Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379170 | XP_039687674.1 | 98.916 | 369 | 4 | 0 | 1 | 369 | 1 | 369 | 0.0 | 763 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379170 | G7J3W3 | 98.916 | 369 | 4 | 0 | 1 | 369 | 1 | 369 | 0.0 | 763 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032350 | Msa0379170 | -0.804021 | 2.638232e-49 | -8.615850e-47 |
| Msa0077910 | Msa0379170 | -0.834536 | 2.831541e-56 | -8.615850e-47 |
| Msa0081300 | Msa0379170 | -0.800663 | 1.296626e-48 | -8.615850e-47 |
| Msa0092180 | Msa0379170 | -0.805084 | 1.583428e-49 | -8.615850e-47 |
| Msa0122210 | Msa0379170 | -0.808880 | 2.491517e-50 | -8.615850e-47 |
| Msa0125800 | Msa0379170 | -0.830030 | 3.694055e-55 | -8.615850e-47 |
| Msa0155550 | Msa0379170 | -0.800605 | 1.332386e-48 | -8.615850e-47 |
| Msa0170440 | Msa0379170 | -0.833870 | 4.159568e-56 | -8.615850e-47 |
| Msa0172660 | Msa0379170 | -0.819735 | 9.936943e-53 | -8.615850e-47 |
| Msa0177280 | Msa0379170 | -0.800643 | 1.308955e-48 | -8.615850e-47 |
| Msa0379170 | Msa0379450 | -0.831627 | 1.499607e-55 | -8.615850e-47 |
| Msa0379170 | Msa0380060 | -0.822574 | 2.202265e-53 | -8.615850e-47 |
| Msa0379170 | Msa0425810 | -0.828074 | 1.100291e-54 | -8.615850e-47 |
| Msa0379170 | Msa0428760 | 0.995591 | 8.112196e-218 | -8.615850e-47 |
| Msa0379170 | Msa0429270 | -0.825596 | 4.300503e-54 | -8.615850e-47 |
| Msa0379170 | Msa0472270 | -0.829402 | 5.253692e-55 | -8.615850e-47 |
| Msa0379170 | Msa0472570 | -0.826252 | 3.004689e-54 | -8.615850e-47 |
| Msa0379170 | Msa0475140 | 0.888506 | 5.558962e-73 | -8.615850e-47 |
| Msa0379170 | Msa0503120 | -0.803346 | 3.642606e-49 | -8.615850e-47 |
| Msa0379170 | Msa0504740 | -0.800832 | 1.197913e-48 | -8.615850e-47 |
| Msa0379170 | Msa0705250 | -0.801694 | 7.979913e-49 | -8.615850e-47 |
| Msa0379170 | Msa0732100 | -0.830946 | 2.205577e-55 | -8.615850e-47 |
| Msa0379170 | Msa0733110 | -0.811598 | 6.460961e-51 | -8.615850e-47 |
| Msa0379170 | Msa0773080 | -0.828959 | 6.726185e-55 | -8.615850e-47 |
| Msa0379170 | Msa0802080 | 0.829757 | 4.304869e-55 | -8.615850e-47 |
| Msa0379170 | Msa0810370 | -0.841175 | 5.573022e-58 | -8.615850e-47 |
| Msa0379170 | Msa0848270 | 0.810699 | 1.012466e-50 | -8.615850e-47 |
| Msa0379170 | Msa0886880 | -0.818076 | 2.367188e-52 | -8.615850e-47 |
| Msa0379170 | Msa0945560 | -0.821167 | 4.662267e-53 | -8.615850e-47 |
| Msa0379170 | Msa0988030 | -0.803868 | 2.838961e-49 | -8.615850e-47 |
| Msa0379170 | Msa1033120 | -0.810119 | 1.350377e-50 | -8.615850e-47 |
| Msa0379170 | Msa1061310 | -0.831715 | 1.426351e-55 | -8.615850e-47 |
| Msa0379170 | Msa1084150 | -0.824103 | 9.674540e-54 | -8.615850e-47 |
| Msa0379170 | Msa1106580 | -0.827174 | 1.810029e-54 | -8.615850e-47 |
| Msa0379170 | Msa1127510 | -0.811383 | 7.197775e-51 | -8.615850e-47 |
| Msa0379170 | Msa1149960 | -0.847811 | 9.131681e-60 | -8.615850e-47 |
| Msa0379170 | Msa1208750 | -0.817171 | 3.786996e-52 | -8.615850e-47 |
| Msa0379170 | Msa1235780 | 0.807677 | 4.497855e-50 | -8.615850e-47 |
| Msa0379170 | Msa1262320 | 0.813641 | 2.309836e-51 | -8.615850e-47 |
| Msa0379170 | Msa1279700 | -0.842680 | 2.230448e-58 | -8.615850e-47 |
| Msa0379170 | Msa1398840 | -0.828649 | 7.993240e-55 | -8.615850e-47 |
| Msa0379170 | Msa1411830 | -0.814929 | 1.199314e-51 | -8.615850e-47 |
| Msa0379170 | Msa1412750 | -0.805139 | 1.541708e-49 | -8.615850e-47 |
| Msa0342620 | Msa0379170 | -0.803245 | 3.822853e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379170 | MtrunA17_Chr3g0132211 | 98.916 | 369 | 4 | 0 | 1 | 369 | 1 | 369 | 0.0 | 763 |
| Msa0379170 | MtrunA17_Chr4g0057361 | 72.460 | 374 | 73 | 7 | 1 | 365 | 1 | 353 | 0.0 | 533 |
| Msa0379170 | MtrunA17_Chr4g0057931 | 71.067 | 356 | 78 | 6 | 13 | 360 | 6 | 344 | 1.11e-175 | 492 |
| Msa0379170 | MtrunA17_Chr2g0302241 | 98.667 | 225 | 3 | 0 | 1 | 225 | 1 | 225 | 1.38e-164 | 459 |
| Msa0379170 | MtrunA17_Chr2g0302251 | 100.000 | 79 | 0 | 0 | 291 | 369 | 1 | 79 | 2.92e-52 | 168 |
