Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422020 | XP_024635282.1 | 94.278 | 367 | 20 | 1 | 1 | 367 | 1 | 366 | 0.0 | 679 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422020 | sp|Q5XV40|LAZY1_ARATH | 33.858 | 381 | 206 | 14 | 3 | 367 | 2 | 352 | 4.01e-37 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422020 | G7JC25 | 93.973 | 365 | 21 | 1 | 3 | 367 | 2 | 365 | 0.0 | 673 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014570 | Msa0422020 | 0.809622 | 1.727516e-50 | -8.615850e-47 |
| Msa0230370 | Msa0422020 | 0.801169 | 1.021922e-48 | -8.615850e-47 |
| Msa0422020 | Msa0468250 | 0.802362 | 5.815654e-49 | -8.615850e-47 |
| Msa0422020 | Msa0468590 | 0.884175 | 2.399105e-71 | -8.615850e-47 |
| Msa0422020 | Msa0514470 | 0.892369 | 1.691892e-74 | -8.615850e-47 |
| Msa0422020 | Msa0757800 | 0.806400 | 8.378667e-50 | -8.615850e-47 |
| Msa0422020 | Msa0986510 | 0.803335 | 3.661710e-49 | -8.615850e-47 |
| Msa0422020 | Msa1008750 | 0.804801 | 1.814404e-49 | -8.615850e-47 |
| Msa0422020 | Msa1168550 | 0.810323 | 1.220281e-50 | -8.615850e-47 |
| Msa0422020 | Msa1168590 | 0.803471 | 3.432140e-49 | -8.615850e-47 |
| Msa0422020 | Msa1379590 | 0.800904 | 1.157714e-48 | -8.615850e-47 |
| Msa0422020 | Msa1424640 | 0.801096 | 1.057860e-48 | -8.615850e-47 |
| Msa0422020 | Msa1450060 | 0.908532 | 1.542531e-81 | -8.615850e-47 |
| Msa0277420 | Msa0422020 | 0.814202 | 1.736903e-51 | -8.615850e-47 |
| Msa0312530 | Msa0422020 | 0.817531 | 3.143025e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422020 | MtrunA17_Chr3g0122881 | 93.973 | 365 | 21 | 1 | 3 | 367 | 2 | 365 | 0.0 | 673 |
| Msa0422020 | MtrunA17_Chr7g0222391 | 43.237 | 414 | 146 | 20 | 4 | 367 | 3 | 377 | 8.34e-76 | 241 |
| Msa0422020 | MtrunA17_Chr7g0224731 | 35.079 | 382 | 184 | 13 | 3 | 367 | 2 | 336 | 4.01e-46 | 162 |
| Msa0422020 | MtrunA17_Chr7g0224671 | 29.384 | 422 | 205 | 18 | 1 | 383 | 17 | 384 | 2.18e-25 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0422020 | AT5G14090.1 | 33.858 | 381 | 206 | 14 | 3 | 367 | 2 | 352 | 4.08e-38 | 142 |
| Msa0422020 | AT5G14090.2 | 34.397 | 282 | 160 | 9 | 3 | 271 | 2 | 271 | 6.21e-28 | 112 |
Find 111 sgRNAs with CRISPR-Local
Find 368 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAAATAAGATTCGGTTTA+TGG | 0.065232 | 3_2:+71099882 | Msa0422020:three_prime_UTR |
| GAGATGCATGGCAGATTTAT+TGG | 0.247230 | 3_2:-71098641 | None:intergenic |
| TGCCACCGCCAAGGGTAATT+TGG | 0.255351 | 3_2:-71099313 | None:intergenic |
| CTTATTCTTTGACACTGATA+TGG | 0.261165 | 3_2:-71098500 | None:intergenic |
| CCACTTCAGGGATATCTCTT+TGG | 0.265174 | 3_2:+71098442 | Msa0422020:CDS |
| CATATCAGTGTCAAAGAATA+AGG | 0.288207 | 3_2:+71098501 | Msa0422020:CDS |
| AGGCAAAGGGCGAACGGAAT+TGG | 0.300171 | 3_2:+71099592 | Msa0422020:CDS |
| AAGACTATGCAATGCAATAA+TGG | 0.301066 | 3_2:+71099664 | Msa0422020:CDS |
| TGAAGATTCATCTGAGAATA+TGG | 0.319257 | 3_2:+71099337 | Msa0422020:CDS |
| CTTAGTGTTGGAGCTCTAAA+AGG | 0.331716 | 3_2:+71099572 | Msa0422020:CDS |
| GTTAAGAGTCTGTCCGGATA+TGG | 0.336650 | 3_2:+71099778 | Msa0422020:three_prime_UTR |
| TTCTCTCTGCGGTGCTTACA+TGG | 0.339766 | 3_2:-71098378 | None:intergenic |
| GAACTTTCCGGTGAAATATC+TGG | 0.341905 | 3_2:-71099130 | None:intergenic |
| TGTCTTTAGTTAATTATTTG+AGG | 0.346140 | 3_2:+71099740 | Msa0422020:three_prime_UTR |
| AGACAGAAAACTGCATAATA+AGG | 0.354735 | 3_2:+71098735 | Msa0422020:CDS |
| CTTAATTTGCAGCAGTTACT+TGG | 0.355697 | 3_2:+71097430 | Msa0422020:intron |
| GGATGATACTGACAATAAAA+AGG | 0.366676 | 3_2:+71098612 | Msa0422020:CDS |
| AAACTCCATTTGTCCACTTC+AGG | 0.368249 | 3_2:+71098429 | Msa0422020:CDS |
| TTCCTAGCAATTGGAACTCT+TGG | 0.378228 | 3_2:+71098184 | Msa0422020:CDS |
| AGCAATTGGAACTCTTGGTT+TGG | 0.393170 | 3_2:+71098189 | Msa0422020:CDS |
| CACTATCTGAAACCGAACTT+TGG | 0.396952 | 3_2:+71098031 | Msa0422020:CDS |
| GATCAGCTTCAGCTCATTCT+CGG | 0.397412 | 3_2:-71098290 | None:intergenic |
| AATGCTGGTCCCAACACTAA+TGG | 0.397418 | 3_2:+71094274 | None:intergenic |
| TTCCCCGGCTTCCTAGCAAT+TGG | 0.406570 | 3_2:+71098175 | Msa0422020:CDS |
| GGCAAAGGGCGAACGGAATT+GGG | 0.408082 | 3_2:+71099593 | Msa0422020:CDS |
| GAGAAGCAAACAAGCAGATC+AGG | 0.413070 | 3_2:+71098570 | Msa0422020:CDS |
| AAGTTGAATCAACAGAGGTC+TGG | 0.422480 | 3_2:-71098708 | None:intergenic |
| GAAACAATTAAAATAAGATT+CGG | 0.422974 | 3_2:+71099875 | Msa0422020:three_prime_UTR |
| TGGAACTCTTGGTTTGGAAT+CGG | 0.430619 | 3_2:+71098195 | Msa0422020:CDS |
| ACTATCTGAAACCGAACTTT+GGG | 0.435339 | 3_2:+71098032 | Msa0422020:CDS |
| AGACTATGCAATGCAATAAT+GGG | 0.436065 | 3_2:+71099665 | Msa0422020:CDS |
| ATGTATAATGTTCAAGAGTA+AGG | 0.437950 | 3_2:+71099924 | Msa0422020:three_prime_UTR |
| ATGCTGGTCCCAACACTAAT+GGG | 0.440075 | 3_2:+71094275 | None:intergenic |
| GCAGATCAGGACAATCTTGT+TGG | 0.449301 | 3_2:+71098583 | Msa0422020:CDS |
| AACTCCATTTGTCCACTTCA+GGG | 0.453747 | 3_2:+71098430 | Msa0422020:CDS |
| GAAGAAGAAAAGAATGAATG+AGG | 0.455837 | 3_2:+71099187 | Msa0422020:CDS |
| GCTCACCCAGTGTTGTTCTC+TGG | 0.456925 | 3_2:-71098540 | None:intergenic |
| AATGATGGTGTTAGTGGTGA+TGG | 0.457780 | 3_2:-71098220 | None:intergenic |
| GTTCCAATTGCTAGGAAGCC+GGG | 0.462497 | 3_2:-71098178 | None:intergenic |
| AGAAAATCTTTCGAAGCAGT+TGG | 0.467282 | 3_2:+71098100 | Msa0422020:CDS |
| TGAGAATATAATAACTGAAA+AGG | 0.468108 | 3_2:+71098255 | Msa0422020:CDS |
| AACAACAATGATGATTCATC+TGG | 0.470245 | 3_2:+71098346 | Msa0422020:CDS |
| GAAAATCTTTCGAAGCAGTT+GGG | 0.473047 | 3_2:+71098101 | Msa0422020:CDS |
| AGATGAATCATCATTGTTGT+TGG | 0.478539 | 3_2:-71098344 | None:intergenic |
| ATGGAAAATGATGGTGTTAG+TGG | 0.481586 | 3_2:-71098226 | None:intergenic |
| AACTGACTCCCATTAGTGTT+GGG | 0.488895 | 3_2:-71094283 | None:intergenic |
