Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475140 | XP_039687674.1 | 98.645 | 369 | 5 | 0 | 1 | 369 | 1 | 369 | 0.0 | 762 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475140 | G7J3W3 | 98.645 | 369 | 5 | 0 | 1 | 369 | 1 | 369 | 0.0 | 762 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0379170 | Msa0475140 | 0.888506 | 5.558962e-73 | -8.615850e-47 |
| Msa0428760 | Msa0475140 | 0.867173 | 1.663274e-65 | -8.615850e-47 |
| Msa0475140 | Msa0497120 | 0.807128 | 5.878908e-50 | -8.615850e-47 |
| Msa0475140 | Msa0800490 | 0.800319 | 1.523626e-48 | -8.615850e-47 |
| Msa0475140 | Msa0848270 | 0.804500 | 2.096808e-49 | -8.615850e-47 |
| Msa0475140 | Msa1137210 | 0.823919 | 1.068691e-53 | -8.615850e-47 |
| Msa0475140 | Msa1162870 | 0.813947 | 1.977911e-51 | -8.615850e-47 |
| Msa0475140 | Msa1399030 | 0.807873 | 4.085212e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475140 | MtrunA17_Chr3g0132211 | 98.645 | 369 | 5 | 0 | 1 | 369 | 1 | 369 | 0.0 | 762 |
| Msa0475140 | MtrunA17_Chr4g0057361 | 72.460 | 374 | 73 | 7 | 1 | 365 | 1 | 353 | 0.0 | 533 |
| Msa0475140 | MtrunA17_Chr4g0057931 | 71.067 | 356 | 78 | 6 | 13 | 360 | 6 | 344 | 1.10e-175 | 492 |
| Msa0475140 | MtrunA17_Chr2g0302241 | 98.222 | 225 | 4 | 0 | 1 | 225 | 1 | 225 | 6.24e-164 | 457 |
| Msa0475140 | MtrunA17_Chr2g0302251 | 100.000 | 79 | 0 | 0 | 291 | 369 | 1 | 79 | 2.85e-52 | 168 |
| Msa0475140 | MtrunA17_Chr8g0374071 | 30.198 | 202 | 124 | 5 | 166 | 355 | 181 | 377 | 2.41e-18 | 87.0 |
| Msa0475140 | MtrunA17_Chr8g0374091 | 29.703 | 202 | 125 | 5 | 166 | 355 | 181 | 377 | 2.94e-18 | 86.7 |
| Msa0475140 | MtrunA17_Chr1g0203981 | 29.167 | 192 | 114 | 7 | 181 | 357 | 174 | 358 | 5.79e-17 | 82.4 |
| Msa0475140 | MtrunA17_Chr6g0474301 | 29.146 | 199 | 122 | 7 | 181 | 367 | 172 | 363 | 1.92e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475140 | AT2G23520.1 | 29.208 | 202 | 126 | 5 | 166 | 355 | 182 | 378 | 3.03e-18 | 87.0 |
| Msa0475140 | AT5G66950.1 | 32.597 | 181 | 105 | 6 | 187 | 355 | 201 | 376 | 3.57e-18 | 86.7 |
| Msa0475140 | AT5G51920.1 | 27.615 | 239 | 140 | 9 | 137 | 357 | 128 | 351 | 4.00e-17 | 83.2 |
| Msa0475140 | AT4G37100.1 | 28.713 | 202 | 127 | 6 | 166 | 355 | 186 | 382 | 4.08e-17 | 83.6 |
| Msa0475140 | AT4G22980.1 | 30.055 | 183 | 113 | 5 | 185 | 357 | 153 | 330 | 5.50e-15 | 76.6 |
Find 85 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATCAACCTTGAATATTC+TGG | 0.214881 | 3_3:+78210728 | None:intergenic |
| TGGTTGGACTTGAGGATTAA+AGG | 0.225306 | 3_3:-78210254 | Msa0475140:CDS |
| AGAAAGTTACCCTTTCATTA+AGG | 0.229969 | 3_3:-78210372 | Msa0475140:CDS |
| ATCAAACAGCATGGTCTTAA+AGG | 0.234277 | 3_3:-78210987 | Msa0475140:intron |
| AGGATTCCTTTCTGACTAAA+AGG | 0.251516 | 3_3:+78209967 | None:intergenic |
| GGCACTGAAAAGTATTAGTA+TGG | 0.260430 | 3_3:-78211256 | Msa0475140:exon |
| AGGATTGGAATTAGTGTTAC+TGG | 0.261905 | 3_3:+78210004 | None:intergenic |
| TCAACATATTCCATTTCTTT+TGG | 0.272659 | 3_3:+78210773 | None:intergenic |
| AACAAGAAATCCTCATTTAC+TGG | 0.292904 | 3_3:-78210518 | Msa0475140:CDS |
| ATCTTGACCCTGTCAGATTC+AGG | 0.301378 | 3_3:+78210575 | None:intergenic |
| CTCAGTTAAGTCAAAACTTT+AGG | 0.307220 | 3_3:-78210229 | Msa0475140:CDS |
| CCTAATACCTTATAAAATCT+TGG | 0.318166 | 3_3:+78211277 | None:intergenic |
| GAAAGTTACCCTTTCATTAA+GGG | 0.324695 | 3_3:-78210371 | Msa0475140:CDS |
| AGAAATTCAAGCTCAAAATA+AGG | 0.326982 | 3_3:-78210477 | Msa0475140:CDS |
| AGGTTCTTCATTGATGATAA+AGG | 0.352472 | 3_3:+78210676 | None:intergenic |
| CTCAAGTCCAACCAAGTCTT+TGG | 0.354864 | 3_3:+78210263 | None:intergenic |