| Msa0379170 | MtrunA17_Chr8g0374071 | 30.198 | 202 | 124 | 5 | 166 | 355 | 181 | 377 | 2.36e-18 | 87.0 |
| Msa0379170 | MtrunA17_Chr8g0374091 | 29.703 | 202 | 125 | 5 | 166 | 355 | 181 | 377 | 2.89e-18 | 86.7 |
| Msa0379170 | MtrunA17_Chr1g0203981 | 29.167 | 192 | 114 | 7 | 181 | 357 | 174 | 358 | 6.23e-17 | 82.4 |
| Msa0379170 | MtrunA17_Chr6g0474301 | 29.146 | 199 | 122 | 7 | 181 | 367 | 172 | 363 | 2.09e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379170 | AT2G23520.1 | 29.208 | 202 | 126 | 5 | 166 | 355 | 182 | 378 | 3.09e-18 | 87.0 |
| Msa0379170 | AT5G66950.1 | 32.597 | 181 | 105 | 6 | 187 | 355 | 201 | 376 | 3.73e-18 | 86.7 |
| Msa0379170 | AT5G51920.1 | 27.615 | 239 | 140 | 9 | 137 | 357 | 128 | 351 | 3.49e-17 | 83.6 |
| Msa0379170 | AT4G37100.1 | 28.713 | 202 | 127 | 6 | 166 | 355 | 186 | 382 | 4.12e-17 | 83.6 |
| Msa0379170 | AT4G22980.1 | 28.807 | 243 | 144 | 8 | 138 | 357 | 94 | 330 | 4.85e-15 | 77.0 |
Find 87 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATCAACCTTGAATATTC+TGG | 0.214881 | 3_1:-80072543 | None:intergenic |
| TGGTTGGACTTGAGGATTAA+AGG | 0.225306 | 3_1:+80073017 | Msa0379170:CDS |
| AGAAAGTTACCCTTTCATTA+AGG | 0.229969 | 3_1:+80072899 | Msa0379170:CDS |
| ATCAAACAGCATGGTCTTAA+AGG | 0.234277 | 3_1:+80072284 | Msa0379170:CDS |
| AGGATTCCTTTCTGACTAAA+AGG | 0.251516 | 3_1:-80073304 | None:intergenic |
| GGCACTGAAAAGTATTAGTA+TGG | 0.260430 | 3_1:+80072015 | Msa0379170:exon |
| AGGATTGGAATTAGTGTTAC+TGG | 0.261905 | 3_1:-80073267 | None:intergenic |
| TCAACATATTCCATTTCTTT+TGG | 0.272659 | 3_1:-80072498 | None:intergenic |
| AACAAGAAATCCTCATTTAC+TGG | 0.292904 | 3_1:+80072753 | Msa0379170:CDS |
| ATCTTGGCCCTGTCAGATTC+AGG | 0.305608 | 3_1:-80072696 | None:intergenic |
| CTCAGTTAAGTCAAAACTTT+AGG | 0.307220 | 3_1:+80073042 | Msa0379170:CDS |
| CCTAATACCTTATAAAATCT+TGG | 0.318166 | 3_1:-80071994 | None:intergenic |
| GAAAGTTACCCTTTCATTAA+GGG | 0.324695 | 3_1:+80072900 | Msa0379170:CDS |
| GGAAATTCAAGCTCAAAATA+AGG | 0.334997 | 3_1:+80072794 | Msa0379170:CDS |
| AGGTTCTTCATTGATGATAA+AGG | 0.352472 | 3_1:-80072595 | None:intergenic |
| CTCAAGTCCAACCAAGTCTT+TGG | 0.354864 | 3_1:-80073008 | None:intergenic |
| TGAAGAACCTTTAGATGAAA+AGG | 0.360026 | 3_1:+80072608 | Msa0379170:CDS |
| TGATTGCTCCAATTGAATCT+TGG | 0.367304 | 3_1:-80072712 | None:intergenic |
| GGATAAGAGAATAAGCCTTT+TGG | 0.370572 | 3_1:-80073083 | None:intergenic |
| TTGATTGAAGGAGATGGAAA+TGG | 0.386242 | 3_1:+80072558 | Msa0379170:CDS |
| GGTTGGACTTGAGGATTAAA+GGG | 0.390781 | 3_1:+80073018 | Msa0379170:CDS |
| TCCAATCACACCAAAAGAAA+TGG | 0.396737 | 3_1:+80072488 | Msa0379170:CDS |
| AGACTACAGATCACAAAATC+AGG | 0.400820 | 3_1:-80073227 | None:intergenic |
| GCAAGTGATTCTTGAAGGAT+TGG | 0.425657 | 3_1:-80073282 | None:intergenic |
| ATCTTCTTCTTGATCAAGAA+TGG | 0.426120 | 3_1:-80072937 | None:intergenic |
| CAGAAGCTCACAGGAACAAT+TGG | 0.426312 | 3_1:+80073138 | Msa0379170:CDS |
| GATTCTTCTTCATATACATT+TGG | 0.428676 | 3_1:+80072663 | Msa0379170:CDS |
| CTAATACCTTATAAAATCTT+GGG | 0.442998 | 3_1:-80071993 | None:intergenic |
| GATGCCTCTGCTTATGTAGT+TGG | 0.445059 | 3_1:+80073173 | Msa0379170:CDS |
| CTTCTGAAATTTCATGCTCC+TGG | 0.446468 | 3_1:-80072048 | None:intergenic |
| CAAAGTATCCAGAATATTCA+AGG | 0.446957 | 3_1:+80072535 | Msa0379170:CDS |
| CACATCAGCTGCTTCATCTC+AGG | 0.449866 | 3_1:+80073331 | Msa0379170:CDS |
| TGATTGAAGGAGATGGAAAT+GGG | 0.449991 | 3_1:+80072559 | Msa0379170:CDS |
| AAAAGGCAAGTGATTCTTGA+AGG | 0.453246 | 3_1:-80073287 | None:intergenic |
| CAAAGACTTGGTTGGACTTG+AGG | 0.454098 | 3_1:+80073009 | Msa0379170:CDS |
| TCCAACCAAGTCTTTGGTGC+AGG | 0.454333 | 3_1:-80073002 | None:intergenic |
| TACCTTGTTCTCTTCACTCC+AGG | 0.458116 | 3_1:+80072849 | Msa0379170:CDS |
| AGATTCAATTGGAGCAATCA+AGG | 0.463937 | 3_1:+80072715 | Msa0379170:CDS |
| TGACAGGGCCAAGATTCAAT+TGG | 0.465387 | 3_1:+80072704 | Msa0379170:CDS |
| TCCGCGAATTCGATATTAGA+TGG | 0.471848 | 3_1:+80072460 | Msa0379170:CDS |