| TAAGCAAGTGAATGTAAAGA+AGG | 0.489282 | 3_2:+71099853 | Msa0422020:three_prime_UTR |
| ATATCCCTGAAGTGGACAAA+TGG | 0.494244 | 3_2:-71098434 | None:intergenic |
| AACTAAAGACACAAAACATA+AGG | 0.499571 | 3_2:-71099728 | None:intergenic |
| TCATATTAATTTGATGCTCG+TGG | 0.500786 | 3_2:-71099622 | None:intergenic |
| AGTTGAATCAACAGAGGTCT+GGG | 0.504381 | 3_2:-71098707 | None:intergenic |
| AAGAGTGTTAAGAGTCTGTC+CGG | 0.508459 | 3_2:+71099772 | Msa0422020:three_prime_UTR |
| TTAAATTGCAGACTTAGTGT+TGG | 0.509625 | 3_2:+71099560 | Msa0422020:intron |
| CATCCTTGTGAAACCATATC+CGG | 0.509628 | 3_2:-71099791 | None:intergenic |
| GGAAGAAGATAAGGAGGCAT+GGG | 0.511093 | 3_2:+71098144 | Msa0422020:CDS |
| CTTTCAGTTCTATACACTGT+GGG | 0.515729 | 3_2:+71099985 | Msa0422020:three_prime_UTR |
| ATTTGCAGCAGTTACTTGGA+TGG | 0.516221 | 3_2:+71097434 | Msa0422020:intron |
| AAGAAGAAAAGAATGAATGA+GGG | 0.517369 | 3_2:+71099188 | Msa0422020:CDS |
| AGTAGACGAGGAAGAAGATA+AGG | 0.519096 | 3_2:+71098135 | Msa0422020:CDS |
| AGTTCCAATTGCTAGGAAGC+CGG | 0.522924 | 3_2:-71098179 | None:intergenic |
| CAAAAGTAATAAAGTTGAAG+AGG | 0.525680 | 3_2:+71099220 | Msa0422020:CDS |
| AGAGGTCTGGGAAGAAGCAT+GGG | 0.527489 | 3_2:-71098695 | None:intergenic |
| CAGAGGTCTGGGAAGAAGCA+TGG | 0.527966 | 3_2:-71098696 | None:intergenic |
| CAACTCCAAATTACCCTTGG+CGG | 0.530405 | 3_2:+71099308 | Msa0422020:CDS |
| CACTGAACCTTTCAAAGACC+TGG | 0.535667 | 3_2:+71097483 | Msa0422020:CDS |
| ATCTTCACTGCCACCGCCAA+GGG | 0.536347 | 3_2:-71099321 | None:intergenic |
| TATGAAAGATATGATCGTCA+TGG | 0.538059 | 3_2:+71099640 | Msa0422020:CDS |
| TATTATATTCTCAACAGAGA+TGG | 0.542260 | 3_2:-71098245 | None:intergenic |
| GGACAATCTTGTTGGAGCAA+AGG | 0.550435 | 3_2:+71098591 | Msa0422020:CDS |
| TCTTTCGAAGCAGTTGGGAG+TGG | 0.552062 | 3_2:+71098106 | Msa0422020:CDS |
| AATCTTCACTGCCACCGCCA+AGG | 0.558247 | 3_2:-71099322 | None:intergenic |
| CCTTTCAAAGACCTGGTCAC+TGG | 0.558420 | 3_2:+71097490 | Msa0422020:CDS |
| AAACTGACTCCCATTAGTGT+TGG | 0.558780 | 3_2:-71094284 | None:intergenic |
| TCGTACTTCTCTGCACATGT+TGG | 0.562643 | 3_2:-71099164 | None:intergenic |
| CCAGTGACCAGGTCTTTGAA+AGG | 0.563072 | 3_2:-71097490 | None:intergenic |
| ACATCTATCTCACTCTGCAT+TGG | 0.563090 | 3_2:+71099407 | Msa0422020:CDS |
| ATGAAAGATATGATCGTCAT+GGG | 0.567897 | 3_2:+71099641 | Msa0422020:CDS |
| AGGAAGAAGATAAGGAGGCA+TGG | 0.571385 | 3_2:+71098143 | Msa0422020:CDS |
| CTCCAAATTACCCTTGGCGG+TGG | 0.573132 | 3_2:+71099311 | Msa0422020:CDS |
| CCAAAGAGATATCCCTGAAG+TGG | 0.575875 | 3_2:-71098442 | None:intergenic |
| GAAGATAAGGAGGCATGGGG+TGG | 0.581558 | 3_2:+71098148 | Msa0422020:CDS |
| AGATTCTCCAGATATTTCAC+CGG | 0.584446 | 3_2:+71099123 | Msa0422020:intron |
| TCAACAGAGATGGAAAATGA+TGG | 0.585903 | 3_2:-71098235 | None:intergenic |
| AGGCAACTCCAAATTACCCT+TGG | 0.588508 | 3_2:+71099305 | Msa0422020:CDS |
| TTGGAGCTCTAAAAGGCAAA+GGG | 0.588657 | 3_2:+71099579 | Msa0422020:CDS |
| ATAACACTATCAAAGAATGA+AGG | 0.592308 | 3_2:+71097316 | Msa0422020:exon |
| TCTAAAAGGCAAAGGGCGAA+CGG | 0.593553 | 3_2:+71099586 | Msa0422020:CDS |
| GCAGTTGGAAAGGAAAACAT+AGG | 0.595191 | 3_2:+71099269 | Msa0422020:CDS |
| CACAGCCAGAGAACAACACT+GGG | 0.596125 | 3_2:+71098535 | Msa0422020:CDS |
| GTTGGAGCTCTAAAAGGCAA+AGG | 0.599355 | 3_2:+71099578 | Msa0422020:CDS |
| ACACAGCCAGAGAACAACAC+TGG | 0.600693 | 3_2:+71098534 | Msa0422020:CDS |
| AGACGAGGAAGAAGATAAGG+AGG | 0.605480 | 3_2:+71098138 | Msa0422020:CDS |
| GATGGATGCATAGAAAACTT+CGG | 0.607420 | 3_2:+71097452 | Msa0422020:CDS |
| CTGAAACCGAACTTTGGGAG+CGG | 0.608233 | 3_2:+71098037 | Msa0422020:CDS |
| CATCTGAGAATATGGAGCAG+TGG | 0.617126 | 3_2:+71099345 | Msa0422020:CDS |
| GCAGGCAACATCAGTTGATG+AGG | 0.617201 | 3_2:+71097994 | Msa0422020:CDS |
| AACCAAGAGTTCCAATTGCT+AGG | 0.618323 | 3_2:-71098186 | None:intergenic |
| AAAATAGCTTACCAGTGACC+AGG | 0.620578 | 3_2:-71097501 | None:intergenic |
| TTCCAATTGCTAGGAAGCCG+GGG | 0.628342 | 3_2:-71098177 | None:intergenic |
| GCAGTGGATCAAAACAGATG+TGG | 0.633740 | 3_2:+71099361 | Msa0422020:CDS |
| ACATAGGACAGTGCAAGAAG+AGG | 0.639282 | 3_2:+71099285 | Msa0422020:CDS |
| TGTTTCTGATAATTCAACTG+CGG | 0.657633 | 3_2:-71098467 | None:intergenic |
| GAGTGGTAGAGCAGTAGACG+AGG | 0.660218 | 3_2:+71098123 | Msa0422020:CDS |
| TCCATGACTATTTCTCTCTG+CGG | 0.668096 | 3_2:-71098389 | None:intergenic |
| AAGAAAAGAATGAATGAGGG+AGG | 0.670784 | 3_2:+71099191 | Msa0422020:CDS |
| TGCTGAAGTTGAATCAACAG+AGG | 0.671518 | 3_2:-71098713 | None:intergenic |
| ACTTTCAGTTCTATACACTG+TGG | 0.672237 | 3_2:+71099984 | Msa0422020:three_prime_UTR |
| TGTCCGGATATGGTTTCACA+AGG | 0.673692 | 3_2:+71099788 | Msa0422020:three_prime_UTR |
| ACCGCAGAGAGAAATAGTCA+TGG | 0.693609 | 3_2:+71098388 | Msa0422020:CDS |
| GAGGTCTGGGAAGAAGCATG+GGG | 0.705384 | 3_2:-71098694 | None:intergenic |
| GAAGAAGATAAGGAGGCATG+GGG | 0.707091 | 3_2:+71098145 | Msa0422020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAATCAAAAGAAAAAA+GGG | - | chr3_2:71096315-71096334 | None:intergenic | 10.0% |
| !! | ATTAAAAATCAAAAGAAAAA+AGG | - | chr3_2:71096316-71096335 | None:intergenic | 10.0% |
| !!! | CAAATTTTTTTTTATACTTT+TGG | - | chr3_2:71096365-71096384 | None:intergenic | 10.0% |
| !! | AATATATATTATCTTCTTAA+TGG | - | chr3_2:71097780-71097799 | None:intergenic | 10.0% |
| !! | ATTTCTACTATTATACAAAT+AGG | - | chr3_2:71094822-71094841 | None:intergenic | 15.0% |
| !! | TATAATAGTAGAAATATAGT+TGG | + | chr3_2:71094827-71094846 | Msa0422020:intron | 15.0% |
| !! | TCTTAAAATATTTGAAAGAA+GGG | - | chr3_2:71094926-71094945 | None:intergenic | 15.0% |
| !! | ATCTTAAAATATTTGAAAGA+AGG | - | chr3_2:71094927-71094946 | None:intergenic | 15.0% |
| !! | ATAACTTATACTTACAAAAT+CGG | - | chr3_2:71095290-71095309 | None:intergenic | 15.0% |
