA+GGG | - | tig0032775:22484-22503 | Msa1450060:intron | 35.0% | |
GCAAAATATACGCGAGATAT+GGG | + | tig0032775:22523-22542 | Msa1450060:intergenic | 35.0% | |
AGCAAAATATACGCGAGATA+TGG | + | tig0032775:22524-22543 | Msa1450060:intergenic | 35.0% | |
GCTATTACTAGTAGGCTATT+TGG | - | tig0032775:22695-22714 | Msa1450060:intron | 35.0% | |
!! | GTAGCTTTATGGAATGTGAT+CGG | - | tig0032775:22786-22805 | Msa1450060:intron | 35.0% |
AGGTAACTAAGATCAGTCAA+TGG | - | tig0032775:22925-22944 | Msa1450060:intron | 35.0% | |
TATATGCAGTTGAAGCAGTA+AGG | + | tig0032775:22973-22992 | Msa1450060:intergenic | 35.0% | |
!! | CTTAATTTGCAGCAGTTACT+TGG | - | tig0032775:23019-23038 | Msa1450060:intron | 35.0% |
GATGGATGCATAGAAAACTT+CGG | - | tig0032775:23041-23060 | Msa1450060:intron | 35.0% | |
TAGACATGCCTAGTTAAATC+TGG | + | tig0032775:23235-23254 | Msa1450060:intergenic | 35.0% | |
TTTACAGTGGGCAATACTTA+TGG | + | tig0032775:23331-23350 | Msa1450060:intergenic | 35.0% | |
! | TTTGTGAGCTAGTTTACAGT+GGG | + | tig0032775:23343-23362 | Msa1450060:intergenic | 35.0% |
! | TCTAGAATGATCAGAAGTCT+TGG | - | tig0032775:23461-23480 | Msa1450060:intron | 35.0% |
CTAACAAAGGATGTCTATGA+CGG | + | tig0032775:23538-23557 | Msa1450060:intergenic | 35.0% | |
! | ACTATCTGAAACCGAACTTT+GGG | - | tig0032775:23622-23641 | Msa1450060:intron | 35.0% |
AGAAAATCTTTCGAAGCAGT+TGG | - | tig0032775:23690-23709 | Msa1450060:intron | 35.0% | |
GAAAATCTTTCGAAGCAGTT+GGG | - | tig0032775:23691-23710 | Msa1450060:intron | 35.0% | |
! | ATGGAAAATGATGGTGTTAG+TGG | + | tig0032775:23819-23838 | Msa1450060:intergenic | 35.0% |
TCAACAGAGATGGAAAATGA+TGG | + | tig0032775:23828-23847 | Msa1450060:intergenic | 35.0% | |
TACTGACAATAAAAAGGAGG+AGG | - | tig0032775:24208-24227 | Msa1450060:intron | 35.0% | |
!!! | CTTTTTTCTCATGAGATGCA+TGG | + | tig0032775:24246-24265 | Msa1450060:intergenic | 35.0% |
AAGAAAAGAATGAATGAGGG+AGG | - | tig0032775:24814-24833 | Msa1450060:intron | 35.0% | |
ACTTTCAGTTCTATACACTG+TGG | - | tig0032775:25607-25626 | Msa1450060:five_prime_UTR | 35.0% | |
! | AACTGACTCCCATTAGTGTT+GGG | + | tig0032775:19880-19899 | None:intergenic | 40.0% |
! | AAACTGACTCCCATTAGTGT+TGG | + | tig0032775:19881-19900 | None:intergenic | 40.0% |
!!! | ACCCAAGCTTAGTGGATTTT+GGG | + | tig0032775:19963-19982 | Msa1450060:intergenic | 40.0% |
TCTAATAGACCCAAGCTTAG+TGG | + | tig0032775:19971-19990 | Msa1450060:intergenic | 40.0% | |
ATGCTCAACATTGGAACTTG+GGG | + | tig0032775:20023-20042 | Msa1450060:intergenic | 40.0% | |
