AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1162870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1162870 MtrunA17_Chr7g0259161 99.714 350 1 0 1 350 1 350 0.0 726
Msa1162870 MtrunA17_Chr1g0196311 84.286 350 49 4 1 350 17 360 0.0 613
Msa1162870 MtrunA17_Chr1g0191301 70.370 351 96 6 1 350 1 344 0.0 510
Msa1162870 MtrunA17_Chr6g0477161 40.764 314 178 4 35 347 378 684 5.31e-76 247
Msa1162870 MtrunA17_Chr6g0477161 40.663 332 188 5 17 347 12 335 7.92e-76 246
Msa1162870 MtrunA17_Chr6g0477251 38.484 343 202 4 6 347 554 888 8.68e-75 247
Msa1162870 MtrunA17_Chr6g0477251 37.168 339 204 4 10 347 4 334 2.18e-69 233
Msa1162870 MtrunA17_Chr6g0477231 35.294 340 215 4 9 347 1 336 7.90e-73 229
Msa1162870 MtrunA17_Chr6g0477271 36.283 339 198 5 11 346 28 351 3.30e-64 207
Msa1162870 MtrunA17_Chr6g0477241 37.557 221 129 3 36 254 41 254 1.83e-49 167
Msa1162870 MtrunA17_Chr4g0025291 34.797 296 160 8 61 346 43 315 1.12e-42 150
Msa1162870 MtrunA17_Chr7g0214851 33.013 312 169 11 61 347 54 350 5.91e-39 141
Msa1162870 MtrunA17_Chr7g0268091 35.345 232 136 6 106 327 69 296 8.64e-38 137
Msa1162870 MtrunA17_Chr1g0210121 31.987 297 161 8 69 346 68 342 3.59e-37 137
Msa1162870 MtrunA17_Chr1g0149271 31.579 304 179 9 63 346 13 307 1.47e-36 134
Msa1162870 MtrunA17_Chr1g0204211 37.143 210 111 5 78 283 83 275 3.03e-36 134
Msa1162870 MtrunA17_Chr8g0351211 32.308 260 157 5 99 346 64 316 5.77e-35 130
Msa1162870 MtrunA17_Chr7g0235741 34.749 259 143 8 106 350 107 353 6.79e-35 130
Msa1162870 MtrunA17_Chr6g0474411 32.231 242 144 5 32 268 22 248 1.15e-34 129
Msa1162870 MtrunA17_Chr6g0474631 34.496 258 155 8 100 347 72 325 2.75e-34 128
Msa1162870 MtrunA17_Chr3g0081521 33.750 240 147 5 97 328 79 314 3.71e-34 128
Msa1162870 MtrunA17_Chr6g0474541 32.787 244 138 7 32 268 47 271 6.60e-34 128
Msa1162870 MtrunA17_Chr4g0045181 31.699 306 178 10 53 347 33 318 8.97e-34 127
Msa1162870 MtrunA17_Chr6g0474471 32.584 267 163 5 69 329 54 309 1.09e-33 127
Msa1162870 MtrunA17_Chr4g0045131 27.666 347 209 12 27 346 23 354 3.78e-33 126
Msa1162870 MtrunA17_Chr6g0474491 34.274 248 136 6 78 314 62 293 6.51e-33 124
Msa1162870 MtrunA17_Chr6g0458881 30.662 287 147 5 80 329 146 417 1.06e-32 126
Msa1162870 MtrunA17_Chr3g0095711 31.419 296 169 12 72 346 86 368 9.79e-32 122
Msa1162870 MtrunA17_Chr1g0204201 38.012 171 97 3 106 268 78 247 1.30e-30 118
Msa1162870 MtrunA17_Chr4g0045121 31.225 253 151 7 106 346 76 317 2.65e-30 117
Msa1162870 MtrunA17_Chr8g0351201 29.457 258 165 5 101 347 74 325 6.47e-30 117
Msa1162870 MtrunA17_Chr8g0351171 29.139 302 181 9 25 315 8 287 7.31e-30 116
Msa1162870 MtrunA17_Chr3g0133701 30.769 312 171 12 53 347 32 315 1.92e-29 115
Msa1162870 MtrunA17_Chr7g0228721 30.657 274 132 6 106 329 165 430 5.96e-29 116
Msa1162870 MtrunA17_Chr8g0353951 28.228 333 197 14 32 347 22 329 2.87e-27 109
Msa1162870 MtrunA17_Chr5g0394251 29.042 334 190 15 25 340 9 313 2.96e-26 107
Msa1162870 MtrunA17_Chr4g0045191 29.949 197 116 5 38 231 31 208 4.24e-26 106
Msa1162870 MtrunA17_Chr1g0205871 29.000 300 171 11 38 320 21 295 9.84e-25 102
Msa1162870 MtrunA17_Chr7g0233871 30.976 297 164 12 69 347 53 326 3.54e-24 101
Msa1162870 MtrunA17_Chr5g0394241 27.124 306 171 13 23 308 12 285 1.72e-23 99.4
Msa1162870 MtrunA17_Chr5g0394211 27.703 296 171 11 38 316 56 325 6.10e-22 95.5
Msa1162870 MtrunA17_Chr1g0205791 31.641 256 134 10 69 311 51 278 8.42e-21 92.0
Msa1162870 MtrunA17_Chr1g0205781 31.154 260 134 11 69 311 53 284 1.95e-20 90.5
Msa1162870 MtrunA17_Chr6g0474611 32.941 170 103 6 186 347 5 171 2.40e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1162870 AT3G63010.1 72.622 347 90 3 1 347 1 342 0.0 543
Msa1162870 AT5G27320.1 68.946 351 100 6 1 350 1 343 1.10e-177 496
Msa1162870 AT3G05120.1 66.382 351 111 5 1 350 1 345 7.63e-173 484
Msa1162870 AT5G23530.1 34.911 338 193 7 15 347 12 327 2.92e-62 202
Msa1162870 AT5G16080.1 32.026 306 173 7 59 349 59 344 7.88e-44 154
Msa1162870 AT1G68620.1 35.656 244 131 6 69 306 65 288 1.90e-42 150
Msa1162870 AT5G62180.1 30.597 268 170 5 32 294 15 271 9.89e-40 143
Msa1162870 AT2G45600.1 33.188 229 139 3 106 322 66 292 5.54e-35 130
Msa1162870 AT5G14310.1 32.331 266 135 5 106 329 151 413 4.27e-33 128
Msa1162870 AT2G03550.1 31.481 324 176 12 39 347 19 311 7.65e-33 124
Msa1162870 AT1G19190.1 35.439 285 141 14 53 321 30 287 1.51e-32 124
Msa1162870 AT1G47480.1 29.283 321 195 11 33 347 16 310 2.00e-32 123
Msa1162870 AT5G06570.1 35.338 266 155 9 96 347 64 326 4.75e-32 123