| !! | CTTTAGGTAAAAAAAAAAAA+AGG | + | chr3_2:71095515-71095534 | Msa0422020:intron | 15.0% |
| !! | AAATCATTTATGTTATCTAT+TGG | - | chr3_2:71095654-71095673 | None:intergenic | 15.0% |
| !! | ATAGATAACATAAATGATTT+AGG | + | chr3_2:71095654-71095673 | Msa0422020:intron | 15.0% |
| !!! | TTTTTTATAATTTGTTAGGA+TGG | - | chr3_2:71096281-71096300 | None:intergenic | 15.0% |
| !!! | TGGATTTTTTATAATTTGTT+AGG | - | chr3_2:71096285-71096304 | None:intergenic | 15.0% |
| !! | AAATTTGATTATAGTAAACT+TGG | - | chr3_2:71096400-71096419 | None:intergenic | 15.0% |
| !!! | ACTAAGCAAAATATATTTTA+TGG | - | chr3_2:71097852-71097871 | None:intergenic | 15.0% |
| !! | ACAAATATTATAACTAACAA+AGG | - | chr3_2:71097961-71097980 | None:intergenic | 15.0% |
| !! | TTCCAATTAGTATTTATTTA+AGG | + | chr3_2:71099057-71099076 | Msa0422020:intron | 15.0% |
| !! | TAACTATATTAATTAATCTG+TGG | + | chr3_2:71099095-71099114 | Msa0422020:intron | 15.0% |
| !! | AACTATATTAATTAATCTGT+GGG | + | chr3_2:71099096-71099115 | Msa0422020:intron | 15.0% |
| !! | GAAACAATTAAAATAAGATT+CGG | + | chr3_2:71099875-71099894 | Msa0422020:three_prime_UTR | 15.0% |
| !! | ACCATATTAAAGTTTGTATT+GGG | - | chr3_2:71095314-71095333 | None:intergenic | 20.0% |
| !! | TACCATATTAAAGTTTGTAT+TGG | - | chr3_2:71095315-71095334 | None:intergenic | 20.0% |
| !! | AAAAATGTCAACATAACTTT+AGG | + | chr3_2:71095499-71095518 | Msa0422020:intron | 20.0% |
| !! | AGACATGCAAAATAAAATAA+TGG | + | chr3_2:71095569-71095588 | Msa0422020:intron | 20.0% |
| !!! | GTATATTTTTTTTCTTTGGT+TGG | - | chr3_2:71095782-71095801 | None:intergenic | 20.0% |
| !!! | ATCGGTATATTTTTTTTCTT+TGG | - | chr3_2:71095786-71095805 | None:intergenic | 20.0% |
| !! | ATTTGATGTCAAACATTAAT+CGG | - | chr3_2:71095804-71095823 | None:intergenic | 20.0% |
| !! | TATTTAGAAAATGAAAGAAC+TGG | + | chr3_2:71095910-71095929 | Msa0422020:intron | 20.0% |
| !! | TGTTTACCAAAAAATCATAA+CGG | + | chr3_2:71096483-71096502 | Msa0422020:intron | 20.0% |
| !!! | AAAGAATTTCCCTTATTTTA+TGG | - | chr3_2:71096908-71096927 | None:intergenic | 20.0% |
| !! | TGTTGACATATAATAAACAA+TGG | + | chr3_2:71097131-71097150 | Msa0422020:intron | 20.0% |
| !!! | ATTAATTCATTGTCTACTTT+TGG | - | chr3_2:71097624-71097643 | None:intergenic | 20.0% |
| !! | CTAATTCATTTCTATCAATT+TGG | - | chr3_2:71097807-71097826 | None:intergenic | 20.0% |
| !! | TGAGAATATAATAACTGAAA+AGG | + | chr3_2:71098255-71098274 | Msa0422020:CDS | 20.0% |
| !! | TTGATTAATCTTTATAAGAG+TGG | + | chr3_2:71098885-71098904 | Msa0422020:intron | 20.0% |
| !! | TAATTGTATAGAAAGTTGTT+GGG | + | chr3_2:71098930-71098949 | Msa0422020:intron | 20.0% |
| !! | AATACTAATTGGAAACAAAA+AGG | - | chr3_2:71099051-71099070 | None:intergenic | 20.0% |
| !! | GACCTTAAATAAATACTAAT+TGG | - | chr3_2:71099062-71099081 | None:intergenic | 20.0% |
| !! | TGTCTTTAGTTAATTATTTG+AGG | + | chr3_2:71099740-71099759 | Msa0422020:three_prime_UTR | 20.0% |
| !!! | TTAAAATAAGATTCGGTTTA+TGG | + | chr3_2:71099882-71099901 | Msa0422020:three_prime_UTR | 20.0% |
| !! | AGTTTCAATTGATTGATAAC+TGG | + | chr3_2:71094454-71094473 | Msa0422020:intron | 25.0% |
| ! | TCATAGTATGAAAATAAGGA+AGG | - | chr3_2:71094782-71094801 | None:intergenic | 25.0% |
| ! | TAGGTCATAGTATGAAAATA+AGG | - | chr3_2:71094786-71094805 | None:intergenic | 25.0% |
| ! | TCTACTATTATACAAATAGG+TGG | - | chr3_2:71094819-71094838 | None:intergenic | 25.0% |
| ! | ACATTTAAGAAACAGTCAAA+TGG | - | chr3_2:71094955-71094974 | None:intergenic | 25.0% |
| !! | ATTTGACTGTTTCTTAAATG+TGG | + | chr3_2:71094954-71094973 | Msa0422020:intron | 25.0% |
| ! | ATTATTTGATGAATGATGTC+AGG | + | chr3_2:71095118-71095137 | Msa0422020:intron | 25.0% |
| ! | GTATTAGAACCTATCAATAA+GGG | + | chr3_2:71095332-71095351 | Msa0422020:intron | 25.0% |
| !! | ATTATATCTTTTGATCCAAG+TGG | - | chr3_2:71095434-71095453 | None:intergenic | 25.0% |
| ! | CATTTATGTTATCTATTGGA+CGG | - | chr3_2:71095650-71095669 | None:intergenic | 25.0% |
| ! | TTGGAATACACATGAAAATA+CGG | - | chr3_2:71095702-71095721 | None:intergenic | 25.0% |
| !! | TTACTATTGATGGTTGATAT+TGG | - | chr3_2:71095721-71095740 | None:intergenic | 25.0% |
| ! | ATATCAACCATCAATAGTAA+AGG | + | chr3_2:71095721-71095740 | Msa0422020:intron | 25.0% |
| !!! | AAGTTAGTTTTTTTGACCAA+AGG | + | chr3_2:71095850-71095869 | Msa0422020:intron | 25.0% |
| ! | AGTTAGATAAACTTGGAATA+TGG | + | chr3_2:71095877-71095896 | Msa0422020:intron | 25.0% |
| ! | GTTAGATAAACTTGGAATAT+GGG | + | chr3_2:71095878-71095897 | Msa0422020:intron | 25.0% |
| !!! | GCTTTTTTGTATGTTTGTTT+TGG | + | chr3_2:71095932-71095951 | Msa0422020:intron | 25.0% |
| ! | AATAAAGTTAAGTGACATGT+TGG | + | chr3_2:71096030-71096049 | Msa0422020:intron | 25.0% |
| !! | TAGGTATAAAACCAATTTTG+AGG | + | chr3_2:71096113-71096132 | Msa0422020:intron | 25.0% |
| ! | AAAGAAAAAAGGGTAAAAGT+TGG | - | chr3_2:71096305-71096324 | None:intergenic | 25.0% |
| ! | TGTCTTCAATACTGAAAAAT+TGG | + | chr3_2:71096455-71096474 | Msa0422020:intron | 25.0% |
| !!! | ATAGAACCGTTATGATTTTT+TGG | - | chr3_2:71096492-71096511 | None:intergenic | 25.0% |
| ! | AATTATACACACATCTCTAT+CGG | + | chr3_2:71096857-71096876 | Msa0422020:intron | 25.0% |
| ! | TCATCATGAGCAAAATTATA+AGG | + | chr3_2:71097017-71097036 | Msa0422020:intron | 25.0% |
| ! | ATAATCTATATAAGAGGAGA+AGG | - | chr3_2:71097248-71097267 | None:intergenic | 25.0% |
| ! | GTGATGATAATCTATATAAG+AGG | - | chr3_2:71097254-71097273 | None:intergenic | 25.0% |
| ! | ATAACACTATCAAAGAATGA+AGG | + | chr3_2:71097316-71097335 | Msa0422020:exon | 25.0% |
| !! | TATATATGTTTGATAGCTGT+TGG | + | chr3_2:71097555-71097574 | Msa0422020:intron | 25.0% |
| ! | AATTAATGCCAGATTTAACT+AGG | + | chr3_2:71097637-71097656 | Msa0422020:intron | 25.0% |
| ! | TATTATATTCTCAACAGAGA+TGG | - | chr3_2:71098248-71098267 | None:intergenic | 25.0% |