| ATCATAGCATCCTTGTAGCC+TGG | 0.481377 | 3_1:-80072867 | None:intergenic |
| TCTCTTCACTCCAGGCTACA+AGG | 0.485295 | 3_1:+80072857 | Msa0379170:CDS |
| ACCATCTAATATCGAATTCG+CGG | 0.487526 | 3_1:-80072461 | None:intergenic |
| GAAGAACCTTTAGATGAAAA+GGG | 0.490344 | 3_1:+80072609 | Msa0379170:CDS |
| AGTAGTTTCCCTTAATGAAA+GGG | 0.500410 | 3_1:-80072908 | None:intergenic |
| CCCTGCACCAAAGACTTGGT+TGG | 0.503875 | 3_1:+80073001 | Msa0379170:CDS |
| TTATCCCTGCACCAAAGACT+TGG | 0.509762 | 3_1:+80072997 | Msa0379170:CDS |
| GTAGTCTACCTGAATCTGAC+AGG | 0.512389 | 3_1:+80072688 | Msa0379170:CDS |
| TGGAAGTTTCATATCGATCC+CGG | 0.516056 | 3_1:+80072773 | Msa0379170:CDS |
| CTTATGTTAGGTAACATATC+CGG | 0.517913 | 3_1:+80072191 | Msa0379170:intron |
| GAATTCGATATTAGATGGTC+AGG | 0.521252 | 3_1:+80072465 | Msa0379170:CDS |
| TAGTAGTTTCCCTTAATGAA+AGG | 0.521318 | 3_1:-80072909 | None:intergenic |
| GAATATTCAAGGTTGATTGA+AGG | 0.523778 | 3_1:+80072546 | Msa0379170:CDS |
| TCAAGGTTGATTGAAGGAGA+TGG | 0.526868 | 3_1:+80072552 | Msa0379170:CDS |
| TAAGTCAAAACTTTAGGAGG+AGG | 0.533314 | 3_1:+80073048 | Msa0379170:CDS |
| GCTTCAGCTATGATGTGAGC+TGG | 0.534188 | 3_1:-80072426 | None:intergenic |
| TATGAAACTTCCAGTAAATG+AGG | 0.537711 | 3_1:-80072763 | None:intergenic |
| GAAGTCAAGGACATTAAGAA+AGG | 0.539164 | 3_1:+80072228 | Msa0379170:CDS |
| AGGTGTAAGATCAGTCCAAA+AGG | 0.543212 | 3_1:+80073068 | Msa0379170:CDS |
| GAAGAAGAATCTCTAGGACT+AGG | 0.547253 | 3_1:-80072651 | None:intergenic |
| ATGCTAGTGGAACAATGCAT+TGG | 0.548958 | 3_1:+80073111 | Msa0379170:CDS |
| CTACAAGGATGCTATGATGT+TGG | 0.551390 | 3_1:+80072872 | Msa0379170:CDS |
| GAGCATGAAATTTCAGAAGC+AGG | 0.554400 | 3_1:+80072052 | Msa0379170:CDS |
| AGTTAAGTCAAAACTTTAGG+AGG | 0.555539 | 3_1:+80073045 | Msa0379170:CDS |
| CTAGGACTAGGAGTCCCTCT+TGG | 0.556097 | 3_1:-80072639 | None:intergenic |
| ATTGTTCCACTAGCATCTGC+TGG | 0.557819 | 3_1:-80073104 | None:intergenic |
| CTCTGCTTATGTAGTTGGAA+AGG | 0.565206 | 3_1:+80073178 | Msa0379170:CDS |
| GTATATGAAGAAGAATCTCT+AGG | 0.565470 | 3_1:-80072657 | None:intergenic |
| TAGTATGGGAACAAATAGCC+AGG | 0.572151 | 3_1:+80072030 | Msa0379170:exon |
| TGAAGCAGCTGATGTGTCAA+AGG | 0.574148 | 3_1:-80073324 | None:intergenic |
| AAGGATGCTATGATGTTGGT+AGG | 0.578373 | 3_1:+80072876 | Msa0379170:CDS |
| ATTGGATCTCAGAAGCTCAC+AGG | 0.582954 | 3_1:+80073129 | Msa0379170:CDS |
| TCTTATCCAGCAGATGCTAG+TGG | 0.585875 | 3_1:+80073098 | Msa0379170:CDS |
| GAAAAGGGAAAGTCACCAAG+AGG | 0.596956 | 3_1:+80072624 | Msa0379170:CDS |
| CCAACCAAGTCTTTGGTGCA+GGG | 0.603770 | 3_1:-80073001 | None:intergenic |
| GCACTGAAAAGTATTAGTAT+GGG | 0.608803 | 3_1:+80072016 | Msa0379170:exon |
| GGTTGTAGAAAATGAAGTCA+AGG | 0.620310 | 3_1:+80072215 | Msa0379170:CDS |
| AGCCTGGAGTGAAGAGAACA+AGG | 0.633075 | 3_1:-80072851 | None:intergenic |
| GACTACAGATCACAAAATCA+GGG | 0.633592 | 3_1:-80073226 | None:intergenic |
| ATGTTAGGTAACATATCCGG+AGG | 0.642612 | 3_1:+80072194 | Msa0379170:intron |
| CTTATGTAGTTGGAAAGGAT+CGG | 0.648072 | 3_1:+80073183 | Msa0379170:CDS |
| AATTTCAGAAGCAGGATCTG+AGG | 0.653221 | 3_1:+80072060 | Msa0379170:CDS |
| CTTTCCAACTACATAAGCAG+AGG | 0.664110 | 3_1:-80073177 | None:intergenic |
| AAGTTGCAAATCAAACAGCA+TGG | 0.672925 | 3_1:+80072275 | Msa0379170:CDS |
| AAAAGGGAAAGTCACCAAGA+GGG | 0.676816 | 3_1:+80072625 | Msa0379170:CDS |
| TAGTCTACCTGAATCTGACA+GGG | 0.688795 | 3_1:+80072689 | Msa0379170:CDS |
| TACAGATCACAAAATCAGGG+CGG | 0.767436 | 3_1:-80073223 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAATCACACATA+AGG | - | chr3_1:80072126-80072145 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAATCACACATA+AGG | - | chr3_1:80072126-80072145 | None:intergenic | 15.0% |
| !! | CTAATACCTTATAAAATCTT+GGG | - | chr3_1:80071996-80072015 | None:intergenic | 20.0% |
| !! | ATACACTTTAATCTTATGTT+AGG | + | chr3_1:80072179-80072198 | Msa0379170:intron | 20.0% |
| !!! | TCAAGAAGAAGATTTTATAA+AGG | + | chr3_1:80072947-80072966 | Msa0379170:CDS | 20.0% |