Msa1162870 AT5G06570.2 35.338 266 155 9 96 347 64 326 4.75e-32 123
Msa1162870 AT5G06570.3 35.338 266 155 9 96 347 79 341 7.05e-32 122
Msa1162870 AT5G06570.4 35.338 266 155 9 96 347 79 341 7.05e-32 122
Msa1162870 AT2G45610.1 28.720 289 179 6 69 347 53 324 3.71e-30 117
Msa1162870 AT3G27320.2 28.736 348 171 9 56 329 51 395 7.29e-29 116
Msa1162870 AT3G27320.1 30.717 293 145 6 78 329 152 427 2.85e-28 114
Msa1162870 AT3G48690.1 32.463 268 147 11 50 302 27 275 1.50e-27 110
Msa1162870 AT3G48700.1 31.034 319 178 14 50 346 27 325 2.63e-27 110
Msa1162870 AT1G49650.1 32.090 268 154 8 53 311 86 334 1.61e-26 108
Msa1162870 AT1G49640.1 29.183 257 154 9 56 308 40 272 1.55e-24 102
Msa1162870 AT1G49660.1 30.303 264 159 6 53 308 30 276 1.18e-23 99.8

Find 99 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTTGATGGTTTGGAATTT+GGG 0.103998 7_4:-53731979 Msa1162870:three_prime_UTR
TTGGTTGATGGTTTGGAATT+TGG 0.150301 7_4:-53731980 Msa1162870:three_prime_UTR
ACAATTTCTGTTGTACTTAA+TGG 0.166515 7_4:+53732939 None:intergenic
TGGCTTATGTGGATGGTTTA+AGG 0.186814 7_4:-53732332 Msa1162870:CDS
GTGGATGGTTTAAGGAATTT+TGG 0.215905 7_4:-53732324 Msa1162870:CDS
TGATCATTTCTATTGCCTTA+TGG 0.245202 7_4:-53732238 Msa1162870:CDS
ATTCTTCTTCATCCTTTGTT+TGG 0.284217 7_4:-53732582 Msa1162870:CDS
GGAGATTGAAGATTAGGTAT+TGG 0.296630 7_4:-53731999 Msa1162870:three_prime_UTR
TAGAGAGGAGATTGAAGATT+AGG 0.310621 7_4:-53732005 Msa1162870:three_prime_UTR
GCAGAAGGAATTGAAGTGTT+AGG 0.327890 7_4:-53732609 Msa1162870:CDS
AAAAGTCTTGTTTGTGTGGC+TGG 0.337676 7_4:-53732381 Msa1162870:CDS
GAAGATTAGGTATTGGTTGA+TGG 0.338553 7_4:-53731992 Msa1162870:three_prime_UTR
CAATAGAAATGATCATTATT+AGG 0.341519 7_4:+53732246 None:intergenic
TGGTCTCTATCTTCACCTTC+TGG 0.343587 7_4:+53732468 None:intergenic
AATGGGTGAAGTCAAGAAAA+TGG 0.346501 7_4:-53732734 Msa1162870:CDS
TTAGGTATTGGTTGATGGTT+TGG 0.346685 7_4:-53731987 Msa1162870:three_prime_UTR
GATTCTGAAATGAGATTAGA+TGG 0.348082 7_4:-53732543 Msa1162870:CDS
TCTTGTTTGTGTGGCTGGTT+TGG 0.349537 7_4:-53732376 Msa1162870:CDS
TACAAGATCGTGATTGGTAT+TGG 0.350184 7_4:-53732503 Msa1162870:CDS
TACCTTAAGGAGGCTACTAT+TGG 0.351911 7_4:-53732282 Msa1162870:CDS
TGTTAAACTTCTTTACCTTA+AGG 0.362269 7_4:-53732295 Msa1162870:CDS
CTTCTTCATCCTTTGTTTGG+TGG 0.365813 7_4:-53732579 Msa1162870:CDS
GAGAAAGAACAGAATAATAA+TGG 0.371342 7_4:+53733644 None:intergenic
AAGTAATAGTATTAACAGTT+AGG 0.372219 7_4:+53732192 None:intergenic
TTTAAGTACACACCATTACT+TGG 0.398396 7_4:+53732074 None:intergenic
TTCAGAAAATGAATCTCAAT+GGG 0.401908 7_4:-53732982 Msa1162870:CDS
AGTTCTTGATTTCCTCCATA+AGG 0.402550 7_4:+53732223 None:intergenic
TTAGATTACAAGATCGTGAT+TGG 0.411360 7_4:-53732509 Msa1162870:CDS
AAAGTTTATGTTTACATGGC+AGG 0.415400 7_4:-53732690 Msa1162870:CDS
AGTTACTATTATAACATCTA+TGG 0.415455 7_4:-53732038 Msa1162870:three_prime_UTR
AGTCCCGGCAAATGCTATTC+CGG 0.421368 7_4:-53733078 Msa1162870:CDS
AACCAATAGTAGCCTCCTTA+AGG 0.425272 7_4:+53732280 None:intergenic
TTGTAAAGCTGCTGTTGTTT+CGG 0.428335 7_4:-53732823 Msa1162870:CDS
CACCCTGCTTGTAACCCGTT+TGG 0.430827 7_4:-53732447 Msa1162870:CDS
TGTAACCCGTTTGGTCCAAA+AGG 0.441552 7_4:-53732438 Msa1162870:CDS
TACATGGCAGGTGATAGTTC+TGG 0.444051 7_4:-53732678 Msa1162870:CDS
GAAGTGATGTGGGTTAGAAA+AGG 0.453473 7_4:+53733783 None:intergenic
CAGAAGGAATTGAAGTGTTA+GGG 0.454064 7_4:-53732608 Msa1162870:CDS
CTTCAGAAAATGAATCTCAA+TGG 0.456710 7_4:-53732983 Msa1162870:CDS
TCATTAGTACCAGTCATGTC+TGG 0.474445 7_4:+53733604 None:intergenic
AGATTGGCAATTGGCTTATG+TGG 0.475777 7_4:-53732343 Msa1162870:CDS
AAGTGATGTGGGTTAGAAAA+GGG 0.491006 7_4:+53733784 None:intergenic
GGTTAATTACCGACGATCAC+CGG 0.491592 7_4:-53732802 Msa1162870:CDS
GGACCAAACGGGTTACAAGC+AGG 0.492003 7_4:+53732444 None:intergenic
ATAAGAACATATGTATTCAA+TGG 0.496984 7_4:+53733185 None:intergenic
AAGTCAACCTCAGTGAATCC+AGG 0.499269 7_4:-53733582 Msa1162870:CDS
GTAACCCGTTTGGTCCAAAA+GGG 0.503887 7_4:-53732437 Msa1162870:CDS
CATGTGCTTATGAAGATGGC+TGG 0.506515 7_4:-53732767 Msa1162870:CDS
CCTGTCATAGTATTCTTCCA+TGG 0.508891 7_4:-53732915 Msa1162870:CDS
GGTTGATGGTTTGGAATTTG+GGG 0.512139 7_4:-53731978 Msa1162870:three_prime_UTR
TCCTAAAAGTCTTGTTTGTG+TGG 0.514991 7_4:-53732385 Msa1162870:CDS
ATGGCTGGAATGCACTCAAA+TGG 0.521371 7_4:-53732752 Msa1162870:CDS
AAAGAAAGTTTATGTTTACA+TGG 0.521453 7_4:-53732694 Msa1162870:CDS
AAGGGATTGAGTAAAGAAGA+AGG 0.523828 7_4:+53733893 None:intergenic
TTTCCATGTGCTTATGAAGA+TGG 0.528955 7_4:-53732771 Msa1162870:CDS
TGGCAATTGGCTTATGTGGA+TGG 0.532054 7_4:-53732339 Msa1162870:CDS