| ! | GAAAAAAGCTCAAGAAAAAA+AGG | + | chr3_2:71098668-71098687 | Msa0422020:CDS | 25.0% |
| ! | ATTAATCTTTATAAGAGTGG+TGG | + | chr3_2:71098888-71098907 | Msa0422020:intron | 25.0% |
| ! | GTAATTGTATAGAAAGTTGT+TGG | + | chr3_2:71098929-71098948 | Msa0422020:intron | 25.0% |
| ! | AATTGTATAGAAAGTTGTTG+GGG | + | chr3_2:71098931-71098950 | Msa0422020:intron | 25.0% |
| ! | ATATAGTTAGCTAAAGTCTA+GGG | - | chr3_2:71099084-71099103 | None:intergenic | 25.0% |
| ! | AATATAGTTAGCTAAAGTCT+AGG | - | chr3_2:71099085-71099104 | None:intergenic | 25.0% |
| ! | AAGAAGAAAAGAATGAATGA+GGG | + | chr3_2:71099188-71099207 | Msa0422020:CDS | 25.0% |
| !!! | CAACTTTATTACTTTTGTTG+TGG | - | chr3_2:71099217-71099236 | None:intergenic | 25.0% |
| ! | CAAAAGTAATAAAGTTGAAG+AGG | + | chr3_2:71099220-71099239 | Msa0422020:CDS | 25.0% |
| ! | AACTAAAGACACAAAACATA+AGG | - | chr3_2:71099731-71099750 | None:intergenic | 25.0% |
| ! | ATGTATAATGTTCAAGAGTA+AGG | + | chr3_2:71099924-71099943 | Msa0422020:three_prime_UTR | 25.0% |
| AACTAAAAGATGCTCAACAT+TGG | - | chr3_2:71094438-71094457 | None:intergenic | 30.0% | |
| TCAAAAATCGAGCATCTTAT+AGG | - | chr3_2:71094493-71094512 | None:intergenic | 30.0% | |
| ATAAACTTGTCTGATGACAT+CGG | + | chr3_2:71094520-71094539 | Msa0422020:intron | 30.0% | |
| AACAAAACATGTCAAGCAAA+TGG | - | chr3_2:71094665-71094684 | None:intergenic | 30.0% | |
| !!! | TGACATGTTTTGTTTTCTCA+TGG | + | chr3_2:71094671-71094690 | Msa0422020:intron | 30.0% |
| AAACAAAAATTTGAGAGAGC+AGG | - | chr3_2:71094736-71094755 | None:intergenic | 30.0% | |
| ! | AGTTTTTCTTTGGCATGAAA+CGG | - | chr3_2:71095070-71095089 | None:intergenic | 30.0% |
| ! | TGAAGTTCGAAGTTTTTCTT+TGG | - | chr3_2:71095080-71095099 | None:intergenic | 30.0% |
| GCCCAATACAAACTTTAATA+TGG | + | chr3_2:71095310-71095329 | Msa0422020:intron | 30.0% | |
| GGTATTAGAACCTATCAATA+AGG | + | chr3_2:71095331-71095350 | Msa0422020:intron | 30.0% | |
| GGTGCTTGTATATGTATAAA+CGG | - | chr3_2:71095363-71095382 | None:intergenic | 30.0% | |
| TATTCAAGAATGAGACAACA+TGG | + | chr3_2:71095463-71095482 | Msa0422020:intron | 30.0% | |
| ACTTTGACCTTTACTATTGA+TGG | - | chr3_2:71095731-71095750 | None:intergenic | 30.0% | |
| ! | AAAAAACTAACTTGCACTTG+TGG | - | chr3_2:71095843-71095862 | None:intergenic | 30.0% |
| !!! | AGTGACATGTTGGTTTTTTT+AGG | + | chr3_2:71096040-71096059 | Msa0422020:intron | 30.0% |
| !!! | GTGACATGTTGGTTTTTTTA+GGG | + | chr3_2:71096041-71096060 | Msa0422020:intron | 30.0% |
| ! | TTTTATACCTACAACCATGT+TGG | - | chr3_2:71096104-71096123 | None:intergenic | 30.0% |
| AATAAACAATTTGCAGCTAG+TGG | + | chr3_2:71096200-71096219 | Msa0422020:intron | 30.0% | |
| ATAAACAATTTGCAGCTAGT+GGG | + | chr3_2:71096201-71096220 | Msa0422020:intron | 30.0% | |
| ! | AGAACTTGCTTCAAGTTTAT+CGG | - | chr3_2:71096428-71096447 | None:intergenic | 30.0% |
| ! | TTCAGTATTGAAGACAGAAT+CGG | - | chr3_2:71096451-71096470 | None:intergenic | 30.0% |
| TTTGTGCAATAGATATAGAG+AGG | + | chr3_2:71096548-71096567 | Msa0422020:intron | 30.0% | |
| ATACACAAGAAGCTGTAAAA+GGG | + | chr3_2:71096644-71096663 | Msa0422020:intron | 30.0% | |
| AGATGTGTGTATAATTCGAT+TGG | - | chr3_2:71096853-71096872 | None:intergenic | 30.0% | |
| !!! | ATAAGCATGTTTTTCTGGTT+CGG | - | chr3_2:71096979-71096998 | None:intergenic | 30.0% |
| ! | GAAACATAAGCATGTTTTTC+TGG | - | chr3_2:71096984-71097003 | None:intergenic | 30.0% |
| GAAAAACATGCTTATGTTTC+TGG | + | chr3_2:71096984-71097003 | Msa0422020:intron | 30.0% | |
| ATCTCTTTATAGACATAAGC+AGG | + | chr3_2:71097176-71097195 | Msa0422020:intron | 30.0% | |
| !! | AATTCATTGTCTACTTTTGG+AGG | - | chr3_2:71097621-71097640 | None:intergenic | 30.0% |
| GGAGCAACAAATATATATGT+TGG | - | chr3_2:71097831-71097850 | None:intergenic | 30.0% | |
| TAATATTTGTGTTGCGTTTC+AGG | + | chr3_2:71097971-71097990 | Msa0422020:intron | 30.0% | |
| AATATTTGTGTTGCGTTTCA+GGG | + | chr3_2:71097972-71097991 | Msa0422020:intron | 30.0% | |
| AGATGAATCATCATTGTTGT+TGG | - | chr3_2:71098347-71098366 | None:intergenic | 30.0% | |
| AACAACAATGATGATTCATC+TGG | + | chr3_2:71098346-71098365 | Msa0422020:CDS | 30.0% | |
| ! | TGTTTCTGATAATTCAACTG+CGG | - | chr3_2:71098470-71098489 | None:intergenic | 30.0% |
| CTTATTCTTTGACACTGATA+TGG | - | chr3_2:71098503-71098522 | None:intergenic | 30.0% | |
| CATATCAGTGTCAAAGAATA+AGG | + | chr3_2:71098501-71098520 | Msa0422020:CDS | 30.0% | |
| GGATGATACTGACAATAAAA+AGG | + | chr3_2:71098612-71098631 | Msa0422020:CDS | 30.0% | |
| TGATACTGACAATAAAAAGG+AGG | + | chr3_2:71098615-71098634 | Msa0422020:CDS | 30.0% | |
| AGACAGAAAACTGCATAATA+AGG | + | chr3_2:71098735-71098754 | Msa0422020:CDS | 30.0% | |
| AAGAGAAAAATGATTCGCAT+CGG | + | chr3_2:71098839-71098858 | Msa0422020:intron | 30.0% | |
| ATTGTATAGAAAGTTGTTGG+GGG | + | chr3_2:71098932-71098951 | Msa0422020:intron | 30.0% | |
| GAAACAAAAAGGCAAATGAT+TGG | - | chr3_2:71099040-71099059 | None:intergenic | 30.0% | |
| GAAGAAGAAAAGAATGAATG+AGG | + | chr3_2:71099187-71099206 | Msa0422020:CDS | 30.0% | |
| TGAAGATTCATCTGAGAATA+TGG | + | chr3_2:71099337-71099356 | Msa0422020:CDS | 30.0% | |
| TTAAATTGCAGACTTAGTGT+TGG | + | chr3_2:71099560-71099579 | Msa0422020:intron | 30.0% | |
| ! | TCATATTAATTTGATGCTCG+TGG | - | chr3_2:71099625-71099644 | None:intergenic | 30.0% |
| TATGAAAGATATGATCGTCA+TGG | + | chr3_2:71099640-71099659 | Msa0422020:CDS | 30.0% | |
| ATGAAAGATATGATCGTCAT+GGG | + | chr3_2:71099641-71099660 | Msa0422020:CDS | 30.0% | |
| AAGACTATGCAATGCAATAA+TGG | + | chr3_2:71099664-71099683 | Msa0422020:CDS | 30.0% | |
| AGACTATGCAATGCAATAAT+GGG | + | chr3_2:71099665-71099684 | Msa0422020:CDS | 30.0% | |
| TAAGCAAGTGAATGTAAAGA+AGG | + | chr3_2:71099853-71099872 | Msa0422020:three_prime_UTR | 30.0% | |