| !! | CTAATACCTTATAAAATCTT+GGG | - | chr3_1:80071996-80072015 | None:intergenic | 20.0% |
| !! | ATACACTTTAATCTTATGTT+AGG | + | chr3_1:80072179-80072198 | Msa0379170:intron | 20.0% |
| !!! | TCAAGAAGAAGATTTTATAA+AGG | + | chr3_1:80072947-80072966 | Msa0379170:CDS | 20.0% |
| ! | CCTAATACCTTATAAAATCT+TGG | - | chr3_1:80071997-80072016 | None:intergenic | 25.0% |
| !!! | CCAAGATTTTATAAGGTATT+AGG | + | chr3_1:80071994-80072013 | Msa0379170:five_prime_UTR | 25.0% |
| ! | CCAACAAACAAATTAAAAGT+TGG | - | chr3_1:80072323-80072342 | None:intergenic | 25.0% |
| !!! | CCAACTTTTAATTTGTTTGT+TGG | + | chr3_1:80072320-80072339 | Msa0379170:intron | 25.0% |
| !!! | TTTTTTCAGCTTCAATTCAT+TGG | - | chr3_1:80072365-80072384 | None:intergenic | 25.0% |
| ! | ATGAATTGAAGCTGAAAAAA+TGG | + | chr3_1:80072365-80072384 | Msa0379170:intron | 25.0% |
| ! | TGAATTGTATCAAAACAGAA+AGG | + | chr3_1:80072390-80072409 | Msa0379170:intron | 25.0% |
| !! | TCAACATATTCCATTTCTTT+TGG | - | chr3_1:80072501-80072520 | None:intergenic | 25.0% |
| ! | GATTCTTCTTCATATACATT+TGG | + | chr3_1:80072663-80072682 | Msa0379170:CDS | 25.0% |
| !!! | TTATTTTGAGCTTGAATTTC+CGG | - | chr3_1:80072795-80072814 | None:intergenic | 25.0% |
| !!! | AATAAGGTTTTGAAGCATTA+CGG | + | chr3_1:80072810-80072829 | Msa0379170:CDS | 25.0% |
| !!! | AAAGGAATTTGCTTGTTTTA+AGG | + | chr3_1:80072965-80072984 | Msa0379170:CDS | 25.0% |
| ! | CCTAATACCTTATAAAATCT+TGG | - | chr3_1:80071997-80072016 | None:intergenic | 25.0% |
| !!! | CCAAGATTTTATAAGGTATT+AGG | + | chr3_1:80071994-80072013 | Msa0379170:five_prime_UTR | 25.0% |
| ! | CCAACAAACAAATTAAAAGT+TGG | - | chr3_1:80072323-80072342 | None:intergenic | 25.0% |
| !!! | CCAACTTTTAATTTGTTTGT+TGG | + | chr3_1:80072320-80072339 | Msa0379170:intron | 25.0% |
| !!! | TTTTTTCAGCTTCAATTCAT+TGG | - | chr3_1:80072365-80072384 | None:intergenic | 25.0% |
| ! | ATGAATTGAAGCTGAAAAAA+TGG | + | chr3_1:80072365-80072384 | Msa0379170:intron | 25.0% |
| ! | TGAATTGTATCAAAACAGAA+AGG | + | chr3_1:80072390-80072409 | Msa0379170:intron | 25.0% |
| !! | TCAACATATTCCATTTCTTT+TGG | - | chr3_1:80072501-80072520 | None:intergenic | 25.0% |
| ! | GATTCTTCTTCATATACATT+TGG | + | chr3_1:80072663-80072682 | Msa0379170:CDS | 25.0% |
| !!! | TTATTTTGAGCTTGAATTTC+CGG | - | chr3_1:80072795-80072814 | None:intergenic | 25.0% |
| !!! | AATAAGGTTTTGAAGCATTA+CGG | + | chr3_1:80072810-80072829 | Msa0379170:CDS | 25.0% |
| !!! | AAAGGAATTTGCTTGTTTTA+AGG | + | chr3_1:80072965-80072984 | Msa0379170:CDS | 25.0% |
| ! | CTTCTACCCAAGATTTTATA+AGG | + | chr3_1:80071987-80072006 | Msa0379170:five_prime_UTR | 30.0% |
| !! | GCACTGAAAAGTATTAGTAT+GGG | + | chr3_1:80072016-80072035 | Msa0379170:exon | 30.0% |
| ! | CTGAATTATTGAAGCATTAG+AGG | - | chr3_1:80072151-80072170 | None:intergenic | 30.0% |
| CTTATGTTAGGTAACATATC+CGG | + | chr3_1:80072191-80072210 | Msa0379170:intron | 30.0% | |
| ! | CAAAGTATCCAGAATATTCA+AGG | + | chr3_1:80072535-80072554 | Msa0379170:CDS | 30.0% |
| TCAATCAACCTTGAATATTC+TGG | - | chr3_1:80072546-80072565 | None:intergenic | 30.0% | |
| ! | GAATATTCAAGGTTGATTGA+AGG | + | chr3_1:80072546-80072565 | Msa0379170:CDS | 30.0% |
| ! | AGGTTCTTCATTGATGATAA+AGG | - | chr3_1:80072598-80072617 | None:intergenic | 30.0% |
| TGAAGAACCTTTAGATGAAA+AGG | + | chr3_1:80072608-80072627 | Msa0379170:CDS | 30.0% | |
| GAAGAACCTTTAGATGAAAA+GGG | + | chr3_1:80072609-80072628 | Msa0379170:CDS | 30.0% | |
| GTATATGAAGAAGAATCTCT+AGG | - | chr3_1:80072660-80072679 | None:intergenic | 30.0% | |
| AACAAGAAATCCTCATTTAC+TGG | + | chr3_1:80072753-80072772 | Msa0379170:CDS | 30.0% | |
| TATGAAACTTCCAGTAAATG+AGG | - | chr3_1:80072766-80072785 | None:intergenic | 30.0% | |
| !! | TATTTTGAGCTTGAATTTCC+GGG | - | chr3_1:80072794-80072813 | None:intergenic | 30.0% |
| GGAAATTCAAGCTCAAAATA+AGG | + | chr3_1:80072794-80072813 | Msa0379170:CDS | 30.0% | |
| AGAAAGTTACCCTTTCATTA+AGG | + | chr3_1:80072899-80072918 | Msa0379170:CDS | 30.0% | |