GATGCTCAACATTGGAACTT+GGG | + | tig0032775:20024-20043 | Msa1450060:intergenic | 40.0% | |
AGATGCTCAACATTGGAACT+TGG | + | tig0032775:20025-20044 | Msa1450060:intergenic | 40.0% | |
!! | GTATTTGGCCAAGTATTGGA+AGG | - | tig0032775:20167-20186 | Msa1450060:three_prime_UTR | 40.0% |
!! | TGTTAGGTTGATTGAACCAC+AGG | - | tig0032775:20199-20218 | Msa1450060:three_prime_UTR | 40.0% |
AGATTGTGGTTATCAGTGAC+TGG | - | tig0032775:20226-20245 | Msa1450060:three_prime_UTR | 40.0% | |
! | CTCTTTATTTCTTGCTGCTG+AGG | - | tig0032775:20291-20310 | Msa1450060:CDS | 40.0% |
! | TTTATTTCTTGCTGCTGAGG+AGG | - | tig0032775:20294-20313 | Msa1450060:intron | 40.0% |
AGGAAGGTAGAGAACTCATT+TGG | + | tig0032775:20360-20379 | Msa1450060:intergenic | 40.0% | |
AATAGGTGGCAAGAGTTTGT+AGG | + | tig0032775:20399-20418 | Msa1450060:intergenic | 40.0% | |
GGGAGATTTCAAATCCTACA+TGG | - | tig0032775:20459-20478 | Msa1450060:intron | 40.0% | |
! | CTGCAATTTGGCTTAACTTG+AGG | + | tig0032775:20494-20513 | Msa1450060:intergenic | 40.0% |
! | CTAGCACTAGTCTGCAAAAT+TGG | - | tig0032775:20592-20611 | Msa1450060:CDS | 40.0% |
TTAAGCTGTCTTGTGGTACA+TGG | - | tig0032775:20737-20756 | Msa1450060:CDS | 40.0% | |
! | CTTTTGATCCAAGTGGAACT+TGG | + | tig0032775:21021-21040 | Msa1450060:intergenic | 40.0% |
CAGGGTATAAAGCTCATTTC+TGG | - | tig0032775:21816-21835 | Msa1450060:CDS | 40.0% | |
ATGGATAACTTTGTGGGTGT+GGG | + | tig0032775:21851-21870 | Msa1450060:intergenic | 40.0% | |
TGTTACATCCACAACCAGTT+AGG | - | tig0032775:22203-22222 | Msa1450060:intron | 40.0% | |
ATCAAACACCTAACTGGTTG+TGG | + | tig0032775:22214-22233 | Msa1450060:intergenic | 40.0% | |
ACACAAGAAGCTGTAAAAGG+GGG | - | tig0032775:22234-22253 | Msa1450060:intron | 40.0% | |
ATAATGTGACCATTCTCGTG+AGG | - | tig0032775:22264-22283 | Msa1450060:intron | 40.0% | |
TAATGTGACCATTCTCGTGA+GGG | - | tig0032775:22265-22284 | Msa1450060:intron | 40.0% | |
CTGAAGAAAACTTCCGTTGT+TGG | - | tig0032775:22375-22394 | Msa1450060:intron | 40.0% | |
!! | TTCGGTTTCTAGAATCTGAC+CGG | + | tig0032775:22549-22568 | Msa1450060:intergenic | 40.0% |
TGCAGCTTGACAAAACAGTA+AGG | + | tig0032775:22634-22653 | Msa1450060:intergenic | 40.0% | |
TTTGTCAAGCTGCACATGAT+CGG | - | tig0032775:22640-22659 | Msa1450060:intron | 40.0% | |
ACTAGTAATAGCTACCGTGT+GGG | + | tig0032775:22687-22706 | Msa1450060:intergenic | 40.0% | |
TACTAGTAATAGCTACCGTG+TGG | + | tig0032775:22688-22707 | Msa1450060:intergenic | 40.0% | |
ACACGGTAGCTATTACTAGT+AGG | - | tig0032775:22687-22706 | Msa1450060:intron | 40.0% | |