| ! | AGTTTTCATATGCACTGTCA+AGG | + | chr3_2:71094302-71094321 | Msa0422020:five_prime_UTR | 35.0% |
| TTGGGGAAGGATTAAAATGT+CGG | - | chr3_2:71094412-71094431 | None:intergenic | 35.0% | |
| GATCAGAGACATGTTGTATT+TGG | + | chr3_2:71094558-71094577 | Msa0422020:intron | 35.0% | |
| TGTTGTATTTGGCCAAGTAT+TGG | + | chr3_2:71094569-71094588 | Msa0422020:intron | 35.0% | |
| AGTTGGAGTTAGTACCATAT+TGG | + | chr3_2:71094844-71094863 | Msa0422020:intron | 35.0% | |
| GTTGGAGTTAGTACCATATT+GGG | + | chr3_2:71094845-71094864 | Msa0422020:intron | 35.0% | |
| ! | GGATTTGAAATCTCCCAATA+TGG | - | chr3_2:71094861-71094880 | None:intergenic | 35.0% |
| GGAGATTTCAAATCCTACAT+GGG | + | chr3_2:71094866-71094885 | Msa0422020:intron | 35.0% | |
| AAAGAAGGGTTTCTGCAATT+TGG | - | chr3_2:71094912-71094931 | None:intergenic | 35.0% | |
| ! | GACTGTTTCTTAAATGTGGA+AGG | + | chr3_2:71094958-71094977 | Msa0422020:intron | 35.0% |
| !! | ACTTACAAAATCGGTTTGCA+AGG | - | chr3_2:71095281-71095300 | None:intergenic | 35.0% |
| TGAAAAAACCAAGTTCCACT+TGG | + | chr3_2:71095416-71095435 | Msa0422020:intron | 35.0% | |
| ! | GCATGTCTTTTTATCTCTTC+AGG | - | chr3_2:71095557-71095576 | None:intergenic | 35.0% |
| ! | TGTGCCTTTCTCTCTTTTAT+TGG | + | chr3_2:71095622-71095641 | Msa0422020:intron | 35.0% |
| GGTTCCAATAAAAGAGAGAA+AGG | - | chr3_2:71095629-71095648 | None:intergenic | 35.0% | |
| ACACATGAAAATACGGTGTT+GGG | - | chr3_2:71095695-71095714 | None:intergenic | 35.0% | |
| TACACATGAAAATACGGTGT+TGG | - | chr3_2:71095696-71095715 | None:intergenic | 35.0% | |
| ! | GTTTATCTAACTTGCACCTT+TGG | - | chr3_2:71095869-71095888 | None:intergenic | 35.0% |
| AGGTGCAAGTTAGATAAACT+TGG | + | chr3_2:71095870-71095889 | Msa0422020:intron | 35.0% | |
| TTCTACTCTACAGTACTACT+AGG | + | chr3_2:71095960-71095979 | Msa0422020:intron | 35.0% | |
| CAGCAAATAATGTACCAACA+TGG | + | chr3_2:71096087-71096106 | Msa0422020:intron | 35.0% | |
| TAATGTACCAACATGGTTGT+AGG | + | chr3_2:71096094-71096113 | Msa0422020:intron | 35.0% | |
| TGAAGAGCTTACCTCAAAAT+TGG | - | chr3_2:71096127-71096146 | None:intergenic | 35.0% | |
| CTCTTCAGTAAAATTCAACG+CGG | + | chr3_2:71096140-71096159 | Msa0422020:intron | 35.0% | |
| GTTAGGATGGATAACTTTGT+GGG | - | chr3_2:71096268-71096287 | None:intergenic | 35.0% | |
| TGTTAGGATGGATAACTTTG+TGG | - | chr3_2:71096269-71096288 | None:intergenic | 35.0% | |
| TTGTGTATCAAACACCTAAC+TGG | - | chr3_2:71096632-71096651 | None:intergenic | 35.0% | |
| GATACACAAGAAGCTGTAAA+AGG | + | chr3_2:71096643-71096662 | Msa0422020:intron | 35.0% | |
| TACACAAGAAGCTGTAAAAG+GGG | + | chr3_2:71096645-71096664 | Msa0422020:intron | 35.0% | |
| AAAGGCAAAGAGAAATCTTG+GGG | - | chr3_2:71096721-71096740 | None:intergenic | 35.0% | |
| GAAAGGCAAAGAGAAATCTT+GGG | - | chr3_2:71096722-71096741 | None:intergenic | 35.0% | |
| TGAAAGGCAAAGAGAAATCT+TGG | - | chr3_2:71096723-71096742 | None:intergenic | 35.0% | |
| AGATTTCTCTTTGCCTTTCA+TGG | + | chr3_2:71096723-71096742 | Msa0422020:intron | 35.0% | |
| TGTGCATGTGCCATAAAATA+AGG | + | chr3_2:71096895-71096914 | Msa0422020:intron | 35.0% | |
| GTGCATGTGCCATAAAATAA+GGG | + | chr3_2:71096896-71096915 | Msa0422020:intron | 35.0% | |
| GCAAAATATACGCGAGATAT+GGG | - | chr3_2:71096935-71096954 | None:intergenic | 35.0% | |
| AGCAAAATATACGCGAGATA+TGG | - | chr3_2:71096936-71096955 | None:intergenic | 35.0% | |
| GCTATTACTAGTAGGCTATT+TGG | + | chr3_2:71097107-71097126 | Msa0422020:intron | 35.0% | |
| !! | GTAGCTTTATGGAATGTGAT+CGG | + | chr3_2:71097198-71097217 | Msa0422020:intron | 35.0% |
| AGGTAACTAAGATCAGTCAA+TGG | + | chr3_2:71097336-71097355 | Msa0422020:intron | 35.0% | |
| TATATGCAGTTGAAGCAGTA+AGG | - | chr3_2:71097384-71097403 | None:intergenic | 35.0% | |
| !! | CTTAATTTGCAGCAGTTACT+TGG | + | chr3_2:71097430-71097449 | Msa0422020:intron | 35.0% |
| GATGGATGCATAGAAAACTT+CGG | + | chr3_2:71097452-71097471 | Msa0422020:CDS | 35.0% | |
| TAGACATGCCTAGTTAAATC+TGG | - | chr3_2:71097648-71097667 | None:intergenic | 35.0% | |
| TTTACAGTGGGCAATACTTA+TGG | - | chr3_2:71097741-71097760 | None:intergenic | 35.0% | |
| ! | TTTGTGAGCTAGTTTACAGT+GGG | - | chr3_2:71097753-71097772 | None:intergenic | 35.0% |
| ! | TCTAGAATGATCAGAAGTCT+TGG | + | chr3_2:71097871-71097890 | Msa0422020:intron | 35.0% |
| CTAACAAAGGATGTCTATGA+CGG | - | chr3_2:71097948-71097967 | None:intergenic | 35.0% | |
| ! | ACTATCTGAAACCGAACTTT+GGG | + | chr3_2:71098032-71098051 | Msa0422020:CDS | 35.0% |
| AGAAAATCTTTCGAAGCAGT+TGG | + | chr3_2:71098100-71098119 | Msa0422020:CDS | 35.0% | |
| GAAAATCTTTCGAAGCAGTT+GGG | + | chr3_2:71098101-71098120 | Msa0422020:CDS | 35.0% | |
| ! | ATGGAAAATGATGGTGTTAG+TGG | - | chr3_2:71098229-71098248 | None:intergenic | 35.0% |
| TCAACAGAGATGGAAAATGA+TGG | - | chr3_2:71098238-71098257 | None:intergenic | 35.0% | |
| TACTGACAATAAAAAGGAGG+AGG | + | chr3_2:71098618-71098637 | Msa0422020:CDS | 35.0% | |
| !!! | CTTTTTTCTCATGAGATGCA+TGG | - | chr3_2:71098656-71098675 | None:intergenic | 35.0% |
| AGATTCTCCAGATATTTCAC+CGG | + | chr3_2:71099123-71099142 | Msa0422020:intron | 35.0% | |
| AAGAAAAGAATGAATGAGGG+AGG | + | chr3_2:71099191-71099210 | Msa0422020:CDS | 35.0% | |
| ACTTTCAGTTCTATACACTG+TGG | + | chr3_2:71099984-71100003 | Msa0422020:three_prime_UTR | 35.0% | |
| ! | AACTGACTCCCATTAGTGTT+GGG | - | chr3_2:71094286-71094305 | None:intergenic | 40.0% |
| ! | AAACTGACTCCCATTAGTGT+TGG | - | chr3_2:71094287-71094306 | None:intergenic | 40.0% |
| !!! | ACCCAAGCTTAGTGGATTTT+GGG | - | chr3_2:71094369-71094388 | None:intergenic | 40.0% |
| TCTAATAGACCCAAGCTTAG+TGG | - | chr3_2:71094377-71094396 | None:intergenic | 40.0% | |
| ATGCTCAACATTGGAACTTG+GGG | - | chr3_2:71094429-71094448 | None:intergenic | 40.0% | |
| GATGCTCAACATTGGAACTT+GGG | - | chr3_2:71094430-71094449 | None:intergenic | 40.0% | |