GGTGTATTAATTGAAGAGAA+GGG 0.534817 7_4:+53733875 None:intergenic
TGGTGTATTAATTGAAGAGA+AGG 0.535556 7_4:+53733874 None:intergenic
ACGTATAAGTTTAATCTCAA+AGG 0.545836 7_4:+53733847 None:intergenic
CAAGAAACTCTGCTAAATCT+CGG 0.546001 7_4:+53733108 None:intergenic
ATAAGTTTAATCTCAAAGGT+TGG 0.547903 7_4:+53733851 None:intergenic
CATGGAGAAGAGAACAAAAG+AGG 0.550114 7_4:+53733732 None:intergenic
GTTTCTTGACAGAAAAGTCC+CGG 0.552120 7_4:-53733093 Msa1162870:CDS
TCGACCGGAATAGCATTTGC+CGG 0.555684 7_4:+53733074 None:intergenic
CGACCGGAATAGCATTTGCC+GGG 0.556973 7_4:+53733075 None:intergenic
GACCAAACGGGTTACAAGCA+GGG 0.558028 7_4:+53732445 None:intergenic
CAAGAAAATGGCTTCAAAGT+GGG 0.561680 7_4:-53732722 Msa1162870:CDS
GCAAATGCTATTCCGGTCGA+TGG 0.562535 7_4:-53733071 Msa1162870:CDS
CCATGGAAGAATACTATGAC+AGG 0.563416 7_4:+53732915 None:intergenic
TGAAAGAGTTGAAGTGATGT+GGG 0.563904 7_4:+53733773 None:intergenic
TGGCTGGAATGCACTCAAAT+GGG 0.565881 7_4:-53732751 Msa1162870:CDS
GATAAAAGTGTACGTAGCGT+AGG 0.567364 7_4:+53733815 None:intergenic
GTGAAAGAGTTGAAGTGATG+TGG 0.567567 7_4:+53733772 None:intergenic
ACCGATACTCCGGTGATCGT+CGG 0.572460 7_4:+53732793 None:intergenic
TAAACTTCTTTACCTTAAGG+AGG 0.574148 7_4:-53732292 Msa1162870:CDS
AGAAGAAAGAGTGATCCTCA+TGG 0.576750 7_4:+53733714 None:intergenic
AATCTTCTAAGAAGAGCAGA+TGG 0.579373 7_4:-53733140 Msa1162870:CDS
TCAGTAATTAGTACTACAAG+AGG 0.584693 7_4:+53731945 None:intergenic
TACAACTAACCAGACATGAC+TGG 0.594054 7_4:-53733613 Msa1162870:exon
TCATTTCTATTGCCTTATGG+AGG 0.599565 7_4:-53732235 Msa1162870:CDS
AAAAGTGTACGTAGCGTAGG+TGG 0.602061 7_4:+53733818 None:intergenic
CAGCCATCTTCATAAGCACA+TGG 0.605205 7_4:+53732768 None:intergenic
AATGAAAAGACTCCATCGAC+CGG 0.605436 7_4:+53733059 None:intergenic
TCAAGAAAATGGCTTCAAAG+TGG 0.615492 7_4:-53732723 Msa1162870:CDS
AGTTTAATCTCAAAGGTTGG+TGG 0.616241 7_4:+53733854 None:intergenic
TACTATTATAACATCTATGG+TGG 0.625048 7_4:-53732035 Msa1162870:three_prime_UTR
GCACATGGAAACCGATACTC+CGG 0.625683 7_4:+53732783 None:intergenic
ATGGCAGGTGATAGTTCTGG+TGG 0.630946 7_4:-53732675 Msa1162870:CDS
GATCATATCGAACGAAACAC+CGG 0.631025 7_4:-53733035 Msa1162870:CDS
AGTCAACCTCAGTGAATCCA+GGG 0.636231 7_4:-53733581 Msa1162870:intron
TGTAGCAGTAAAAGCTTGCG+AGG 0.639380 7_4:-53732637 Msa1162870:CDS
ATAAACACGATTGAATAGAC+CGG 0.640482 7_4:+53733016 None:intergenic
TAACCCGTTTGGTCCAAAAG+GGG 0.642733 7_4:-53732436 Msa1162870:CDS
AATGAGAGAAGCTTCCACCA+TGG 0.652602 7_4:+53732898 None:intergenic
GTCATAGTATTCTTCCATGG+TGG 0.656265 7_4:-53732912 Msa1162870:CDS
ACTAATTACTGAATGTGACA+TGG 0.657158 7_4:-53731934 Msa1162870:three_prime_UTR
TCAGAAAATGAATCTCAATG+GGG 0.736042 7_4:-53732981 Msa1162870:CDS
ATATTACCCTGGATTCACTG+AGG 0.739496 7_4:+53733575 None:intergenic
CAAACGGGTTACAAGCAGGG+TGG 0.789743 7_4:+53732448 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATAAATAAAAAGAGAAA+GGG + chr7_4:53732147-53732166 None:intergenic 15.0%
!! AGAAATAAATAAAAAGAGAA+AGG + chr7_4:53732148-53732167 None:intergenic 15.0%
!!! AAAAACAAAATTTTCTAAGA+TGG + chr7_4:53732291-53732310 None:intergenic 15.0%
!! GAAATAAATAAAAAGAGAAA+GGG + chr7_4:53732147-53732166 None:intergenic 15.0%
!! AGAAATAAATAAAAAGAGAA+AGG + chr7_4:53732148-53732167 None:intergenic 15.0%
!!! AAAAACAAAATTTTCTAAGA+TGG + chr7_4:53732291-53732310 None:intergenic 15.0%
!! TAAACTTTAACATATGTGAT+TGG - chr7_4:53732367-53732386 Msa1162870:CDS 20.0%
!!! ATCATGTAATATTTTTCTGT+GGG - chr7_4:53732402-53732421 Msa1162870:CDS 20.0%
!! AGAAAAATGAAACAAATCTT+GGG + chr7_4:53732562-53732581 None:intergenic 20.0%
!! AAGAAAAATGAAACAAATCT+TGG + chr7_4:53732563-53732582 None:intergenic 20.0%
!! ATAAGAACATATGTATTCAA+TGG + chr7_4:53732650-53732669 None:intergenic 20.0%
!! AAAGAAAGTTTATGTTTACA+TGG - chr7_4:53733138-53733157 Msa1162870:CDS 20.0%
!!! TTAATATTTTTTTCCCCTTT+TGG + chr7_4:53733412-53733431 None:intergenic 20.0%
!! AAAGGGGAAAAAAATATTAA+AGG - chr7_4:53733412-53733431 Msa1162870:intron 20.0%
!! CAATAGAAATGATCATTATT+AGG + chr7_4:53733589-53733608 None:intergenic 20.0%
!! AAGTAATAGTATTAACAGTT+AGG + chr7_4:53733643-53733662 None:intergenic 20.0%
!!! AAAAGCTTGAATTTTTCATT+TGG - chr7_4:53733683-53733702 Msa1162870:five_prime_UTR 20.0%
!!! AAAGCTTGAATTTTTCATTT+GGG - chr7_4:53733684-53733703 Msa1162870:five_prime_UTR 20.0%
!! AGTTACTATTATAACATCTA+TGG - chr7_4:53733794-53733813 Msa1162870:five_prime_UTR 20.0%
!! TAAACTTTAACATATGTGAT+TGG - chr7_4:53732367-53732386 Msa1162870:CDS 20.0%
!!! ATCATGTAATATTTTTCTGT+GGG - chr7_4:53732402-53732421 Msa1162870:CDS 20.0%