! | GACATAAGCAGGTAGCTTTA+TGG | - | tig0032775:22775-22794 | Msa1450060:intron | 40.0% |
ATTTGCAGCAGTTACTTGGA+TGG | - | tig0032775:23023-23042 | Msa1450060:intron | 40.0% | |
AAAATAGCTTACCAGTGACC+AGG | + | tig0032775:23093-23112 | Msa1450060:intergenic | 40.0% | |
! | GTTTGTGAGCTAGTTTACAG+TGG | + | tig0032775:23344-23363 | Msa1450060:intergenic | 40.0% |
! | CACTATCTGAAACCGAACTT+TGG | - | tig0032775:23621-23640 | Msa1450060:intron | 40.0% |
! | TATTTTCCGCTCCCAAAGTT+CGG | + | tig0032775:23636-23655 | Msa1450060:intergenic | 40.0% |
AGTAGACGAGGAAGAAGATA+AGG | - | tig0032775:23725-23744 | Msa1450060:intron | 40.0% | |
TTCCTAGCAATTGGAACTCT+TGG | - | tig0032775:23774-23793 | Msa1450060:intron | 40.0% | |
AACCAAGAGTTCCAATTGCT+AGG | + | tig0032775:23779-23798 | Msa1450060:intergenic | 40.0% | |
AGCAATTGGAACTCTTGGTT+TGG | - | tig0032775:23779-23798 | Msa1450060:intron | 40.0% | |
!! | TGGAACTCTTGGTTTGGAAT+CGG | - | tig0032775:23785-23804 | Msa1450060:intron | 40.0% |
! | AATGATGGTGTTAGTGGTGA+TGG | + | tig0032775:23813-23832 | Msa1450060:intergenic | 40.0% |
! | TCCATGACTATTTCTCTCTG+CGG | + | tig0032775:23982-24001 | Msa1450060:intergenic | 40.0% |
AAACTCCATTTGTCCACTTC+AGG | - | tig0032775:24019-24038 | Msa1450060:intron | 40.0% | |
AACTCCATTTGTCCACTTCA+GGG | - | tig0032775:24020-24039 | Msa1450060:intron | 40.0% | |
ATATCCCTGAAGTGGACAAA+TGG | + | tig0032775:24027-24046 | Msa1450060:intergenic | 40.0% | |
GAGATGCATGGCAGATTTAT+TGG | + | tig0032775:24234-24253 | Msa1450060:intergenic | 40.0% | |
AGTTGAATCAACAGAGGTCT+GGG | + | tig0032775:24300-24319 | Msa1450060:intergenic | 40.0% | |
AAGTTGAATCAACAGAGGTC+TGG | + | tig0032775:24301-24320 | Msa1450060:intergenic | 40.0% | |
TGCTGAAGTTGAATCAACAG+AGG | + | tig0032775:24306-24325 | Msa1450060:intergenic | 40.0% | |
TCCAAGATTCATGTGCAACT+TGG | - | tig0032775:24405-24424 | Msa1450060:intron | 40.0% | |
AGATTCTCCAGATGTTTCAC+CGG | - | tig0032775:24746-24765 | Msa1450060:intron | 40.0% | |
!! | GATTTTCAGGGTGAACTTTC+CGG | + | tig0032775:24768-24787 | Msa1450060:intergenic | 40.0% |
! | CTGCACATGTTGGATTTTCA+GGG | + | tig0032775:24780-24799 | Msa1450060:intergenic | 40.0% |
! | TCTGCACATGTTGGATTTTC+AGG | + | tig0032775:24781-24800 | Msa1450060:intergenic | 40.0% |
ATACAGCCAAAAAGAGCAGT+TGG | - | tig0032775:24877-24896 | Msa1450060:intron | 40.0% | |
! | TCCTTTCCAACTGCTCTTTT+TGG | + | tig0032775:24886-24905 | Msa1450060:intergenic | 40.0% |
GCAGTTGGAAAGGAAAACAT+AGG | - | tig0032775:24892-24911 | Msa1450060:intron | 40.0% | |
