Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848270 | NP_001376403.1 | 98.441 | 513 | 8 | 0 | 1 | 513 | 1 | 513 | 0.0 | 1041 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848270 | sp|A7TUE1|CCLOP_MEDTR | 98.441 | 513 | 8 | 0 | 1 | 513 | 1 | 513 | 0.0 | 1041 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848270 | A0A396HRV5 | 98.441 | 513 | 8 | 0 | 1 | 513 | 1 | 513 | 0.0 | 1041 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034660 | Msa0848270 | 0.829072 | 6.316231e-55 | -8.615850e-47 |
| Msa0034730 | Msa0848270 | 0.817443 | 3.288644e-52 | -8.615850e-47 |
| Msa0080100 | Msa0848270 | -0.831595 | 1.527066e-55 | -8.615850e-47 |
| Msa0095910 | Msa0848270 | 0.816472 | 5.433725e-52 | -8.615850e-47 |
| Msa0107830 | Msa0848270 | 0.803263 | 3.789411e-49 | -8.615850e-47 |
| Msa0111780 | Msa0848270 | 0.828497 | 8.699428e-55 | -8.615850e-47 |
| Msa0117650 | Msa0848270 | 0.810741 | 9.914731e-51 | -8.615850e-47 |
| Msa0604200 | Msa0848270 | 0.800901 | 1.159462e-48 | -8.615850e-47 |
| Msa0637590 | Msa0848270 | 0.811673 | 6.224707e-51 | -8.615850e-47 |
| Msa0637700 | Msa0848270 | 0.826068 | 3.323131e-54 | -8.615850e-47 |
| Msa0655370 | Msa0848270 | 0.804863 | 1.760747e-49 | -8.615850e-47 |
| Msa0670360 | Msa0848270 | 0.800581 | 1.347671e-48 | -8.615850e-47 |
| Msa0675620 | Msa0848270 | 0.812378 | 4.370243e-51 | -8.615850e-47 |
| Msa0689840 | Msa0848270 | 0.805853 | 1.092426e-49 | -8.615850e-47 |
| Msa0699170 | Msa0848270 | 0.807343 | 5.293843e-50 | -8.615850e-47 |
| Msa0711860 | Msa0848270 | -0.806150 | 9.459626e-50 | -8.615850e-47 |
| Msa0713570 | Msa0848270 | -0.807686 | 4.476812e-50 | -8.615850e-47 |
| Msa0733560 | Msa0848270 | 0.823222 | 1.555616e-53 | -8.615850e-47 |
| Msa0751510 | Msa0848270 | 0.838231 | 3.252436e-57 | -8.615850e-47 |
| Msa0755550 | Msa0848270 | -0.813071 | 3.080782e-51 | -8.615850e-47 |
| Msa0766170 | Msa0848270 | 0.816321 | 5.873602e-52 | -8.615850e-47 |
| Msa0774660 | Msa0848270 | 0.805219 | 1.483959e-49 | -8.615850e-47 |
| Msa0799110 | Msa0848270 | 0.815805 | 7.658838e-52 | -8.615850e-47 |
| Msa0799120 | Msa0848270 | 0.820829 | 5.577055e-53 | -8.615850e-47 |
| Msa0802080 | Msa0848270 | 0.919948 | 2.375603e-87 | -8.615850e-47 |
| Msa0802600 | Msa0848270 | 0.819243 | 1.286766e-52 | -8.615850e-47 |
| Msa0812220 | Msa0848270 | 0.844644 | 6.656032e-59 | -8.615850e-47 |
| Msa0814160 | Msa0848270 | 0.801625 | 8.241631e-49 | -8.615850e-47 |
| Msa0829990 | Msa0848270 | 0.831675 | 1.459333e-55 | -8.615850e-47 |
| Msa0835050 | Msa0848270 | -0.804810 | 1.806344e-49 | -8.615850e-47 |
| Msa0125600 | Msa0848270 | 0.800245 | 1.577551e-48 | -8.615850e-47 |
| Msa0186240 | Msa0848270 | 0.802630 | 5.120712e-49 | -8.615850e-47 |
| Msa0225280 | Msa0848270 | -0.802202 | 6.275291e-49 | -8.615850e-47 |
| Msa0374470 | Msa0848270 | 0.801977 | 6.978729e-49 | -8.615850e-47 |
| Msa0379170 | Msa0848270 | 0.810699 | 1.012466e-50 | -8.615850e-47 |
| Msa0382050 | Msa0848270 | -0.815830 | 7.560264e-52 | -8.615850e-47 |
| Msa0405200 | Msa0848270 | 0.830967 | 2.178756e-55 | -8.615850e-47 |
| Msa0405210 | Msa0848270 | 0.800078 | 1.706173e-48 | -8.615850e-47 |
| Msa0414480 | Msa0848270 | 0.818095 | 2.344329e-52 | -8.615850e-47 |
| Msa0423220 | Msa0848270 | 0.804574 | 2.023582e-49 | -8.615850e-47 |
| Msa0423630 | Msa0848270 | 0.800957 | 1.129405e-48 | -8.615850e-47 |
| Msa0431550 | Msa0848270 | -0.810387 | 1.182200e-50 | -8.615850e-47 |
| Msa0433090 | Msa0848270 | 0.805226 | 1.478403e-49 | -8.615850e-47 |
| Msa0448310 | Msa0848270 | 0.802282 | 6.040672e-49 | -8.615850e-47 |
| Msa0449490 | Msa0848270 | 0.835819 | 1.344269e-56 | -8.615850e-47 |
| Msa0449500 | Msa0848270 | 0.815039 | 1.133703e-51 | -8.615850e-47 |
| Msa0464310 | Msa0848270 | 0.816104 | 6.566358e-52 | -8.615850e-47 |
| Msa0475140 | Msa0848270 | 0.804500 | 2.096808e-49 | -8.615850e-47 |
| Msa0476560 | Msa0848270 | -0.802078 | 6.653689e-49 | -8.615850e-47 |
| Msa0478080 | Msa0848270 | 0.822796 | 1.955690e-53 | -8.615850e-47 |
| Msa0266330 | Msa0848270 | -0.810527 | 1.102700e-50 | -8.615850e-47 |
| Msa0267700 | Msa0848270 | 0.809393 | 1.934841e-50 | -8.615850e-47 |
| Msa0275730 | Msa0848270 | 0.804049 | 2.603215e-49 | -8.615850e-47 |
| Msa0298820 | Msa0848270 | -0.818955 | 1.496281e-52 | -8.615850e-47 |
| Msa0341950 | Msa0848270 | -0.812925 | 3.316954e-51 | -8.615850e-47 |
| Msa0345050 | Msa0848270 | 0.816848 | 4.475158e-52 | -8.615850e-47 |
| Msa0346170 | Msa0848270 | 0.803802 | 2.929116e-49 | -8.615850e-47 |
| Msa0354600 | Msa0848270 | 0.802057 | 6.721194e-49 | -8.615850e-47 |
| Msa0492330 | Msa0848270 | -0.823599 | 1.269863e-53 | -8.615850e-47 |
| Msa0497680 | Msa0848270 | 0.824173 | 9.315287e-54 | -8.615850e-47 |
