AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0277420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0277420 MtrunA17_Chr2g0290151 98.696 460 2 1 1 456 1 460 0.0 912
Msa0277420 MtrunA17_Chr1g0152561 44.444 360 161 2 98 448 9 338 6.42e-92 282
Msa0277420 MtrunA17_Chr3g0134761 48.693 306 141 3 152 453 44 337 2.94e-90 278
Msa0277420 MtrunA17_Chr1g0183781 52.330 279 132 1 175 453 444 721 3.53e-82 268
Msa0277420 MtrunA17_Chr3g0106931 50.530 283 139 1 167 449 549 830 1.74e-76 255
Msa0277420 MtrunA17_Chr7g0261371 50.000 278 138 1 175 452 518 794 8.87e-76 252
Msa0277420 MtrunA17_Chr4g0044411 44.444 279 155 0 171 449 373 651 6.29e-68 228
Msa0277420 MtrunA17_Chr4g0031431 47.547 265 139 0 186 450 368 632 7.39e-68 228
Msa0277420 MtrunA17_Chr1g0199321 47.518 282 148 0 171 452 345 626 1.29e-67 227
Msa0277420 MtrunA17_Chr7g0237931 44.944 267 145 1 178 444 341 605 3.98e-61 209
Msa0277420 MtrunA17_Chr7g0248251 39.721 287 173 0 163 449 359 645 9.58e-58 201
Msa0277420 MtrunA17_Chr5g0437411 40.532 301 173 5 150 444 383 683 2.18e-52 187
Msa0277420 MtrunA17_Chr2g0282351 75.238 105 17 2 1 105 1 96 2.16e-42 145
Msa0277420 MtrunA17_Chr2g0284461 35.762 302 182 8 152 445 377 674 1.84e-35 139
Msa0277420 MtrunA17_Chr5g0429231 35.959 292 182 4 170 456 33 324 1.77e-34 132
Msa0277420 MtrunA17_Chr8g0377151 34.783 276 169 6 186 452 443 716 6.45e-30 123
Msa0277420 MtrunA17_Chr7g0275081 34.783 276 170 6 180 447 180 453 1.66e-27 114
Msa0277420 MtrunA17_Chr3g0118001 32.472 271 178 2 178 445 218 486 2.04e-27 114
Msa0277420 MtrunA17_Chr6g0449461 33.793 290 179 7 175 455 6 291 3.52e-26 108
Msa0277420 MtrunA17_Chr4g0059201 31.636 275 181 6 186 453 437 711 1.60e-25 110
Msa0277420 MtrunA17_Chr3g0122721 33.086 269 164 8 192 449 448 711 9.73e-25 107
Msa0277420 MtrunA17_Chr4g0048811 33.333 204 129 5 245 445 121 320 5.25e-24 102
Msa0277420 MtrunA17_Chr7g0234671 30.142 282 184 8 173 445 173 450 1.78e-23 102
Msa0277420 MtrunA17_Chr5g0435041 30.800 250 134 5 203 451 92 303 7.27e-22 97.1
Msa0277420 MtrunA17_Chr2g0280671 31.698 265 165 5 192 449 128 383 8.05e-21 94.0
Msa0277420 MtrunA17_Chr1g0189811 33.333 273 161 8 186 444 171 436 8.01e-20 91.7
Msa0277420 MtrunA17_Chr1g0199031 38.333 120 57 1 245 364 15 117 8.97e-20 85.1
Msa0277420 MtrunA17_Chr6g0451581 29.469 207 144 1 175 381 242 446 9.03e-20 92.0
Msa0277420 MtrunA17_Chr3g0111451 32.389 247 126 5 203 447 113 320 4.81e-19 89.0
Msa0277420 MtrunA17_Chr1g0149941 29.412 272 178 7 186 445 189 458 1.20e-18 88.6
Msa0277420 MtrunA17_Chr3g0137061 28.859 298 198 7 160 445 99 394 1.54e-18 87.8
Msa0277420 MtrunA17_Chr3g0117851 28.782 271 143 8 186 446 393 623 1.25e-17 85.5
Msa0277420 MtrunA17_Chr4g0013091 31.900 279 145 10 192 445 439 697 1.02e-16 82.8
Msa0277420 MtrunA17_Chr5g0413681 30.877 285 189 6 178 454 390 674 6.55e-15 77.4
Msa0277420 MtrunA17_Chr8g0353271 27.740 292 193 8 170 444 7 297 3.05e-13 70.9
Msa0277420 MtrunA17_Chr5g0394261 27.698 278 181 10 185 447 118 390 9.09e-13 70.5
Msa0277420 MtrunA17_Chr5g0394261 28.436 211 145 3 169 377 197 403 3.32e-11 65.5
Msa0277420 MtrunA17_Chr5g0404311 28.889 180 115 6 279 448 537 713 1.49e-12 69.7
Msa0277420 MtrunA17_Chr8g0350681 27.530 247 168 7 211 451 238 479 1.83e-12 69.3
Msa0277420 MtrunA17_Chr8g0373031 27.778 180 121 3 278 450 536 713 5.03e-12 68.2
Msa0277420 MtrunA17_Chr1g0205751 26.756 299 199 10 169 452 105 398 6.57e-12 67.8
Msa0277420 MtrunA17_Chr1g0205751 27.778 216 150 3 169 382 200 411 1.52e-11 66.6
Msa0277420 MtrunA17_Chr7g0259851 26.697 221 154 4 175 392 189 404 1.16e-11 67.0
Msa0277420 MtrunA17_Chr3g0084371 30.818 159 109 1 186 343 271 429 2.89e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0277420 AT4G16490.1 71.882 473 113 8 1 455 1 471 0.0 611
Msa0277420 AT3G01400.1 45.257 369 171 2 81 448 4 342 6.03e-93 285
Msa0277420 AT5G58680.1 43.902 369 175 5 82 448 3 341 1.12e-86 269
Msa0277420 AT2G23140.3 41.781 438 228 9 35 449 198 631 2.06e-85 275
Msa0277420 AT2G23140.5 41.781 438 228 9 35 449 198 631 2.06e-85 275
Msa0277420 AT2G23140.1 41.781 438 228 9 35 449 390 823 1.62e-83 274
Msa0277420 AT2G23140.2 41.781 438 228 9 35 449 387 820 1.80e-83 274
Msa0277420 AT2G23140.4 41.781 438 228 9 35 449 387 820 1.80e-83 274
Msa0277420 AT5G67340.1 49.828 291 144 2 160 449 412 701 1.47e-77 256
Msa0277420 AT5G67340.1 33.702 181 106 5 152 329 536 705 9.51e-11 64.7
Msa0277420 AT5G67340.2 49.828 291 144 2 160 449 412 701 1.47e-77 256
Msa0277420 AT5G67340.2 33.702 181 106 5 152 329 536 705 9.51e-11 64.7
Msa0277420 AT3G54790.2 48.929 280 140 3 170 448 438 715 9.61e-69 233