ACATCTATCTCACTCTGCAT+TGG | - | tig0032775:25032-25051 | Msa1450060:intron | 40.0% | |
GAAATGAAAACTCAAGCGCA+TGG | - | tig0032775:25142-25161 | Msa1450060:intron | 40.0% | |
!! | CTTAGTGTTGGAGCTCTAAA+AGG | - | tig0032775:25197-25216 | Msa1450060:intron | 40.0% |
!! | TTGGAGCTCTAAAAGGCAAA+GGG | - | tig0032775:25204-25223 | Msa1450060:intron | 40.0% |
!! | AAGAGTGTTAAGAGTCTGTC+CGG | - | tig0032775:25397-25416 | Msa1450060:intron | 40.0% |
CATCCTTGTGAAACCATATC+CGG | + | tig0032775:25419-25438 | Msa1450060:intergenic | 40.0% | |
TGCCCAAAATCCACTAAGCT+TGG | - | tig0032775:19958-19977 | Msa1450060:three_prime_UTR | 45.0% | |
GCCCAAAATCCACTAAGCTT+GGG | - | tig0032775:19959-19978 | Msa1450060:three_prime_UTR | 45.0% | |
!!! | GACCCAAGCTTAGTGGATTT+TGG | + | tig0032775:19964-19983 | Msa1450060:intergenic | 45.0% |
TCAACATTGGAACTTGGGGA+AGG | + | tig0032775:20019-20038 | Msa1450060:intergenic | 45.0% | |
TGTCCTTGCCTTCCAATACT+TGG | + | tig0032775:20178-20197 | Msa1450060:intergenic | 45.0% | |
TGGAAGGCAAGGACATTGTT+AGG | - | tig0032775:20183-20202 | Msa1450060:three_prime_UTR | 45.0% | |
TAACCACAATCTGTGTCCTG+TGG | + | tig0032775:20218-20237 | Msa1450060:intergenic | 45.0% | |
TGAGGATACTCTACCCATGT+AGG | + | tig0032775:20476-20495 | Msa1450060:intergenic | 45.0% | |
TGATGACTGCCGTTGATGTT+CGG | - | tig0032775:20619-20638 | Msa1450060:CDS | 45.0% | |
AGATGAACCCCGAACATCAA+CGG | + | tig0032775:20631-20650 | Msa1450060:intergenic | 45.0% | |
TTGGCATGAAACGGAAGAAG+AGG | + | tig0032775:20655-20674 | Msa1450060:intergenic | 45.0% | |
!! | TCAGGCTTTAAGCTGTCTTG+TGG | - | tig0032775:20730-20749 | Msa1450060:CDS | 45.0% |
ACGGTGATGCCCTTATTGAT+AGG | + | tig0032775:20938-20957 | Msa1450060:intergenic | 45.0% | |
ACGCTCAGCACTATTAGGTT+TGG | + | tig0032775:20978-20997 | Msa1450060:intergenic | 45.0% | |
TCTACAGTACTACTAGGTCC+AGG | - | tig0032775:21555-21574 | Msa1450060:CDS | 45.0% | |
CTACAGTACTACTAGGTCCA+GGG | - | tig0032775:21556-21575 | Msa1450060:CDS | 45.0% | |
TACAGTACTACTAGGTCCAG+GGG | - | tig0032775:21557-21576 | Msa1450060:CDS | 45.0% | |
CATATATTACCCGAATCCCC+TGG | + | tig0032775:21576-21595 | Msa1450060:intergenic | 45.0% | |
!! | ATTTGCAGCTAGTGGGTTTC+AGG | - | tig0032775:21797-21816 | Msa1450060:CDS | 45.0% |
!! | TTTGCAGCTAGTGGGTTTCA+GGG | - | tig0032775:21798-21817 | Msa1450060:CDS | 45.0% |
TGGATAACTTTGTGGGTGTG+GGG | + | tig0032775:21850-21869 | Msa1450060:intergenic | 45.0% | |
GATGGATAACTTTGTGGGTG+TGG | + | tig0032775:21852-21871 | Msa1450060:intergenic | 45.0% | |