| Msa0510870 | Msa0848270 | 0.802084 | 6.634185e-49 | -8.615850e-47 |
| Msa0517260 | Msa0848270 | 0.809535 | 1.803753e-50 | -8.615850e-47 |
| Msa0522170 | Msa0848270 | 0.803836 | 2.882310e-49 | -8.615850e-47 |
| Msa0524710 | Msa0848270 | 0.809749 | 1.622729e-50 | -8.615850e-47 |
| Msa0535570 | Msa0848270 | 0.813124 | 3.000220e-51 | -8.615850e-47 |
| Msa0561450 | Msa0848270 | -0.808693 | 2.732170e-50 | -8.615850e-47 |
| Msa0597170 | Msa0848270 | 0.816927 | 4.295785e-52 | -8.615850e-47 |
| Msa0597800 | Msa0848270 | 0.803533 | 3.331380e-49 | -8.615850e-47 |
| Msa0597820 | Msa0848270 | 0.809118 | 2.216045e-50 | -8.615850e-47 |
| Msa0848270 | Msa0868510 | -0.805059 | 1.602706e-49 | -8.615850e-47 |
| Msa0848270 | Msa0868520 | -0.800479 | 1.414046e-48 | -8.615850e-47 |
| Msa0848270 | Msa0874750 | 0.821014 | 5.055449e-53 | -8.615850e-47 |
| Msa0848270 | Msa0933320 | -0.800882 | 1.169823e-48 | -8.615850e-47 |
| Msa0848270 | Msa0935840 | -0.813147 | 2.965224e-51 | -8.615850e-47 |
| Msa0848270 | Msa0941420 | -0.803473 | 3.427931e-49 | -8.615850e-47 |
| Msa0848270 | Msa0973010 | -0.818485 | 1.912199e-52 | -8.615850e-47 |
| Msa0848270 | Msa0975950 | 0.800822 | 1.203306e-48 | -8.615850e-47 |
| Msa0848270 | Msa0978540 | -0.800988 | 1.112945e-48 | -8.615850e-47 |
| Msa0848270 | Msa0978550 | -0.806224 | 9.124365e-50 | -8.615850e-47 |
| Msa0848270 | Msa0978560 | -0.801807 | 7.564616e-49 | -8.615850e-47 |
| Msa0848270 | Msa0979540 | 0.803265 | 3.786577e-49 | -8.615850e-47 |
| Msa0848270 | Msa1002550 | -0.802964 | 4.370304e-49 | -8.615850e-47 |
| Msa0848270 | Msa1003730 | 0.824630 | 7.274771e-54 | -8.615850e-47 |
| Msa0848270 | Msa1003920 | 0.818597 | 1.803864e-52 | -8.615850e-47 |
| Msa0848270 | Msa1028890 | -0.802257 | 6.112390e-49 | -8.615850e-47 |
| Msa0848270 | Msa1029860 | 0.830221 | 3.317757e-55 | -8.615850e-47 |
| Msa0848270 | Msa1031060 | 0.801050 | 1.081263e-48 | -8.615850e-47 |
| Msa0848270 | Msa1035050 | 0.817241 | 3.651656e-52 | -8.615850e-47 |
| Msa0848270 | Msa1049400 | 0.803401 | 3.548102e-49 | -8.615850e-47 |
| Msa0848270 | Msa1062060 | 0.803438 | 3.485743e-49 | -8.615850e-47 |
| Msa0848270 | Msa1062070 | 0.835835 | 1.331399e-56 | -8.615850e-47 |
| Msa0848270 | Msa1075090 | 0.816445 | 5.511185e-52 | -8.615850e-47 |
| Msa0848270 | Msa1078120 | -0.802861 | 4.589871e-49 | -8.615850e-47 |
| Msa0848270 | Msa1085820 | 0.801863 | 7.365165e-49 | -8.615850e-47 |
| Msa0848270 | Msa1099650 | 0.810150 | 1.329791e-50 | -8.615850e-47 |
| Msa0848270 | Msa1107220 | 0.808068 | 3.713834e-50 | -8.615850e-47 |
| Msa0848270 | Msa1107250 | 0.824856 | 6.435566e-54 | -8.615850e-47 |
| Msa0848270 | Msa1108560 | 0.810834 | 9.463398e-51 | -8.615850e-47 |
| Msa0848270 | Msa1119670 | 0.805869 | 1.083865e-49 | -8.615850e-47 |
| Msa0848270 | Msa1120960 | 0.833905 | 4.077011e-56 | -8.615850e-47 |
| Msa0848270 | Msa1136630 | 0.824318 | 8.611695e-54 | -8.615850e-47 |
| Msa0848270 | Msa1150740 | 0.804970 | 1.672335e-49 | -8.615850e-47 |
| Msa0848270 | Msa1150750 | 0.815831 | 7.557927e-52 | -8.615850e-47 |
| Msa0848270 | Msa1162870 | 0.801498 | 8.754536e-49 | -8.615850e-47 |
| Msa0848270 | Msa1185270 | 0.801275 | 9.725484e-49 | -8.615850e-47 |
| Msa0848270 | Msa1186150 | 0.830004 | 3.748985e-55 | -8.615850e-47 |
| Msa0848270 | Msa1186430 | 0.806608 | 7.573481e-50 | -8.615850e-47 |
| Msa0848270 | Msa1191270 | 0.836958 | 6.895330e-57 | -8.615850e-47 |
| Msa0848270 | Msa1202110 | 0.810099 | 1.363874e-50 | -8.615850e-47 |
| Msa0848270 | Msa1203320 | -0.809273 | 2.052601e-50 | -8.615850e-47 |
| Msa0848270 | Msa1228260 | -0.802900 | 4.503442e-49 | -8.615850e-47 |
| Msa0848270 | Msa1239050 | 0.809321 | 2.004733e-50 | -8.615850e-47 |
| Msa0848270 | Msa1239190 | 0.807357 | 5.258205e-50 | -8.615850e-47 |
| Msa0848270 | Msa1239210 | 0.804954 | 1.685373e-49 | -8.615850e-47 |
| Msa0848270 | Msa1240710 | 0.803585 | 3.248975e-49 | -8.615850e-47 |
| Msa0848270 | Msa1254870 | 0.812726 | 3.667821e-51 | -8.615850e-47 |
| Msa0848270 | Msa1259570 | 0.801134 | 1.039177e-48 | -8.615850e-47 |
| Msa0848270 | Msa1271220 | -0.800600 | 1.335920e-48 | -8.615850e-47 |
| Msa0848270 | Msa1279060 | 0.814822 | 1.266736e-51 | -8.615850e-47 |
| Msa0848270 | Msa1280460 | 0.814419 | 1.555269e-51 | -8.615850e-47 |
| Msa0848270 | Msa1281650 | 0.802947 | 4.404487e-49 | -8.615850e-47 |
| Msa0848270 | Msa1311170 | 0.800410 | 1.460224e-48 | -8.615850e-47 |
| Msa0848270 | Msa1319760 | 0.810634 | 1.045345e-50 | -8.615850e-47 |
| Msa0848270 | Msa1320160 | 0.807760 | 4.319415e-50 | -8.615850e-47 |
| Msa0848270 | Msa1328430 | 0.812378 | 4.368491e-51 | -8.615850e-47 |
| Msa0848270 | Msa1338510 | 0.808299 | 3.316289e-50 | -8.615850e-47 |