| TGAAGAACCTTTAGATGAAA+AGG | 0.360026 | 3_3:-78210663 | Msa0475140:CDS |
| GGATAAGAGAATAAGCCTTT+TGG | 0.370572 | 3_3:+78210188 | None:intergenic |
| TTGATTGAAGGAGATGGAAA+TGG | 0.386242 | 3_3:-78210713 | Msa0475140:CDS |
| GGTTGGACTTGAGGATTAAA+GGG | 0.390781 | 3_3:-78210253 | Msa0475140:CDS |
| TCCAATCACACCAAAAGAAA+TGG | 0.396737 | 3_3:-78210783 | Msa0475140:CDS |
| AGACTACAGATCACAAAATC+AGG | 0.400820 | 3_3:+78210044 | None:intergenic |
| GCAAGTAATTCTTGAAGGAT+TGG | 0.414717 | 3_3:+78209989 | None:intergenic |
| ATCTTCTTCTTGATCAAGAA+TGG | 0.426120 | 3_3:+78210334 | None:intergenic |
| CAGAAGCTCACAGGAACAAT+TGG | 0.426312 | 3_3:-78210133 | Msa0475140:CDS |
| GATTCTTCTTCATATACATT+TGG | 0.428676 | 3_3:-78210608 | Msa0475140:CDS |
| CTAATACCTTATAAAATCTT+GGG | 0.442998 | 3_3:+78211278 | None:intergenic |
| GATGCCTCTGCTTATGTAGT+TGG | 0.445059 | 3_3:-78210098 | Msa0475140:CDS |
| CTTCTGAAATTTCATGCTCC+TGG | 0.446468 | 3_3:+78211223 | None:intergenic |
| CAAAGTATCCAGAATATTCA+AGG | 0.446957 | 3_3:-78210736 | Msa0475140:CDS |
| CACATCAGCTGCTTCATCTC+AGG | 0.449866 | 3_3:-78209940 | Msa0475140:CDS |
| AAAAGGCAAGTAATTCTTGA+AGG | 0.449971 | 3_3:+78209984 | None:intergenic |
| TGATTGAAGGAGATGGAAAT+GGG | 0.449991 | 3_3:-78210712 | Msa0475140:CDS |
| CAAAGACTTGGTTGGACTTG+AGG | 0.454098 | 3_3:-78210262 | Msa0475140:CDS |
| TCCAACCAAGTCTTTGGTGC+AGG | 0.454333 | 3_3:+78210269 | None:intergenic |
| TACCTTGTTCTCTTCACTCC+AGG | 0.458116 | 3_3:-78210422 | Msa0475140:CDS |
| AGATTCAATTGGAGCAATCA+AGG | 0.463937 | 3_3:-78210556 | Msa0475140:CDS |
| TCCGCGAATTCGATATTAGA+TGG | 0.471848 | 3_3:-78210811 | Msa0475140:CDS |
| ATCATAGCATCCTTGTAGCC+TGG | 0.481377 | 3_3:+78210404 | None:intergenic |
| TGACAGGGTCAAGATTCAAT+TGG | 0.481436 | 3_3:-78210567 | Msa0475140:CDS |
| TCTCTTCACTCCAGGCTACA+AGG | 0.485295 | 3_3:-78210414 | Msa0475140:CDS |
| ACCATCTAATATCGAATTCG+CGG | 0.487526 | 3_3:+78210810 | None:intergenic |
| GAAGAACCTTTAGATGAAAA+GGG | 0.490344 | 3_3:-78210662 | Msa0475140:CDS |
| AGTAGTTTCCCTTAATGAAA+GGG | 0.500410 | 3_3:+78210363 | None:intergenic |
| CCCTGCACCAAAGACTTGGT+TGG | 0.503875 | 3_3:-78210270 | Msa0475140:CDS |
| GTAGTCTACCTGAATCTGAC+AGG | 0.507752 | 3_3:-78210583 | Msa0475140:CDS |
| TTATCCCTGCACCAAAGACT+TGG | 0.509762 | 3_3:-78210274 | Msa0475140:CDS |
| CTTATGTTAGGTAACATATC+CGG | 0.517913 | 3_3:-78211080 | Msa0475140:intron |
| GAATTCGATATTAGATGGTC+AGG | 0.521252 | 3_3:-78210806 | Msa0475140:CDS |
| TAGTAGTTTCCCTTAATGAA+AGG | 0.521318 | 3_3:+78210362 | None:intergenic |
| GAATATTCAAGGTTGATTGA+AGG | 0.523778 | 3_3:-78210725 | Msa0475140:CDS |
| TCAAGGTTGATTGAAGGAGA+TGG | 0.526868 | 3_3:-78210719 | Msa0475140:CDS |
| TAAGTCAAAACTTTAGGAGG+AGG | 0.533314 | 3_3:-78210223 | Msa0475140:CDS |
| GCTTCAGCTATGATGTGAGC+TGG | 0.534188 | 3_3:+78210845 | None:intergenic |
| TATGAAACTTCCAGTAAATG+AGG | 0.537711 | 3_3:+78210508 | None:intergenic |
| GAAGTCAAGGACATTAAGAA+AGG | 0.539164 | 3_3:-78211043 | Msa0475140:CDS |
| AGGTGTAAGATCAGTCCAAA+AGG | 0.543212 | 3_3:-78210203 | Msa0475140:CDS |
| GAAGAAGAATCTCTAGGACT+AGG | 0.547253 | 3_3:+78210620 | None:intergenic |
| ATGCTAGTGGAACAATGCAT+TGG | 0.548958 | 3_3:-78210160 | Msa0475140:CDS |
| CTACAAGGATGCTATGATGT+TGG | 0.551390 | 3_3:-78210399 | Msa0475140:CDS |
| GAGCATGAAATTTCAGAAGC+AGG | 0.554400 | 3_3:-78211219 | Msa0475140:CDS |
| AGTTAAGTCAAAACTTTAGG+AGG | 0.555539 | 3_3:-78210226 | Msa0475140:CDS |
| CTAGGACTAGGAGTCCCTCT+TGG | 0.556097 | 3_3:+78210632 | None:intergenic |
| ATTGTTCCACTAGCATCTGC+TGG | 0.557819 | 3_3:+78210167 | None:intergenic |