!! AGAAAAATGAAACAAATCTT+GGG + chr7_4:53732562-53732581 None:intergenic 20.0%
!! AAGAAAAATGAAACAAATCT+TGG + chr7_4:53732563-53732582 None:intergenic 20.0%
!! ATAAGAACATATGTATTCAA+TGG + chr7_4:53732650-53732669 None:intergenic 20.0%
!! AAAGAAAGTTTATGTTTACA+TGG - chr7_4:53733138-53733157 Msa1162870:CDS 20.0%
!!! TTAATATTTTTTTCCCCTTT+TGG + chr7_4:53733412-53733431 None:intergenic 20.0%
!! AAAGGGGAAAAAAATATTAA+AGG - chr7_4:53733412-53733431 Msa1162870:intron 20.0%
!! CAATAGAAATGATCATTATT+AGG + chr7_4:53733589-53733608 None:intergenic 20.0%
!! AAGTAATAGTATTAACAGTT+AGG + chr7_4:53733643-53733662 None:intergenic 20.0%
!!! AAAAGCTTGAATTTTTCATT+TGG - chr7_4:53733683-53733702 Msa1162870:five_prime_UTR 20.0%
!!! AAAGCTTGAATTTTTCATTT+GGG - chr7_4:53733684-53733703 Msa1162870:five_prime_UTR 20.0%
!! AGTTACTATTATAACATCTA+TGG - chr7_4:53733794-53733813 Msa1162870:five_prime_UTR 20.0%
! ATAAGTTTAATCTCAAAGGT+TGG + chr7_4:53731984-53732003 None:intergenic 25.0%
! ACGTATAAGTTTAATCTCAA+AGG + chr7_4:53731988-53732007 None:intergenic 25.0%
! GAGAAAGAACAGAATAATAA+TGG + chr7_4:53732191-53732210 None:intergenic 25.0%
!!! TTTGCTTTGTTTTTGATGTT+GGG - chr7_4:53732330-53732349 Msa1162870:CDS 25.0%
!! GATCATGTAATATTTTTCTG+TGG - chr7_4:53732401-53732420 Msa1162870:CDS 25.0%
!! AGTTTCTTCTTTTTATGTGT+TGG - chr7_4:53732462-53732481 Msa1162870:CDS 25.0%
!! GTTTCTTCTTTTTATGTGTT+GGG - chr7_4:53732463-53732482 Msa1162870:CDS 25.0%
! TCATTATGTGTCACAATAAT+TGG - chr7_4:53732520-53732539 Msa1162870:CDS 25.0%
! GCAAAACAATAACTTTAGAT+TGG + chr7_4:53732616-53732635 None:intergenic 25.0%
! TTCAGAAAATGAATCTCAAT+GGG - chr7_4:53732850-53732869 Msa1162870:CDS 25.0%
! ACAATTTCTGTTGTACTTAA+TGG + chr7_4:53732896-53732915 None:intergenic 25.0%
!! TCTATGATACATTTTGTAGA+AGG - chr7_4:53732975-53732994 Msa1162870:CDS 25.0%
! TGTTAAACTTCTTTACCTTA+AGG - chr7_4:53733537-53733556 Msa1162870:intron 25.0%
!! TTCAAGCTTTTGTTAAGTAA+GGG + chr7_4:53733674-53733693 None:intergenic 25.0%
!! ATTCAAGCTTTTGTTAAGTA+AGG + chr7_4:53733675-53733694 None:intergenic 25.0%
!! TTATTTTCTTCTCCAAGTAA+TGG - chr7_4:53733746-53733765 Msa1162870:five_prime_UTR 25.0%
! TACTATTATAACATCTATGG+TGG - chr7_4:53733797-53733816 Msa1162870:five_prime_UTR 25.0%
! ATAAGTTTAATCTCAAAGGT+TGG + chr7_4:53731984-53732003 None:intergenic 25.0%
! ACGTATAAGTTTAATCTCAA+AGG + chr7_4:53731988-53732007 None:intergenic 25.0%
! GAGAAAGAACAGAATAATAA+TGG + chr7_4:53732191-53732210 None:intergenic 25.0%
!!! TTTGCTTTGTTTTTGATGTT+GGG - chr7_4:53732330-53732349 Msa1162870:CDS 25.0%
!! GATCATGTAATATTTTTCTG+TGG - chr7_4:53732401-53732420 Msa1162870:CDS 25.0%
!! AGTTTCTTCTTTTTATGTGT+TGG - chr7_4:53732462-53732481 Msa1162870:CDS 25.0%
!! GTTTCTTCTTTTTATGTGTT+GGG - chr7_4:53732463-53732482 Msa1162870:CDS 25.0%
! TCATTATGTGTCACAATAAT+TGG - chr7_4:53732520-53732539 Msa1162870:CDS 25.0%
! GCAAAACAATAACTTTAGAT+TGG + chr7_4:53732616-53732635 None:intergenic 25.0%
! TTCAGAAAATGAATCTCAAT+GGG - chr7_4:53732850-53732869 Msa1162870:CDS 25.0%
! ACAATTTCTGTTGTACTTAA+TGG + chr7_4:53732896-53732915 None:intergenic 25.0%
!! TCTATGATACATTTTGTAGA+AGG - chr7_4:53732975-53732994 Msa1162870:CDS 25.0%
! TGTTAAACTTCTTTACCTTA+AGG - chr7_4:53733537-53733556 Msa1162870:intron 25.0%
!! TTCAAGCTTTTGTTAAGTAA+GGG + chr7_4:53733674-53733693 None:intergenic 25.0%
!! ATTCAAGCTTTTGTTAAGTA+AGG + chr7_4:53733675-53733694 None:intergenic 25.0%
!! TTATTTTCTTCTCCAAGTAA+TGG - chr7_4:53733746-53733765 Msa1162870:five_prime_UTR 25.0%
! TACTATTATAACATCTATGG+TGG - chr7_4:53733797-53733816 Msa1162870:five_prime_UTR 25.0%
GGTGTATTAATTGAAGAGAA+GGG + chr7_4:53731960-53731979 None:intergenic 30.0%
TGGTGTATTAATTGAAGAGA+AGG + chr7_4:53731961-53731980 None:intergenic 30.0%
AGAGGAATAGAAAAAAACGT+TGG + chr7_4:53732085-53732104 None:intergenic 30.0%
!!! GTTTGCTTTGTTTTTGATGT+TGG - chr7_4:53732329-53732348 Msa1162870:CDS 30.0%
!!! ATATTTTTCTGTGGGTTAGT+TGG - chr7_4:53732410-53732429 Msa1162870:CDS 30.0%
! GGTTTCTTGTTATGGTAAAT+TGG - chr7_4:53732484-53732503 Msa1162870:CDS 30.0%
ATAAACACGATTGAATAGAC+CGG + chr7_4:53732819-53732838 None:intergenic 30.0%
!! GATTCATTTTCTGAAGATGA+TGG + chr7_4:53732845-53732864 None:intergenic 30.0%
CTTCAGAAAATGAATCTCAA+TGG - chr7_4:53732849-53732868 Msa1162870:CDS 30.0%
TCAGAAAATGAATCTCAATG+GGG - chr7_4:53732851-53732870 Msa1162870:CDS 30.0%
AAAGTTTATGTTTACATGGC+AGG - chr7_4:53733142-53733161 Msa1162870:CDS 30.0%
ATTCTTCTTCATCCTTTGTT+TGG - chr7_4:53733250-53733269 Msa1162870:intron 30.0%