Msa0277420 AT3G54790.3 48.929 280 140 3 170 448 474 751 1.70e-68 233
Msa0277420 AT3G54790.1 48.929 280 140 3 170 448 474 751 1.70e-68 233
Msa0277420 AT3G46510.1 46.691 272 144 1 186 456 369 640 2.45e-66 225
Msa0277420 AT1G23030.1 44.286 280 155 1 171 449 333 612 6.56e-66 223
Msa0277420 AT1G71020.2 44.326 282 155 2 171 450 195 476 1.35e-64 216
Msa0277420 AT3G54850.1 45.196 281 154 0 175 455 351 631 1.40e-63 217
Msa0277420 AT1G71020.1 44.803 279 152 2 171 447 343 621 2.43e-63 216
Msa0277420 AT2G28830.1 43.382 272 151 3 186 454 300 571 5.14e-60 206
Msa0277420 AT5G42340.1 41.694 307 175 2 146 449 354 659 1.18e-56 199
Msa0277420 AT1G29340.1 35.759 316 181 9 152 454 389 695 4.04e-33 133
Msa0277420 AT3G07360.5 33.566 286 178 8 178 454 43 325 1.29e-31 124
Msa0277420 AT3G07360.3 33.566 286 178 8 178 454 43 325 1.29e-31 124
Msa0277420 AT3G07360.9 33.566 286 178 8 178 454 43 325 1.29e-31 124
Msa0277420 AT3G07360.6 33.566 286 178 8 178 454 43 325 1.29e-31 124
Msa0277420 AT3G07360.2 33.566 286 178 8 178 454 43 325 1.29e-31 124
Msa0277420 AT3G07360.8 33.566 286 178 8 178 454 43 325 1.29e-31 124
Msa0277420 AT3G07360.10 33.566 286 178 8 178 454 43 325 1.29e-31 124
Msa0277420 AT3G07360.7 33.566 286 178 8 178 454 43 325 1.29e-31 124
Msa0277420 AT3G07360.4 33.566 286 178 8 178 454 43 325 1.29e-31 124
Msa0277420 AT3G07360.1 34.296 277 170 8 180 447 180 453 5.02e-31 124
Msa0277420 AT1G67530.2 34.432 273 169 6 192 456 447 717 5.78e-31 127
Msa0277420 AT1G67530.1 34.432 273 169 6 192 456 447 717 5.78e-31 127
Msa0277420 AT1G67530.4 34.432 273 169 6 192 456 447 717 5.78e-31 127
Msa0277420 AT4G12710.1 35.424 271 166 6 189 450 65 335 6.98e-30 120
Msa0277420 AT5G62560.1 34.109 258 163 3 193 445 258 513 1.14e-27 116
Msa0277420 AT1G24330.1 32.971 276 172 8 183 449 438 709 1.31e-27 116
Msa0277420 AT1G24330.2 32.971 276 172 8 183 449 438 709 1.31e-27 116
Msa0277420 AT4G21350.1 34.701 268 169 4 179 444 104 367 1.61e-25 107
Msa0277420 AT3G03440.1 32.331 266 171 4 189 447 84 347 1.22e-24 105
Msa0277420 AT5G65200.1 28.322 286 192 3 172 446 227 510 5.12e-24 105
Msa0277420 AT5G40140.1 28.179 291 202 5 159 445 219 506 8.41e-23 101
Msa0277420 AT5G14510.1 34.440 241 144 8 216 446 44 280 1.40e-22 98.6
Msa0277420 AT1G27910.1 30.519 308 201 6 157 453 406 711 8.87e-22 99.0
Msa0277420 AT5G01830.1 30.931 333 172 11 130 445 353 644 3.74e-19 90.9
Msa0277420 AT3G47820.1 31.298 262 170 5 192 445 228 487 9.34e-19 89.4
Msa0277420 AT1G08315.1 26.962 293 193 8 170 442 8 299 5.77e-18 85.1
Msa0277420 AT4G31890.3 27.653 311 197 9 159 445 122 428 3.39e-17 84.3
Msa0277420 AT4G31890.2 27.653 311 197 9 159 445 122 428 3.39e-17 84.3
Msa0277420 AT4G31890.1 27.653 311 197 9 159 445 122 428 3.39e-17 84.3
Msa0277420 AT2G25130.1 28.996 269 173 8 191 445 131 395 3.69e-17 84.0
Msa0277420 AT5G18320.1 29.391 279 182 6 180 445 171 447 4.65e-17 83.6
Msa0277420 AT1G10560.1 29.391 279 183 9 189 455 408 684 3.65e-16 81.6
Msa0277420 AT1G60190.1 28.520 277 185 9 189 452 394 670 2.82e-15 79.0
Msa0277420 AT2G27430.1 28.990 307 193 9 157 448 63 359 7.37e-13 70.5

Find 157 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCAGAAACTTGTAATATTT+TGG 0.122061 2_3:+9973213 Msa0277420:three_prime_UTR
GCCAAAATATTACAAGTTTC+TGG 0.142504 2_3:-9973214 None:intergenic
CTTTGAGCCTTTGGTTGATT+AGG 0.218183 2_3:+9972748 Msa0277420:three_prime_UTR
AGAGAAGTAATTGCGTATTT+TGG 0.241782 2_3:+9972367 Msa0277420:exon
TTGATTTATGTATTGAAAAC+TGG 0.259205 2_3:+9971116 Msa0277420:CDS
GGTACAGATGACCCTAGTTT+TGG 0.260031 2_3:+9972786 Msa0277420:three_prime_UTR
TTCCAATTTGTTGTGTTTCC+AGG 0.266426 2_3:+9972582 Msa0277420:three_prime_UTR
TACAGTGTGCTAAACATTCT+TGG 0.282556 2_3:+9972457 Msa0277420:three_prime_UTR
AAAAGCTCAATTGGAGCTTC+AGG 0.285745 2_3:+9971203 Msa0277420:CDS
ATGAAATGAAATGAAATTAA+AGG 0.299143 2_3:-9970130 None:intergenic
TGTGTATATAGCGGCTTTGC+TGG 0.309929 2_3:+9972430 Msa0277420:three_prime_UTR
CTGTAACGAATTTGAGATTA+GGG 0.318885 2_3:-9970305 None:intergenic
CATGGTTGTCTTTGAGCCTT+TGG 0.326356 2_3:+9972739 Msa0277420:three_prime_UTR
TGAATGTTTAGAATAAAATA+TGG 0.333674 2_3:+9973153 Msa0277420:three_prime_UTR
AATAGATGAATGATATTGAT+AGG 0.337033 2_3:-9970403 None:intergenic
TAATGGAAAACGATTTGAAT+TGG 0.343954 2_3:-9970373 None:intergenic
CGATACACAGGTGGATCTTT+CGG 0.345517 2_3:-9970514 None:intergenic
CCTAGTACTTCACTGCTATC+TGG 0.346490 2_3:+9972877 Msa0277420:three_prime_UTR
CTCCTGGAAACACAACAAAT+TGG 0.354614 2_3:-9972584 None:intergenic
GAAGAGAATAAAAGCTCAAT+TGG 0.364861 2_3:+9971194 Msa0277420:CDS
TTGGTTTCGCTTCTGTTGAA+TGG 0.365664 2_3:+9971239 Msa0277420:CDS