| CTCTGCTTATGTAGTTGGAA+AGG | 0.565206 | 3_3:-78210093 | Msa0475140:CDS |
| GTATATGAAGAAGAATCTCT+AGG | 0.565470 | 3_3:+78210614 | None:intergenic |
| TAGTATGGGAACAAATAGCC+AGG | 0.572151 | 3_3:-78211241 | Msa0475140:exon |
| TGAAGCAGCTGATGTGTCAA+AGG | 0.574148 | 3_3:+78209947 | None:intergenic |
| AAGGATGCTATGATGTTGGT+AGG | 0.578373 | 3_3:-78210395 | Msa0475140:CDS |
| ATTGGATCTCAGAAGCTCAC+AGG | 0.582954 | 3_3:-78210142 | Msa0475140:CDS |
| TCTTATCCAGCAGATGCTAG+TGG | 0.585875 | 3_3:-78210173 | Msa0475140:CDS |
| GAAAAGGGAAAGTCACCAAG+AGG | 0.596956 | 3_3:-78210647 | Msa0475140:CDS |
| CCAACCAAGTCTTTGGTGCA+GGG | 0.603770 | 3_3:+78210270 | None:intergenic |
| GCACTGAAAAGTATTAGTAT+GGG | 0.608803 | 3_3:-78211255 | Msa0475140:exon |
| GGTTGTAGAAAATGAAGTCA+AGG | 0.620310 | 3_3:-78211056 | Msa0475140:CDS |
| AGCCTGGAGTGAAGAGAACA+AGG | 0.633075 | 3_3:+78210420 | None:intergenic |
| GACTACAGATCACAAAATCA+GGG | 0.633592 | 3_3:+78210045 | None:intergenic |
| ATGTTAGGTAACATATCCGG+AGG | 0.642612 | 3_3:-78211077 | Msa0475140:intron |
| CTTATGTAGTTGGAAAGGAT+CGG | 0.648072 | 3_3:-78210088 | Msa0475140:CDS |
| AATTTCAGAAGCAGGATCTG+AGG | 0.653221 | 3_3:-78211211 | Msa0475140:intron |
| CTTTCCAACTACATAAGCAG+AGG | 0.664110 | 3_3:+78210094 | None:intergenic |
| AAGTTGCAAATCAAACAGCA+TGG | 0.672925 | 3_3:-78210996 | Msa0475140:CDS |
| AAAAGGGAAAGTCACCAAGA+GGG | 0.676816 | 3_3:-78210646 | Msa0475140:CDS |
| TAGTCTACCTGAATCTGACA+GGG | 0.697732 | 3_3:-78210582 | Msa0475140:CDS |
| TACAGATCACAAAATCAGGG+CGG | 0.767436 | 3_3:+78210048 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAATCACACATA+AGG | + | chr3_3:78210077-78210096 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAATCACACATA+AGG | + | chr3_3:78210077-78210096 | None:intergenic | 15.0% |
| !! | CTAATACCTTATAAAATCTT+GGG | + | chr3_3:78209947-78209966 | None:intergenic | 20.0% |
| !! | ATACACTTTAATCTTATGTT+AGG | - | chr3_3:78210130-78210149 | Msa0475140:CDS | 20.0% |
| !!! | TCAAGAAGAAGATTTTATAA+AGG | - | chr3_3:78210898-78210917 | Msa0475140:intron | 20.0% |
| !! | CTAATACCTTATAAAATCTT+GGG | + | chr3_3:78209947-78209966 | None:intergenic | 20.0% |
| !! | ATACACTTTAATCTTATGTT+AGG | - | chr3_3:78210130-78210149 | Msa0475140:CDS | 20.0% |
| !!! | TCAAGAAGAAGATTTTATAA+AGG | - | chr3_3:78210898-78210917 | Msa0475140:intron | 20.0% |
| ! | CCTAATACCTTATAAAATCT+TGG | + | chr3_3:78209948-78209967 | None:intergenic | 25.0% |
| !!! | CCAAGATTTTATAAGGTATT+AGG | - | chr3_3:78209945-78209964 | Msa0475140:CDS | 25.0% |
| ! | CCAACAAACAAATTAAAAGT+TGG | + | chr3_3:78210274-78210293 | None:intergenic | 25.0% |
| !!! | CCAACTTTTAATTTGTTTGT+TGG | - | chr3_3:78210271-78210290 | Msa0475140:CDS | 25.0% |
| !!! | TTTTTTCAGCTTCAATTCAT+TGG | + | chr3_3:78210316-78210335 | None:intergenic | 25.0% |
| ! | ATGAATTGAAGCTGAAAAAA+TGG | - | chr3_3:78210316-78210335 | Msa0475140:CDS | 25.0% |
| ! | TGAATTGTATCAAAACAGAA+AGG | - | chr3_3:78210341-78210360 | Msa0475140:CDS | 25.0% |
| !! | TCAACATATTCCATTTCTTT+TGG | + | chr3_3:78210452-78210471 | None:intergenic | 25.0% |
| ! | GATTCTTCTTCATATACATT+TGG | - | chr3_3:78210614-78210633 | Msa0475140:CDS | 25.0% |
| !!! | TATTTTGAGCTTGAATTTCT+GGG | + | chr3_3:78210745-78210764 | None:intergenic | 25.0% |
| !!! | TTATTTTGAGCTTGAATTTC+TGG | + | chr3_3:78210746-78210765 | None:intergenic | 25.0% |
| ! | AGAAATTCAAGCTCAAAATA+AGG | - | chr3_3:78210745-78210764 | Msa0475140:CDS | 25.0% |
| !!! | AATAAGGTTTTGAAGCATTA+CGG | - | chr3_3:78210761-78210780 | Msa0475140:CDS | 25.0% |
| !!! | AAAGGAATTTGCTTGTTTTA+AGG | - | chr3_3:78210916-78210935 | Msa0475140:intron | 25.0% |