| GAAAGTTACCCTTTCATTAA+GGG | + | chr3_1:80072900-80072919 | Msa0379170:CDS | 30.0% | |
| AGTAGTTTCCCTTAATGAAA+GGG | - | chr3_1:80072911-80072930 | None:intergenic | 30.0% | |
| TAGTAGTTTCCCTTAATGAA+AGG | - | chr3_1:80072912-80072931 | None:intergenic | 30.0% | |
| ATCTTCTTCTTGATCAAGAA+TGG | - | chr3_1:80072940-80072959 | None:intergenic | 30.0% | |
| CTCAGTTAAGTCAAAACTTT+AGG | + | chr3_1:80073042-80073061 | Msa0379170:CDS | 30.0% | |
| AGTTAAGTCAAAACTTTAGG+AGG | + | chr3_1:80073045-80073064 | Msa0379170:CDS | 30.0% | |
| ! | CTTCTACCCAAGATTTTATA+AGG | + | chr3_1:80071987-80072006 | Msa0379170:five_prime_UTR | 30.0% |
| !! | GCACTGAAAAGTATTAGTAT+GGG | + | chr3_1:80072016-80072035 | Msa0379170:exon | 30.0% |
| ! | CTGAATTATTGAAGCATTAG+AGG | - | chr3_1:80072151-80072170 | None:intergenic | 30.0% |
| CTTATGTTAGGTAACATATC+CGG | + | chr3_1:80072191-80072210 | Msa0379170:intron | 30.0% | |
| ! | CAAAGTATCCAGAATATTCA+AGG | + | chr3_1:80072535-80072554 | Msa0379170:CDS | 30.0% |
| TCAATCAACCTTGAATATTC+TGG | - | chr3_1:80072546-80072565 | None:intergenic | 30.0% | |
| ! | GAATATTCAAGGTTGATTGA+AGG | + | chr3_1:80072546-80072565 | Msa0379170:CDS | 30.0% |
| ! | AGGTTCTTCATTGATGATAA+AGG | - | chr3_1:80072598-80072617 | None:intergenic | 30.0% |
| TGAAGAACCTTTAGATGAAA+AGG | + | chr3_1:80072608-80072627 | Msa0379170:CDS | 30.0% | |
| GAAGAACCTTTAGATGAAAA+GGG | + | chr3_1:80072609-80072628 | Msa0379170:CDS | 30.0% | |
| GTATATGAAGAAGAATCTCT+AGG | - | chr3_1:80072660-80072679 | None:intergenic | 30.0% | |
| AACAAGAAATCCTCATTTAC+TGG | + | chr3_1:80072753-80072772 | Msa0379170:CDS | 30.0% | |
| TATGAAACTTCCAGTAAATG+AGG | - | chr3_1:80072766-80072785 | None:intergenic | 30.0% | |
| !! | TATTTTGAGCTTGAATTTCC+GGG | - | chr3_1:80072794-80072813 | None:intergenic | 30.0% |
| GGAAATTCAAGCTCAAAATA+AGG | + | chr3_1:80072794-80072813 | Msa0379170:CDS | 30.0% | |
| AGAAAGTTACCCTTTCATTA+AGG | + | chr3_1:80072899-80072918 | Msa0379170:CDS | 30.0% | |
| GAAAGTTACCCTTTCATTAA+GGG | + | chr3_1:80072900-80072919 | Msa0379170:CDS | 30.0% | |
| AGTAGTTTCCCTTAATGAAA+GGG | - | chr3_1:80072911-80072930 | None:intergenic | 30.0% | |
| TAGTAGTTTCCCTTAATGAA+AGG | - | chr3_1:80072912-80072931 | None:intergenic | 30.0% | |
| ATCTTCTTCTTGATCAAGAA+TGG | - | chr3_1:80072940-80072959 | None:intergenic | 30.0% | |
| CTCAGTTAAGTCAAAACTTT+AGG | + | chr3_1:80073042-80073061 | Msa0379170:CDS | 30.0% | |
| AGTTAAGTCAAAACTTTAGG+AGG | + | chr3_1:80073045-80073064 | Msa0379170:CDS | 30.0% | |
| !! | GGCACTGAAAAGTATTAGTA+TGG | + | chr3_1:80072015-80072034 | Msa0379170:exon | 35.0% |
| ! | ACTTCATTTTCTACAACCTC+CGG | - | chr3_1:80072213-80072232 | None:intergenic | 35.0% |
| GGTTGTAGAAAATGAAGTCA+AGG | + | chr3_1:80072215-80072234 | Msa0379170:CDS | 35.0% | |
| GAAGTCAAGGACATTAAGAA+AGG | + | chr3_1:80072228-80072247 | Msa0379170:CDS | 35.0% | |
| AAGTTGCAAATCAAACAGCA+TGG | + | chr3_1:80072275-80072294 | Msa0379170:CDS | 35.0% | |
| ! | ATCAAACAGCATGGTCTTAA+AGG | + | chr3_1:80072284-80072303 | Msa0379170:CDS | 35.0% |
| ACCATCTAATATCGAATTCG+CGG | - | chr3_1:80072464-80072483 | None:intergenic | 35.0% | |
| GAATTCGATATTAGATGGTC+AGG | + | chr3_1:80072465-80072484 | Msa0379170:CDS | 35.0% | |
| TCCAATCACACCAAAAGAAA+TGG | + | chr3_1:80072488-80072507 | Msa0379170:CDS | 35.0% | |
| !! | TCCATTTCTTTTGGTGTGAT+TGG | - | chr3_1:80072492-80072511 | None:intergenic | 35.0% |
| TTGATTGAAGGAGATGGAAA+TGG | + | chr3_1:80072558-80072577 | Msa0379170:CDS | 35.0% | |
| TGATTGAAGGAGATGGAAAT+GGG | + | chr3_1:80072559-80072578 | Msa0379170:CDS | 35.0% | |
| ! | GACTTTCCCTTTTCATCTAA+AGG | - | chr3_1:80072618-80072637 | None:intergenic | 35.0% |
| TGATTGCTCCAATTGAATCT+TGG | - | chr3_1:80072715-80072734 | None:intergenic | 35.0% | |
| AGATTCAATTGGAGCAATCA+AGG | + | chr3_1:80072715-80072734 | Msa0379170:CDS | 35.0% | |
| !!! | TGCTTGTTTTAAGGAGTCAA+AGG | + | chr3_1:80072974-80072993 | Msa0379170:CDS | 35.0% |