| Msa0848270 | Msa1355340 | 0.809314 | 2.012081e-50 | -8.615850e-47 |
| Msa0848270 | Msa1357570 | 0.810842 | 9.426227e-51 | -8.615850e-47 |
| Msa0848270 | Msa1364690 | 0.816059 | 6.722964e-52 | -8.615850e-47 |
| Msa0848270 | Msa1399030 | 0.943600 | 8.980795e-103 | -8.615850e-47 |
| Msa0848270 | Msa1405040 | -0.834051 | 3.747249e-56 | -8.615850e-47 |
| Msa0848270 | Msa1417220 | 0.800106 | 1.683497e-48 | -8.615850e-47 |
| Msa0848270 | Msa1437590 | 0.811642 | 6.321650e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848270 | MtrunA17_Chr5g0409341 | 98.441 | 513 | 8 | 0 | 1 | 513 | 1 | 513 | 0.0 | 1041 |
| Msa0848270 | MtrunA17_Chr8g0369511 | 52.490 | 522 | 150 | 11 | 1 | 513 | 1 | 433 | 2.52e-148 | 431 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 96 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAATCTAGTAACTTGTTTC+TGG | 0.134219 | 5_4:+32654604 | Msa0848270:CDS |
| AAGCTGTTCCGCCTTGTATT+TGG | 0.236796 | 5_4:-32655715 | None:intergenic |
| TCTGTAACATCAGCTGTTTC+AGG | 0.276307 | 5_4:+32656370 | Msa0848270:CDS |
| TTAATTTATCTTTCATGAAT+AGG | 0.300235 | 5_4:+32657197 | Msa0848270:CDS |
| CTGCAGCTTCTTTCTCGACT+TGG | 0.326898 | 5_4:-32655496 | None:intergenic |
| GAGACATAAATGTGCCCTTT+TGG | 0.331047 | 5_4:-32655361 | None:intergenic |
| CTTCTTCATTAAAGGCTGAT+TGG | 0.338242 | 5_4:-32655562 | None:intergenic |
| AGGATTGGATTCTATGTTCA+TGG | 0.343637 | 5_4:+32655253 | Msa0848270:CDS |
| GACTACGTCATTTACCTGAT+TGG | 0.369428 | 5_4:-32654483 | None:intergenic |
| TCTTGTGTAAGTATGCTAAA+AGG | 0.372411 | 5_4:+32655446 | Msa0848270:CDS |
| AAGAGTTTGATTTGAATTGC+TGG | 0.390171 | 5_4:-32655813 | None:intergenic |
| GAAAGACTTCTATCAGAAAC+TGG | 0.395489 | 5_4:+32657404 | Msa0848270:CDS |
| TTCTCAAGCACCACAAGGAT+TGG | 0.396713 | 5_4:+32655238 | Msa0848270:CDS |
| TACCTTCAACACACATCAAT+TGG | 0.399412 | 5_4:+32655403 | Msa0848270:CDS |
| CCTTTAATGAAGAAGAAAAC+TGG | 0.405991 | 5_4:+32655570 | Msa0848270:CDS |
| ATACAAGGCGGAACAGCTTC+CGG | 0.408657 | 5_4:+32655719 | Msa0848270:CDS |
| CAAAGTTTGTGGTTCCTTCA+AGG | 0.409467 | 5_4:-32655664 | None:intergenic |
| GCATGATACTAACACTATAA+AGG | 0.416421 | 5_4:+32655283 | Msa0848270:CDS |
| GATTGCAATTCTCTATCAAC+TGG | 0.426346 | 5_4:-32654587 | None:intergenic |
| TGAAGACTTGGCAGATGAAA+AGG | 0.431976 | 5_4:+32657361 | Msa0848270:CDS |
| AGGAAAAGTTTAGAAAGATA+TGG | 0.432079 | 5_4:+32656346 | Msa0848270:CDS |
| TTCAAGGGTTTGCATGACTC+CGG | 0.434815 | 5_4:-32655648 | None:intergenic |
| TTAAAGGCTGATTGGAAAAG+AGG | 0.437735 | 5_4:-32655554 | None:intergenic |
| CATTGTTTCTGAGGAGGGTA+AGG | 0.441315 | 5_4:-32657458 | None:intergenic |
| TCTAAGCCAGATGAGATTAC+TGG | 0.442773 | 5_4:-32655776 | None:intergenic |
| GCTGCACCAGTAATCTCATC+TGG | 0.445463 | 5_4:+32655770 | Msa0848270:CDS |
| TGCATATCTGAGGGAATTGT+TGG | 0.448622 | 5_4:-32657121 | None:intergenic |
| GCACCTACCATGGAGATGTT+AGG | 0.459529 | 5_4:+32653680 | Msa0848270:CDS |
| ACAGTGATGGAGAGTCCTAT+TGG | 0.472049 | 5_4:+32653650 | Msa0848270:CDS |
| GTGTGAGTTACCAAGCCAAA+AGG | 0.477688 | 5_4:+32655346 | Msa0848270:CDS |
| AGGTGTCAGAGAACAGATAA+TGG | 0.481125 | 5_4:+32656195 | Msa0848270:intron |
| AAACTCTTGGTGATAGCTCA+TGG | 0.483896 | 5_4:+32655828 | Msa0848270:CDS |
| AGCAATTCAAATCAAACTCT+TGG | 0.484525 | 5_4:+32655815 | Msa0848270:CDS |
| CAAAAGCTAGTAAACGTTCA+AGG | 0.486480 | 5_4:+32655599 | Msa0848270:CDS |
| GCTTCTTGTCATTCGTTGAT+CGG | 0.487672 | 5_4:-32654725 | None:intergenic |
| TAGTAACTTGTTTCTGGCCA+AGG | 0.489457 | 5_4:+32654610 | Msa0848270:CDS |
| AAAGTTTGTGGTTCCTTCAA+GGG | 0.489561 | 5_4:-32655663 | None:intergenic |
| GGAGTCATGCAAACCCTTGA+AGG | 0.495939 | 5_4:+32655650 | Msa0848270:CDS |
| GAGAAAGAAGCTGCAGAAGA+TGG | 0.498928 | 5_4:+32655503 | Msa0848270:CDS |
| ACTGATCAAGTTAACGATCC+CGG | 0.510257 | 5_4:+32655629 | Msa0848270:CDS |
| AACCAATTGATGTGTGTTGA+AGG | 0.511759 | 5_4:-32655405 | None:intergenic |
| AGTCTTCATTCTGCTTCTGA+AGG | 0.513732 | 5_4:-32657346 | None:intergenic |
| GTAGGTGCCGACATACCAAT+AGG | 0.513953 | 5_4:-32653665 | None:intergenic |
| AGAGTTTGATTTGAATTGCT+GGG | 0.514038 | 5_4:-32655812 | None:intergenic |
| TCAAGGGTTTGCATGACTCC+GGG | 0.516129 | 5_4:-32655647 | None:intergenic |
| ACCGTCTAAGACAAAGTTTG+TGG | 0.516294 | 5_4:-32655675 | None:intergenic |
| TGAACAAACAAAGCAGATAG+AGG | 0.517837 | 5_4:+32657322 | Msa0848270:CDS |
| GAAGTCTTTCAATCTCTTCG+AGG | 0.521857 | 5_4:-32657391 | None:intergenic |
| AGTGTTGAAATGGAAGGGAG+AGG | 0.523586 | 5_4:+32653581 | None:intergenic |
| ACCACAAACTTTGTCTTAGA+CGG | 0.524195 | 5_4:+32655674 | Msa0848270:CDS |
| TACTACATTGTTTCTGAGGA+GGG | 0.529395 | 5_4:-32657463 | None:intergenic |
| TTTGAAAAGCTCTTCACTAT+CGG | 0.529699 | 5_4:-32653732 | None:intergenic |