GTTATCTTCATCGAAGATAC+TGG 0.372226 2_3:-9970475 None:intergenic
ACTGTAACGAATTTGAGATT+AGG 0.373810 2_3:-9970306 None:intergenic
AACAGATGAAGCTGAGTAAC+TGG 0.382820 2_3:-9972991 None:intergenic
GGAGTTACATGGCGTGTGTT+TGG 0.383146 2_3:+9972603 Msa0277420:three_prime_UTR
GAGTATCAGATATGGTATTC+TGG 0.386243 2_3:-9973100 None:intergenic
AGCTAGTGACACGGTGGATT+CGG 0.390998 2_3:-9972632 None:intergenic
CTTTGCTTGTTCCTTTGCTT+CGG 0.403894 2_3:+9970988 Msa0277420:CDS
TCTGTGTCCATAGCTCCTTT+TGG 0.406665 2_3:+9972906 Msa0277420:three_prime_UTR
AAGACAACCATGCTTGTGTT+TGG 0.417373 2_3:-9972728 None:intergenic
GGTGAAGCCGTTGGTGGAGC+TGG 0.424429 2_3:+9971352 Msa0277420:CDS
TTTCACAGACCCATCTTCAA+TGG 0.425894 2_3:-9971495 None:intergenic
CTTGTCGCTCTTTCGCAGAA+TGG 0.428040 2_3:+9971611 Msa0277420:CDS
TCTAGAGAAACCATTGTTGA+AGG 0.439249 2_3:-9970339 None:intergenic
CTTGTGGAAGCCATTGAAGA+TGG 0.441589 2_3:+9971485 Msa0277420:CDS
TTGTGTTTCCAGGAGTTACA+TGG 0.452715 2_3:+9972592 Msa0277420:three_prime_UTR
CCAGATAGCAGTGAAGTACT+AGG 0.455977 2_3:-9972877 None:intergenic
TATCTGATCTTTCAATAGCT+TGG 0.456089 2_3:-9973374 None:intergenic
CTGGTGGCTGAGCAAGGGAA+TGG 0.460644 2_3:+9971371 Msa0277420:CDS
TGCATGAATATAGCTAGGTT+TGG 0.466969 2_3:+9972542 Msa0277420:three_prime_UTR
TTCAGGGGCGATTCCACCGT+TGG 0.467013 2_3:+9971220 Msa0277420:CDS
ACCGCGTGCTCTTGTGTCCA+TGG 0.470277 2_3:-9971020 None:intergenic
GTGGAGCTGGTGGCTGAGCA+AGG 0.473173 2_3:+9971365 Msa0277420:CDS
TCGTGACAGAGTATCAGATA+TGG 0.474276 2_3:-9973108 None:intergenic
CGAAGGGAAGGAAGCGATTG+TGG 0.476287 2_3:+9971442 Msa0277420:CDS
TCACGAAATATCAGTGTGAA+TGG 0.481829 2_3:+9973125 Msa0277420:three_prime_UTR
AACACACGCCATGTAACTCC+TGG 0.489743 2_3:-9972600 None:intergenic
AAAGCTCAATTGGAGCTTCA+GGG 0.489989 2_3:+9971204 Msa0277420:CDS
AAGATCTAGAAGGTCTTGTT+CGG 0.492431 2_3:-9970619 None:intergenic
GATTGCTTGTTAGAGAAGGT+GGG 0.496800 2_3:+9971579 Msa0277420:CDS
AGCTATATTCATGCATCTAA+AGG 0.498385 2_3:-9972534 None:intergenic
AAAGAGAGAGCGGTGAGTGC+TGG 0.499031 2_3:+9971326 Msa0277420:CDS
AAGGAAGCGATTGTGGAAGA+AGG 0.502557 2_3:+9971449 Msa0277420:CDS
AAGCTTGAGAAAGATCTAGA+AGG 0.504088 2_3:-9970629 None:intergenic
CAAGCTCCAATTTAACCAAA+AGG 0.504254 2_3:-9972921 None:intergenic
TTAGATGCATGAATATAGCT+AGG 0.505666 2_3:+9972537 Msa0277420:three_prime_UTR
TGATTTATGTATTGAAAACT+GGG 0.506761 2_3:+9971117 Msa0277420:CDS
TATGTGTTCTTGACAAAAGC+AGG 0.509013 2_3:+9973188 Msa0277420:three_prime_UTR
TCAAAATCACAGCGAAACAT+AGG 0.512047 2_3:+9970429 Msa0277420:CDS
AATGAAATGAAATTAAAGGC+TGG 0.513835 2_3:-9970126 None:intergenic
GTTGAACCTGAGCCTTGCAT+GGG 0.513964 2_3:+9970765 Msa0277420:CDS
CTTCTTCAGTGGCTGTGAAA+CGG 0.515156 2_3:+9970886 Msa0277420:CDS
ACTGGATCTTCTTGTTCGCA+TGG 0.518937 2_3:-9970457 None:intergenic
GAAACCATTGTTGAAGGTGA+AGG 0.521147 2_3:-9970333 None:intergenic
GGATTGCTTGTTAGAGAAGG+TGG 0.521997 2_3:+9971578 Msa0277420:CDS
TGCTTCGGTGTAGTGATCCA+TGG 0.522512 2_3:+9971003 Msa0277420:CDS
GTGGTGTTGAATAGCTTAGC+TGG 0.523643 2_3:+9971413 Msa0277420:CDS
GCTTCCAAGAATCACAAATC+CGG 0.526706 2_3:+9970582 Msa0277420:CDS
TGGTGGCTGAGCAAGGGAAT+GGG 0.526822 2_3:+9971372 Msa0277420:CDS
ACGGTGAAGCTTTGTGTGGA+TGG 0.533537 2_3:+9970855 Msa0277420:CDS
CGCTAACCTCTGAAGCTCAC+CGG 0.536075 2_3:-9970691 None:intergenic
AATTTAACCAAAAGGAGCTA+TGG 0.536811 2_3:-9972913 None:intergenic
TCTGACAATTTCCAGTTGTG+TGG 0.537237 2_3:-9973243 None:intergenic
CTCCGCACTTTCACAACAAG+TGG 0.537755 2_3:-9972847 None:intergenic
CGAAAGATCCACCTGTGTAT+CGG 0.539755 2_3:+9970515 Msa0277420:CDS
GGAACCTTCACCTTCAACAA+TGG 0.539901 2_3:+9970329 Msa0277420:exon
GAAGCGATTGTGGAAGAAGG+TGG 0.540304 2_3:+9971452 Msa0277420:CDS
TGGTTTACAGTCTTCTTCAG+TGG 0.541588 2_3:+9970875 Msa0277420:CDS
AAGAAACTGATATTTAATGC+TGG 0.543549 2_3:+9971080 Msa0277420:CDS
GGTCTGCAGCGGCGAAATTG+AGG 0.543913 2_3:+9970907 Msa0277420:CDS
GAGTGTGACGGTGGAGGTGA+TGG 0.544477 2_3:+9970729 Msa0277420:CDS
ATTGAAGATGGGTCTGTGAA+AGG 0.544960 2_3:+9971497 Msa0277420:CDS
TGAGCAAGGGAATGGGATGA+TGG 0.551467 2_3:+9971379 Msa0277420:CDS
TCTATCGTCGACCTCCGTCT+CGG 0.551730 2_3:+9970552 Msa0277420:CDS
GTTAGCGACGCTGCCGTCAC+CGG 0.552112 2_3:+9970707 Msa0277420:CDS
TGTTGAACCTGAGCCTTGCA+TGG 0.552713 2_3:+9970764 Msa0277420:CDS
GACACAAGAGCACGCGGTGA+CGG 0.556104 2_3:+9971025 Msa0277420:CDS
TCACCGGAGTGTGACGGTGG+AGG 0.558234 2_3:+9970723 Msa0277420:CDS
TGTTGAATGGTTCTAACAGA+GGG 0.562029 2_3:+9971252 Msa0277420:CDS
ACCGTCGGTTGAAGATCCTC+CGG 0.563481 2_3:-9970837 None:intergenic
AACTCCTCGAGCTAAGCATA+AGG 0.564045 2_3:+9971634 Msa0277420:CDS
AGGTGGAATCGCGGCGCTTG+TGG 0.566826 2_3:+9971469 Msa0277420:CDS