| AGATGCTCAACATTGGAACT+TGG | - | chr3_2:71094431-71094450 | None:intergenic | 40.0% | |
| !! | GTATTTGGCCAAGTATTGGA+AGG | + | chr3_2:71094573-71094592 | Msa0422020:intron | 40.0% |
| !! | TGTTAGGTTGATTGAACCAC+AGG | + | chr3_2:71094605-71094624 | Msa0422020:intron | 40.0% |
| AGATTGTGGTTATCAGTGAC+TGG | + | chr3_2:71094632-71094651 | Msa0422020:intron | 40.0% | |
| ! | CTCTTTATTTCTTGCTGCTG+AGG | + | chr3_2:71094697-71094716 | Msa0422020:intron | 40.0% |
| ! | TTTATTTCTTGCTGCTGAGG+AGG | + | chr3_2:71094700-71094719 | Msa0422020:intron | 40.0% |
| AGGAAGGTAGAGAACTCATT+TGG | - | chr3_2:71094766-71094785 | None:intergenic | 40.0% | |
| AATAGGTGGCAAGAGTTTGT+AGG | - | chr3_2:71094805-71094824 | None:intergenic | 40.0% | |
| GGGAGATTTCAAATCCTACA+TGG | + | chr3_2:71094865-71094884 | Msa0422020:intron | 40.0% | |
| ! | CTGCAATTTGGCTTAACTTG+AGG | - | chr3_2:71094900-71094919 | None:intergenic | 40.0% |
| ! | CTAGCACTAGTCTGCAAAAT+TGG | + | chr3_2:71094998-71095017 | Msa0422020:intron | 40.0% |
| AGATGAACCCTGAACATCAA+CGG | - | chr3_2:71095037-71095056 | None:intergenic | 40.0% | |
| TTAAGCTGTCTTGTGGTACA+TGG | + | chr3_2:71095143-71095162 | Msa0422020:intron | 40.0% | |
| ! | CTTTTGATCCAAGTGGAACT+TGG | - | chr3_2:71095427-71095446 | None:intergenic | 40.0% |
| CAGGGTATAAAGCTCATTTC+TGG | + | chr3_2:71096227-71096246 | Msa0422020:intron | 40.0% | |
| ATGGATAACTTTGTGGGTGT+GGG | - | chr3_2:71096262-71096281 | None:intergenic | 40.0% | |
| TGTTACATCCACAACCAGTT+AGG | + | chr3_2:71096615-71096634 | Msa0422020:intron | 40.0% | |
| ATCAAACACCTAACTGGTTG+TGG | - | chr3_2:71096626-71096645 | None:intergenic | 40.0% | |
| ACACAAGAAGCTGTAAAAGG+GGG | + | chr3_2:71096646-71096665 | Msa0422020:intron | 40.0% | |
| ATAATGTGACCATTCTCGTG+AGG | + | chr3_2:71096676-71096695 | Msa0422020:intron | 40.0% | |
| TAATGTGACCATTCTCGTGA+GGG | + | chr3_2:71096677-71096696 | Msa0422020:intron | 40.0% | |
| CTGAAGAAAACTTCCGTTGT+TGG | + | chr3_2:71096787-71096806 | Msa0422020:intron | 40.0% | |
| !! | TTCGGTTTCTAGAATCTGAC+CGG | - | chr3_2:71096961-71096980 | None:intergenic | 40.0% |
| TGCAGCTTGACAAAACAGTA+AGG | - | chr3_2:71097046-71097065 | None:intergenic | 40.0% | |
| TTTGTCAAGCTGCACATGAT+CGG | + | chr3_2:71097052-71097071 | Msa0422020:intron | 40.0% | |
| ACTAGTAATAGCTACCGTGT+GGG | - | chr3_2:71097099-71097118 | None:intergenic | 40.0% | |
| TACTAGTAATAGCTACCGTG+TGG | - | chr3_2:71097100-71097119 | None:intergenic | 40.0% | |
| ACACGGTAGCTATTACTAGT+AGG | + | chr3_2:71097099-71097118 | Msa0422020:intron | 40.0% | |
| ! | GACATAAGCAGGTAGCTTTA+TGG | + | chr3_2:71097187-71097206 | Msa0422020:intron | 40.0% |
| ATTTGCAGCAGTTACTTGGA+TGG | + | chr3_2:71097434-71097453 | Msa0422020:intron | 40.0% | |
| AAAATAGCTTACCAGTGACC+AGG | - | chr3_2:71097504-71097523 | None:intergenic | 40.0% | |
| ! | GTTTGTGAGCTAGTTTACAG+TGG | - | chr3_2:71097754-71097773 | None:intergenic | 40.0% |
| ! | CACTATCTGAAACCGAACTT+TGG | + | chr3_2:71098031-71098050 | Msa0422020:CDS | 40.0% |
| ! | TATTTTCCGCTCCCAAAGTT+CGG | - | chr3_2:71098046-71098065 | None:intergenic | 40.0% |
| AGTAGACGAGGAAGAAGATA+AGG | + | chr3_2:71098135-71098154 | Msa0422020:CDS | 40.0% | |
| TTCCTAGCAATTGGAACTCT+TGG | + | chr3_2:71098184-71098203 | Msa0422020:CDS | 40.0% | |
| AACCAAGAGTTCCAATTGCT+AGG | - | chr3_2:71098189-71098208 | None:intergenic | 40.0% | |
| AGCAATTGGAACTCTTGGTT+TGG | + | chr3_2:71098189-71098208 | Msa0422020:CDS | 40.0% | |
| !! | TGGAACTCTTGGTTTGGAAT+CGG | + | chr3_2:71098195-71098214 | Msa0422020:CDS | 40.0% |
| ! | AATGATGGTGTTAGTGGTGA+TGG | - | chr3_2:71098223-71098242 | None:intergenic | 40.0% |
| ! | TCCATGACTATTTCTCTCTG+CGG | - | chr3_2:71098392-71098411 | None:intergenic | 40.0% |
| AAACTCCATTTGTCCACTTC+AGG | + | chr3_2:71098429-71098448 | Msa0422020:CDS | 40.0% | |
| AACTCCATTTGTCCACTTCA+GGG | + | chr3_2:71098430-71098449 | Msa0422020:CDS | 40.0% | |
| ATATCCCTGAAGTGGACAAA+TGG | - | chr3_2:71098437-71098456 | None:intergenic | 40.0% | |
| GAGATGCATGGCAGATTTAT+TGG | - | chr3_2:71098644-71098663 | None:intergenic | 40.0% | |
| AGTTGAATCAACAGAGGTCT+GGG | - | chr3_2:71098710-71098729 | None:intergenic | 40.0% | |
| AAGTTGAATCAACAGAGGTC+TGG | - | chr3_2:71098711-71098730 | None:intergenic | 40.0% | |
| TGCTGAAGTTGAATCAACAG+AGG | - | chr3_2:71098716-71098735 | None:intergenic | 40.0% | |
| TCCAAGATTCATGTGCAACT+TGG | + | chr3_2:71098815-71098834 | Msa0422020:intron | 40.0% | |
| GAACTTTCCGGTGAAATATC+TGG | - | chr3_2:71099133-71099152 | None:intergenic | 40.0% | |
| !! | GATTTTCAGGGTGAACTTTC+CGG | - | chr3_2:71099145-71099164 | None:intergenic | 40.0% |
| ! | CTGCACATGTTGGATTTTCA+GGG | - | chr3_2:71099157-71099176 | None:intergenic | 40.0% |
| ! | TCTGCACATGTTGGATTTTC+AGG | - | chr3_2:71099158-71099177 | None:intergenic | 40.0% |
| ATACAGCCAAAAAGAGCAGT+TGG | + | chr3_2:71099254-71099273 | Msa0422020:CDS | 40.0% | |
| ACATCTATCTCACTCTGCAT+TGG | + | chr3_2:71099407-71099426 | Msa0422020:CDS | 40.0% | |
| GAAATGAAAACTCAAGCGCA+TGG | + | chr3_2:71099517-71099536 | Msa0422020:intron | 40.0% | |
| !! | CTTAGTGTTGGAGCTCTAAA+AGG | + | chr3_2:71099572-71099591 | Msa0422020:CDS | 40.0% |
| !! | TTGGAGCTCTAAAAGGCAAA+GGG | + | chr3_2:71099579-71099598 | Msa0422020:CDS | 40.0% |
| !! | AAGAGTGTTAAGAGTCTGTC+CGG | + | chr3_2:71099772-71099791 | Msa0422020:three_prime_UTR | 40.0% |
| CATCCTTGTGAAACCATATC+CGG | - | chr3_2:71099794-71099813 | None:intergenic | 40.0% | |
| TGCCCAAAATCCACTAAGCT+TGG | + | chr3_2:71094364-71094383 | Msa0422020:intron | 45.0% | |
| GCCCAAAATCCACTAAGCTT+GGG | + | chr3_2:71094365-71094384 | Msa0422020:intron | 45.0% | |
| !!! | GACCCAAGCTTAGTGGATTT+TGG | - | chr3_2:71094370-71094389 | None:intergenic | 45.0% |