| GTGATCGAACTTCTTTCTCA+AGG | 0.531323 | 5_4:-32657168 | None:intergenic |
| GGGATACAATTCATCAAGCA+TGG | 0.541005 | 5_4:+32654079 | Msa0848270:intron |
| ATAGTGTTAGTATCATGCTC+AGG | 0.542347 | 5_4:-32655278 | None:intergenic |
| GTTATTCTTGAAGACAGTGA+TGG | 0.545289 | 5_4:+32653637 | Msa0848270:CDS |
| CACATTGGTGTGGCTTCAGA+AGG | 0.545682 | 5_4:+32654390 | Msa0848270:CDS |
| TGTGAGTTACCAAGCCAAAA+GGG | 0.546561 | 5_4:+32655347 | Msa0848270:CDS |
| CAAGATAGCTTGCATATCTG+AGG | 0.548218 | 5_4:-32657131 | None:intergenic |
| GAAGGTAGACGAAGATGAGT+TGG | 0.548398 | 5_4:-32655387 | None:intergenic |
| GCAGAAGATTCACTTTGAGA+AGG | 0.550309 | 5_4:-32655746 | None:intergenic |
| TTTGAAGTGTTGAAATGGAA+GGG | 0.553605 | 5_4:+32653576 | None:intergenic |
| TGAGTACTACATTGTTTCTG+AGG | 0.568603 | 5_4:-32657467 | None:intergenic |
| CTTTGAAGTGTTGAAATGGA+AGG | 0.568694 | 5_4:+32653575 | None:intergenic |
| TTAACAGTCGTTTGTCGAAG+AGG | 0.571443 | 5_4:+32654105 | Msa0848270:CDS |
| TGGTATGTCGGCACCTACCA+TGG | 0.573087 | 5_4:+32653670 | Msa0848270:CDS |
| TTCACTTTGAGAAGGTTCAC+CGG | 0.574460 | 5_4:-32655738 | None:intergenic |
| ATGCAGAATGGCTGAAGCAA+AGG | 0.574640 | 5_4:+32657084 | Msa0848270:intron |
| GGAGAGTCCTATTGGTATGT+CGG | 0.580657 | 5_4:+32653658 | Msa0848270:CDS |
| GTAGACGAAGATGAGTTGGA+TGG | 0.580937 | 5_4:-32655383 | None:intergenic |
| TCAGAAGCAGAATGAAGACT+TGG | 0.585409 | 5_4:+32657349 | Msa0848270:CDS |
| TAATCTGAAAGATGACAGAA+AGG | 0.588212 | 5_4:+32656219 | Msa0848270:CDS |
| TGACTTTGCAGATGGCAAGA+TGG | 0.588963 | 5_4:+32656933 | Msa0848270:intron |
| TTGGTAACTCACACATGGAA+AGG | 0.598185 | 5_4:-32655337 | None:intergenic |
| CTTGAATCCTAACATCTCCA+TGG | 0.600847 | 5_4:-32653687 | None:intergenic |
| AATCCTAACATCTCCATGGT+AGG | 0.603571 | 5_4:-32653683 | None:intergenic |
| CATACCGCAATTCAGAAGAC+CGG | 0.607774 | 5_4:-32654747 | None:intergenic |
| GTACTACATTGTTTCTGAGG+AGG | 0.610030 | 5_4:-32657464 | None:intergenic |
| AAGATAGCTTGCATATCTGA+GGG | 0.612623 | 5_4:-32657130 | None:intergenic |
| TTGGCTTGGTAACTCACACA+TGG | 0.615019 | 5_4:-32655342 | None:intergenic |
| GTCTTTCAATCTCTTCGAGG+AGG | 0.616589 | 5_4:-32657388 | None:intergenic |
| GGATACAATTCATCAAGCAT+GGG | 0.621171 | 5_4:+32654080 | Msa0848270:CDS |
| AGCACTCAAAATAAAGTCAG+AGG | 0.625989 | 5_4:+32655866 | Msa0848270:CDS |
| CAAAATTCTCAAGCACCACA+AGG | 0.626007 | 5_4:+32655233 | Msa0848270:CDS |
| CTGGCTAACAAATGATCAAG+AGG | 0.627025 | 5_4:+32653757 | Msa0848270:CDS |
| TGATAGCTCATGGAAACAAG+TGG | 0.633280 | 5_4:+32655838 | Msa0848270:CDS |
| TCGTTGATCGGTAATAAACC+AGG | 0.637190 | 5_4:-32654713 | None:intergenic |
| AACATAGAATCCAATCCTTG+TGG | 0.641035 | 5_4:-32655248 | None:intergenic |
| AATCAAACGAACCAAATACA+AGG | 0.647041 | 5_4:+32655704 | Msa0848270:CDS |
| GATAGCTCATGGAAACAAGT+GGG | 0.648553 | 5_4:+32655839 | Msa0848270:CDS |
| GAAGCCGGTCTTCTGAATTG+CGG | 0.650623 | 5_4:+32654743 | Msa0848270:CDS |
| ATCAACGAATGACAAGAAGC+CGG | 0.651414 | 5_4:+32654728 | Msa0848270:CDS |
| ATGTCTAATCAGCAACACAT+TGG | 0.663184 | 5_4:+32654375 | Msa0848270:CDS |
| TCTGGCTTAGATGCATGTGA+AGG | 0.667178 | 5_4:+32655788 | Msa0848270:CDS |
| TAATCAGCAACACATTGGTG+TGG | 0.670125 | 5_4:+32654380 | Msa0848270:CDS |
| CAAACGAACCAAATACAAGG+CGG | 0.780342 | 5_4:+32655707 | Msa0848270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGATAAAAAATGAAAATCT+AGG | + | chr5_4:32653868-32653887 | Msa0848270:intron | 15.0% |
| !!! | TAGTTCTTAAATTTTGAAAA+AGG | + | chr5_4:32655964-32655983 | Msa0848270:intron | 15.0% |
| !!! | AAATTTTGAAAAAGGTAATA+TGG | + | chr5_4:32655972-32655991 | Msa0848270:intron | 15.0% |
| !!! | AATTTTGACTAATAACTTTA+TGG | + | chr5_4:32656297-32656316 | Msa0848270:intron | 15.0% |
| !!! | ATTTTGACTAATAACTTTAT+GGG | + | chr5_4:32656298-32656317 | Msa0848270:intron | 15.0% |
| !! | CATATAATCTTGAAAATAAA+TGG | - | chr5_4:32656399-32656418 | None:intergenic | 15.0% |
| !!! | CATTTATTTTCAAGATTATA+TGG | + | chr5_4:32656397-32656416 | Msa0848270:intron | 15.0% |
| !! | AAGCAATATTCATTAATAAA+GGG | + | chr5_4:32656801-32656820 | Msa0848270:intron | 15.0% |
| !! | TTAATTTATCTTTCATGAAT+AGG | + | chr5_4:32657197-32657216 | Msa0848270:CDS | 15.0% |
| !! | AAATATAAATTCTTCGACTA+TGG | + | chr5_4:32653966-32653985 | Msa0848270:intron | 20.0% |
| !!! | CACATTCTAAAGAATTAATT+GGG | + | chr5_4:32654179-32654198 | Msa0848270:intron | 20.0% |
| !! | TGTAGTTACATATTACAATA+AGG | - | chr5_4:32654332-32654351 | None:intergenic | 20.0% |
| !!! | ATGCTTACAAAATAACTTTT+TGG | + | chr5_4:32654431-32654450 | Msa0848270:CDS | 20.0% |
| !! | TTCAATATTGTAACTTAGTT+TGG | + | chr5_4:32654544-32654563 | Msa0848270:intron | 20.0% |