ATTGATTATTGTGTATATAG+CGG 0.568579 2_3:+9972421 Msa0277420:three_prime_UTR
TGGTGTGGTGAAGCCGTTGG+TGG 0.571210 2_3:+9971346 Msa0277420:CDS
TGGTGAACACTGAAATATCA+AGG 0.571706 2_3:-9973354 None:intergenic
TGCTGGTGTGGTGAAGCCGT+TGG 0.572004 2_3:+9971343 Msa0277420:CDS
ACGGAGGTCGACGATAGAAT+CGG 0.572944 2_3:-9970547 None:intergenic
TTGTGGAAGCCATTGAAGAT+GGG 0.575508 2_3:+9971486 Msa0277420:CDS
ATATCTCCGGTGAGCTTCAG+AGG 0.576091 2_3:+9970685 Msa0277420:CDS
AGAGGATTGCTTGTTAGAGA+AGG 0.577133 2_3:+9971575 Msa0277420:CDS
TGCGAAAGAGCGACAAGAGG+AGG 0.579038 2_3:-9971605 None:intergenic
GCTTGTGTTTGGTCCTGCGT+CGG 0.580698 2_3:-9972717 None:intergenic
GGCTGTGAAACGGTCTGCAG+CGG 0.585635 2_3:+9970896 Msa0277420:CDS
AGCTGGAATTGACGAAGGGA+AGG 0.585870 2_3:+9971430 Msa0277420:CDS
CCACCGTCACACTCCGGTGA+CGG 0.588930 2_3:-9970720 None:intergenic
CGAAGCAAAGGAACAAGCAA+AGG 0.589643 2_3:-9970987 None:intergenic
GATTATTGAGAGTATTTCGC+CGG 0.592143 2_3:+9970818 Msa0277420:CDS
AGATGGGTCTGTGAAAGGAA+AGG 0.595034 2_3:+9971502 Msa0277420:CDS
GAACACTGAAATATCAAGGC+CGG 0.595039 2_3:-9973350 None:intergenic
GCTTGTAGTAGTGATATCTC+CGG 0.597721 2_3:+9970672 Msa0277420:CDS
GTGTGCTAAACATTCTTGGA+AGG 0.599413 2_3:+9972461 Msa0277420:three_prime_UTR
GCCGGAGGATCTTCAACCGA+CGG 0.599927 2_3:+9970836 Msa0277420:CDS
GCGAGTCTGTAAATTCAGTC+CGG 0.599938 2_3:+9973331 Msa0277420:three_prime_UTR
AACACAACAAATTGGAACAA+GGG 0.602875 2_3:-9972576 None:intergenic
TGGGATGATGGAGAAAGCAA+TGG 0.603285 2_3:+9971391 Msa0277420:CDS
CACTTTCACAACAAGTGGGA+AGG 0.605662 2_3:-9972842 None:intergenic
TCCCACTTGTTGTGAAAGTG+CGG 0.608019 2_3:+9972845 Msa0277420:three_prime_UTR
AGCTTAGCTGGAATTGACGA+AGG 0.609188 2_3:+9971425 Msa0277420:CDS
CGCAGGACCAAACACAAGCA+TGG 0.612428 2_3:+9972721 Msa0277420:three_prime_UTR
AAGCTCAATTGGAGCTTCAG+GGG 0.614032 2_3:+9971205 Msa0277420:CDS
GCTGAAAGTGTTACAAACAG+AGG 0.615497 2_3:+9971557 Msa0277420:CDS
ACAAAGAGAGAATTTCTCGA+CGG 0.618727 2_3:+9970794 Msa0277420:CDS
CTGCCGTCACCGGAGTGTGA+CGG 0.618794 2_3:+9970717 Msa0277420:CDS
TTTACCTTATGCTTAGCTCG+AGG 0.620491 2_3:-9971638 None:intergenic
GAAGCCGTTGGTGGAGCTGG+TGG 0.620509 2_3:+9971355 Msa0277420:CDS
TCATGCTTCAACTACATCCA+CGG 0.621756 2_3:+9972684 Msa0277420:three_prime_UTR
GGATCACTACACCGAAGCAA+AGG 0.624246 2_3:-9970999 None:intergenic
TCACCTCCACCGTCACACTC+CGG 0.625435 2_3:-9970726 None:intergenic
TATTGAGAGTATTTCGCCGG+AGG 0.627403 2_3:+9970821 Msa0277420:CDS
TGGAGCTGGTGGCTGAGCAA+GGG 0.629086 2_3:+9971366 Msa0277420:CDS
TAATCTCAAATTCGTTACAG+TGG 0.630869 2_3:+9970308 Msa0277420:five_prime_UTR
CTGTTGAATGGTTCTAACAG+AGG 0.632453 2_3:+9971251 Msa0277420:CDS
TGGAAGCGAGTTCTCCGAGA+CGG 0.633050 2_3:-9970566 None:intergenic
CGGTGAATGCTTACCGACGC+AGG 0.638951 2_3:+9972704 Msa0277420:three_prime_UTR
TTGAACCTGAGCCTTGCATG+GGG 0.643044 2_3:+9970766 Msa0277420:CDS
AAACACAACAAATTGGAACA+AGG 0.643203 2_3:-9972577 None:intergenic
TCAGCCACCAGCTCCACCAA+CGG 0.648002 2_3:-9971359 None:intergenic
CCGTCACCGGAGTGTGACGG+TGG 0.648753 2_3:+9970720 Msa0277420:CDS
TCCACACAAAGCTTCACCGT+CGG 0.651858 2_3:-9970852 None:intergenic
ACCGACGGTGAAGCTTTGTG+TGG 0.656075 2_3:+9970851 Msa0277420:CDS
TGTGGAAGAAGGTGGAATCG+CGG 0.656823 2_3:+9971460 Msa0277420:CDS
GAGAGCGGTGAGTGCTGGTG+TGG 0.665360 2_3:+9971331 Msa0277420:CDS
TTCTGCGAAAGAGCGACAAG+AGG 0.665494 2_3:-9971608 None:intergenic
TGACGGTGGAGGTGATGGTG+TGG 0.666178 2_3:+9970734 Msa0277420:CDS
GCTTAGCTGGAATTGACGAA+GGG 0.668649 2_3:+9971426 Msa0277420:CDS
CACGCAGTGAGCTAGTGACA+CGG 0.672430 2_3:-9972641 None:intergenic
TTCAACAGAAGCGAAACCAA+CGG 0.673733 2_3:-9971236 None:intergenic
GATGATGGAGAAAGCAATGG+TGG 0.677671 2_3:+9971394 Msa0277420:CDS
TCCGCACTTTCACAACAAGT+GGG 0.679803 2_3:-9972846 None:intergenic
TAAGCAGAACAAAGAGAGAG+CGG 0.683784 2_3:+9971316 Msa0277420:CDS
AAGCGAGTTCTCCGAGACGG+AGG 0.695212 2_3:-9970563 None:intergenic
TCCATGGACACAAGAGCACG+CGG 0.715830 2_3:+9971019 Msa0277420:CDS
AACAGAAGCGAAACCAACGG+TGG 0.719199 2_3:-9971233 None:intergenic
AGAGACTTCTAAGCAGAACG+CGG 0.724526 2_3:+9971142 Msa0277420:CDS
CGTGTCACTAGCTCACTGCG+TGG 0.734195 2_3:+9972642 Msa0277420:three_prime_UTR
GCAGTGAGCTAGTGACACGG+TGG 0.777874 2_3:-9972638 None:intergenic
GCGTCGGTAAGCATTCACCG+TGG 0.796363 2_3:-9972701 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATTAATCTTTATAATAAT+AGG - chr2_3:9972037-9972056 None:intergenic 10.0%
!! ATGAAATGAAATGAAATTAA+AGG - chr2_3:9970133-9970152 None:intergenic 15.0%
!! GTATAATATATATACACAAT+AGG - chr2_3:9971873-9971892 None:intergenic 15.0%
!!! ATTAGGTTTTTAAATTTCTT+TGG + chr2_3:9972765-9972784 Msa0277420:three_prime_UTR 15.0%