| TCAACATTGGAACTTGGGGA+AGG | - | chr3_2:71094425-71094444 | None:intergenic | 45.0% | |
| TGTCCTTGCCTTCCAATACT+TGG | - | chr3_2:71094584-71094603 | None:intergenic | 45.0% | |
| TGGAAGGCAAGGACATTGTT+AGG | + | chr3_2:71094589-71094608 | Msa0422020:intron | 45.0% | |
| TAACCACAATCTGTGTCCTG+TGG | - | chr3_2:71094624-71094643 | None:intergenic | 45.0% | |
| TGAGGATACTCTACCCATGT+AGG | - | chr3_2:71094882-71094901 | None:intergenic | 45.0% | |
| ATGACTGCCGTTGATGTTCA+GGG | + | chr3_2:71095027-71095046 | Msa0422020:intron | 45.0% | |
| TTGGCATGAAACGGAAGAAG+AGG | - | chr3_2:71095061-71095080 | None:intergenic | 45.0% | |
| !! | TCAGGCTTTAAGCTGTCTTG+TGG | + | chr3_2:71095136-71095155 | Msa0422020:intron | 45.0% |
| ACGGTGATGCCCTTATTGAT+AGG | - | chr3_2:71095344-71095363 | None:intergenic | 45.0% | |
| ACGCTCAGCACTATTAGGTT+TGG | - | chr3_2:71095384-71095403 | None:intergenic | 45.0% | |
| TCTACAGTACTACTAGGTCC+AGG | + | chr3_2:71095966-71095985 | Msa0422020:intron | 45.0% | |
| CTACAGTACTACTAGGTCCA+GGG | + | chr3_2:71095967-71095986 | Msa0422020:intron | 45.0% | |
| TACAGTACTACTAGGTCCAG+GGG | + | chr3_2:71095968-71095987 | Msa0422020:intron | 45.0% | |
| CATATATTACCCGAATCCCC+TGG | - | chr3_2:71095987-71096006 | None:intergenic | 45.0% | |
| !! | ATTTGCAGCTAGTGGGTTTC+AGG | + | chr3_2:71096208-71096227 | Msa0422020:intron | 45.0% |
| !! | TTTGCAGCTAGTGGGTTTCA+GGG | + | chr3_2:71096209-71096228 | Msa0422020:intron | 45.0% |
| TGGATAACTTTGTGGGTGTG+GGG | - | chr3_2:71096261-71096280 | None:intergenic | 45.0% | |
| GATGGATAACTTTGTGGGTG+TGG | - | chr3_2:71096263-71096282 | None:intergenic | 45.0% | |
| AATGTGACCATTCTCGTGAG+GGG | + | chr3_2:71096678-71096697 | Msa0422020:intron | 45.0% | |
| TTCTCTTTGCCTTTCATGGC+TGG | + | chr3_2:71096727-71096746 | Msa0422020:intron | 45.0% | |
| TGGATATCACACGCCAACAA+CGG | - | chr3_2:71096803-71096822 | None:intergenic | 45.0% | |
| ATCCATTGCCTGAAGATTGC+TGG | + | chr3_2:71096818-71096837 | Msa0422020:intron | 45.0% | |
| TCTATCGGTGTGTATCACTG+TGG | + | chr3_2:71096872-71096891 | Msa0422020:intron | 45.0% | |
| ! | CTCGCGTATATTTTGCTTCC+CGG | + | chr3_2:71096939-71096958 | Msa0422020:intron | 45.0% |
| !! | TCGGTTTCTAGAATCTGACC+GGG | - | chr3_2:71096960-71096979 | None:intergenic | 45.0% |
| CGGATAGGTGAAGATTGATC+AGG | + | chr3_2:71097072-71097091 | Msa0422020:intron | 45.0% | |
| AAGATTGATCAGGACCCACA+CGG | + | chr3_2:71097082-71097101 | Msa0422020:intron | 45.0% | |
| CACTGAACCTTTCAAAGACC+TGG | + | chr3_2:71097483-71097502 | Msa0422020:CDS | 45.0% | |
| ATGGACGGTGATATATGCGT+TGG | - | chr3_2:71097722-71097741 | None:intergenic | 45.0% | |
| CAGTGGGCAATACTTATGGA+CGG | - | chr3_2:71097737-71097756 | None:intergenic | 45.0% | |
| CCATGAACTCAAGTGGCATT+CGG | - | chr3_2:71097917-71097936 | None:intergenic | 45.0% | |
| ! | ATGCCACTTGAGTTCATGGT+TGG | + | chr3_2:71097918-71097937 | Msa0422020:intron | 45.0% |
| CAAAGGATGTCTATGACGGT+TGG | - | chr3_2:71097944-71097963 | None:intergenic | 45.0% | |
| AGACGAGGAAGAAGATAAGG+AGG | + | chr3_2:71098138-71098157 | Msa0422020:CDS | 45.0% | |
| AGGAAGAAGATAAGGAGGCA+TGG | + | chr3_2:71098143-71098162 | Msa0422020:CDS | 45.0% | |
| ! | GGAAGAAGATAAGGAGGCAT+GGG | + | chr3_2:71098144-71098163 | Msa0422020:CDS | 45.0% |
| ! | GAAGAAGATAAGGAGGCATG+GGG | + | chr3_2:71098145-71098164 | Msa0422020:CDS | 45.0% |
| AGTTCCAATTGCTAGGAAGC+CGG | - | chr3_2:71098182-71098201 | None:intergenic | 45.0% | |
| GATCAGCTTCAGCTCATTCT+CGG | - | chr3_2:71098293-71098312 | None:intergenic | 45.0% | |
| ACCGCAGAGAGAAATAGTCA+TGG | + | chr3_2:71098388-71098407 | Msa0422020:CDS | 45.0% | |
| CCAAAGAGATATCCCTGAAG+TGG | - | chr3_2:71098445-71098464 | None:intergenic | 45.0% | |
| CCACTTCAGGGATATCTCTT+TGG | + | chr3_2:71098442-71098461 | Msa0422020:CDS | 45.0% | |
| GAGAAGCAAACAAGCAGATC+AGG | + | chr3_2:71098570-71098589 | Msa0422020:CDS | 45.0% | |
| GCAGATCAGGACAATCTTGT+TGG | + | chr3_2:71098583-71098602 | Msa0422020:CDS | 45.0% | |
| GGACAATCTTGTTGGAGCAA+AGG | + | chr3_2:71098591-71098610 | Msa0422020:CDS | 45.0% | |
| GCCAAGTTGCACATGAATCT+TGG | - | chr3_2:71098819-71098838 | None:intergenic | 45.0% | |
| TCGTACTTCTCTGCACATGT+TGG | - | chr3_2:71099167-71099186 | None:intergenic | 45.0% | |
| ACATAGGACAGTGCAAGAAG+AGG | + | chr3_2:71099285-71099304 | Msa0422020:CDS | 45.0% | |
| AGGCAACTCCAAATTACCCT+TGG | + | chr3_2:71099305-71099324 | Msa0422020:CDS | 45.0% | |
| CAACTCCAAATTACCCTTGG+CGG | + | chr3_2:71099308-71099327 | Msa0422020:CDS | 45.0% | |
| CATCTGAGAATATGGAGCAG+TGG | + | chr3_2:71099345-71099364 | Msa0422020:CDS | 45.0% | |
| GCAGTGGATCAAAACAGATG+TGG | + | chr3_2:71099361-71099380 | Msa0422020:CDS | 45.0% | |
| ! | CAAGCGCATGGCTAAGATTT+TGG | + | chr3_2:71099529-71099548 | Msa0422020:intron | 45.0% |
| !! | GTTGGAGCTCTAAAAGGCAA+AGG | + | chr3_2:71099578-71099597 | Msa0422020:CDS | 45.0% |
| TCTAAAAGGCAAAGGGCGAA+CGG | + | chr3_2:71099586-71099605 | Msa0422020:CDS | 45.0% | |
| GTTAAGAGTCTGTCCGGATA+TGG | + | chr3_2:71099778-71099797 | Msa0422020:three_prime_UTR | 45.0% | |
| TGTCCGGATATGGTTTCACA+AGG | + | chr3_2:71099788-71099807 | Msa0422020:three_prime_UTR | 45.0% | |
| ACATGTCTCTGATCCAGCCA+CGG | - | chr3_2:71094552-71094571 | None:intergenic | 50.0% | |
| !! | TGGCCAAGTATTGGAAGGCA+AGG | + | chr3_2:71094578-71094597 | Msa0422020:intron | 50.0% |
| GAACCACAGGACACAGATTG+TGG | + | chr3_2:71094618-71094637 | Msa0422020:intron | 50.0% | |
| GATGACTGCCGTTGATGTTC+AGG | + | chr3_2:71095026-71095045 | Msa0422020:intron | 50.0% | |
| ! | ACCTAATAGTGCTGAGCGTG+AGG | + | chr3_2:71095385-71095404 | Msa0422020:intron | 50.0% |
| ! | CCTAATAGTGCTGAGCGTGA+GGG | + | chr3_2:71095386-71095405 | Msa0422020:intron | 50.0% |
| ACTACTAGGTCCAGGGGATT+CGG | + | chr3_2:71095974-71095993 | Msa0422020:intron | 50.0% | |