!! GATTCTGAAATGAGATTAGA+TGG - chr7_4:53733289-53733308 Msa1162870:intron 30.0%
TTAGATTACAAGATCGTGAT+TGG - chr7_4:53733323-53733342 Msa1162870:intron 30.0%
! GTTTGGATCTTTTACAAGAT+TGG - chr7_4:53733473-53733492 Msa1162870:intron 30.0%
! TCTTTTACAAGATTGGCAAT+TGG - chr7_4:53733480-53733499 Msa1162870:intron 30.0%
TAAACTTCTTTACCTTAAGG+AGG - chr7_4:53733540-53733559 Msa1162870:intron 30.0%
TGATCATTTCTATTGCCTTA+TGG - chr7_4:53733594-53733613 Msa1162870:CDS 30.0%
TTTAAGTACACACCATTACT+TGG + chr7_4:53733761-53733780 None:intergenic 30.0%
TCAGTAATTAGTACTACAAG+AGG + chr7_4:53733890-53733909 None:intergenic 30.0%
ACTAATTACTGAATGTGACA+TGG - chr7_4:53733898-53733917 Msa1162870:five_prime_UTR 30.0%
GGTGTATTAATTGAAGAGAA+GGG + chr7_4:53731960-53731979 None:intergenic 30.0%
TGGTGTATTAATTGAAGAGA+AGG + chr7_4:53731961-53731980 None:intergenic 30.0%
AGAGGAATAGAAAAAAACGT+TGG + chr7_4:53732085-53732104 None:intergenic 30.0%
!!! GTTTGCTTTGTTTTTGATGT+TGG - chr7_4:53732329-53732348 Msa1162870:CDS 30.0%
!!! ATATTTTTCTGTGGGTTAGT+TGG - chr7_4:53732410-53732429 Msa1162870:CDS 30.0%
! GGTTTCTTGTTATGGTAAAT+TGG - chr7_4:53732484-53732503 Msa1162870:CDS 30.0%
ATAAACACGATTGAATAGAC+CGG + chr7_4:53732819-53732838 None:intergenic 30.0%
!! GATTCATTTTCTGAAGATGA+TGG + chr7_4:53732845-53732864 None:intergenic 30.0%
CTTCAGAAAATGAATCTCAA+TGG - chr7_4:53732849-53732868 Msa1162870:CDS 30.0%
TCAGAAAATGAATCTCAATG+GGG - chr7_4:53732851-53732870 Msa1162870:CDS 30.0%
AAAGTTTATGTTTACATGGC+AGG - chr7_4:53733142-53733161 Msa1162870:CDS 30.0%
ATTCTTCTTCATCCTTTGTT+TGG - chr7_4:53733250-53733269 Msa1162870:intron 30.0%
!! GATTCTGAAATGAGATTAGA+TGG - chr7_4:53733289-53733308 Msa1162870:intron 30.0%
TTAGATTACAAGATCGTGAT+TGG - chr7_4:53733323-53733342 Msa1162870:intron 30.0%
! GTTTGGATCTTTTACAAGAT+TGG - chr7_4:53733473-53733492 Msa1162870:intron 30.0%
! TCTTTTACAAGATTGGCAAT+TGG - chr7_4:53733480-53733499 Msa1162870:intron 30.0%
TAAACTTCTTTACCTTAAGG+AGG - chr7_4:53733540-53733559 Msa1162870:intron 30.0%
TGATCATTTCTATTGCCTTA+TGG - chr7_4:53733594-53733613 Msa1162870:CDS 30.0%
TTTAAGTACACACCATTACT+TGG + chr7_4:53733761-53733780 None:intergenic 30.0%
TCAGTAATTAGTACTACAAG+AGG + chr7_4:53733890-53733909 None:intergenic 30.0%
ACTAATTACTGAATGTGACA+TGG - chr7_4:53733898-53733917 Msa1162870:five_prime_UTR 30.0%
AAGGGATTGAGTAAAGAAGA+AGG + chr7_4:53731942-53731961 None:intergenic 35.0%
AGTTTAATCTCAAAGGTTGG+TGG + chr7_4:53731981-53732000 None:intergenic 35.0%
!! AAGTGATGTGGGTTAGAAAA+GGG + chr7_4:53732051-53732070 None:intergenic 35.0%
TGAAAGAGTTGAAGTGATGT+GGG + chr7_4:53732062-53732081 None:intergenic 35.0%
TGGAAGATGATATATTACCC+TGG + chr7_4:53732271-53732290 None:intergenic 35.0%
ATGTGTTGGGTTTCTTGTTA+TGG - chr7_4:53732476-53732495 Msa1162870:CDS 35.0%
! AATCTTCTAAGAAGAGCAGA+TGG - chr7_4:53732692-53732711 Msa1162870:CDS 35.0%
CAAGAAACTCTGCTAAATCT+CGG + chr7_4:53732727-53732746 None:intergenic 35.0%
! TTGTAAAGCTGCTGTTGTTT+CGG - chr7_4:53733009-53733028 Msa1162870:CDS 35.0%
TTTCCATGTGCTTATGAAGA+TGG - chr7_4:53733061-53733080 Msa1162870:CDS 35.0%
AATGGGTGAAGTCAAGAAAA+TGG - chr7_4:53733098-53733117 Msa1162870:CDS 35.0%
TCAAGAAAATGGCTTCAAAG+TGG - chr7_4:53733109-53733128 Msa1162870:CDS 35.0%
CAAGAAAATGGCTTCAAAGT+GGG - chr7_4:53733110-53733129 Msa1162870:CDS 35.0%
! CAGAAGGAATTGAAGTGTTA+GGG - chr7_4:53733224-53733243 Msa1162870:intron 35.0%
!!! CTTTTTTCACCACCAAACAA+AGG + chr7_4:53733265-53733284 None:intergenic 35.0%
TACAAGATCGTGATTGGTAT+TGG - chr7_4:53733329-53733348 Msa1162870:intron 35.0%
!! TCCTAAAAGTCTTGTTTGTG+TGG - chr7_4:53733447-53733466 Msa1162870:intron 35.0%
! GTGGATGGTTTAAGGAATTT+TGG - chr7_4:53733508-53733527 Msa1162870:intron 35.0%
TCATTTCTATTGCCTTATGG+AGG - chr7_4:53733597-53733616 Msa1162870:CDS 35.0%
AGTTCTTGATTTCCTCCATA+AGG + chr7_4:53733612-53733631 None:intergenic 35.0%
! CTTTTGTTAAGTAAGGGTGA+AGG + chr7_4:53733668-53733687 None:intergenic 35.0%
!! TATGGTGGTCAATTTTAGAG+AGG - chr7_4:53733812-53733831 Msa1162870:five_prime_UTR 35.0%
TAGAGAGGAGATTGAAGATT+AGG - chr7_4:53733827-53733846 Msa1162870:five_prime_UTR 35.0%
GGAGATTGAAGATTAGGTAT+TGG - chr7_4:53733833-53733852 Msa1162870:five_prime_UTR 35.0%
!! GAAGATTAGGTATTGGTTGA+TGG - chr7_4:53733840-53733859 Msa1162870:five_prime_UTR 35.0%
!! TTAGGTATTGGTTGATGGTT+TGG - chr7_4:53733845-53733864 Msa1162870:five_prime_UTR 35.0%
!! TTGGTTGATGGTTTGGAATT+TGG - chr7_4:53733852-53733871 Msa1162870:five_prime_UTR 35.0%