| ! | CCTAATACCTTATAAAATCT+TGG | + | chr3_3:78209948-78209967 | None:intergenic | 25.0% |
| !!! | CCAAGATTTTATAAGGTATT+AGG | - | chr3_3:78209945-78209964 | Msa0475140:CDS | 25.0% |
| ! | CCAACAAACAAATTAAAAGT+TGG | + | chr3_3:78210274-78210293 | None:intergenic | 25.0% |
| !!! | CCAACTTTTAATTTGTTTGT+TGG | - | chr3_3:78210271-78210290 | Msa0475140:CDS | 25.0% |
| !!! | TTTTTTCAGCTTCAATTCAT+TGG | + | chr3_3:78210316-78210335 | None:intergenic | 25.0% |
| ! | ATGAATTGAAGCTGAAAAAA+TGG | - | chr3_3:78210316-78210335 | Msa0475140:CDS | 25.0% |
| ! | TGAATTGTATCAAAACAGAA+AGG | - | chr3_3:78210341-78210360 | Msa0475140:CDS | 25.0% |
| !! | TCAACATATTCCATTTCTTT+TGG | + | chr3_3:78210452-78210471 | None:intergenic | 25.0% |
| ! | GATTCTTCTTCATATACATT+TGG | - | chr3_3:78210614-78210633 | Msa0475140:CDS | 25.0% |
| !!! | TATTTTGAGCTTGAATTTCT+GGG | + | chr3_3:78210745-78210764 | None:intergenic | 25.0% |
| !!! | TTATTTTGAGCTTGAATTTC+TGG | + | chr3_3:78210746-78210765 | None:intergenic | 25.0% |
| ! | AGAAATTCAAGCTCAAAATA+AGG | - | chr3_3:78210745-78210764 | Msa0475140:CDS | 25.0% |
| !!! | AATAAGGTTTTGAAGCATTA+CGG | - | chr3_3:78210761-78210780 | Msa0475140:CDS | 25.0% |
| !!! | AAAGGAATTTGCTTGTTTTA+AGG | - | chr3_3:78210916-78210935 | Msa0475140:intron | 25.0% |
| ! | CTTCTACCCAAGATTTTATA+AGG | - | chr3_3:78209938-78209957 | Msa0475140:CDS | 30.0% |
| !! | GCACTGAAAAGTATTAGTAT+GGG | - | chr3_3:78209967-78209986 | Msa0475140:CDS | 30.0% |
| ! | CTGAATTATTGAAGCATTAG+AGG | + | chr3_3:78210102-78210121 | None:intergenic | 30.0% |
| CTTATGTTAGGTAACATATC+CGG | - | chr3_3:78210142-78210161 | Msa0475140:CDS | 30.0% | |
| ! | CAAAGTATCCAGAATATTCA+AGG | - | chr3_3:78210486-78210505 | Msa0475140:CDS | 30.0% |
| TCAATCAACCTTGAATATTC+TGG | + | chr3_3:78210497-78210516 | None:intergenic | 30.0% | |
| ! | GAATATTCAAGGTTGATTGA+AGG | - | chr3_3:78210497-78210516 | Msa0475140:CDS | 30.0% |
| ! | AGGTTCTTCATTGATGATAA+AGG | + | chr3_3:78210549-78210568 | None:intergenic | 30.0% |
| TGAAGAACCTTTAGATGAAA+AGG | - | chr3_3:78210559-78210578 | Msa0475140:CDS | 30.0% | |
| GAAGAACCTTTAGATGAAAA+GGG | - | chr3_3:78210560-78210579 | Msa0475140:CDS | 30.0% | |
| GTATATGAAGAAGAATCTCT+AGG | + | chr3_3:78210611-78210630 | None:intergenic | 30.0% | |
| AACAAGAAATCCTCATTTAC+TGG | - | chr3_3:78210704-78210723 | Msa0475140:CDS | 30.0% | |
| TATGAAACTTCCAGTAAATG+AGG | + | chr3_3:78210717-78210736 | None:intergenic | 30.0% | |
| AGAAAGTTACCCTTTCATTA+AGG | - | chr3_3:78210850-78210869 | Msa0475140:CDS | 30.0% | |
| GAAAGTTACCCTTTCATTAA+GGG | - | chr3_3:78210851-78210870 | Msa0475140:CDS | 30.0% | |
| AGTAGTTTCCCTTAATGAAA+GGG | + | chr3_3:78210862-78210881 | None:intergenic | 30.0% | |
| TAGTAGTTTCCCTTAATGAA+AGG | + | chr3_3:78210863-78210882 | None:intergenic | 30.0% | |
| ATCTTCTTCTTGATCAAGAA+TGG | + | chr3_3:78210891-78210910 | None:intergenic | 30.0% | |
| CTCAGTTAAGTCAAAACTTT+AGG | - | chr3_3:78210993-78211012 | Msa0475140:CDS | 30.0% | |
| AGTTAAGTCAAAACTTTAGG+AGG | - | chr3_3:78210996-78211015 | Msa0475140:CDS | 30.0% | |
| AAAAGGCAAGTAATTCTTGA+AGG | + | chr3_3:78211241-78211260 | None:intergenic | 30.0% | |
| ! | CTTCTACCCAAGATTTTATA+AGG | - | chr3_3:78209938-78209957 | Msa0475140:CDS | 30.0% |
| !! | GCACTGAAAAGTATTAGTAT+GGG | - | chr3_3:78209967-78209986 | Msa0475140:CDS | 30.0% |
| ! | CTGAATTATTGAAGCATTAG+AGG | + | chr3_3:78210102-78210121 | None:intergenic | 30.0% |
| CTTATGTTAGGTAACATATC+CGG | - | chr3_3:78210142-78210161 | Msa0475140:CDS | 30.0% | |
| ! | CAAAGTATCCAGAATATTCA+AGG | - | chr3_3:78210486-78210505 | Msa0475140:CDS | 30.0% |