| ATGTGACCATTCTCGTGAGG+GGG | + | chr3_2:71096679-71096698 | Msa0422020:intron | 50.0% | |
| CATGTACGACCAGTGACACA+TGG | - | chr3_2:71096755-71096774 | None:intergenic | 50.0% | |
| ! | CATGTGTCACTGGTCGTACA+TGG | + | chr3_2:71096753-71096772 | Msa0422020:intron | 50.0% |
| TGCCAGCAATCTTCAGGCAA+TGG | - | chr3_2:71096823-71096842 | None:intergenic | 50.0% | |
| CGTGTATGCCAGCAATCTTC+AGG | - | chr3_2:71096829-71096848 | None:intergenic | 50.0% | |
| CAAGCTGCACATGATCGGAT+AGG | + | chr3_2:71097057-71097076 | Msa0422020:intron | 50.0% | |
| CCAGTGACCAGGTCTTTGAA+AGG | - | chr3_2:71097493-71097512 | None:intergenic | 50.0% | |
| CCTTTCAAAGACCTGGTCAC+TGG | + | chr3_2:71097490-71097509 | Msa0422020:CDS | 50.0% | |
| ATCAGAAGTCTTGGCGAGTG+AGG | + | chr3_2:71097880-71097899 | Msa0422020:intron | 50.0% | |
| TCAGAAGTCTTGGCGAGTGA+GGG | + | chr3_2:71097881-71097900 | Msa0422020:intron | 50.0% | |
| ! | CCGAATGCCACTTGAGTTCA+TGG | + | chr3_2:71097914-71097933 | Msa0422020:intron | 50.0% |
| TGGCCAACCATGAACTCAAG+TGG | - | chr3_2:71097924-71097943 | None:intergenic | 50.0% | |
| TTTGTGTTGCGTTTCAGGGC+AGG | + | chr3_2:71097976-71097995 | Msa0422020:intron | 50.0% | |
| ! | GCAGGCAACATCAGTTGATG+AGG | + | chr3_2:71097994-71098013 | Msa0422020:CDS | 50.0% |
| ! | CTGAAACCGAACTTTGGGAG+CGG | + | chr3_2:71098037-71098056 | Msa0422020:CDS | 50.0% |
| TCTTTCGAAGCAGTTGGGAG+TGG | + | chr3_2:71098106-71098125 | Msa0422020:CDS | 50.0% | |
| TTCCAATTGCTAGGAAGCCG+GGG | - | chr3_2:71098180-71098199 | None:intergenic | 50.0% | |
| GTTCCAATTGCTAGGAAGCC+GGG | - | chr3_2:71098181-71098200 | None:intergenic | 50.0% | |
| TTCTCTCTGCGGTGCTTACA+TGG | - | chr3_2:71098381-71098400 | None:intergenic | 50.0% | |
| ACACAGCCAGAGAACAACAC+TGG | + | chr3_2:71098534-71098553 | Msa0422020:CDS | 50.0% | |
| CACAGCCAGAGAACAACACT+GGG | + | chr3_2:71098535-71098554 | Msa0422020:CDS | 50.0% | |
| ! | AGAGGTCTGGGAAGAAGCAT+GGG | - | chr3_2:71098698-71098717 | None:intergenic | 50.0% |
| CCCTCACGCTCAGCACTATT+AGG | - | chr3_2:71095389-71095408 | None:intergenic | 55.0% | |
| CTACTAGGTCCAGGGGATTC+GGG | + | chr3_2:71095975-71095994 | Msa0422020:intron | 55.0% | |
| CACATGGCACCAGCCATGAA+AGG | - | chr3_2:71096739-71096758 | None:intergenic | 55.0% | |
| GAGTGGTAGAGCAGTAGACG+AGG | + | chr3_2:71098123-71098142 | Msa0422020:CDS | 55.0% | |
| ! | GAAGATAAGGAGGCATGGGG+TGG | + | chr3_2:71098148-71098167 | Msa0422020:CDS | 55.0% |
| ! | GCATGGGGTGGTATTTTCCC+CGG | + | chr3_2:71098160-71098179 | Msa0422020:CDS | 55.0% |
| TTCCCCGGCTTCCTAGCAAT+TGG | + | chr3_2:71098175-71098194 | Msa0422020:CDS | 55.0% | |
| ! | GCTCACCCAGTGTTGTTCTC+TGG | - | chr3_2:71098543-71098562 | None:intergenic | 55.0% |
| ! | GAGGTCTGGGAAGAAGCATG+GGG | - | chr3_2:71098697-71098716 | None:intergenic | 55.0% |
| CAGAGGTCTGGGAAGAAGCA+TGG | - | chr3_2:71098699-71098718 | None:intergenic | 55.0% | |
| CTCCAAATTACCCTTGGCGG+TGG | + | chr3_2:71099311-71099330 | Msa0422020:CDS | 55.0% | |
| TGCCACCGCCAAGGGTAATT+TGG | - | chr3_2:71099316-71099335 | None:intergenic | 55.0% | |
| ATCTTCACTGCCACCGCCAA+GGG | - | chr3_2:71099324-71099343 | None:intergenic | 55.0% | |
| AATCTTCACTGCCACCGCCA+AGG | - | chr3_2:71099325-71099344 | None:intergenic | 55.0% | |
| AGGCAAAGGGCGAACGGAAT+TGG | + | chr3_2:71099592-71099611 | Msa0422020:CDS | 55.0% | |
| GGCAAAGGGCGAACGGAATT+GGG | + | chr3_2:71099593-71099612 | Msa0422020:CDS | 55.0% | |
| GATGACATCGGCAGACACCG+TGG | + | chr3_2:71094532-71094551 | Msa0422020:intron | 60.0% | |
| GCAGATCCCCCTCACGAGAA+TGG | - | chr3_2:71096688-71096707 | None:intergenic | 60.0% | |
| TCTCGTGAGGGGGATCTGCT+AGG | + | chr3_2:71096689-71096708 | Msa0422020:intron | 60.0% | |
| !! | TGGCTGGTGCCATGTGTCAC+TGG | + | chr3_2:71096743-71096762 | Msa0422020:intron | 60.0% |
| ACATCGGCAGACACCGTGGC+TGG | + | chr3_2:71094536-71094555 | Msa0422020:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 71094282 | 71100007 | 71094282 | ID=Msa0422020;Name=Msa0422020 |
| chr3_2 | mRNA | 71094282 | 71100007 | 71094282 | ID=Msa0422020-mRNA-1;Parent=Msa0422020;Name=Msa0422020-mRNA-1;_AED=0.11;_eAED=0.11;_QI=111|0.8|0.83|1|0.6|0.5|6|304|430 |
| chr3_2 | exon | 71094282 | 71094323 | 71094282 | ID=Msa0422020-mRNA-1:exon:17293;Parent=Msa0422020-mRNA-1 |
| chr3_2 | exon | 71097263 | 71097337 | 71097263 | ID=Msa0422020-mRNA-1:exon:17294;Parent=Msa0422020-mRNA-1 |
| chr3_2 | exon | 71097442 | 71097511 | 71097442 | ID=Msa0422020-mRNA-1:exon:17295;Parent=Msa0422020-mRNA-1 |
| chr3_2 | exon | 71097993 | 71098756 | 71097993 | ID=Msa0422020-mRNA-1:exon:17296;Parent=Msa0422020-mRNA-1 |
| chr3_2 | exon | 71099125 | 71099444 | 71099125 | ID=Msa0422020-mRNA-1:exon:17297;Parent=Msa0422020-mRNA-1 |
| chr3_2 | exon | 71099571 | 71100007 | 71099571 | ID=Msa0422020-mRNA-1:exon:17298;Parent=Msa0422020-mRNA-1 |
| chr3_2 | five_prime_UTR | 71094282 | 71094323 | 71094282 | ID=Msa0422020-mRNA-1:five_prime_utr;Parent=Msa0422020-mRNA-1 |
| chr3_2 | five_prime_UTR | 71097263 | 71097331 | 71097263 | ID=Msa0422020-mRNA-1:five_prime_utr;Parent=Msa0422020-mRNA-1 |
| chr3_2 | CDS | 71097332 | 71097337 | 71097332 | ID=Msa0422020-mRNA-1:cds;Parent=Msa0422020-mRNA-1 |
| chr3_2 | CDS | 71097442 | 71097511 | 71097442 | ID=Msa0422020-mRNA-1:cds;Parent=Msa0422020-mRNA-1 |
| chr3_2 | CDS | 71097993 | 71098756 | 71097993 | ID=Msa0422020-mRNA-1:cds;Parent=Msa0422020-mRNA-1 |
| chr3_2 | CDS | 71099125 | 71099444 | 71099125 | ID=Msa0422020-mRNA-1:cds;Parent=Msa0422020-mRNA-1 |
| chr3_2 | CDS | 71099571 | 71099703 | 71099571 | ID=Msa0422020-mRNA-1:cds;Parent=Msa0422020-mRNA-1 |
| chr3_2 | three_prime_UTR | 71099704 | 71100007 | 71099704 | ID=Msa0422020-mRNA-1:three_prime_utr;Parent=Msa0422020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