| ! | TAAGTCAAAACTTTAGGAGG+AGG | + | chr3_1:80073048-80073067 | Msa0379170:CDS | 35.0% |
| ! | GGATAAGAGAATAAGCCTTT+TGG | - | chr3_1:80073086-80073105 | None:intergenic | 35.0% |
| CTTATGTAGTTGGAAAGGAT+CGG | + | chr3_1:80073183-80073202 | Msa0379170:CDS | 35.0% | |
| GACTACAGATCACAAAATCA+GGG | - | chr3_1:80073229-80073248 | None:intergenic | 35.0% | |
| AGACTACAGATCACAAAATC+AGG | - | chr3_1:80073230-80073249 | None:intergenic | 35.0% | |
| AGGATTGGAATTAGTGTTAC+TGG | - | chr3_1:80073270-80073289 | None:intergenic | 35.0% | |
| AAAAGGCAAGTGATTCTTGA+AGG | - | chr3_1:80073290-80073309 | None:intergenic | 35.0% | |
| AGGATTCCTTTCTGACTAAA+AGG | - | chr3_1:80073307-80073326 | None:intergenic | 35.0% | |
| !! | GGCACTGAAAAGTATTAGTA+TGG | + | chr3_1:80072015-80072034 | Msa0379170:exon | 35.0% |
| ! | ACTTCATTTTCTACAACCTC+CGG | - | chr3_1:80072213-80072232 | None:intergenic | 35.0% |
| GGTTGTAGAAAATGAAGTCA+AGG | + | chr3_1:80072215-80072234 | Msa0379170:CDS | 35.0% | |
| GAAGTCAAGGACATTAAGAA+AGG | + | chr3_1:80072228-80072247 | Msa0379170:CDS | 35.0% | |
| AAGTTGCAAATCAAACAGCA+TGG | + | chr3_1:80072275-80072294 | Msa0379170:CDS | 35.0% | |
| ! | ATCAAACAGCATGGTCTTAA+AGG | + | chr3_1:80072284-80072303 | Msa0379170:CDS | 35.0% |
| ACCATCTAATATCGAATTCG+CGG | - | chr3_1:80072464-80072483 | None:intergenic | 35.0% | |
| GAATTCGATATTAGATGGTC+AGG | + | chr3_1:80072465-80072484 | Msa0379170:CDS | 35.0% | |
| TCCAATCACACCAAAAGAAA+TGG | + | chr3_1:80072488-80072507 | Msa0379170:CDS | 35.0% | |
| !! | TCCATTTCTTTTGGTGTGAT+TGG | - | chr3_1:80072492-80072511 | None:intergenic | 35.0% |
| TTGATTGAAGGAGATGGAAA+TGG | + | chr3_1:80072558-80072577 | Msa0379170:CDS | 35.0% | |
| TGATTGAAGGAGATGGAAAT+GGG | + | chr3_1:80072559-80072578 | Msa0379170:CDS | 35.0% | |
| ! | GACTTTCCCTTTTCATCTAA+AGG | - | chr3_1:80072618-80072637 | None:intergenic | 35.0% |
| TGATTGCTCCAATTGAATCT+TGG | - | chr3_1:80072715-80072734 | None:intergenic | 35.0% | |
| AGATTCAATTGGAGCAATCA+AGG | + | chr3_1:80072715-80072734 | Msa0379170:CDS | 35.0% | |
| !!! | TGCTTGTTTTAAGGAGTCAA+AGG | + | chr3_1:80072974-80072993 | Msa0379170:CDS | 35.0% |
| ! | TAAGTCAAAACTTTAGGAGG+AGG | + | chr3_1:80073048-80073067 | Msa0379170:CDS | 35.0% |
| ! | GGATAAGAGAATAAGCCTTT+TGG | - | chr3_1:80073086-80073105 | None:intergenic | 35.0% |
| CTTATGTAGTTGGAAAGGAT+CGG | + | chr3_1:80073183-80073202 | Msa0379170:CDS | 35.0% | |
| GACTACAGATCACAAAATCA+GGG | - | chr3_1:80073229-80073248 | None:intergenic | 35.0% | |
| AGACTACAGATCACAAAATC+AGG | - | chr3_1:80073230-80073249 | None:intergenic | 35.0% | |
| AGGATTGGAATTAGTGTTAC+TGG | - | chr3_1:80073270-80073289 | None:intergenic | 35.0% | |
| AAAAGGCAAGTGATTCTTGA+AGG | - | chr3_1:80073290-80073309 | None:intergenic | 35.0% | |
| AGGATTCCTTTCTGACTAAA+AGG | - | chr3_1:80073307-80073326 | None:intergenic | 35.0% | |
| TAGTATGGGAACAAATAGCC+AGG | + | chr3_1:80072030-80072049 | Msa0379170:exon | 40.0% | |
| !! | CTTCTGAAATTTCATGCTCC+TGG | - | chr3_1:80072051-80072070 | None:intergenic | 40.0% |
| GAGCATGAAATTTCAGAAGC+AGG | + | chr3_1:80072052-80072071 | Msa0379170:CDS | 40.0% | |
| AATTTCAGAAGCAGGATCTG+AGG | + | chr3_1:80072060-80072079 | Msa0379170:CDS | 40.0% | |
| ATGTTAGGTAACATATCCGG+AGG | + | chr3_1:80072194-80072213 | Msa0379170:intron | 40.0% | |
| TCCGCGAATTCGATATTAGA+TGG | + | chr3_1:80072460-80072479 | Msa0379170:CDS | 40.0% | |
| ! | TCAAGGTTGATTGAAGGAGA+TGG | + | chr3_1:80072552-80072571 | Msa0379170:CDS | 40.0% |
| AAAAGGGAAAGTCACCAAGA+GGG | + | chr3_1:80072625-80072644 | Msa0379170:CDS | 40.0% | |
| !! | GAAGAAGAATCTCTAGGACT+AGG | - | chr3_1:80072654-80072673 | None:intergenic | 40.0% |
| TAGTCTACCTGAATCTGACA+GGG | + | chr3_1:80072689-80072708 | Msa0379170:CDS | 40.0% | |
| TGGAAGTTTCATATCGATCC+CGG | + | chr3_1:80072773-80072792 | Msa0379170:CDS | 40.0% | |
| CTACAAGGATGCTATGATGT+TGG | + | chr3_1:80072872-80072891 | Msa0379170:CDS | 40.0% | |
| AAGGATGCTATGATGTTGGT+AGG | + | chr3_1:80072876-80072895 | Msa0379170:CDS | 40.0% | |