| !! | TATGAAGATTTATTGAACTA+AGG | - | chr5_4:32654664-32654683 | None:intergenic | 20.0% |
| !! | TTTATACATAACCACTTATA+TGG | + | chr5_4:32655132-32655151 | Msa0848270:intron | 20.0% |
| !! | TAACTATTAGTATATGACTA+TGG | + | chr5_4:32655894-32655913 | Msa0848270:intron | 20.0% |
| !!! | CTAATTTTGTATCATTTCTT+TGG | - | chr5_4:32656068-32656087 | None:intergenic | 20.0% |
| !! | ATACATGTTATTATAAGAGT+AGG | - | chr5_4:32656253-32656272 | None:intergenic | 20.0% |
| !! | AGTTATTAGTCAAAATTTCA+AGG | - | chr5_4:32656294-32656313 | None:intergenic | 20.0% |
| !!! | TTTTGACTAATAACTTTATG+GGG | + | chr5_4:32656299-32656318 | Msa0848270:intron | 20.0% |
| !!! | GACGATAATTTTAGAAAATT+CGG | + | chr5_4:32656490-32656509 | Msa0848270:intron | 20.0% |
| !!! | ACGATAATTTTAGAAAATTC+GGG | + | chr5_4:32656491-32656510 | Msa0848270:intron | 20.0% |
| !! | GAAGCAATATTCATTAATAA+AGG | + | chr5_4:32656800-32656819 | Msa0848270:intron | 20.0% |
| !! | AGCAATATTCATTAATAAAG+GGG | + | chr5_4:32656802-32656821 | Msa0848270:intron | 20.0% |
| !!! | AACATACAATACAATTTTTC+AGG | + | chr5_4:32657291-32657310 | Msa0848270:intron | 20.0% |
| !!! | CATTTTTTATCATAGTCAAC+TGG | - | chr5_4:32653861-32653880 | None:intergenic | 25.0% |
| ! | TGTAATCATAAACGTAGAAA+AGG | - | chr5_4:32654021-32654040 | None:intergenic | 25.0% |
| ! | CAAAGATACATCAAATTCAA+AGG | - | chr5_4:32654047-32654066 | None:intergenic | 25.0% |
| !! | TATCTTTGTTTCTTAAACCA+GGG | + | chr5_4:32654059-32654078 | Msa0848270:intron | 25.0% |
| !! | GCACATTCTAAAGAATTAAT+TGG | + | chr5_4:32654178-32654197 | Msa0848270:intron | 25.0% |
| ! | ATACTTATAATAGAAAGCCT+AGG | - | chr5_4:32654221-32654240 | None:intergenic | 25.0% |
| ! | TATGAAAATGAACAAGAATC+AGG | - | chr5_4:32654303-32654322 | None:intergenic | 25.0% |
| ! | AGTTTGATATTAACATACCT+TGG | - | chr5_4:32654630-32654649 | None:intergenic | 25.0% |
| ! | ATATTGTTTGAGAAAACTTG+TGG | + | chr5_4:32655004-32655023 | Msa0848270:intron | 25.0% |
| !!! | TTTGTTTTCATAAGCTATTC+TGG | - | chr5_4:32655059-32655078 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+TGG | + | chr5_4:32655166-32655185 | Msa0848270:intron | 25.0% |
| !! | GAAGAACTTGCAAATTTTAA+TGG | + | chr5_4:32655305-32655324 | Msa0848270:CDS | 25.0% |
| ! | TTTGAAAAAGGTAATATGGA+TGG | + | chr5_4:32655976-32655995 | Msa0848270:intron | 25.0% |
| ! | GAAATTGAATCTGTTCAATA+TGG | + | chr5_4:32656016-32656035 | Msa0848270:intron | 25.0% |
| ! | TTTCTGTTCCTACATATTTA+TGG | - | chr5_4:32656099-32656118 | None:intergenic | 25.0% |
| ! | TTTGACTAATAACTTTATGG+GGG | + | chr5_4:32656300-32656319 | Msa0848270:intron | 25.0% |
| ! | AGGAAAAGTTTAGAAAGATA+TGG | + | chr5_4:32656346-32656365 | Msa0848270:CDS | 25.0% |
| ! | AAAATTATCGTCAAAAGCTT+CGG | - | chr5_4:32656482-32656501 | None:intergenic | 25.0% |
| ! | AGTTACAAGTATCTTAACAT+AGG | - | chr5_4:32656601-32656620 | None:intergenic | 25.0% |
| !! | ATTTTGCTAGTAACTTTATC+TGG | + | chr5_4:32656716-32656735 | Msa0848270:intron | 25.0% |
| !! | ACATGCTAGATTAAAAGTAT+TGG | + | chr5_4:32656826-32656845 | Msa0848270:intron | 25.0% |
| ! | GTTCTTATCTAATAATGCAT+TGG | + | chr5_4:32657032-32657051 | Msa0848270:intron | 25.0% |
| ! | GCATTACTATTTATCTTAGT+AGG | - | chr5_4:32657238-32657257 | None:intergenic | 25.0% |
| !!! | TACAATACAATTTTTCAGGA+AGG | + | chr5_4:32657295-32657314 | Msa0848270:intron | 25.0% |
| TTTGAAAAGCTCTTCACTAT+CGG | - | chr5_4:32653735-32653754 | None:intergenic | 30.0% | |
| GTTCTTCAACTTTATATCTC+TGG | + | chr5_4:32653809-32653828 | Msa0848270:intron | 30.0% | |
| ATGAAAAAGACTGAGATAGA+TGG | - | chr5_4:32653895-32653914 | None:intergenic | 30.0% | |
| ! | GTATCTTTGTTTCTTAAACC+AGG | + | chr5_4:32654058-32654077 | Msa0848270:intron | 30.0% |
| ! | GTGAATTCAATTTTCCAATC+AGG | + | chr5_4:32654469-32654488 | Msa0848270:CDS | 30.0% |
| AGATGTTTCATTATCAATGC+AGG | + | chr5_4:32654690-32654709 | Msa0848270:intron | 30.0% | |
| !!! | GGTTTTGAAGAGAATATACA+AGG | - | chr5_4:32654782-32654801 | None:intergenic | 30.0% |
| GCATGATACTAACACTATAA+AGG | + | chr5_4:32655283-32655302 | Msa0848270:CDS | 30.0% | |
| TCTTGTGTAAGTATGCTAAA+AGG | + | chr5_4:32655446-32655465 | Msa0848270:CDS | 30.0% | |
| ! | CCAGTTTTCTTCTTCATTAA+AGG | - | chr5_4:32655573-32655592 | None:intergenic | 30.0% |
| CCTTTAATGAAGAAGAAAAC+TGG | + | chr5_4:32655570-32655589 | Msa0848270:CDS | 30.0% | |
| AATCAAACGAACCAAATACA+AGG | + | chr5_4:32655704-32655723 | Msa0848270:CDS | 30.0% | |
| !! | AGAGTTTGATTTGAATTGCT+GGG | - | chr5_4:32655815-32655834 | None:intergenic | 30.0% |
| !! | AAGAGTTTGATTTGAATTGC+TGG | - | chr5_4:32655816-32655835 | None:intergenic | 30.0% |
| AGCAATTCAAATCAAACTCT+TGG | + | chr5_4:32655815-32655834 | Msa0848270:CDS | 30.0% | |