| TCAATCAACCTTGAATATTC+TGG | + | chr3_3:78210497-78210516 | None:intergenic | 30.0% | |
| ! | GAATATTCAAGGTTGATTGA+AGG | - | chr3_3:78210497-78210516 | Msa0475140:CDS | 30.0% |
| ! | AGGTTCTTCATTGATGATAA+AGG | + | chr3_3:78210549-78210568 | None:intergenic | 30.0% |
| TGAAGAACCTTTAGATGAAA+AGG | - | chr3_3:78210559-78210578 | Msa0475140:CDS | 30.0% | |
| GAAGAACCTTTAGATGAAAA+GGG | - | chr3_3:78210560-78210579 | Msa0475140:CDS | 30.0% | |
| GTATATGAAGAAGAATCTCT+AGG | + | chr3_3:78210611-78210630 | None:intergenic | 30.0% | |
| AACAAGAAATCCTCATTTAC+TGG | - | chr3_3:78210704-78210723 | Msa0475140:CDS | 30.0% | |
| TATGAAACTTCCAGTAAATG+AGG | + | chr3_3:78210717-78210736 | None:intergenic | 30.0% | |
| AGAAAGTTACCCTTTCATTA+AGG | - | chr3_3:78210850-78210869 | Msa0475140:CDS | 30.0% | |
| GAAAGTTACCCTTTCATTAA+GGG | - | chr3_3:78210851-78210870 | Msa0475140:CDS | 30.0% | |
| AGTAGTTTCCCTTAATGAAA+GGG | + | chr3_3:78210862-78210881 | None:intergenic | 30.0% | |
| TAGTAGTTTCCCTTAATGAA+AGG | + | chr3_3:78210863-78210882 | None:intergenic | 30.0% | |
| ATCTTCTTCTTGATCAAGAA+TGG | + | chr3_3:78210891-78210910 | None:intergenic | 30.0% | |
| CTCAGTTAAGTCAAAACTTT+AGG | - | chr3_3:78210993-78211012 | Msa0475140:CDS | 30.0% | |
| AGTTAAGTCAAAACTTTAGG+AGG | - | chr3_3:78210996-78211015 | Msa0475140:CDS | 30.0% | |
| AAAAGGCAAGTAATTCTTGA+AGG | + | chr3_3:78211241-78211260 | None:intergenic | 30.0% | |
| !! | GGCACTGAAAAGTATTAGTA+TGG | - | chr3_3:78209966-78209985 | Msa0475140:CDS | 35.0% |
| ! | ACTTCATTTTCTACAACCTC+CGG | + | chr3_3:78210164-78210183 | None:intergenic | 35.0% |
| GGTTGTAGAAAATGAAGTCA+AGG | - | chr3_3:78210166-78210185 | Msa0475140:CDS | 35.0% | |
| GAAGTCAAGGACATTAAGAA+AGG | - | chr3_3:78210179-78210198 | Msa0475140:CDS | 35.0% | |
| AAGTTGCAAATCAAACAGCA+TGG | - | chr3_3:78210226-78210245 | Msa0475140:CDS | 35.0% | |
| ! | ATCAAACAGCATGGTCTTAA+AGG | - | chr3_3:78210235-78210254 | Msa0475140:CDS | 35.0% |
| ACCATCTAATATCGAATTCG+CGG | + | chr3_3:78210415-78210434 | None:intergenic | 35.0% | |
| GAATTCGATATTAGATGGTC+AGG | - | chr3_3:78210416-78210435 | Msa0475140:CDS | 35.0% | |
| TCCAATCACACCAAAAGAAA+TGG | - | chr3_3:78210439-78210458 | Msa0475140:CDS | 35.0% | |
| !! | TCCATTTCTTTTGGTGTGAT+TGG | + | chr3_3:78210443-78210462 | None:intergenic | 35.0% |
| TTGATTGAAGGAGATGGAAA+TGG | - | chr3_3:78210509-78210528 | Msa0475140:CDS | 35.0% | |
| TGATTGAAGGAGATGGAAAT+GGG | - | chr3_3:78210510-78210529 | Msa0475140:CDS | 35.0% | |
| ! | GACTTTCCCTTTTCATCTAA+AGG | + | chr3_3:78210569-78210588 | None:intergenic | 35.0% |
| AGATTCAATTGGAGCAATCA+AGG | - | chr3_3:78210666-78210685 | Msa0475140:CDS | 35.0% | |
| !!! | TGCTTGTTTTAAGGAGTCAA+AGG | - | chr3_3:78210925-78210944 | Msa0475140:intron | 35.0% |
| ! | TAAGTCAAAACTTTAGGAGG+AGG | - | chr3_3:78210999-78211018 | Msa0475140:CDS | 35.0% |
| ! | GGATAAGAGAATAAGCCTTT+TGG | + | chr3_3:78211037-78211056 | None:intergenic | 35.0% |
| CTTATGTAGTTGGAAAGGAT+CGG | - | chr3_3:78211134-78211153 | Msa0475140:intron | 35.0% | |
| GACTACAGATCACAAAATCA+GGG | + | chr3_3:78211180-78211199 | None:intergenic | 35.0% | |
| AGACTACAGATCACAAAATC+AGG | + | chr3_3:78211181-78211200 | None:intergenic | 35.0% | |
| AGGATTGGAATTAGTGTTAC+TGG | + | chr3_3:78211221-78211240 | None:intergenic | 35.0% | |
| GCAAGTAATTCTTGAAGGAT+TGG | + | chr3_3:78211236-78211255 | None:intergenic | 35.0% | |
| ! | TACTTGCCTTTTAGTCAGAA+AGG | - | chr3_3:78211249-78211268 | Msa0475140:exon | 35.0% |
| AGGATTCCTTTCTGACTAAA+AGG | + | chr3_3:78211258-78211277 | None:intergenic | 35.0% | |