AATGTGACCATTCTCGTGAG+GGG | - | tig0032775:22266-22285 | Msa1450060:intron | 45.0% | |
TTCTCTTTGCCTTTCATGGC+TGG | - | tig0032775:22315-22334 | Msa1450060:intron | 45.0% | |
TGGATATCACACGCCAACAA+CGG | + | tig0032775:22391-22410 | Msa1450060:intergenic | 45.0% | |
ATCCATTGCCTGAAGATTGC+TGG | - | tig0032775:22406-22425 | Msa1450060:CDS | 45.0% | |
TCTATCGGTGTGTATCACTG+TGG | - | tig0032775:22460-22479 | Msa1450060:intron | 45.0% | |
! | CTCGCGTATATTTTGCTTCC+CGG | - | tig0032775:22527-22546 | Msa1450060:intron | 45.0% |
!! | TCGGTTTCTAGAATCTGACC+GGG | + | tig0032775:22548-22567 | Msa1450060:intergenic | 45.0% |
CGGATAGGTGAAGATTGATC+AGG | - | tig0032775:22660-22679 | Msa1450060:intron | 45.0% | |
AAGATTGATCAGGACCCACA+CGG | - | tig0032775:22670-22689 | Msa1450060:intron | 45.0% | |
CACTGAACCTTTCAAAGACC+TGG | - | tig0032775:23072-23091 | Msa1450060:intron | 45.0% | |
ATGGACGGTGATATATGCGT+TGG | + | tig0032775:23312-23331 | Msa1450060:intergenic | 45.0% | |
CAGTGGGCAATACTTATGGA+CGG | + | tig0032775:23327-23346 | Msa1450060:intergenic | 45.0% | |
CCATGAACTCAAGTGGCATT+CGG | + | tig0032775:23507-23526 | Msa1450060:intergenic | 45.0% | |
! | ATGCCACTTGAGTTCATGGT+TGG | - | tig0032775:23508-23527 | Msa1450060:intron | 45.0% |
CAAAGGATGTCTATGACGGT+TGG | + | tig0032775:23534-23553 | Msa1450060:intergenic | 45.0% | |
AGACGAGGAAGAAGATAAGG+AGG | - | tig0032775:23728-23747 | Msa1450060:intron | 45.0% | |
AGGAAGAAGATAAGGAGGCA+TGG | - | tig0032775:23733-23752 | Msa1450060:intron | 45.0% | |
! | GGAAGAAGATAAGGAGGCAT+GGG | - | tig0032775:23734-23753 | Msa1450060:intron | 45.0% |
! | GAAGAAGATAAGGAGGCATG+GGG | - | tig0032775:23735-23754 | Msa1450060:intron | 45.0% |
AGTTCCAATTGCTAGGAAGC+CGG | + | tig0032775:23772-23791 | Msa1450060:intergenic | 45.0% | |
GATCAGCTTCAGCTCATTCT+CGG | + | tig0032775:23883-23902 | Msa1450060:intergenic | 45.0% | |
ACCGCAGAGAGAAATAGTCA+TGG | - | tig0032775:23978-23997 | Msa1450060:intron | 45.0% | |
CCAAAGAGATATCCCTGAAG+TGG | + | tig0032775:24035-24054 | Msa1450060:intergenic | 45.0% | |
CCACTTCAGGGATATCTCTT+TGG | - | tig0032775:24032-24051 | Msa1450060:intron | 45.0% | |
GAGAAGCAAACAAGCAGATC+AGG | - | tig0032775:24160-24179 | Msa1450060:intron | 45.0% | |
GCAGATCAGGACAATCTTGT+TGG | - | tig0032775:24173-24192 | Msa1450060:intron | 45.0% | |
GGACAATCTTGTTGGAGCAA+AGG | - | tig0032775:24181-24200 | Msa1450060:intron | 45.0% | |
GCCAAGTTGCACATGAATCT+TGG | + | tig0032775:24409-24428 | Msa1450060:intergenic | 45.0% | |