| ! | TGTATCATTTCTTTGGTGAT+TGG | - | chr5_4:32656061-32656080 | None:intergenic | 30.0% |
| TAATCTGAAAGATGACAGAA+AGG | + | chr5_4:32656219-32656238 | Msa0848270:CDS | 30.0% | |
| !! | AAAATTCGGGTTCTATTTTC+CGG | + | chr5_4:32656504-32656523 | Msa0848270:intron | 30.0% |
| ! | GTCATTCACAATTATTTCTC+CGG | - | chr5_4:32656526-32656545 | None:intergenic | 30.0% |
| !!! | AGGATTTGTTGTCTTTTCTT+TGG | - | chr5_4:32656581-32656600 | None:intergenic | 30.0% |
| CATCAAATTATGTGCATAGA+AGG | - | chr5_4:32656885-32656904 | None:intergenic | 30.0% | |
| ! | GCAAAGTCATTTGGTTTAAA+AGG | - | chr5_4:32656922-32656941 | None:intergenic | 30.0% |
| AGATGGATAACACAAAAAAG+CGG | + | chr5_4:32656950-32656969 | Msa0848270:CDS | 30.0% | |
| ACTCTCTTAATCTGTTTGTA+AGG | - | chr5_4:32657010-32657029 | None:intergenic | 30.0% | |
| GTTATTCTTGAAGACAGTGA+TGG | + | chr5_4:32653637-32653656 | Msa0848270:CDS | 35.0% | |
| TCGACTATGGAACTTGTAAT+TGG | + | chr5_4:32653979-32653998 | Msa0848270:intron | 35.0% | |
| GGATACAATTCATCAAGCAT+GGG | + | chr5_4:32654080-32654099 | Msa0848270:CDS | 35.0% | |
| GTGAATTCCAAAAGTAACCT+AGG | + | chr5_4:32654201-32654220 | Msa0848270:intron | 35.0% | |
| !! | TAGAAAGCCTAGGTTACTTT+TGG | - | chr5_4:32654211-32654230 | None:intergenic | 35.0% |
| ATGTCTAATCAGCAACACAT+TGG | + | chr5_4:32654375-32654394 | Msa0848270:CDS | 35.0% | |
| GATTGCAATTCTCTATCAAC+TGG | - | chr5_4:32654590-32654609 | None:intergenic | 35.0% | |
| !! | GCAATCTAGTAACTTGTTTC+TGG | + | chr5_4:32654604-32654623 | Msa0848270:CDS | 35.0% |
| TCTTCAAAACCATGTTCATC+TGG | + | chr5_4:32654791-32654810 | Msa0848270:intron | 35.0% | |
| TTGAGCAGTTGAAATTACTC+AGG | - | chr5_4:32654911-32654930 | None:intergenic | 35.0% | |
| ! | AAGCTATTCTGGAGAACTTA+TGG | - | chr5_4:32655048-32655067 | None:intergenic | 35.0% |
| CTAAACGCTTACCATATAAG+TGG | - | chr5_4:32655146-32655165 | None:intergenic | 35.0% | |
| CTAACAGATTAAGCCATGTT+TGG | - | chr5_4:32655182-32655201 | None:intergenic | 35.0% | |
| CAAACATGGCTTAATCTGTT+AGG | + | chr5_4:32655180-32655199 | Msa0848270:intron | 35.0% | |
| AACATAGAATCCAATCCTTG+TGG | - | chr5_4:32655251-32655270 | None:intergenic | 35.0% | |
| AGGATTGGATTCTATGTTCA+TGG | + | chr5_4:32655253-32655272 | Msa0848270:CDS | 35.0% | |
| ATAGTGTTAGTATCATGCTC+AGG | - | chr5_4:32655281-32655300 | None:intergenic | 35.0% | |
| TACCTTCAACACACATCAAT+TGG | + | chr5_4:32655403-32655422 | Msa0848270:CDS | 35.0% | |
| AACCAATTGATGTGTGTTGA+AGG | - | chr5_4:32655408-32655427 | None:intergenic | 35.0% | |
| TTAAAGGCTGATTGGAAAAG+AGG | - | chr5_4:32655557-32655576 | None:intergenic | 35.0% | |
| CTTCTTCATTAAAGGCTGAT+TGG | - | chr5_4:32655565-32655584 | None:intergenic | 35.0% | |
| CAAAAGCTAGTAAACGTTCA+AGG | + | chr5_4:32655599-32655618 | Msa0848270:CDS | 35.0% | |
| AAAGTTTGTGGTTCCTTCAA+GGG | - | chr5_4:32655666-32655685 | None:intergenic | 35.0% | |
| ACCACAAACTTTGTCTTAGA+CGG | + | chr5_4:32655674-32655693 | Msa0848270:CDS | 35.0% | |
| AGCACTCAAAATAAAGTCAG+AGG | + | chr5_4:32655866-32655885 | Msa0848270:CDS | 35.0% | |
| AGTCTCCACCATAAATATGT+AGG | + | chr5_4:32656088-32656107 | Msa0848270:intron | 35.0% | |
| CTGTTCCTACATATTTATGG+TGG | - | chr5_4:32656096-32656115 | None:intergenic | 35.0% | |
| TAACTTTATGGGGGTTAATC+TGG | + | chr5_4:32656309-32656328 | Msa0848270:intron | 35.0% | |
| ! | TGAAGCAAACATTGAGGTTT+TGG | + | chr5_4:32656433-32656452 | Msa0848270:intron | 35.0% |
| AAACCAAATGACTTTGCAGA+TGG | + | chr5_4:32656925-32656944 | Msa0848270:intron | 35.0% | |
| AATAACCATGTCATGCAGAA+TGG | + | chr5_4:32657072-32657091 | Msa0848270:intron | 35.0% | |
| ! | AAGATAGCTTGCATATCTGA+GGG | - | chr5_4:32657133-32657152 | None:intergenic | 35.0% |
| TGAACAAACAAAGCAGATAG+AGG | + | chr5_4:32657322-32657341 | Msa0848270:CDS | 35.0% | |
| GAAAGACTTCTATCAGAAAC+TGG | + | chr5_4:32657404-32657423 | Msa0848270:CDS | 35.0% | |
| !! | TACTACATTGTTTCTGAGGA+GGG | - | chr5_4:32657466-32657485 | None:intergenic | 35.0% |
| !! | TGAGTACTACATTGTTTCTG+AGG | - | chr5_4:32657470-32657489 | None:intergenic | 35.0% |
| AATCCTAACATCTCCATGGT+AGG | - | chr5_4:32653686-32653705 | None:intergenic | 40.0% | |
| CTTGAATCCTAACATCTCCA+TGG | - | chr5_4:32653690-32653709 | None:intergenic | 40.0% | |
| CTGGCTAACAAATGATCAAG+AGG | + | chr5_4:32653757-32653776 | Msa0848270:CDS | 40.0% | |
| TGCTTGATGAATTGTATCCC+TGG | - | chr5_4:32654079-32654098 | None:intergenic | 40.0% | |
| GGGATACAATTCATCAAGCA+TGG | + | chr5_4:32654079-32654098 | Msa0848270:intron | 40.0% | |
| TTAACAGTCGTTTGTCGAAG+AGG | + | chr5_4:32654105-32654124 | Msa0848270:CDS | 40.0% | |
| TAATCAGCAACACATTGGTG+TGG | + | chr5_4:32654380-32654399 | Msa0848270:CDS | 40.0% | |
| GACTACGTCATTTACCTGAT+TGG | - | chr5_4:32654486-32654505 | None:intergenic | 40.0% | |