| !! | GGCACTGAAAAGTATTAGTA+TGG | - | chr3_3:78209966-78209985 | Msa0475140:CDS | 35.0% |
| ! | ACTTCATTTTCTACAACCTC+CGG | + | chr3_3:78210164-78210183 | None:intergenic | 35.0% |
| GGTTGTAGAAAATGAAGTCA+AGG | - | chr3_3:78210166-78210185 | Msa0475140:CDS | 35.0% | |
| GAAGTCAAGGACATTAAGAA+AGG | - | chr3_3:78210179-78210198 | Msa0475140:CDS | 35.0% | |
| AAGTTGCAAATCAAACAGCA+TGG | - | chr3_3:78210226-78210245 | Msa0475140:CDS | 35.0% | |
| ! | ATCAAACAGCATGGTCTTAA+AGG | - | chr3_3:78210235-78210254 | Msa0475140:CDS | 35.0% |
| ACCATCTAATATCGAATTCG+CGG | + | chr3_3:78210415-78210434 | None:intergenic | 35.0% | |
| GAATTCGATATTAGATGGTC+AGG | - | chr3_3:78210416-78210435 | Msa0475140:CDS | 35.0% | |
| TCCAATCACACCAAAAGAAA+TGG | - | chr3_3:78210439-78210458 | Msa0475140:CDS | 35.0% | |
| !! | TCCATTTCTTTTGGTGTGAT+TGG | + | chr3_3:78210443-78210462 | None:intergenic | 35.0% |
| TTGATTGAAGGAGATGGAAA+TGG | - | chr3_3:78210509-78210528 | Msa0475140:CDS | 35.0% | |
| TGATTGAAGGAGATGGAAAT+GGG | - | chr3_3:78210510-78210529 | Msa0475140:CDS | 35.0% | |
| ! | GACTTTCCCTTTTCATCTAA+AGG | + | chr3_3:78210569-78210588 | None:intergenic | 35.0% |
| AGATTCAATTGGAGCAATCA+AGG | - | chr3_3:78210666-78210685 | Msa0475140:CDS | 35.0% | |
| !!! | TGCTTGTTTTAAGGAGTCAA+AGG | - | chr3_3:78210925-78210944 | Msa0475140:intron | 35.0% |
| ! | TAAGTCAAAACTTTAGGAGG+AGG | - | chr3_3:78210999-78211018 | Msa0475140:CDS | 35.0% |
| ! | GGATAAGAGAATAAGCCTTT+TGG | + | chr3_3:78211037-78211056 | None:intergenic | 35.0% |
| CTTATGTAGTTGGAAAGGAT+CGG | - | chr3_3:78211134-78211153 | Msa0475140:intron | 35.0% | |
| GACTACAGATCACAAAATCA+GGG | + | chr3_3:78211180-78211199 | None:intergenic | 35.0% | |
| AGACTACAGATCACAAAATC+AGG | + | chr3_3:78211181-78211200 | None:intergenic | 35.0% | |
| AGGATTGGAATTAGTGTTAC+TGG | + | chr3_3:78211221-78211240 | None:intergenic | 35.0% | |
| GCAAGTAATTCTTGAAGGAT+TGG | + | chr3_3:78211236-78211255 | None:intergenic | 35.0% | |
| ! | TACTTGCCTTTTAGTCAGAA+AGG | - | chr3_3:78211249-78211268 | Msa0475140:exon | 35.0% |
| AGGATTCCTTTCTGACTAAA+AGG | + | chr3_3:78211258-78211277 | None:intergenic | 35.0% | |
| TAGTATGGGAACAAATAGCC+AGG | - | chr3_3:78209981-78210000 | Msa0475140:CDS | 40.0% | |
| !! | CTTCTGAAATTTCATGCTCC+TGG | + | chr3_3:78210002-78210021 | None:intergenic | 40.0% |
| GAGCATGAAATTTCAGAAGC+AGG | - | chr3_3:78210003-78210022 | Msa0475140:CDS | 40.0% | |
| AATTTCAGAAGCAGGATCTG+AGG | - | chr3_3:78210011-78210030 | Msa0475140:CDS | 40.0% | |
| ATGTTAGGTAACATATCCGG+AGG | - | chr3_3:78210145-78210164 | Msa0475140:CDS | 40.0% | |
| TCCGCGAATTCGATATTAGA+TGG | - | chr3_3:78210411-78210430 | Msa0475140:CDS | 40.0% | |
| ! | TCAAGGTTGATTGAAGGAGA+TGG | - | chr3_3:78210503-78210522 | Msa0475140:CDS | 40.0% |
| AAAAGGGAAAGTCACCAAGA+GGG | - | chr3_3:78210576-78210595 | Msa0475140:CDS | 40.0% | |
| !! | GAAGAAGAATCTCTAGGACT+AGG | + | chr3_3:78210605-78210624 | None:intergenic | 40.0% |
| TAGTCTACCTGAATCTGACA+GGG | - | chr3_3:78210640-78210659 | Msa0475140:CDS | 40.0% | |
| TGACAGGGTCAAGATTCAAT+TGG | - | chr3_3:78210655-78210674 | Msa0475140:CDS | 40.0% | |
| CTACAAGGATGCTATGATGT+TGG | - | chr3_3:78210823-78210842 | Msa0475140:CDS | 40.0% | |
| AAGGATGCTATGATGTTGGT+AGG | - | chr3_3:78210827-78210846 | Msa0475140:CDS | 40.0% | |
| TGGTTGGACTTGAGGATTAA+AGG | - | chr3_3:78210968-78210987 | Msa0475140:intron | 40.0% | |
| GGTTGGACTTGAGGATTAAA+GGG | - | chr3_3:78210969-78210988 | Msa0475140:intron | 40.0% | |
| AGGTGTAAGATCAGTCCAAA+AGG | - | chr3_3:78211019-78211038 | Msa0475140:CDS | 40.0% | |