!! TGGTTGATGGTTTGGAATTT+GGG - chr7_4:53733853-53733872 Msa1162870:five_prime_UTR 35.0%
AAGGGATTGAGTAAAGAAGA+AGG + chr7_4:53731942-53731961 None:intergenic 35.0%
AGTTTAATCTCAAAGGTTGG+TGG + chr7_4:53731981-53732000 None:intergenic 35.0%
!! AAGTGATGTGGGTTAGAAAA+GGG + chr7_4:53732051-53732070 None:intergenic 35.0%
TGAAAGAGTTGAAGTGATGT+GGG + chr7_4:53732062-53732081 None:intergenic 35.0%
TGGAAGATGATATATTACCC+TGG + chr7_4:53732271-53732290 None:intergenic 35.0%
ATGTGTTGGGTTTCTTGTTA+TGG - chr7_4:53732476-53732495 Msa1162870:CDS 35.0%
! AATCTTCTAAGAAGAGCAGA+TGG - chr7_4:53732692-53732711 Msa1162870:CDS 35.0%
CAAGAAACTCTGCTAAATCT+CGG + chr7_4:53732727-53732746 None:intergenic 35.0%
! TTGTAAAGCTGCTGTTGTTT+CGG - chr7_4:53733009-53733028 Msa1162870:CDS 35.0%
TTTCCATGTGCTTATGAAGA+TGG - chr7_4:53733061-53733080 Msa1162870:CDS 35.0%
AATGGGTGAAGTCAAGAAAA+TGG - chr7_4:53733098-53733117 Msa1162870:CDS 35.0%
TCAAGAAAATGGCTTCAAAG+TGG - chr7_4:53733109-53733128 Msa1162870:CDS 35.0%
CAAGAAAATGGCTTCAAAGT+GGG - chr7_4:53733110-53733129 Msa1162870:CDS 35.0%
! CAGAAGGAATTGAAGTGTTA+GGG - chr7_4:53733224-53733243 Msa1162870:intron 35.0%
!!! CTTTTTTCACCACCAAACAA+AGG + chr7_4:53733265-53733284 None:intergenic 35.0%
TACAAGATCGTGATTGGTAT+TGG - chr7_4:53733329-53733348 Msa1162870:intron 35.0%
!! TCCTAAAAGTCTTGTTTGTG+TGG - chr7_4:53733447-53733466 Msa1162870:intron 35.0%
! GTGGATGGTTTAAGGAATTT+TGG - chr7_4:53733508-53733527 Msa1162870:intron 35.0%
TCATTTCTATTGCCTTATGG+AGG - chr7_4:53733597-53733616 Msa1162870:CDS 35.0%
AGTTCTTGATTTCCTCCATA+AGG + chr7_4:53733612-53733631 None:intergenic 35.0%
! CTTTTGTTAAGTAAGGGTGA+AGG + chr7_4:53733668-53733687 None:intergenic 35.0%
!! TATGGTGGTCAATTTTAGAG+AGG - chr7_4:53733812-53733831 Msa1162870:five_prime_UTR 35.0%
TAGAGAGGAGATTGAAGATT+AGG - chr7_4:53733827-53733846 Msa1162870:five_prime_UTR 35.0%
GGAGATTGAAGATTAGGTAT+TGG - chr7_4:53733833-53733852 Msa1162870:five_prime_UTR 35.0%
!! GAAGATTAGGTATTGGTTGA+TGG - chr7_4:53733840-53733859 Msa1162870:five_prime_UTR 35.0%
!! TTAGGTATTGGTTGATGGTT+TGG - chr7_4:53733845-53733864 Msa1162870:five_prime_UTR 35.0%
!! TTGGTTGATGGTTTGGAATT+TGG - chr7_4:53733852-53733871 Msa1162870:five_prime_UTR 35.0%
!! TGGTTGATGGTTTGGAATTT+GGG - chr7_4:53733853-53733872 Msa1162870:five_prime_UTR 35.0%
! GATAAAAGTGTACGTAGCGT+AGG + chr7_4:53732020-53732039 None:intergenic 40.0%
!! GAAGTGATGTGGGTTAGAAA+AGG + chr7_4:53732052-53732071 None:intergenic 40.0%
GTGAAAGAGTTGAAGTGATG+TGG + chr7_4:53732063-53732082 None:intergenic 40.0%
CATGGAGAAGAGAACAAAAG+AGG + chr7_4:53732103-53732122 None:intergenic 40.0%
! CTTTTGTTCTCTTCTCCATG+AGG - chr7_4:53732103-53732122 Msa1162870:three_prime_UTR 40.0%
AGAAGAAAGAGTGATCCTCA+TGG + chr7_4:53732121-53732140 None:intergenic 40.0%
TACAACTAACCAGACATGAC+TGG - chr7_4:53732219-53732238 Msa1162870:CDS 40.0%
TCATTAGTACCAGTCATGTC+TGG + chr7_4:53732231-53732250 None:intergenic 40.0%
ATATTACCCTGGATTCACTG+AGG + chr7_4:53732260-53732279 None:intergenic 40.0%
!! GTGGGTTAGTTGGCTTAATT+TGG - chr7_4:53732420-53732439 Msa1162870:CDS 40.0%
GTTTCTTGACAGAAAAGTCC+CGG - chr7_4:53732739-53732758 Msa1162870:CDS 40.0%
AATGAAAAGACTCCATCGAC+CGG + chr7_4:53732776-53732795 None:intergenic 40.0%
GATCATATCGAACGAAACAC+CGG - chr7_4:53732797-53732816 Msa1162870:CDS 40.0%
CCATGGAAGAATACTATGAC+AGG + chr7_4:53732920-53732939 None:intergenic 40.0%
CCTGTCATAGTATTCTTCCA+TGG - chr7_4:53732917-53732936 Msa1162870:CDS 40.0%
GTCATAGTATTCTTCCATGG+TGG - chr7_4:53732920-53732939 Msa1162870:CDS 40.0%
! GCAGAAGGAATTGAAGTGTT+AGG - chr7_4:53733223-53733242 Msa1162870:intron 40.0%
! CTTCTTCATCCTTTGTTTGG+TGG - chr7_4:53733253-53733272 Msa1162870:intron 40.0%
!!! TGGAGAGCTTTTTTACCAGA+AGG - chr7_4:53733349-53733368 Msa1162870:intron 40.0%
! TTTTCCCCTTTTGGACCAAA+CGG + chr7_4:53733403-53733422 None:intergenic 40.0%
! GCCACACAAACAAGACTTTT+AGG + chr7_4:53733451-53733470 None:intergenic 40.0%
!! AAAAGTCTTGTTTGTGTGGC+TGG - chr7_4:53733451-53733470 Msa1162870:intron 40.0%
! AGATTGGCAATTGGCTTATG+TGG - chr7_4:53733489-53733508 Msa1162870:intron 40.0%
TGGCTTATGTGGATGGTTTA+AGG - chr7_4:53733500-53733519 Msa1162870:intron 40.0%
TACCTTAAGGAGGCTACTAT+TGG - chr7_4:53733550-53733569 Msa1162870:intron 40.0%
AACCAATAGTAGCCTCCTTA+AGG + chr7_4:53733555-53733574 None:intergenic 40.0%
!! GGTTGATGGTTTGGAATTTG+GGG - chr7_4:53733854-53733873 Msa1162870:five_prime_UTR 40.0%
! GATAAAAGTGTACGTAGCGT+AGG + chr7_4:53732020-53732039 None:intergenic 40.0%
!! GAAGTGATGTGGGTTAGAAA+AGG + chr7_4:53732052-53732071 None:intergenic 40.0%