| TGGTTGGACTTGAGGATTAA+AGG | + | chr3_1:80073017-80073036 | Msa0379170:CDS | 40.0% | |
| GGTTGGACTTGAGGATTAAA+GGG | + | chr3_1:80073018-80073037 | Msa0379170:CDS | 40.0% | |
| AGGTGTAAGATCAGTCCAAA+AGG | + | chr3_1:80073068-80073087 | Msa0379170:CDS | 40.0% | |
| ATGCTAGTGGAACAATGCAT+TGG | + | chr3_1:80073111-80073130 | Msa0379170:CDS | 40.0% | |
| CTTTCCAACTACATAAGCAG+AGG | - | chr3_1:80073180-80073199 | None:intergenic | 40.0% | |
| CTCTGCTTATGTAGTTGGAA+AGG | + | chr3_1:80073178-80073197 | Msa0379170:CDS | 40.0% | |
| TACAGATCACAAAATCAGGG+CGG | - | chr3_1:80073226-80073245 | None:intergenic | 40.0% | |
| GCAAGTGATTCTTGAAGGAT+TGG | - | chr3_1:80073285-80073304 | None:intergenic | 40.0% | |
| ! | CACTTGCCTTTTAGTCAGAA+AGG | + | chr3_1:80073298-80073317 | Msa0379170:CDS | 40.0% |
| TAGTATGGGAACAAATAGCC+AGG | + | chr3_1:80072030-80072049 | Msa0379170:exon | 40.0% | |
| !! | CTTCTGAAATTTCATGCTCC+TGG | - | chr3_1:80072051-80072070 | None:intergenic | 40.0% |
| GAGCATGAAATTTCAGAAGC+AGG | + | chr3_1:80072052-80072071 | Msa0379170:CDS | 40.0% | |
| AATTTCAGAAGCAGGATCTG+AGG | + | chr3_1:80072060-80072079 | Msa0379170:CDS | 40.0% | |
| ATGTTAGGTAACATATCCGG+AGG | + | chr3_1:80072194-80072213 | Msa0379170:intron | 40.0% | |
| TCCGCGAATTCGATATTAGA+TGG | + | chr3_1:80072460-80072479 | Msa0379170:CDS | 40.0% | |
| ! | TCAAGGTTGATTGAAGGAGA+TGG | + | chr3_1:80072552-80072571 | Msa0379170:CDS | 40.0% |
| AAAAGGGAAAGTCACCAAGA+GGG | + | chr3_1:80072625-80072644 | Msa0379170:CDS | 40.0% | |
| !! | GAAGAAGAATCTCTAGGACT+AGG | - | chr3_1:80072654-80072673 | None:intergenic | 40.0% |
| TAGTCTACCTGAATCTGACA+GGG | + | chr3_1:80072689-80072708 | Msa0379170:CDS | 40.0% | |
| TGGAAGTTTCATATCGATCC+CGG | + | chr3_1:80072773-80072792 | Msa0379170:CDS | 40.0% | |
| CTACAAGGATGCTATGATGT+TGG | + | chr3_1:80072872-80072891 | Msa0379170:CDS | 40.0% | |
| AAGGATGCTATGATGTTGGT+AGG | + | chr3_1:80072876-80072895 | Msa0379170:CDS | 40.0% | |
| TGGTTGGACTTGAGGATTAA+AGG | + | chr3_1:80073017-80073036 | Msa0379170:CDS | 40.0% | |
| GGTTGGACTTGAGGATTAAA+GGG | + | chr3_1:80073018-80073037 | Msa0379170:CDS | 40.0% | |
| AGGTGTAAGATCAGTCCAAA+AGG | + | chr3_1:80073068-80073087 | Msa0379170:CDS | 40.0% | |
| ATGCTAGTGGAACAATGCAT+TGG | + | chr3_1:80073111-80073130 | Msa0379170:CDS | 40.0% | |
| CTTTCCAACTACATAAGCAG+AGG | - | chr3_1:80073180-80073199 | None:intergenic | 40.0% | |
| CTCTGCTTATGTAGTTGGAA+AGG | + | chr3_1:80073178-80073197 | Msa0379170:CDS | 40.0% | |
| TACAGATCACAAAATCAGGG+CGG | - | chr3_1:80073226-80073245 | None:intergenic | 40.0% | |
| GCAAGTGATTCTTGAAGGAT+TGG | - | chr3_1:80073285-80073304 | None:intergenic | 40.0% | |
| ! | CACTTGCCTTTTAGTCAGAA+AGG | + | chr3_1:80073298-80073317 | Msa0379170:CDS | 40.0% |
| GAAAAGGGAAAGTCACCAAG+AGG | + | chr3_1:80072624-80072643 | Msa0379170:CDS | 45.0% | |
| GTAGTCTACCTGAATCTGAC+AGG | + | chr3_1:80072688-80072707 | Msa0379170:CDS | 45.0% | |
| TGACAGGGCCAAGATTCAAT+TGG | + | chr3_1:80072704-80072723 | Msa0379170:CDS | 45.0% | |
| TACCTTGTTCTCTTCACTCC+AGG | + | chr3_1:80072849-80072868 | Msa0379170:CDS | 45.0% | |
| ATCATAGCATCCTTGTAGCC+TGG | - | chr3_1:80072870-80072889 | None:intergenic | 45.0% | |
| TTATCCCTGCACCAAAGACT+TGG | + | chr3_1:80072997-80073016 | Msa0379170:CDS | 45.0% | |
| CTCAAGTCCAACCAAGTCTT+TGG | - | chr3_1:80073011-80073030 | None:intergenic | 45.0% | |
| ! | CAAAGACTTGGTTGGACTTG+AGG | + | chr3_1:80073009-80073028 | Msa0379170:CDS | 45.0% |
| TCTTATCCAGCAGATGCTAG+TGG | + | chr3_1:80073098-80073117 | Msa0379170:CDS | 45.0% | |
| ATTGTTCCACTAGCATCTGC+TGG | - | chr3_1:80073107-80073126 | None:intergenic | 45.0% | |
| ATTGGATCTCAGAAGCTCAC+AGG | + | chr3_1:80073129-80073148 | Msa0379170:CDS | 45.0% | |
| CAGAAGCTCACAGGAACAAT+TGG | + | chr3_1:80073138-80073157 | Msa0379170:CDS | 45.0% | |
| GATGCCTCTGCTTATGTAGT+TGG | + | chr3_1:80073173-80073192 | Msa0379170:CDS | 45.0% | |
| TGAAGCAGCTGATGTGTCAA+AGG | - | chr3_1:80073327-80073346 | None:intergenic | 45.0% | |