| !! | TAGTAACTTGTTTCTGGCCA+AGG | + | chr5_4:32654610-32654629 | Msa0848270:CDS | 40.0% |
| TTTCATTATCAATGCAGGCC+TGG | + | chr5_4:32654695-32654714 | Msa0848270:intron | 40.0% | |
| TCGTTGATCGGTAATAAACC+AGG | - | chr5_4:32654716-32654735 | None:intergenic | 40.0% | |
| GCTTCTTGTCATTCGTTGAT+CGG | - | chr5_4:32654728-32654747 | None:intergenic | 40.0% | |
| ATCAACGAATGACAAGAAGC+CGG | + | chr5_4:32654728-32654747 | Msa0848270:CDS | 40.0% | |
| ! | AGTGCTTTTCCAGATGAACA+TGG | - | chr5_4:32654803-32654822 | None:intergenic | 40.0% |
| GAGAAATTCCAAACCACTTG+AGG | + | chr5_4:32654931-32654950 | Msa0848270:intron | 40.0% | |
| AAATCCAAACAGACCTCAAG+TGG | - | chr5_4:32654947-32654966 | None:intergenic | 40.0% | |
| CAAAATTCTCAAGCACCACA+AGG | + | chr5_4:32655233-32655252 | Msa0848270:CDS | 40.0% | |
| ! | TTGGTAACTCACACATGGAA+AGG | - | chr5_4:32655340-32655359 | None:intergenic | 40.0% |
| TGTGAGTTACCAAGCCAAAA+GGG | + | chr5_4:32655347-32655366 | Msa0848270:CDS | 40.0% | |
| !! | ATAAATGTGCCCTTTTGGCT+TGG | - | chr5_4:32655359-32655378 | None:intergenic | 40.0% |
| ! | GAGACATAAATGTGCCCTTT+TGG | - | chr5_4:32655364-32655383 | None:intergenic | 40.0% |
| ACTGATCAAGTTAACGATCC+CGG | + | chr5_4:32655629-32655648 | Msa0848270:CDS | 40.0% | |
| CAAAGTTTGTGGTTCCTTCA+AGG | - | chr5_4:32655667-32655686 | None:intergenic | 40.0% | |
| ! | ACCGTCTAAGACAAAGTTTG+TGG | - | chr5_4:32655678-32655697 | None:intergenic | 40.0% |
| CAAACGAACCAAATACAAGG+CGG | + | chr5_4:32655707-32655726 | Msa0848270:CDS | 40.0% | |
| ! | TTCACTTTGAGAAGGTTCAC+CGG | - | chr5_4:32655741-32655760 | None:intergenic | 40.0% |
| ! | GCAGAAGATTCACTTTGAGA+AGG | - | chr5_4:32655749-32655768 | None:intergenic | 40.0% |
| TCTAAGCCAGATGAGATTAC+TGG | - | chr5_4:32655779-32655798 | None:intergenic | 40.0% | |
| ! | AAACTCTTGGTGATAGCTCA+TGG | + | chr5_4:32655828-32655847 | Msa0848270:CDS | 40.0% |
| TGATAGCTCATGGAAACAAG+TGG | + | chr5_4:32655838-32655857 | Msa0848270:CDS | 40.0% | |
| GATAGCTCATGGAAACAAGT+GGG | + | chr5_4:32655839-32655858 | Msa0848270:CDS | 40.0% | |
| ! | TGTGCCTTTTGTGAAAATGC+AGG | + | chr5_4:32656175-32656194 | Msa0848270:intron | 40.0% |
| ! | GACACCTGCATTTTCACAAA+AGG | - | chr5_4:32656182-32656201 | None:intergenic | 40.0% |
| AGGTGTCAGAGAACAGATAA+TGG | + | chr5_4:32656195-32656214 | Msa0848270:intron | 40.0% | |
| ! | ATCTGGCTTAAATTGTGCAG+AGG | + | chr5_4:32656326-32656345 | Msa0848270:intron | 40.0% |
| ! | TCTGTAACATCAGCTGTTTC+AGG | + | chr5_4:32656370-32656389 | Msa0848270:CDS | 40.0% |
| TTGCCATCTGCAAAGTCATT+TGG | - | chr5_4:32656931-32656950 | None:intergenic | 40.0% | |
| TGGATAACACAAAAAAGCGG+AGG | + | chr5_4:32656953-32656972 | Msa0848270:CDS | 40.0% | |
| GGATAACACAAAAAAGCGGA+GGG | + | chr5_4:32656954-32656973 | Msa0848270:CDS | 40.0% | |
| TGCATATCTGAGGGAATTGT+TGG | - | chr5_4:32657124-32657143 | None:intergenic | 40.0% | |
| ! | CAAGATAGCTTGCATATCTG+AGG | - | chr5_4:32657134-32657153 | None:intergenic | 40.0% |
| GTGATCGAACTTCTTTCTCA+AGG | - | chr5_4:32657171-32657190 | None:intergenic | 40.0% | |
| AGTCTTCATTCTGCTTCTGA+AGG | - | chr5_4:32657349-32657368 | None:intergenic | 40.0% | |
| TCAGAAGCAGAATGAAGACT+TGG | + | chr5_4:32657349-32657368 | Msa0848270:CDS | 40.0% | |
| TGAAGACTTGGCAGATGAAA+AGG | + | chr5_4:32657361-32657380 | Msa0848270:CDS | 40.0% | |
| GAAGTCTTTCAATCTCTTCG+AGG | - | chr5_4:32657394-32657413 | None:intergenic | 40.0% | |
| !! | GTACTACATTGTTTCTGAGG+AGG | - | chr5_4:32657467-32657486 | None:intergenic | 40.0% |
| ! | ATGGAAGGGAGAGGATTTTC+TGG | + | chr5_4:32653590-32653609 | Msa0848270:CDS | 45.0% |
| ! | ACAGTGATGGAGAGTCCTAT+TGG | + | chr5_4:32653650-32653669 | Msa0848270:CDS | 45.0% |
| GGAGAGTCCTATTGGTATGT+CGG | + | chr5_4:32653658-32653677 | Msa0848270:CDS | 45.0% | |
| ! | GTGAAGAGCTTTTCAAACGC+TGG | + | chr5_4:32653738-32653757 | Msa0848270:CDS | 45.0% |
| CATACCGCAATTCAGAAGAC+CGG | - | chr5_4:32654750-32654769 | None:intergenic | 45.0% | |
| CAAACAGACCTCAAGTGGTT+TGG | - | chr5_4:32654942-32654961 | None:intergenic | 45.0% | |
| CAAACCACTTGAGGTCTGTT+TGG | + | chr5_4:32654940-32654959 | Msa0848270:intron | 45.0% | |
| AATCTGTTAGGCTTCTGTGC+AGG | + | chr5_4:32655192-32655211 | Msa0848270:intron | 45.0% | |
| TTCTCAAGCACCACAAGGAT+TGG | + | chr5_4:32655238-32655257 | Msa0848270:CDS | 45.0% | |
| !! | TTGGCTTGGTAACTCACACA+TGG | - | chr5_4:32655345-32655364 | None:intergenic | 45.0% |
| GTGTGAGTTACCAAGCCAAA+AGG | + | chr5_4:32655346-32655365 | Msa0848270:CDS | 45.0% | |
| ! | GTAGACGAAGATGAGTTGGA+TGG | - | chr5_4:32655386-32655405 | None:intergenic | 45.0% |
| GAAGGTAGACGAAGATGAGT+TGG | - | chr5_4:32655390-32655409 | None:intergenic | 45.0% | |