!!! TGAATGTTTAGAATAAAATA+TGG + chr2_3:9973153-9973172 Msa0277420:three_prime_UTR 15.0%
!! AATAGATGAATGATATTGAT+AGG - chr2_3:9970406-9970425 None:intergenic 20.0%
!! TTGATTTATGTATTGAAAAC+TGG + chr2_3:9971116-9971135 Msa0277420:CDS 20.0%
!! TGATTTATGTATTGAAAACT+GGG + chr2_3:9971117-9971136 Msa0277420:CDS 20.0%
!! CATTTCATGATTAGAATAAA+GGG - chr2_3:9971783-9971802 None:intergenic 20.0%
!! ACATTTCATGATTAGAATAA+AGG - chr2_3:9971784-9971803 None:intergenic 20.0%
!!! ATAAAGTATTCTAATTGATG+TGG + chr2_3:9972079-9972098 Msa0277420:intron 20.0%
!!! TAATCCTTGAATTTTTCTTT+AGG + chr2_3:9972124-9972143 Msa0277420:intron 20.0%
!! ATTGATTATTGTGTATATAG+CGG + chr2_3:9972421-9972440 Msa0277420:three_prime_UTR 20.0%
! AATGAAATGAAATTAAAGGC+TGG - chr2_3:9970129-9970148 None:intergenic 25.0%
! TAATGGAAAACGATTTGAAT+TGG - chr2_3:9970376-9970395 None:intergenic 25.0%
!!! TATTGATAGGTTTTTGGTAA+TGG - chr2_3:9970393-9970412 None:intergenic 25.0%
!! GAATGATATTGATAGGTTTT+TGG - chr2_3:9970399-9970418 None:intergenic 25.0%
! AAGAAACTGATATTTAATGC+TGG + chr2_3:9971080-9971099 Msa0277420:CDS 25.0%
!! AATAAACCTTTTGAATCCTA+TGG - chr2_3:9971690-9971709 None:intergenic 25.0%
! TCAAGATATCTTAAATAACC+AGG - chr2_3:9971746-9971765 None:intergenic 25.0%
! ATATACATATGAGGAAAAAC+AGG - chr2_3:9971818-9971837 None:intergenic 25.0%
! TTTCAGCATATATACATATG+AGG - chr2_3:9971827-9971846 None:intergenic 25.0%
! AATGCCTAAAGAAAAATTCA+AGG - chr2_3:9972131-9972150 None:intergenic 25.0%
! AGAGAACTTAATGAATTAAC+AGG - chr2_3:9972272-9972291 None:intergenic 25.0%
!!! ATTTTGGTTATTAGTTAGGA+AGG + chr2_3:9972383-9972402 Msa0277420:three_prime_UTR 25.0%
! TTAAAAACCTAATCAACCAA+AGG - chr2_3:9972758-9972777 None:intergenic 25.0%
!! CAAACATACACATATTTTCA+TGG + chr2_3:9973077-9973096 Msa0277420:three_prime_UTR 25.0%
!! ACCAGAAACTTGTAATATTT+TGG + chr2_3:9973213-9973232 Msa0277420:three_prime_UTR 25.0%
! CTGTAACGAATTTGAGATTA+GGG - chr2_3:9970308-9970327 None:intergenic 30.0%
! ACTGTAACGAATTTGAGATT+AGG - chr2_3:9970309-9970328 None:intergenic 30.0%
TAATCTCAAATTCGTTACAG+TGG + chr2_3:9970308-9970327 Msa0277420:five_prime_UTR 30.0%
GAAGAGAATAAAAGCTCAAT+TGG + chr2_3:9971194-9971213 Msa0277420:CDS 30.0%
TTCATACCATAGGATTCAAA+AGG + chr2_3:9971681-9971700 Msa0277420:intron 30.0%
! TTAGTAATTTTATGACCACC+TGG + chr2_3:9971725-9971744 Msa0277420:intron 30.0%
AGATATCTTAAATAACCAGG+TGG - chr2_3:9971743-9971762 None:intergenic 30.0%
ATATCTTGACTTTGAGTGTT+TGG + chr2_3:9971757-9971776 Msa0277420:intron 30.0%
TAATAAACCTCGACAAGAAA+AGG + chr2_3:9971906-9971925 Msa0277420:intron 30.0%
AATAAACCTCGACAAGAAAA+GGG + chr2_3:9971907-9971926 Msa0277420:intron 30.0%
! TTTTTGTGGAAGAATAGATC+TGG + chr2_3:9972228-9972247 Msa0277420:intron 30.0%
! AGAGAAGTAATTGCGTATTT+TGG + chr2_3:9972367-9972386 Msa0277420:exon 30.0%
!!! GCGTATTTTGGTTATTAGTT+AGG + chr2_3:9972379-9972398 Msa0277420:three_prime_UTR 30.0%
AGCTATATTCATGCATCTAA+AGG - chr2_3:9972537-9972556 None:intergenic 30.0%
TTAGATGCATGAATATAGCT+AGG + chr2_3:9972537-9972556 Msa0277420:three_prime_UTR 30.0%
AACACAACAAATTGGAACAA+GGG - chr2_3:9972579-9972598 None:intergenic 30.0%
AAACACAACAAATTGGAACA+AGG - chr2_3:9972580-9972599 None:intergenic 30.0%
AATTTAACCAAAAGGAGCTA+TGG - chr2_3:9972916-9972935 None:intergenic 30.0%
!! ATAGCTCCTTTTGGTTAAAT+TGG + chr2_3:9972915-9972934 Msa0277420:three_prime_UTR 30.0%
GCCAAAATATTACAAGTTTC+TGG - chr2_3:9973217-9973236 None:intergenic 30.0%
TATCTGATCTTTCAATAGCT+TGG - chr2_3:9973377-9973396 None:intergenic 30.0%
TAGTGAGAAAAAAGTGAGTG+TGG - chr2_3:9970242-9970261 None:intergenic 35.0%
TCTAGAGAAACCATTGTTGA+AGG - chr2_3:9970342-9970361 None:intergenic 35.0%
TCAAAATCACAGCGAAACAT+AGG + chr2_3:9970429-9970448 Msa0277420:CDS 35.0%
GTTATCTTCATCGAAGATAC+TGG - chr2_3:9970478-9970497 None:intergenic 35.0%
! TTTTCCGGATTTGTGATTCT+TGG - chr2_3:9970589-9970608 None:intergenic 35.0%
!!! TTCGGAAGTTGATGATTTTC+CGG - chr2_3:9970604-9970623 None:intergenic 35.0%
!! AAGATCTAGAAGGTCTTGTT+CGG - chr2_3:9970622-9970641 None:intergenic 35.0%
AAGCTTGAGAAAGATCTAGA+AGG - chr2_3:9970632-9970651 None:intergenic 35.0%
ACAAAGAGAGAATTTCTCGA+CGG + chr2_3:9970794-9970813 Msa0277420:CDS 35.0%
!! GATTATTGAGAGTATTTCGC+CGG + chr2_3:9970818-9970837 Msa0277420:CDS 35.0%
!!! GCTGATAATCGTGTTTTGAT+TGG + chr2_3:9970948-9970967 Msa0277420:CDS 35.0%
!! TGTTGAATGGTTCTAACAGA+GGG + chr2_3:9971252-9971271 Msa0277420:CDS 35.0%
! TGCATTTTGCTTCATACCAT+AGG + chr2_3:9971671-9971690 Msa0277420:intron 35.0%
TTAACTGTCAGTCAACATCT+GGG + chr2_3:9972009-9972028 Msa0277420:intron 35.0%