| GAAAAGGGAAAGTCACCAAG+AGG | + | chr3_1:80072624-80072643 | Msa0379170:CDS | 45.0% | |
| GTAGTCTACCTGAATCTGAC+AGG | + | chr3_1:80072688-80072707 | Msa0379170:CDS | 45.0% | |
| TGACAGGGCCAAGATTCAAT+TGG | + | chr3_1:80072704-80072723 | Msa0379170:CDS | 45.0% | |
| TACCTTGTTCTCTTCACTCC+AGG | + | chr3_1:80072849-80072868 | Msa0379170:CDS | 45.0% | |
| ATCATAGCATCCTTGTAGCC+TGG | - | chr3_1:80072870-80072889 | None:intergenic | 45.0% | |
| TTATCCCTGCACCAAAGACT+TGG | + | chr3_1:80072997-80073016 | Msa0379170:CDS | 45.0% | |
| CTCAAGTCCAACCAAGTCTT+TGG | - | chr3_1:80073011-80073030 | None:intergenic | 45.0% | |
| ! | CAAAGACTTGGTTGGACTTG+AGG | + | chr3_1:80073009-80073028 | Msa0379170:CDS | 45.0% |
| TCTTATCCAGCAGATGCTAG+TGG | + | chr3_1:80073098-80073117 | Msa0379170:CDS | 45.0% | |
| ATTGTTCCACTAGCATCTGC+TGG | - | chr3_1:80073107-80073126 | None:intergenic | 45.0% | |
| ATTGGATCTCAGAAGCTCAC+AGG | + | chr3_1:80073129-80073148 | Msa0379170:CDS | 45.0% | |
| CAGAAGCTCACAGGAACAAT+TGG | + | chr3_1:80073138-80073157 | Msa0379170:CDS | 45.0% | |
| GATGCCTCTGCTTATGTAGT+TGG | + | chr3_1:80073173-80073192 | Msa0379170:CDS | 45.0% | |
| TGAAGCAGCTGATGTGTCAA+AGG | - | chr3_1:80073327-80073346 | None:intergenic | 45.0% | |
| GCTTCAGCTATGATGTGAGC+TGG | - | chr3_1:80072429-80072448 | None:intergenic | 50.0% | |
| ATCTTGGCCCTGTCAGATTC+AGG | - | chr3_1:80072699-80072718 | None:intergenic | 50.0% | |
| AGCCTGGAGTGAAGAGAACA+AGG | - | chr3_1:80072854-80072873 | None:intergenic | 50.0% | |
| TCTCTTCACTCCAGGCTACA+AGG | + | chr3_1:80072857-80072876 | Msa0379170:CDS | 50.0% | |
| ! | CCAACCAAGTCTTTGGTGCA+GGG | - | chr3_1:80073004-80073023 | None:intergenic | 50.0% |
| ! | TCCAACCAAGTCTTTGGTGC+AGG | - | chr3_1:80073005-80073024 | None:intergenic | 50.0% |
| CACATCAGCTGCTTCATCTC+AGG | + | chr3_1:80073331-80073350 | Msa0379170:CDS | 50.0% | |
| GCTTCAGCTATGATGTGAGC+TGG | - | chr3_1:80072429-80072448 | None:intergenic | 50.0% | |
| ATCTTGGCCCTGTCAGATTC+AGG | - | chr3_1:80072699-80072718 | None:intergenic | 50.0% | |
| AGCCTGGAGTGAAGAGAACA+AGG | - | chr3_1:80072854-80072873 | None:intergenic | 50.0% | |
| TCTCTTCACTCCAGGCTACA+AGG | + | chr3_1:80072857-80072876 | Msa0379170:CDS | 50.0% | |
| ! | CCAACCAAGTCTTTGGTGCA+GGG | - | chr3_1:80073004-80073023 | None:intergenic | 50.0% |
| ! | TCCAACCAAGTCTTTGGTGC+AGG | - | chr3_1:80073005-80073024 | None:intergenic | 50.0% |
| CACATCAGCTGCTTCATCTC+AGG | + | chr3_1:80073331-80073350 | Msa0379170:CDS | 50.0% | |
| CTAGGACTAGGAGTCCCTCT+TGG | - | chr3_1:80072642-80072661 | None:intergenic | 55.0% | |
| ! | CCCTGCACCAAAGACTTGGT+TGG | + | chr3_1:80073001-80073020 | Msa0379170:CDS | 55.0% |
| CTAGGACTAGGAGTCCCTCT+TGG | - | chr3_1:80072642-80072661 | None:intergenic | 55.0% | |
| ! | CCCTGCACCAAAGACTTGGT+TGG | + | chr3_1:80073001-80073020 | Msa0379170:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 80071978 | 80073364 | 80071978 | ID=Msa0379170;Name=Msa0379170 |
| chr3_1 | mRNA | 80071978 | 80073364 | 80071978 | ID=Msa0379170-mRNA-1;Parent=Msa0379170;Name=Msa0379170-mRNA-1;_AED=0.04;_eAED=0.04;_QI=56|1|0.66|1|1|1|3|0|369 |
| chr3_1 | exon | 80071978 | 80072081 | 80071978 | ID=Msa0379170-mRNA-1:exon:19869;Parent=Msa0379170-mRNA-1 |
| chr3_1 | exon | 80072201 | 80072305 | 80072201 | ID=Msa0379170-mRNA-1:exon:19870;Parent=Msa0379170-mRNA-1 |
| chr3_1 | exon | 80072408 | 80073364 | 80072408 | ID=Msa0379170-mRNA-1:exon:19871;Parent=Msa0379170-mRNA-1 |
| chr3_1 | five_prime_UTR | 80071978 | 80072033 | 80071978 | ID=Msa0379170-mRNA-1:five_prime_utr;Parent=Msa0379170-mRNA-1 |
| chr3_1 | CDS | 80072034 | 80072081 | 80072034 | ID=Msa0379170-mRNA-1:cds;Parent=Msa0379170-mRNA-1 |
| chr3_1 | CDS | 80072201 | 80072305 | 80072201 | ID=Msa0379170-mRNA-1:cds;Parent=Msa0379170-mRNA-1 |
| chr3_1 | CDS | 80072408 | 80073364 | 80072408 | ID=Msa0379170-mRNA-1:cds;Parent=Msa0379170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