GAACTTTCCGGTGAAACATC+TGG | + | tig0032775:24756-24775 | Msa1450060:intergenic | 45.0% | |
TCGTACTTCTCTGCACATGT+TGG | + | tig0032775:24790-24809 | Msa1450060:intergenic | 45.0% | |
GCCAAAAAGAGCAGTTGGAA+AGG | - | tig0032775:24882-24901 | Msa1450060:intron | 45.0% | |
ACATAGGACAGTGCAAGAAG+AGG | - | tig0032775:24908-24927 | Msa1450060:intron | 45.0% | |
AGGCAACTCCAAATTACCCT+TGG | - | tig0032775:24928-24947 | Msa1450060:intron | 45.0% | |
CAACTCCAAATTACCCTTGG+CGG | - | tig0032775:24931-24950 | Msa1450060:intron | 45.0% | |
CATCTGAGAATATGGAGCAG+TGG | - | tig0032775:24968-24987 | Msa1450060:intron | 45.0% | |
GCAGTGGATCAAAACAGATG+TGG | - | tig0032775:24984-25003 | Msa1450060:intron | 45.0% | |
! | CAAGCGCATGGCTAAGATTT+TGG | - | tig0032775:25154-25173 | Msa1450060:intron | 45.0% |
!! | GTTGGAGCTCTAAAAGGCAA+AGG | - | tig0032775:25203-25222 | Msa1450060:intron | 45.0% |
TCTAAAAGGCAAAGGGCGAA+CGG | - | tig0032775:25211-25230 | Msa1450060:intron | 45.0% | |
GTTAAGAGTCTGTCCGGATA+TGG | - | tig0032775:25403-25422 | Msa1450060:intron | 45.0% | |
TGTCCGGATATGGTTTCACA+AGG | - | tig0032775:25413-25432 | Msa1450060:intron | 45.0% | |
ACATGTCTCTGATCCAGCCA+CGG | + | tig0032775:20146-20165 | Msa1450060:intergenic | 50.0% | |
!! | TGGCCAAGTATTGGAAGGCA+AGG | - | tig0032775:20172-20191 | Msa1450060:three_prime_UTR | 50.0% |
GAACCACAGGACACAGATTG+TGG | - | tig0032775:20212-20231 | Msa1450060:three_prime_UTR | 50.0% | |
GATGACTGCCGTTGATGTTC+GGG | - | tig0032775:20620-20639 | Msa1450060:CDS | 50.0% | |
ATGACTGCCGTTGATGTTCG+GGG | - | tig0032775:20621-20640 | Msa1450060:CDS | 50.0% | |
! | ACCTAATAGTGCTGAGCGTG+AGG | - | tig0032775:20979-20998 | Msa1450060:intron | 50.0% |
! | CCTAATAGTGCTGAGCGTGA+GGG | - | tig0032775:20980-20999 | Msa1450060:intron | 50.0% |
ACTACTAGGTCCAGGGGATT+CGG | - | tig0032775:21563-21582 | Msa1450060:CDS | 50.0% | |
ATGTGACCATTCTCGTGAGG+GGG | - | tig0032775:22267-22286 | Msa1450060:intron | 50.0% | |
CATGTACGACCAGTGACACA+TGG | + | tig0032775:22343-22362 | Msa1450060:intergenic | 50.0% | |
! | CATGTGTCACTGGTCGTACA+TGG | - | tig0032775:22341-22360 | Msa1450060:intron | 50.0% |
TGCCAGCAATCTTCAGGCAA+TGG | + | tig0032775:22411-22430 | Msa1450060:intergenic | 50.0% | |
CGTGTATGCCAGCAATCTTC+AGG | + | tig0032775:22417-22436 | Msa1450060:intergenic | 50.0% | |
CAAGCTGCACATGATCGGAT+AGG | - | tig0032775:22645-22664 | Msa1450060:intron | 50.0% | |
CCAGTGACCAGGTCTTTGAA+AGG | + | tig0032775:23082-23101 | Msa1450060:intergenic | 50.0% | |