TTTCTCTCTATCATTGCTCT+TGG + chr2_3:9972201-9972220 Msa0277420:intron 35.0%
!!! TTGCTCTTGGCTATTTTTTG+TGG + chr2_3:9972214-9972233 Msa0277420:intron 35.0%
!!! AGTTCTCTGTTTTGTTTTGC+AGG + chr2_3:9972284-9972303 Msa0277420:intron 35.0%
TACAGTGTGCTAAACATTCT+TGG + chr2_3:9972457-9972476 Msa0277420:three_prime_UTR 35.0%
TGCATGAATATAGCTAGGTT+TGG + chr2_3:9972542-9972561 Msa0277420:three_prime_UTR 35.0%
!! TTCCAATTTGTTGTGTTTCC+AGG + chr2_3:9972582-9972601 Msa0277420:three_prime_UTR 35.0%
! AAACCCTTTTCCCAAAACTA+GGG - chr2_3:9972800-9972819 None:intergenic 35.0%
CAAGCTCCAATTTAACCAAA+AGG - chr2_3:9972924-9972943 None:intergenic 35.0%
GAGTATCAGATATGGTATTC+TGG - chr2_3:9973103-9973122 None:intergenic 35.0%
TCACGAAATATCAGTGTGAA+TGG + chr2_3:9973125-9973144 Msa0277420:three_prime_UTR 35.0%
TATGTGTTCTTGACAAAAGC+AGG + chr2_3:9973188-9973207 Msa0277420:three_prime_UTR 35.0%
TGGTGAACACTGAAATATCA+AGG - chr2_3:9973357-9973376 None:intergenic 35.0%
GAAACCATTGTTGAAGGTGA+AGG - chr2_3:9970336-9970355 None:intergenic 40.0%
GCTTCCAAGAATCACAAATC+CGG + chr2_3:9970582-9970601 Msa0277420:CDS 40.0%
GCTTGTAGTAGTGATATCTC+CGG + chr2_3:9970672-9970691 Msa0277420:CDS 40.0%
CTTTGTAAAAACCCCATGCA+AGG - chr2_3:9970780-9970799 None:intergenic 40.0%
TGGTTTACAGTCTTCTTCAG+TGG + chr2_3:9970875-9970894 Msa0277420:CDS 40.0%
!!! CGTGTTTTGATTGGTGAATC+AGG + chr2_3:9970957-9970976 Msa0277420:CDS 40.0%
CTTTGCTTGTTCCTTTGCTT+CGG + chr2_3:9970988-9971007 Msa0277420:CDS 40.0%
!!! TGCTCTTTTGAGTTTAGCGT+TGG + chr2_3:9971169-9971188 Msa0277420:CDS 40.0%
!!! TCTTTTGAGTTTAGCGTTGG+TGG + chr2_3:9971172-9971191 Msa0277420:CDS 40.0%
AAAAGCTCAATTGGAGCTTC+AGG + chr2_3:9971203-9971222 Msa0277420:CDS 40.0%
AAAGCTCAATTGGAGCTTCA+GGG + chr2_3:9971204-9971223 Msa0277420:CDS 40.0%
TTCAACAGAAGCGAAACCAA+CGG - chr2_3:9971239-9971258 None:intergenic 40.0%
TTGGTTTCGCTTCTGTTGAA+TGG + chr2_3:9971239-9971258 Msa0277420:CDS 40.0%
!! CTGTTGAATGGTTCTAACAG+AGG + chr2_3:9971251-9971270 Msa0277420:CDS 40.0%
TAAGCAGAACAAAGAGAGAG+CGG + chr2_3:9971316-9971335 Msa0277420:CDS 40.0%
TTGTGGAAGCCATTGAAGAT+GGG + chr2_3:9971486-9971505 Msa0277420:CDS 40.0%
TTTCACAGACCCATCTTCAA+TGG - chr2_3:9971498-9971517 None:intergenic 40.0%
ATTGAAGATGGGTCTGTGAA+AGG + chr2_3:9971497-9971516 Msa0277420:CDS 40.0%
!! GCTGAAAGTGTTACAAACAG+AGG + chr2_3:9971557-9971576 Msa0277420:CDS 40.0%
! AGAGGATTGCTTGTTAGAGA+AGG + chr2_3:9971575-9971594 Msa0277420:CDS 40.0%
! GATTGCTTGTTAGAGAAGGT+GGG + chr2_3:9971579-9971598 Msa0277420:CDS 40.0%
TTTACCTTATGCTTAGCTCG+AGG - chr2_3:9971641-9971660 None:intergenic 40.0%
CTTAACTGTCAGTCAACATC+TGG + chr2_3:9972008-9972027 Msa0277420:intron 40.0%
CTAATTGATGTGGCTGAATG+AGG + chr2_3:9972089-9972108 Msa0277420:intron 40.0%
GTGTGCTAAACATTCTTGGA+AGG + chr2_3:9972461-9972480 Msa0277420:three_prime_UTR 40.0%
CTCCTGGAAACACAACAAAT+TGG - chr2_3:9972587-9972606 None:intergenic 40.0%
TTGTGTTTCCAGGAGTTACA+TGG + chr2_3:9972592-9972611 Msa0277420:three_prime_UTR 40.0%
TCATGCTTCAACTACATCCA+CGG + chr2_3:9972684-9972703 Msa0277420:three_prime_UTR 40.0%
AAGACAACCATGCTTGTGTT+TGG - chr2_3:9972731-9972750 None:intergenic 40.0%
CTTTGAGCCTTTGGTTGATT+AGG + chr2_3:9972748-9972767 Msa0277420:three_prime_UTR 40.0%
!! GTACAGATGACCCTAGTTTT+GGG + chr2_3:9972787-9972806 Msa0277420:three_prime_UTR 40.0%
!!! ATGACCCTAGTTTTGGGAAA+AGG + chr2_3:9972793-9972812 Msa0277420:three_prime_UTR 40.0%
!!! TGACCCTAGTTTTGGGAAAA+GGG + chr2_3:9972794-9972813 Msa0277420:three_prime_UTR 40.0%
! GAAACCCTTTTCCCAAAACT+AGG - chr2_3:9972801-9972820 None:intergenic 40.0%
AACAGATGAAGCTGAGTAAC+TGG - chr2_3:9972994-9973013 None:intergenic 40.0%
! TCGTGACAGAGTATCAGATA+TGG - chr2_3:9973111-9973130 None:intergenic 40.0%
! TTGGCATTTTTCCACACAAC+TGG + chr2_3:9973232-9973251 Msa0277420:three_prime_UTR 40.0%
TCTGACAATTTCCAGTTGTG+TGG - chr2_3:9973246-9973265 None:intergenic 40.0%
GAACACTGAAATATCAAGGC+CGG - chr2_3:9973353-9973372 None:intergenic 40.0%
GGAACCTTCACCTTCAACAA+TGG + chr2_3:9970329-9970348 Msa0277420:exon 45.0%
ACTGGATCTTCTTGTTCGCA+TGG - chr2_3:9970460-9970479 None:intergenic 45.0%
CGATACACAGGTGGATCTTT+CGG - chr2_3:9970517-9970536 None:intergenic 45.0%
CGAAAGATCCACCTGTGTAT+CGG + chr2_3:9970515-9970534 Msa0277420:CDS 45.0%
! GAGATTTTCCGATACACAGG+TGG - chr2_3:9970526-9970545 None:intergenic 45.0%
! GGTGAGATTTTCCGATACAC+AGG - chr2_3:9970529-9970548 None:intergenic 45.0%
!! TATTGAGAGTATTTCGCCGG+AGG + chr2_3:9970821-9970840 Msa0277420:CDS 45.0%
CTTCTTCAGTGGCTGTGAAA+CGG + chr2_3:9970886-9970905 Msa0277420:CDS 45.0%
CGAAGCAAAGGAACAAGCAA+AGG - chr2_3:9970990-9971009 None:intergenic 45.0%