GTGAAAGAGTTGAAGTGATG+TGG + chr7_4:53732063-53732082 None:intergenic 40.0%
CATGGAGAAGAGAACAAAAG+AGG + chr7_4:53732103-53732122 None:intergenic 40.0%
! CTTTTGTTCTCTTCTCCATG+AGG - chr7_4:53732103-53732122 Msa1162870:three_prime_UTR 40.0%
AGAAGAAAGAGTGATCCTCA+TGG + chr7_4:53732121-53732140 None:intergenic 40.0%
TACAACTAACCAGACATGAC+TGG - chr7_4:53732219-53732238 Msa1162870:CDS 40.0%
TCATTAGTACCAGTCATGTC+TGG + chr7_4:53732231-53732250 None:intergenic 40.0%
ATATTACCCTGGATTCACTG+AGG + chr7_4:53732260-53732279 None:intergenic 40.0%
!! GTGGGTTAGTTGGCTTAATT+TGG - chr7_4:53732420-53732439 Msa1162870:CDS 40.0%
GTTTCTTGACAGAAAAGTCC+CGG - chr7_4:53732739-53732758 Msa1162870:CDS 40.0%
AATGAAAAGACTCCATCGAC+CGG + chr7_4:53732776-53732795 None:intergenic 40.0%
GATCATATCGAACGAAACAC+CGG - chr7_4:53732797-53732816 Msa1162870:CDS 40.0%
CCATGGAAGAATACTATGAC+AGG + chr7_4:53732920-53732939 None:intergenic 40.0%
CCTGTCATAGTATTCTTCCA+TGG - chr7_4:53732917-53732936 Msa1162870:CDS 40.0%
GTCATAGTATTCTTCCATGG+TGG - chr7_4:53732920-53732939 Msa1162870:CDS 40.0%
! GCAGAAGGAATTGAAGTGTT+AGG - chr7_4:53733223-53733242 Msa1162870:intron 40.0%
! CTTCTTCATCCTTTGTTTGG+TGG - chr7_4:53733253-53733272 Msa1162870:intron 40.0%
!!! TGGAGAGCTTTTTTACCAGA+AGG - chr7_4:53733349-53733368 Msa1162870:intron 40.0%
! TTTTCCCCTTTTGGACCAAA+CGG + chr7_4:53733403-53733422 None:intergenic 40.0%
! GCCACACAAACAAGACTTTT+AGG + chr7_4:53733451-53733470 None:intergenic 40.0%
!! AAAAGTCTTGTTTGTGTGGC+TGG - chr7_4:53733451-53733470 Msa1162870:intron 40.0%
! AGATTGGCAATTGGCTTATG+TGG - chr7_4:53733489-53733508 Msa1162870:intron 40.0%
TGGCTTATGTGGATGGTTTA+AGG - chr7_4:53733500-53733519 Msa1162870:intron 40.0%
TACCTTAAGGAGGCTACTAT+TGG - chr7_4:53733550-53733569 Msa1162870:intron 40.0%
AACCAATAGTAGCCTCCTTA+AGG + chr7_4:53733555-53733574 None:intergenic 40.0%
!! GGTTGATGGTTTGGAATTTG+GGG - chr7_4:53733854-53733873 Msa1162870:five_prime_UTR 40.0%
! AAAAGTGTACGTAGCGTAGG+TGG + chr7_4:53732017-53732036 None:intergenic 45.0%
AAGTCAACCTCAGTGAATCC+AGG - chr7_4:53732250-53732269 Msa1162870:CDS 45.0%
AGTCAACCTCAGTGAATCCA+GGG - chr7_4:53732251-53732270 Msa1162870:CDS 45.0%
AATGAGAGAAGCTTCCACCA+TGG + chr7_4:53732937-53732956 None:intergenic 45.0%
GGTTAATTACCGACGATCAC+CGG - chr7_4:53733030-53733049 Msa1162870:CDS 45.0%
CAGCCATCTTCATAAGCACA+TGG + chr7_4:53733067-53733086 None:intergenic 45.0%
CATGTGCTTATGAAGATGGC+TGG - chr7_4:53733065-53733084 Msa1162870:CDS 45.0%
ATGGCTGGAATGCACTCAAA+TGG - chr7_4:53733080-53733099 Msa1162870:CDS 45.0%
TGGCTGGAATGCACTCAAAT+GGG - chr7_4:53733081-53733100 Msa1162870:CDS 45.0%
TACATGGCAGGTGATAGTTC+TGG - chr7_4:53733154-53733173 Msa1162870:CDS 45.0%
TGTAGCAGTAAAAGCTTGCG+AGG - chr7_4:53733195-53733214 Msa1162870:CDS 45.0%
TGGTCTCTATCTTCACCTTC+TGG + chr7_4:53733367-53733386 None:intergenic 45.0%
TGTAACCCGTTTGGTCCAAA+AGG - chr7_4:53733394-53733413 Msa1162870:intron 45.0%
GTAACCCGTTTGGTCCAAAA+GGG - chr7_4:53733395-53733414 Msa1162870:intron 45.0%
TAACCCGTTTGGTCCAAAAG+GGG - chr7_4:53733396-53733415 Msa1162870:intron 45.0%
! TTTCCCCTTTTGGACCAAAC+GGG + chr7_4:53733402-53733421 None:intergenic 45.0%
! TCTTGTTTGTGTGGCTGGTT+TGG - chr7_4:53733456-53733475 Msa1162870:intron 45.0%
! TGGCAATTGGCTTATGTGGA+TGG - chr7_4:53733493-53733512 Msa1162870:intron 45.0%
! AAAAGTGTACGTAGCGTAGG+TGG + chr7_4:53732017-53732036 None:intergenic 45.0%
AAGTCAACCTCAGTGAATCC+AGG - chr7_4:53732250-53732269 Msa1162870:CDS 45.0%
AGTCAACCTCAGTGAATCCA+GGG - chr7_4:53732251-53732270 Msa1162870:CDS 45.0%
AATGAGAGAAGCTTCCACCA+TGG + chr7_4:53732937-53732956 None:intergenic 45.0%
GGTTAATTACCGACGATCAC+CGG - chr7_4:53733030-53733049 Msa1162870:CDS 45.0%
CAGCCATCTTCATAAGCACA+TGG + chr7_4:53733067-53733086 None:intergenic 45.0%
CATGTGCTTATGAAGATGGC+TGG - chr7_4:53733065-53733084 Msa1162870:CDS 45.0%
ATGGCTGGAATGCACTCAAA+TGG - chr7_4:53733080-53733099 Msa1162870:CDS 45.0%
TGGCTGGAATGCACTCAAAT+GGG - chr7_4:53733081-53733100 Msa1162870:CDS 45.0%
TACATGGCAGGTGATAGTTC+TGG - chr7_4:53733154-53733173 Msa1162870:CDS 45.0%
TGTAGCAGTAAAAGCTTGCG+AGG - chr7_4:53733195-53733214 Msa1162870:CDS 45.0%
TGGTCTCTATCTTCACCTTC+TGG + chr7_4:53733367-53733386 None:intergenic 45.0%
TGTAACCCGTTTGGTCCAAA+AGG - chr7_4:53733394-53733413 Msa1162870:intron 45.0%
GTAACCCGTTTGGTCCAAAA+GGG - chr7_4:53733395-53733414 Msa1162870:intron 45.0%
TAACCCGTTTGGTCCAAAAG+GGG - chr7_4:53733396-53733415 Msa1162870:intron 45.0%
! TTTCCCCTTTTGGACCAAAC+GGG + chr7_4:53733402-53733421 None:intergenic 45.0%