CCTTTCAAAGACCTGGTCAC+TGG | - | tig0032775:23079-23098 | Msa1450060:intron | 50.0% | |
ATCAGAAGTCTTGGCGAGTG+AGG | - | tig0032775:23470-23489 | Msa1450060:intron | 50.0% | |
TCAGAAGTCTTGGCGAGTGA+GGG | - | tig0032775:23471-23490 | Msa1450060:intron | 50.0% | |
! | CCGAATGCCACTTGAGTTCA+TGG | - | tig0032775:23504-23523 | Msa1450060:intron | 50.0% |
TGGCCAACCATGAACTCAAG+TGG | + | tig0032775:23514-23533 | Msa1450060:intergenic | 50.0% | |
TTTGTGTTGCGTTTCAGGGC+AGG | - | tig0032775:23566-23585 | Msa1450060:intron | 50.0% | |
! | GCAGGCAACATCAGTTGATG+AGG | - | tig0032775:23584-23603 | Msa1450060:intron | 50.0% |
! | CTGAAACCGAACTTTGGGAG+CGG | - | tig0032775:23627-23646 | Msa1450060:intron | 50.0% |
TCTTTCGAAGCAGTTGGGAG+TGG | - | tig0032775:23696-23715 | Msa1450060:intron | 50.0% | |
TTCCAATTGCTAGGAAGCCG+GGG | + | tig0032775:23770-23789 | Msa1450060:intergenic | 50.0% | |
GTTCCAATTGCTAGGAAGCC+GGG | + | tig0032775:23771-23790 | Msa1450060:intergenic | 50.0% | |
TTCTCTCTGCGGTGCTTACA+TGG | + | tig0032775:23971-23990 | Msa1450060:intergenic | 50.0% | |
ACACAGCCAGAGAACAACAC+TGG | - | tig0032775:24124-24143 | Msa1450060:intron | 50.0% | |
CACAGCCAGAGAACAACACT+GGG | - | tig0032775:24125-24144 | Msa1450060:intron | 50.0% | |
! | AGAGGTCTGGGAAGAAGCAT+GGG | + | tig0032775:24288-24307 | Msa1450060:intergenic | 50.0% |
CCCTCACGCTCAGCACTATT+AGG | + | tig0032775:20983-21002 | Msa1450060:intergenic | 55.0% | |
CTACTAGGTCCAGGGGATTC+GGG | - | tig0032775:21564-21583 | Msa1450060:CDS | 55.0% | |
CACATGGCACCAGCCATGAA+AGG | + | tig0032775:22327-22346 | Msa1450060:intergenic | 55.0% | |
GAGTGGTAGAGCAGTAGACG+AGG | - | tig0032775:23713-23732 | Msa1450060:intron | 55.0% | |
! | GAAGATAAGGAGGCATGGGG+TGG | - | tig0032775:23738-23757 | Msa1450060:intron | 55.0% |
! | GCATGGGGTGGTATTTTCCC+CGG | - | tig0032775:23750-23769 | Msa1450060:intron | 55.0% |
TTCCCCGGCTTCCTAGCAAT+TGG | - | tig0032775:23765-23784 | Msa1450060:intron | 55.0% | |
! | GCTCACCCAGTGTTGTTCTC+TGG | + | tig0032775:24133-24152 | Msa1450060:intergenic | 55.0% |
! | GAGGTCTGGGAAGAAGCATG+GGG | + | tig0032775:24287-24306 | Msa1450060:intergenic | 55.0% |
CAGAGGTCTGGGAAGAAGCA+TGG | + | tig0032775:24289-24308 | Msa1450060:intergenic | 55.0% | |
CTCCAAATTACCCTTGGCGG+TGG | - | tig0032775:24934-24953 | Msa1450060:intron | 55.0% | |
TGCCACCGCCAAGGGTAATT+TGG | + | tig0032775:24939-24958 | Msa1450060:intergenic | 55.0% | |
ATCTTCACTGCCACCGCCAA+GGG | + | tig0032775:24947-24966 | Msa1450060:intergenic | 55.0% | |