AGAGACTTCTAAGCAGAACG+CGG + chr2_3:9971142-9971161 Msa0277420:CDS 45.0%
AAGCTCAATTGGAGCTTCAG+GGG + chr2_3:9971205-9971224 Msa0277420:CDS 45.0%
!! TGGGATGATGGAGAAAGCAA+TGG + chr2_3:9971391-9971410 Msa0277420:CDS 45.0%
!! GATGATGGAGAAAGCAATGG+TGG + chr2_3:9971394-9971413 Msa0277420:CDS 45.0%
! GTGGTGTTGAATAGCTTAGC+TGG + chr2_3:9971413-9971432 Msa0277420:CDS 45.0%
AGCTTAGCTGGAATTGACGA+AGG + chr2_3:9971425-9971444 Msa0277420:CDS 45.0%
GCTTAGCTGGAATTGACGAA+GGG + chr2_3:9971426-9971445 Msa0277420:CDS 45.0%
AAGGAAGCGATTGTGGAAGA+AGG + chr2_3:9971449-9971468 Msa0277420:CDS 45.0%
CTTGTGGAAGCCATTGAAGA+TGG + chr2_3:9971485-9971504 Msa0277420:CDS 45.0%
AGATGGGTCTGTGAAAGGAA+AGG + chr2_3:9971502-9971521 Msa0277420:CDS 45.0%
! GGATTGCTTGTTAGAGAAGG+TGG + chr2_3:9971578-9971597 Msa0277420:CDS 45.0%
AACTCCTCGAGCTAAGCATA+AGG + chr2_3:9971634-9971653 Msa0277420:CDS 45.0%
! AGAAGACCCTTTTCTTGTCG+AGG - chr2_3:9971916-9971935 None:intergenic 45.0%
TGTGTATATAGCGGCTTTGC+TGG + chr2_3:9972430-9972449 Msa0277420:three_prime_UTR 45.0%
CATGGTTGTCTTTGAGCCTT+TGG + chr2_3:9972739-9972758 Msa0277420:three_prime_UTR 45.0%
! GGTACAGATGACCCTAGTTT+TGG + chr2_3:9972786-9972805 Msa0277420:three_prime_UTR 45.0%
CACTTTCACAACAAGTGGGA+AGG - chr2_3:9972845-9972864 None:intergenic 45.0%
!! TCCCACTTGTTGTGAAAGTG+CGG + chr2_3:9972845-9972864 Msa0277420:three_prime_UTR 45.0%
TCCGCACTTTCACAACAAGT+GGG - chr2_3:9972849-9972868 None:intergenic 45.0%
! CCAGATAGCAGTGAAGTACT+AGG - chr2_3:9972880-9972899 None:intergenic 45.0%
CCTAGTACTTCACTGCTATC+TGG + chr2_3:9972877-9972896 Msa0277420:three_prime_UTR 45.0%
! TCTGTGTCCATAGCTCCTTT+TGG + chr2_3:9972906-9972925 Msa0277420:three_prime_UTR 45.0%
GCGAGTCTGTAAATTCAGTC+CGG + chr2_3:9973331-9973350 Msa0277420:three_prime_UTR 45.0%
ACGGAGGTCGACGATAGAAT+CGG - chr2_3:9970550-9970569 None:intergenic 50.0%
ATATCTCCGGTGAGCTTCAG+AGG + chr2_3:9970685-9970704 Msa0277420:CDS 50.0%
TGTTGAACCTGAGCCTTGCA+TGG + chr2_3:9970764-9970783 Msa0277420:CDS 50.0%
GTTGAACCTGAGCCTTGCAT+GGG + chr2_3:9970765-9970784 Msa0277420:CDS 50.0%
TTGAACCTGAGCCTTGCATG+GGG + chr2_3:9970766-9970785 Msa0277420:CDS 50.0%
AAAAACCCCATGCAAGGCTC+AGG - chr2_3:9970774-9970793 None:intergenic 50.0%
TCCACACAAAGCTTCACCGT+CGG - chr2_3:9970855-9970874 None:intergenic 50.0%
! ACGGTGAAGCTTTGTGTGGA+TGG + chr2_3:9970855-9970874 Msa0277420:CDS 50.0%
GGATCACTACACCGAAGCAA+AGG - chr2_3:9971002-9971021 None:intergenic 50.0%
! TGCTTCGGTGTAGTGATCCA+TGG + chr2_3:9971003-9971022 Msa0277420:CDS 50.0%
AACAGAAGCGAAACCAACGG+TGG - chr2_3:9971236-9971255 None:intergenic 50.0%
TGAGCAAGGGAATGGGATGA+TGG + chr2_3:9971379-9971398 Msa0277420:CDS 50.0%
AGCTGGAATTGACGAAGGGA+AGG + chr2_3:9971430-9971449 Msa0277420:CDS 50.0%
GAAGCGATTGTGGAAGAAGG+TGG + chr2_3:9971452-9971471 Msa0277420:CDS 50.0%
TGTGGAAGAAGGTGGAATCG+CGG + chr2_3:9971460-9971479 Msa0277420:CDS 50.0%
TTCTGCGAAAGAGCGACAAG+AGG - chr2_3:9971611-9971630 None:intergenic 50.0%
CTTGTCGCTCTTTCGCAGAA+TGG + chr2_3:9971611-9971630 Msa0277420:CDS 50.0%
AACACACGCCATGTAACTCC+TGG - chr2_3:9972603-9972622 None:intergenic 50.0%
GGAGTTACATGGCGTGTGTT+TGG + chr2_3:9972603-9972622 Msa0277420:three_prime_UTR 50.0%
! AGCTAGTGACACGGTGGATT+CGG - chr2_3:9972635-9972654 None:intergenic 50.0%
CTCCGCACTTTCACAACAAG+TGG - chr2_3:9972850-9972869 None:intergenic 50.0%
TCTATCGTCGACCTCCGTCT+CGG + chr2_3:9970552-9970571 Msa0277420:CDS 55.0%
TGGAAGCGAGTTCTCCGAGA+CGG - chr2_3:9970569-9970588 None:intergenic 55.0%
!! CGCTAACCTCTGAAGCTCAC+CGG - chr2_3:9970694-9970713 None:intergenic 55.0%
! ACCGTCGGTTGAAGATCCTC+CGG - chr2_3:9970840-9970859 None:intergenic 55.0%
! ACCGACGGTGAAGCTTTGTG+TGG + chr2_3:9970851-9970870 Msa0277420:CDS 55.0%
! TCCATGGACACAAGAGCACG+CGG + chr2_3:9971019-9971038 Msa0277420:CDS 55.0%
AAAGAGAGAGCGGTGAGTGC+TGG + chr2_3:9971326-9971345 Msa0277420:CDS 55.0%
TGGTGGCTGAGCAAGGGAAT+GGG + chr2_3:9971372-9971391 Msa0277420:CDS 55.0%
CGAAGGGAAGGAAGCGATTG+TGG + chr2_3:9971442-9971461 Msa0277420:CDS 55.0%
TGCGAAAGAGCGACAAGAGG+AGG - chr2_3:9971608-9971627 None:intergenic 55.0%
CACGCAGTGAGCTAGTGACA+CGG - chr2_3:9972644-9972663 None:intergenic 55.0%
GCTTGTGTTTGGTCCTGCGT+CGG - chr2_3:9972720-9972739 None:intergenic 55.0%
CGCAGGACCAAACACAAGCA+TGG + chr2_3:9972721-9972740 Msa0277420:three_prime_UTR 55.0%
AAGCGAGTTCTCCGAGACGG+AGG - chr2_3:9970566-9970585 None:intergenic 60.0%
TCACCTCCACCGTCACACTC+CGG - chr2_3:9970729-9970748 None:intergenic 60.0%
GAGTGTGACGGTGGAGGTGA+TGG + chr2_3:9970729-9970748 Msa0277420:CDS 60.0%
! TGACGGTGGAGGTGATGGTG+TGG + chr2_3:9970734-9970753 Msa0277420:CDS 60.0%