| ATGCTAGTGGAACAATGCAT+TGG | - | chr3_3:78211062-78211081 | Msa0475140:CDS | 40.0% | |
| CTTTCCAACTACATAAGCAG+AGG | + | chr3_3:78211131-78211150 | None:intergenic | 40.0% | |
| CTCTGCTTATGTAGTTGGAA+AGG | - | chr3_3:78211129-78211148 | Msa0475140:intron | 40.0% | |
| TACAGATCACAAAATCAGGG+CGG | + | chr3_3:78211177-78211196 | None:intergenic | 40.0% | |
| TAGTATGGGAACAAATAGCC+AGG | - | chr3_3:78209981-78210000 | Msa0475140:CDS | 40.0% | |
| !! | CTTCTGAAATTTCATGCTCC+TGG | + | chr3_3:78210002-78210021 | None:intergenic | 40.0% |
| GAGCATGAAATTTCAGAAGC+AGG | - | chr3_3:78210003-78210022 | Msa0475140:CDS | 40.0% | |
| AATTTCAGAAGCAGGATCTG+AGG | - | chr3_3:78210011-78210030 | Msa0475140:CDS | 40.0% | |
| ATGTTAGGTAACATATCCGG+AGG | - | chr3_3:78210145-78210164 | Msa0475140:CDS | 40.0% | |
| TCCGCGAATTCGATATTAGA+TGG | - | chr3_3:78210411-78210430 | Msa0475140:CDS | 40.0% | |
| ! | TCAAGGTTGATTGAAGGAGA+TGG | - | chr3_3:78210503-78210522 | Msa0475140:CDS | 40.0% |
| AAAAGGGAAAGTCACCAAGA+GGG | - | chr3_3:78210576-78210595 | Msa0475140:CDS | 40.0% | |
| !! | GAAGAAGAATCTCTAGGACT+AGG | + | chr3_3:78210605-78210624 | None:intergenic | 40.0% |
| TAGTCTACCTGAATCTGACA+GGG | - | chr3_3:78210640-78210659 | Msa0475140:CDS | 40.0% | |
| TGACAGGGTCAAGATTCAAT+TGG | - | chr3_3:78210655-78210674 | Msa0475140:CDS | 40.0% | |
| CTACAAGGATGCTATGATGT+TGG | - | chr3_3:78210823-78210842 | Msa0475140:CDS | 40.0% | |
| AAGGATGCTATGATGTTGGT+AGG | - | chr3_3:78210827-78210846 | Msa0475140:CDS | 40.0% | |
| TGGTTGGACTTGAGGATTAA+AGG | - | chr3_3:78210968-78210987 | Msa0475140:intron | 40.0% | |
| GGTTGGACTTGAGGATTAAA+GGG | - | chr3_3:78210969-78210988 | Msa0475140:intron | 40.0% | |
| AGGTGTAAGATCAGTCCAAA+AGG | - | chr3_3:78211019-78211038 | Msa0475140:CDS | 40.0% | |
| ATGCTAGTGGAACAATGCAT+TGG | - | chr3_3:78211062-78211081 | Msa0475140:CDS | 40.0% | |
| CTTTCCAACTACATAAGCAG+AGG | + | chr3_3:78211131-78211150 | None:intergenic | 40.0% | |
| CTCTGCTTATGTAGTTGGAA+AGG | - | chr3_3:78211129-78211148 | Msa0475140:intron | 40.0% | |
| TACAGATCACAAAATCAGGG+CGG | + | chr3_3:78211177-78211196 | None:intergenic | 40.0% | |
| GAAAAGGGAAAGTCACCAAG+AGG | - | chr3_3:78210575-78210594 | Msa0475140:CDS | 45.0% | |
| GTAGTCTACCTGAATCTGAC+AGG | - | chr3_3:78210639-78210658 | Msa0475140:CDS | 45.0% | |
| ATCTTGACCCTGTCAGATTC+AGG | + | chr3_3:78210650-78210669 | None:intergenic | 45.0% | |
| TACCTTGTTCTCTTCACTCC+AGG | - | chr3_3:78210800-78210819 | Msa0475140:CDS | 45.0% | |
| ATCATAGCATCCTTGTAGCC+TGG | + | chr3_3:78210821-78210840 | None:intergenic | 45.0% | |
| TTATCCCTGCACCAAAGACT+TGG | - | chr3_3:78210948-78210967 | Msa0475140:intron | 45.0% | |
| CTCAAGTCCAACCAAGTCTT+TGG | + | chr3_3:78210962-78210981 | None:intergenic | 45.0% | |
| ! | CAAAGACTTGGTTGGACTTG+AGG | - | chr3_3:78210960-78210979 | Msa0475140:intron | 45.0% |
| TCTTATCCAGCAGATGCTAG+TGG | - | chr3_3:78211049-78211068 | Msa0475140:CDS | 45.0% | |
| ATTGTTCCACTAGCATCTGC+TGG | + | chr3_3:78211058-78211077 | None:intergenic | 45.0% | |
| ATTGGATCTCAGAAGCTCAC+AGG | - | chr3_3:78211080-78211099 | Msa0475140:intron | 45.0% | |
| CAGAAGCTCACAGGAACAAT+TGG | - | chr3_3:78211089-78211108 | Msa0475140:intron | 45.0% | |
| GATGCCTCTGCTTATGTAGT+TGG | - | chr3_3:78211124-78211143 | Msa0475140:intron | 45.0% | |
| TGAAGCAGCTGATGTGTCAA+AGG | + | chr3_3:78211278-78211297 | None:intergenic | 45.0% | |
| GAAAAGGGAAAGTCACCAAG+AGG | - | chr3_3:78210575-78210594 | Msa0475140:CDS | 45.0% | |
| GTAGTCTACCTGAATCTGAC+AGG | - | chr3_3:78210639-78210658 | Msa0475140:CDS | 45.0% | |