AATCTTCACTGCCACCGCCA+AGG | + | tig0032775:24948-24967 | Msa1450060:intergenic | 55.0% | |
AGGCAAAGGGCGAACGGAAT+TGG | - | tig0032775:25217-25236 | Msa1450060:intron | 55.0% | |
GGCAAAGGGCGAACGGAATT+GGG | - | tig0032775:25218-25237 | Msa1450060:intron | 55.0% | |
GATGACATCGGCAGACACCG+TGG | - | tig0032775:20126-20145 | Msa1450060:three_prime_UTR | 60.0% | |
GCAGATCCCCCTCACGAGAA+TGG | + | tig0032775:22276-22295 | Msa1450060:intergenic | 60.0% | |
TCTCGTGAGGGGGATCTGCT+AGG | - | tig0032775:22277-22296 | Msa1450060:intron | 60.0% | |
!! | TGGCTGGTGCCATGTGTCAC+TGG | - | tig0032775:22331-22350 | Msa1450060:intron | 60.0% |
ACATCGGCAGACACCGTGGC+TGG | - | tig0032775:20130-20149 | Msa1450060:three_prime_UTR | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0032775 | gene | 19876 | 25630 | 19876 | ID=Msa1450060;Name=Msa1450060 |
tig0032775 | mRNA | 19876 | 25630 | 19876 | ID=Msa1450060-mRNA-1;Parent=Msa1450060;Name=Msa1450060-mRNA-1;_AED=0.13;_eAED=0.13;_QI=112|1|1|1|0.6|0.66|6|415|373 |
tig0032775 | exon | 19876 | 20310 | 19876 | ID=Msa1450060-mRNA-1:exon:17260;Parent=Msa1450060-mRNA-1 |
tig0032775 | exon | 20497 | 20758 | 20497 | ID=Msa1450060-mRNA-1:exon:17259;Parent=Msa1450060-mRNA-1 |
tig0032775 | exon | 21160 | 21923 | 21160 | ID=Msa1450060-mRNA-1:exon:17258;Parent=Msa1450060-mRNA-1 |
tig0032775 | exon | 22406 | 22475 | 22406 | ID=Msa1450060-mRNA-1:exon:17257;Parent=Msa1450060-mRNA-1 |
tig0032775 | exon | 22580 | 22655 | 22580 | ID=Msa1450060-mRNA-1:exon:17256;Parent=Msa1450060-mRNA-1 |
tig0032775 | exon | 25589 | 25630 | 25589 | ID=Msa1450060-mRNA-1:exon:17255;Parent=Msa1450060-mRNA-1 |
tig0032775 | five_prime_UTR | 25589 | 25630 | 25589 | ID=Msa1450060-mRNA-1:five_prime_utr;Parent=Msa1450060-mRNA-1 |
tig0032775 | five_prime_UTR | 22586 | 22655 | 22586 | ID=Msa1450060-mRNA-1:five_prime_utr;Parent=Msa1450060-mRNA-1 |
tig0032775 | CDS | 22580 | 22585 | 22580 | ID=Msa1450060-mRNA-1:cds;Parent=Msa1450060-mRNA-1 |
tig0032775 | CDS | 22406 | 22475 | 22406 | ID=Msa1450060-mRNA-1:cds;Parent=Msa1450060-mRNA-1 |
tig0032775 | CDS | 21160 | 21923 | 21160 | ID=Msa1450060-mRNA-1:cds;Parent=Msa1450060-mRNA-1 |
tig0032775 | CDS | 20497 | 20758 | 20497 | ID=Msa1450060-mRNA-1:cds;Parent=Msa1450060-mRNA-1 |
tig0032775 | CDS | 20291 | 20310 | 20291 | ID=Msa1450060-mRNA-1:cds;Parent=Msa1450060-mRNA-1 |
tig0032775 | three_prime_UTR | 19876 | 20290 | 19876 | ID=Msa1450060-mRNA-1:three_prime_utr;Parent=Msa1450060-mRNA-1 |
Gene Sequence |
Protein sequence |