! TCTTGTTTGTGTGGCTGGTT+TGG - chr7_4:53733456-53733475 Msa1162870:intron 45.0%
! TGGCAATTGGCTTATGTGGA+TGG - chr7_4:53733493-53733512 Msa1162870:intron 45.0%
AGTCCCGGCAAATGCTATTC+CGG - chr7_4:53732754-53732773 Msa1162870:CDS 50.0%
TCGACCGGAATAGCATTTGC+CGG + chr7_4:53732761-53732780 None:intergenic 50.0%
GCAAATGCTATTCCGGTCGA+TGG - chr7_4:53732761-53732780 Msa1162870:CDS 50.0%
GCACATGGAAACCGATACTC+CGG + chr7_4:53733052-53733071 None:intergenic 50.0%
!! ATGGCAGGTGATAGTTCTGG+TGG - chr7_4:53733157-53733176 Msa1162870:CDS 50.0%
GCTTGCGAGGAAAAAGCAGA+AGG - chr7_4:53733208-53733227 Msa1162870:intron 50.0%
!! GACCAAACGGGTTACAAGCA+GGG + chr7_4:53733390-53733409 None:intergenic 50.0%
AGTCCCGGCAAATGCTATTC+CGG - chr7_4:53732754-53732773 Msa1162870:CDS 50.0%
TCGACCGGAATAGCATTTGC+CGG + chr7_4:53732761-53732780 None:intergenic 50.0%
GCAAATGCTATTCCGGTCGA+TGG - chr7_4:53732761-53732780 Msa1162870:CDS 50.0%
GCACATGGAAACCGATACTC+CGG + chr7_4:53733052-53733071 None:intergenic 50.0%
!! ATGGCAGGTGATAGTTCTGG+TGG - chr7_4:53733157-53733176 Msa1162870:CDS 50.0%
GCTTGCGAGGAAAAAGCAGA+AGG - chr7_4:53733208-53733227 Msa1162870:intron 50.0%
!! GACCAAACGGGTTACAAGCA+GGG + chr7_4:53733390-53733409 None:intergenic 50.0%
CGACCGGAATAGCATTTGCC+GGG + chr7_4:53732760-53732779 None:intergenic 55.0%
ACCGACGATCACCGGAGTAT+CGG - chr7_4:53733038-53733057 Msa1162870:CDS 55.0%
ACCGATACTCCGGTGATCGT+CGG + chr7_4:53733042-53733061 None:intergenic 55.0%
!! CAAACGGGTTACAAGCAGGG+TGG + chr7_4:53733387-53733406 None:intergenic 55.0%
CACCCTGCTTGTAACCCGTT+TGG - chr7_4:53733385-53733404 Msa1162870:intron 55.0%
!! GGACCAAACGGGTTACAAGC+AGG + chr7_4:53733391-53733410 None:intergenic 55.0%
CGACCGGAATAGCATTTGCC+GGG + chr7_4:53732760-53732779 None:intergenic 55.0%
ACCGACGATCACCGGAGTAT+CGG - chr7_4:53733038-53733057 Msa1162870:CDS 55.0%
ACCGATACTCCGGTGATCGT+CGG + chr7_4:53733042-53733061 None:intergenic 55.0%
!! CAAACGGGTTACAAGCAGGG+TGG + chr7_4:53733387-53733406 None:intergenic 55.0%
CACCCTGCTTGTAACCCGTT+TGG - chr7_4:53733385-53733404 Msa1162870:intron 55.0%
!! GGACCAAACGGGTTACAAGC+AGG + chr7_4:53733391-53733410 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 53731922 53733932 53731922 ID=Msa1162870;Name=Msa1162870
chr7_4 mRNA 53731922 53733932 53731922 ID=Msa1162870-mRNA-1;Parent=Msa1162870;Name=Msa1162870-mRNA-1;_AED=0.01;_eAED=0.01;_QI=312|1|1|1|1|1|2|281|350
chr7_4 exon 53731922 53733216 53731922 ID=Msa1162870-mRNA-1:exon:15559;Parent=Msa1162870-mRNA-1
chr7_4 exon 53733582 53733932 53733582 ID=Msa1162870-mRNA-1:exon:15558;Parent=Msa1162870-mRNA-1
chr7_4 five_prime_UTR 53733621 53733932 53733621 ID=Msa1162870-mRNA-1:five_prime_utr;Parent=Msa1162870-mRNA-1
chr7_4 CDS 53733582 53733620 53733582 ID=Msa1162870-mRNA-1:cds;Parent=Msa1162870-mRNA-1
chr7_4 CDS 53732203 53733216 53732203 ID=Msa1162870-mRNA-1:cds;Parent=Msa1162870-mRNA-1
chr7_4 three_prime_UTR 53731922 53732202 53731922 ID=Msa1162870-mRNA-1:three_prime_utr;Parent=Msa1162870-mRNA-1
Gene Sequence

>Msa1162870

ATGACTGGTACTAATGAAGTCAACCTCAGTGAATCCAGGAGTGTTGTTCCATTGAATACATATGTTCTTATCTCAAATTTCAAGCTTGCTTACAATCTTCTAAGAAGAGCAGATGGAACATTCAACCGAGATTTAGCAGAGTTTCTTGACAGAAAAGTCCCGGCAAATGCTATTCCGGTCGATGGAGTCTTTTCATTCGATCATATCGAACGAAACACCGGTCTATTCAATCGTGTTTATCTACCATCATCTTCAGAAAATGAATCTCAATGGGGTGTCAAAGATTTAGAGAAACCATTAAGTACAACAGAAATTGTTCCTGTCATAGTATTCTTCCATGGTGGAAGCTTCTCTCATTCTTCAGCAAACAGTGCTATCTATGATACATTTTGTAGAAGGTTAGTAAGTGTTTGTAAAGCTGCTGTTGTTTCGGTTAATTACCGACGATCACCGGAGTATCGGTTTCCATGTGCTTATGAAGATGGCTGGAATGCACTCAAATGGGTGAAGTCAAGAAAATGGCTTCAAAGTGGGAAAGAAAAGAAAGTTTATGTTTACATGGCAGGTGATAGTTCTGGTGGAAACATTGTTCATCATGTAGCAGTAAAAGCTTGCGAGGAAAAAGCAGAAGGAATTGAAGTGTTAGGGAACATTCTTCTTCATCCTTTGTTTGGTGGTGAAAAAAGAACAGATTCTGAAATGAGATTAGATGGAAAGTACTTTGTTAGATTACAAGATCGTGATTGGTATTGGAGAGCTTTTTTACCAGAAGGTGAAGATAGAGACCACCCTGCTTGTAACCCGTTTGGTCCAAAAGGGGAAAAAAATATTAAAGGACTTGATAAATTTCCTAAAAGTCTTGTTTGTGTGGCTGGTTTGGATCTTTTACAAGATTGGCAATTGGCTTATGTGGATGGTTTAAGGAATTTTGGTCAAGATGTTAAACTTCTTTACCTTAAGGAGGCTACTATTGGTTTTTACTTCTTGCCTAATAATGATCATTTCTATTGCCTTATGGAGGAAATCAAGAACTTTGTTAATCCTAACTGTTAA

Protein sequence

>Msa1162870

MTGTNEVNLSESRSVVPLNTYVLISNFKLAYNLLRRADGTFNRDLAEFLDRKVPANAIPVDGVFSFDHIERNTGLFNRVYLPSSSENESQWGVKDLEKPLSTTEIVPVIVFFHGGSFSHSSANSAIYDTFCRRLVSVCKAAVVSVNYRRSPEYRFPCAYEDGWNALKWVKSRKWLQSGKEKKVYVYMAGDSSGGNIVHHVAVKACEEKAEGIEVLGNILLHPLFGGEKRTDSEMRLDGKYFVRLQDRDWYWRAFLPEGEDRDHPACNPFGPKGEKNIKGLDKFPKSLVCVAGLDLLQDWQLAYVDGLRNFGQDVKLLYLKEATIGFYFLPNNDHFYCLMEEIKNFVNPNC*