| ATCTTGACCCTGTCAGATTC+AGG | + | chr3_3:78210650-78210669 | None:intergenic | 45.0% | |
| TACCTTGTTCTCTTCACTCC+AGG | - | chr3_3:78210800-78210819 | Msa0475140:CDS | 45.0% | |
| ATCATAGCATCCTTGTAGCC+TGG | + | chr3_3:78210821-78210840 | None:intergenic | 45.0% | |
| TTATCCCTGCACCAAAGACT+TGG | - | chr3_3:78210948-78210967 | Msa0475140:intron | 45.0% | |
| CTCAAGTCCAACCAAGTCTT+TGG | + | chr3_3:78210962-78210981 | None:intergenic | 45.0% | |
| ! | CAAAGACTTGGTTGGACTTG+AGG | - | chr3_3:78210960-78210979 | Msa0475140:intron | 45.0% |
| TCTTATCCAGCAGATGCTAG+TGG | - | chr3_3:78211049-78211068 | Msa0475140:CDS | 45.0% | |
| ATTGTTCCACTAGCATCTGC+TGG | + | chr3_3:78211058-78211077 | None:intergenic | 45.0% | |
| ATTGGATCTCAGAAGCTCAC+AGG | - | chr3_3:78211080-78211099 | Msa0475140:intron | 45.0% | |
| CAGAAGCTCACAGGAACAAT+TGG | - | chr3_3:78211089-78211108 | Msa0475140:intron | 45.0% | |
| GATGCCTCTGCTTATGTAGT+TGG | - | chr3_3:78211124-78211143 | Msa0475140:intron | 45.0% | |
| TGAAGCAGCTGATGTGTCAA+AGG | + | chr3_3:78211278-78211297 | None:intergenic | 45.0% | |
| GCTTCAGCTATGATGTGAGC+TGG | + | chr3_3:78210380-78210399 | None:intergenic | 50.0% | |
| AGCCTGGAGTGAAGAGAACA+AGG | + | chr3_3:78210805-78210824 | None:intergenic | 50.0% | |
| TCTCTTCACTCCAGGCTACA+AGG | - | chr3_3:78210808-78210827 | Msa0475140:CDS | 50.0% | |
| ! | CCAACCAAGTCTTTGGTGCA+GGG | + | chr3_3:78210955-78210974 | None:intergenic | 50.0% |
| ! | TCCAACCAAGTCTTTGGTGC+AGG | + | chr3_3:78210956-78210975 | None:intergenic | 50.0% |
| CACATCAGCTGCTTCATCTC+AGG | - | chr3_3:78211282-78211301 | Msa0475140:five_prime_UTR | 50.0% | |
| GCTTCAGCTATGATGTGAGC+TGG | + | chr3_3:78210380-78210399 | None:intergenic | 50.0% | |
| AGCCTGGAGTGAAGAGAACA+AGG | + | chr3_3:78210805-78210824 | None:intergenic | 50.0% | |
| TCTCTTCACTCCAGGCTACA+AGG | - | chr3_3:78210808-78210827 | Msa0475140:CDS | 50.0% | |
| ! | CCAACCAAGTCTTTGGTGCA+GGG | + | chr3_3:78210955-78210974 | None:intergenic | 50.0% |
| ! | TCCAACCAAGTCTTTGGTGC+AGG | + | chr3_3:78210956-78210975 | None:intergenic | 50.0% |
| CACATCAGCTGCTTCATCTC+AGG | - | chr3_3:78211282-78211301 | Msa0475140:five_prime_UTR | 50.0% | |
| CTAGGACTAGGAGTCCCTCT+TGG | + | chr3_3:78210593-78210612 | None:intergenic | 55.0% | |
| ! | CCCTGCACCAAAGACTTGGT+TGG | - | chr3_3:78210952-78210971 | Msa0475140:intron | 55.0% |
| CTAGGACTAGGAGTCCCTCT+TGG | + | chr3_3:78210593-78210612 | None:intergenic | 55.0% | |
| ! | CCCTGCACCAAAGACTTGGT+TGG | - | chr3_3:78210952-78210971 | Msa0475140:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 78209929 | 78211315 | 78209929 | ID=Msa0475140;Name=Msa0475140 |
| chr3_3 | mRNA | 78209929 | 78211315 | 78209929 | ID=Msa0475140-mRNA-1;Parent=Msa0475140;Name=Msa0475140-mRNA-1;_AED=0.04;_eAED=0.04;_QI=56|1|0.66|1|1|1|3|0|369 |
| chr3_3 | exon | 78209929 | 78210885 | 78209929 | ID=Msa0475140-mRNA-1:exon:21050;Parent=Msa0475140-mRNA-1 |
| chr3_3 | exon | 78210988 | 78211092 | 78210988 | ID=Msa0475140-mRNA-1:exon:21049;Parent=Msa0475140-mRNA-1 |
| chr3_3 | exon | 78211212 | 78211315 | 78211212 | ID=Msa0475140-mRNA-1:exon:21048;Parent=Msa0475140-mRNA-1 |
| chr3_3 | five_prime_UTR | 78211260 | 78211315 | 78211260 | ID=Msa0475140-mRNA-1:five_prime_utr;Parent=Msa0475140-mRNA-1 |
| chr3_3 | CDS | 78211212 | 78211259 | 78211212 | ID=Msa0475140-mRNA-1:cds;Parent=Msa0475140-mRNA-1 |
| chr3_3 | CDS | 78210988 | 78211092 | 78210988 | ID=Msa0475140-mRNA-1:cds;Parent=Msa0475140-mRNA-1 |
| chr3_3 | CDS | 78209929 | 78210885 | 78209929 | ID=Msa0475140-mRNA-1:cds;Parent=Msa0475140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