GCCGGAGGATCTTCAACCGA+CGG + chr2_3:9970836-9970855 Msa0277420:CDS 60.0%
GGCTGTGAAACGGTCTGCAG+CGG + chr2_3:9970896-9970915 Msa0277420:CDS 60.0%
GGTCTGCAGCGGCGAAATTG+AGG + chr2_3:9970907-9970926 Msa0277420:CDS 60.0%
ACCGCGTGCTCTTGTGTCCA+TGG - chr2_3:9971023-9971042 None:intergenic 60.0%
! GACACAAGAGCACGCGGTGA+CGG + chr2_3:9971025-9971044 Msa0277420:CDS 60.0%
TTCAGGGGCGATTCCACCGT+TGG + chr2_3:9971220-9971239 Msa0277420:CDS 60.0%
TGCTGGTGTGGTGAAGCCGT+TGG + chr2_3:9971343-9971362 Msa0277420:CDS 60.0%
TGGTGTGGTGAAGCCGTTGG+TGG + chr2_3:9971346-9971365 Msa0277420:CDS 60.0%
TCAGCCACCAGCTCCACCAA+CGG - chr2_3:9971362-9971381 None:intergenic 60.0%
TGGAGCTGGTGGCTGAGCAA+GGG + chr2_3:9971366-9971385 Msa0277420:CDS 60.0%
CTGGTGGCTGAGCAAGGGAA+TGG + chr2_3:9971371-9971390 Msa0277420:CDS 60.0%
GCAGTGAGCTAGTGACACGG+TGG - chr2_3:9972641-9972660 None:intergenic 60.0%
! CGTGTCACTAGCTCACTGCG+TGG + chr2_3:9972642-9972661 Msa0277420:three_prime_UTR 60.0%
! GCGTCGGTAAGCATTCACCG+TGG - chr2_3:9972704-9972723 None:intergenic 60.0%
CGGTGAATGCTTACCGACGC+AGG + chr2_3:9972704-9972723 Msa0277420:three_prime_UTR 60.0%
GTTAGCGACGCTGCCGTCAC+CGG + chr2_3:9970707-9970726 Msa0277420:CDS 65.0%
CTGCCGTCACCGGAGTGTGA+CGG + chr2_3:9970717-9970736 Msa0277420:CDS 65.0%
CCACCGTCACACTCCGGTGA+CGG - chr2_3:9970723-9970742 None:intergenic 65.0%
TCACCGGAGTGTGACGGTGG+AGG + chr2_3:9970723-9970742 Msa0277420:CDS 65.0%
!! GAGAGCGGTGAGTGCTGGTG+TGG + chr2_3:9971331-9971350 Msa0277420:CDS 65.0%
! GGTGAAGCCGTTGGTGGAGC+TGG + chr2_3:9971352-9971371 Msa0277420:CDS 65.0%
! GAAGCCGTTGGTGGAGCTGG+TGG + chr2_3:9971355-9971374 Msa0277420:CDS 65.0%
GTGGAGCTGGTGGCTGAGCA+AGG + chr2_3:9971365-9971384 Msa0277420:CDS 65.0%
AGGTGGAATCGCGGCGCTTG+TGG + chr2_3:9971469-9971488 Msa0277420:CDS 65.0%
CCGTCACCGGAGTGTGACGG+TGG + chr2_3:9970720-9970739 Msa0277420:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 9970114 9973413 9970114 ID=Msa0277420;Name=Msa0277420
chr2_3 mRNA 9970114 9973413 9970114 ID=Msa0277420-mRNA-1;Parent=Msa0277420;Name=Msa0277420-mRNA-1;_AED=0.00;_eAED=0.00;_QI=234|1|1|1|1|1|2|1045|456
chr2_3 exon 9970114 9971655 9970114 ID=Msa0277420-mRNA-1:exon:4416;Parent=Msa0277420-mRNA-1
chr2_3 exon 9972306 9973413 9972306 ID=Msa0277420-mRNA-1:exon:4417;Parent=Msa0277420-mRNA-1
chr2_3 five_prime_UTR 9970114 9970347 9970114 ID=Msa0277420-mRNA-1:five_prime_utr;Parent=Msa0277420-mRNA-1
chr2_3 CDS 9970348 9971655 9970348 ID=Msa0277420-mRNA-1:cds;Parent=Msa0277420-mRNA-1
chr2_3 CDS 9972306 9972368 9972306 ID=Msa0277420-mRNA-1:cds;Parent=Msa0277420-mRNA-1
chr2_3 three_prime_UTR 9972369 9973413 9972369 ID=Msa0277420-mRNA-1:three_prime_utr;Parent=Msa0277420-mRNA-1
Gene Sequence

>Msa0277420

ATGGTTTCTCTAGAAGATTCTCGTTCCAATTCAAATCGTTTTCCATTACCAAAAACCTATCAATATCATTCATCTATTTCTTCAAAATCACAGCGAAACATAGGAAGATCCATGCGAACAAGAAGATCCAGTATCTTCGATGAAGATAACAGTAGCTGCACTTTCACCGAAAGATCCACCTGTGTATCGGAAAATCTCACCGATTCTATCGTCGACCTCCGTCTCGGAGAACTCGCTTCCAAGAATCACAAATCCGGAAAATCATCAACTTCCGAACAAGACCTTCTAGATCTTTCTCAAGCTTTTAGTGAATATGCTTATTCAGCTTGTAGTAGTGATATCTCCGGTGAGCTTCAGAGGTTAGCGACGCTGCCGTCACCGGAGTGTGACGGTGGAGGTGATGGTGTGGTTGAAGTTGTTGAACCTGAGCCTTGCATGGGGTTTTTACAAAGAGAGAATTTCTCGACGGAGATTATTGAGAGTATTTCGCCGGAGGATCTTCAACCGACGGTGAAGCTTTGTGTGGATGGTTTACAGTCTTCTTCAGTGGCTGTGAAACGGTCTGCAGCGGCGAAATTGAGGTTGCTTGCGAAGAATCGAGCTGATAATCGTGTTTTGATTGGTGAATCAGGTGCTGTACCTTTGCTTGTTCCTTTGCTTCGGTGTAGTGATCCATGGACACAAGAGCACGCGGTGACGGCGTTGTTGAATCTTTCTCTTCATGAAGATAACAAGAAACTGATATTTAATGCTGGAGCTGTGAAATCGTTGATTTATGTATTGAAAACTGGGACAGAGACTTCTAAGCAGAACGCGGCTTGTGCTCTTTTGAGTTTAGCGTTGGTGGAAGAGAATAAAAGCTCAATTGGAGCTTCAGGGGCGATTCCACCGTTGGTTTCGCTTCTGTTGAATGGTTCTAACAGAGGGAAGAAAGATGCATTAACGACGTTGTACAAGCTTTGTTCTGTTAAGCAGAACAAAGAGAGAGCGGTGAGTGCTGGTGTGGTGAAGCCGTTGGTGGAGCTGGTGGCTGAGCAAGGGAATGGGATGATGGAGAAAGCAATGGTGGTGTTGAATAGCTTAGCTGGAATTGACGAAGGGAAGGAAGCGATTGTGGAAGAAGGTGGAATCGCGGCGCTTGTGGAAGCCATTGAAGATGGGTCTGTGAAAGGAAAGGAATTTGCTGTTTTAACACTTTTGCAGCTTTGTGCTGAAAGTGTTACAAACAGAGGATTGCTTGTTAGAGAAGGTGGGATTCCTCCTCTTGTCGCTCTTTCGCAGAATGGAACTCCTCGAGCTAAGCATAAGGCTGAGACGCTTCTTCGATATTTGCGAGAATCAAGACAAGAAGCATCAACTTCAACTTCGTAG

Protein sequence

>Msa0277420

MVSLEDSRSNSNRFPLPKTYQYHSSISSKSQRNIGRSMRTRRSSIFDEDNSSCTFTERSTCVSENLTDSIVDLRLGELASKNHKSGKSSTSEQDLLDLSQAFSEYAYSACSSDISGELQRLATLPSPECDGGGDGVVEVVEPEPCMGFLQRENFSTEIIESISPEDLQPTVKLCVDGLQSSSVAVKRSAAAKLRLLAKNRADNRVLIGESGAVPLLVPLLRCSDPWTQEHAVTALLNLSLHEDNKKLIFNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSNRGKKDALTTLYKLCSVKQNKERAVSAGVVKPLVELVAEQGNGMMEKAMVVLNSLAGIDEGKEAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVTNRGLLVREGGIPPLVALSQNGTPRAKHKAETLLRYLRESRQEASTSTS*