| GAGAAAGAAGCTGCAGAAGA+TGG | + | chr5_4:32655503-32655522 | Msa0848270:CDS | 45.0% | |
| TTCAAGGGTTTGCATGACTC+CGG | - | chr5_4:32655651-32655670 | None:intergenic | 45.0% | |
| AAGCTGTTCCGCCTTGTATT+TGG | - | chr5_4:32655718-32655737 | None:intergenic | 45.0% | |
| ! | TCTGGCTTAGATGCATGTGA+AGG | + | chr5_4:32655788-32655807 | Msa0848270:CDS | 45.0% |
| !! | GTGCTCTGAAGCAAACATTG+AGG | + | chr5_4:32656427-32656446 | Msa0848270:intron | 45.0% |
| TGACTTTGCAGATGGCAAGA+TGG | + | chr5_4:32656933-32656952 | Msa0848270:intron | 45.0% | |
| TAACACAAAAAAGCGGAGGG+TGG | + | chr5_4:32656957-32656976 | Msa0848270:CDS | 45.0% | |
| TTCAGCCATTCTGCATGACA+TGG | - | chr5_4:32657080-32657099 | None:intergenic | 45.0% | |
| ATGCAGAATGGCTGAAGCAA+AGG | + | chr5_4:32657084-32657103 | Msa0848270:intron | 45.0% | |
| GTCTTTCAATCTCTTCGAGG+AGG | - | chr5_4:32657391-32657410 | None:intergenic | 45.0% | |
| !! | CATTGTTTCTGAGGAGGGTA+AGG | - | chr5_4:32657461-32657480 | None:intergenic | 45.0% |
| !! | GTAGGTGCCGACATACCAAT+AGG | - | chr5_4:32653668-32653687 | None:intergenic | 50.0% |
| GCACCTACCATGGAGATGTT+AGG | + | chr5_4:32653680-32653699 | Msa0848270:CDS | 50.0% | |
| CACATTGGTGTGGCTTCAGA+AGG | + | chr5_4:32654390-32654409 | Msa0848270:CDS | 50.0% | |
| GAAGCCGGTCTTCTGAATTG+CGG | + | chr5_4:32654743-32654762 | Msa0848270:CDS | 50.0% | |
| CTGCAGCTTCTTTCTCGACT+TGG | - | chr5_4:32655499-32655518 | None:intergenic | 50.0% | |
| TCAAGGGTTTGCATGACTCC+GGG | - | chr5_4:32655650-32655669 | None:intergenic | 50.0% | |
| GGAGTCATGCAAACCCTTGA+AGG | + | chr5_4:32655650-32655669 | Msa0848270:CDS | 50.0% | |
| ATACAAGGCGGAACAGCTTC+CGG | + | chr5_4:32655719-32655738 | Msa0848270:CDS | 50.0% | |
| GCTGCACCAGTAATCTCATC+TGG | + | chr5_4:32655770-32655789 | Msa0848270:CDS | 50.0% | |
| TGGTATGTCGGCACCTACCA+TGG | + | chr5_4:32653670-32653689 | Msa0848270:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 32653590 | 32657506 | 32653590 | ID=Msa0848270;Name=Msa0848270 |
| chr5_4 | mRNA | 32653590 | 32657506 | 32653590 | ID=Msa0848270-mRNA-1;Parent=Msa0848270;Name=Msa0848270-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.8|0.63|1|1|1|11|70|513 |
| chr5_4 | exon | 32653590 | 32653778 | 32653590 | ID=Msa0848270-mRNA-1:exon:11383;Parent=Msa0848270-mRNA-1 |
| chr5_4 | exon | 32654080 | 32654126 | 32654080 | ID=Msa0848270-mRNA-1:exon:11384;Parent=Msa0848270-mRNA-1 |
| chr5_4 | exon | 32654353 | 32654490 | 32654353 | ID=Msa0848270-mRNA-1:exon:11385;Parent=Msa0848270-mRNA-1 |
| chr5_4 | exon | 32654583 | 32654631 | 32654583 | ID=Msa0848270-mRNA-1:exon:11386;Parent=Msa0848270-mRNA-1 |
| chr5_4 | exon | 32654712 | 32654764 | 32654712 | ID=Msa0848270-mRNA-1:exon:11387;Parent=Msa0848270-mRNA-1 |
| chr5_4 | exon | 32655214 | 32655887 | 32655214 | ID=Msa0848270-mRNA-1:exon:11388;Parent=Msa0848270-mRNA-1 |
| chr5_4 | exon | 32656197 | 32656240 | 32656197 | ID=Msa0848270-mRNA-1:exon:11389;Parent=Msa0848270-mRNA-1 |
| chr5_4 | exon | 32656346 | 32656391 | 32656346 | ID=Msa0848270-mRNA-1:exon:11390;Parent=Msa0848270-mRNA-1 |
| chr5_4 | exon | 32656944 | 32656992 | 32656944 | ID=Msa0848270-mRNA-1:exon:11391;Parent=Msa0848270-mRNA-1 |
| chr5_4 | exon | 32657090 | 32657218 | 32657090 | ID=Msa0848270-mRNA-1:exon:11392;Parent=Msa0848270-mRNA-1 |
| chr5_4 | exon | 32657313 | 32657506 | 32657313 | ID=Msa0848270-mRNA-1:exon:11393;Parent=Msa0848270-mRNA-1 |
| chr5_4 | CDS | 32653590 | 32653778 | 32653590 | ID=Msa0848270-mRNA-1:cds;Parent=Msa0848270-mRNA-1 |
| chr5_4 | CDS | 32654080 | 32654126 | 32654080 | ID=Msa0848270-mRNA-1:cds;Parent=Msa0848270-mRNA-1 |
| chr5_4 | CDS | 32654353 | 32654490 | 32654353 | ID=Msa0848270-mRNA-1:cds;Parent=Msa0848270-mRNA-1 |
| chr5_4 | CDS | 32654583 | 32654631 | 32654583 | ID=Msa0848270-mRNA-1:cds;Parent=Msa0848270-mRNA-1 |
| chr5_4 | CDS | 32654712 | 32654764 | 32654712 | ID=Msa0848270-mRNA-1:cds;Parent=Msa0848270-mRNA-1 |
| chr5_4 | CDS | 32655214 | 32655887 | 32655214 | ID=Msa0848270-mRNA-1:cds;Parent=Msa0848270-mRNA-1 |
| chr5_4 | CDS | 32656197 | 32656240 | 32656197 | ID=Msa0848270-mRNA-1:cds;Parent=Msa0848270-mRNA-1 |
| chr5_4 | CDS | 32656346 | 32656391 | 32656346 | ID=Msa0848270-mRNA-1:cds;Parent=Msa0848270-mRNA-1 |
| chr5_4 | CDS | 32656944 | 32656992 | 32656944 | ID=Msa0848270-mRNA-1:cds;Parent=Msa0848270-mRNA-1 |
| chr5_4 | CDS | 32657090 | 32657218 | 32657090 | ID=Msa0848270-mRNA-1:cds;Parent=Msa0848270-mRNA-1 |
| chr5_4 | CDS | 32657313 | 32657436 | 32657313 | ID=Msa0848270-mRNA-1:cds;Parent=Msa0848270-mRNA-1 |
| chr5_4 | three_prime_UTR | 32657437 | 32657506 | 32657437 | ID=Msa0848270-mRNA-1:three_prime_utr;Parent=Msa0848270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
