AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0288100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0288100 MtrunA17_Chr2g0305161 98.413 189 3 0 1 189 1 189 2.79e-139 386
Msa0288100 MtrunA17_Chr4g0065191 46.809 94 40 2 4 97 1 84 2.58e-16 70.9
Msa0288100 MtrunA17_Chr1g0207561 58.333 48 20 0 140 187 198 245 1.83e-14 69.3
Msa0288100 MtrunA17_Chr3g0121201 41.429 70 40 1 117 186 213 281 1.14e-13 68.2
Msa0288100 MtrunA17_Chr1g0169651 55.319 47 21 0 140 186 681 727 8.27e-13 66.2
Msa0288100 MtrunA17_Chr3g0112041 50.000 50 24 1 135 183 205 254 4.81e-12 63.2
Msa0288100 MtrunA17_Chr6g0451051 51.923 52 24 1 136 186 60 111 5.58e-12 60.8
Msa0288100 MtrunA17_Chr1g0150571 44.898 49 27 0 135 183 226 274 5.11e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0288100 AT2G15580.1 47.264 201 84 6 1 186 1 194 3.23e-51 163
Msa0288100 AT1G49850.1 62.000 50 19 0 137 186 198 247 1.49e-16 75.5
Msa0288100 AT2G15580.3 47.000 100 34 4 1 86 1 95 6.40e-16 70.5
Msa0288100 AT2G15580.2 47.000 100 34 4 1 86 1 95 8.21e-16 70.9
Msa0288100 AT1G55530.1 28.962 183 95 5 9 183 109 264 2.48e-13 67.4
Msa0288100 AT1G55530.2 28.962 183 95 5 9 183 109 264 2.48e-13 67.4
Msa0288100 AT1G04790.1 50.000 48 24 0 139 186 586 633 5.58e-13 67.0
Msa0288100 AT1G55530.3 55.102 49 22 0 135 183 183 231 1.72e-12 65.1
Msa0288100 AT3G13430.4 59.524 42 17 0 142 183 225 266 5.70e-12 63.5
Msa0288100 AT3G13430.3 59.524 42 17 0 142 183 225 266 5.70e-12 63.5
Msa0288100 AT3G13430.1 59.524 42 17 0 142 183 225 266 5.70e-12 63.5
Msa0288100 AT3G13430.2 59.524 42 17 0 142 183 225 266 5.70e-12 63.5
Msa0288100 AT1G68070.1 50.000 50 25 0 138 187 288 337 5.95e-12 63.5
Msa0288100 AT5G20910.1 48.980 49 25 0 135 183 223 271 1.15e-11 62.4
Msa0288100 AT1G74620.1 32.530 83 51 2 109 186 146 228 2.45e-11 61.2
Msa0288100 AT5G08139.1 52.381 42 20 0 142 183 309 350 7.18e-11 60.5

Find 60 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATACCTCTTATATTTATT+TGG 0.165927 2_3:+32043134 Msa0288100:five_prime_UTR
TGGAAGCATTCCTGCCATTT+TGG 0.188105 2_3:-32043387 None:intergenic
TATAAGAGGTATTCCTTAAT+AGG 0.257955 2_3:-32043125 None:intergenic
ACAACAAATTTAGACAATTA+AGG 0.274164 2_3:-32044314 None:intergenic
CAGAAAATCCTCCAGACTTA+TGG 0.295617 2_3:-32043439 None:intergenic
GTCCACCGACTCACCTATTA+AGG 0.310277 2_3:+32043112 Msa0288100:five_prime_UTR
GAGTTACAAACTGAGGTATA+TGG 0.311218 2_3:+32044061 Msa0288100:CDS
TTTGTCATCCAATCTTTGTT+TGG 0.351023 2_3:-32043743 None:intergenic
CTCCTACCATATTCTCATCT+TGG 0.373947 2_3:-32043708 None:intergenic
GTCACACCAAGATGAGAATA+TGG 0.386289 2_3:+32043702 Msa0288100:CDS
TTGCTCCAACTGAACTTCCT+TGG 0.389745 2_3:-32044100 None:intergenic
ATTCCACATGCTTGAAGCCT+TGG 0.391055 2_3:+32044224 Msa0288100:CDS
AAGAAATGAAAAGCTTGTTT+CGG 0.392647 2_3:-32043203 None:intergenic
TGAATGATTAGAACTGCTTT+TGG 0.405186 2_3:-32043266 None:intergenic
AAATTTGTTGTAGACTTTGT+TGG 0.406680 2_3:+32044326 Msa0288100:three_prime_UTR
CTTCTAGCTGATTCAACTCC+TGG 0.409347 2_3:-32043407 None:intergenic
TATTTCCTCATCATCTTCAA+TGG 0.411710 2_3:+32043538 Msa0288100:CDS
AGAGGATTGTGCTGTGTGTT+TGG 0.420957 2_3:+32044147 Msa0288100:CDS
AAAATGGCAGGAATGCTTCC+AGG 0.421917 2_3:+32043389 Msa0288100:exon
CCTCTTATATTTATTTGGTT+AGG 0.421945 2_3:+32043139 Msa0288100:five_prime_UTR
AGGAAATAGTGAAAATCTAA+AGG 0.434746 2_3:-32044294 None:intergenic
AGAAGACGTGTCCATAAGTC+TGG 0.443956 2_3:+32043428 Msa0288100:CDS
GTGGACAGAATTAGACCATA+TGG 0.444773 2_3:-32043095 None:intergenic
AAAGCATTATTATCTAAAAC+AGG 0.453933 2_3:+32043302 Msa0288100:five_prime_UTR
GGAAATAGTGAAAATCTAAA+GGG 0.456814 2_3:-32044293 None:intergenic
CCTAACCAAATAAATATAAG+AGG 0.459168 2_3:-32043139 None:intergenic
TATTCTCATCTTGGTGTGAC+TGG 0.474654 2_3:-32043699 None:intergenic
TGTTTGGAATCATTTAAGAT+TGG 0.475277 2_3:+32044163 Msa0288100:CDS
ATGAGGAAATACGAGATTCA+TGG 0.479758 2_3:-32043526 None:intergenic
AAAGGGTATCAGAAAACATA+AGG 0.481341 2_3:+32043776 Msa0288100:CDS
GAAAATCTTTAAAACCCATA+TGG 0.482018 2_3:+32043080 None:intergenic
TAGAGCAGCCAAACAAAGAT+TGG 0.490480 2_3:+32043735 Msa0288100:CDS
GAAAATCTAAAGGGAAAGAA+TGG 0.491291 2_3:-32044284 None:intergenic
AGTTACAAACTGAGGTATAT+GGG 0.503707 2_3:+32044062 Msa0288100:CDS
TCAGTTGGAGCAAATTGAGC+TGG 0.509816 2_3:+32044110 Msa0288100:CDS
AAATGAAAAGCTTGTTTCGG+TGG 0.513563 2_3:-32043200 None:intergenic
AACTTGTGTGCACAAGGTAA+AGG 0.529312 2_3:-32044199 None:intergenic
TGGACAGAATTAGACCATAT+GGG 0.533969 2_3:-32043094 None:intergenic
GTGGTCCAAGGAAGTTCAGT+TGG 0.539114 2_3:+32044095 Msa0288100:CDS
TGACAAATTCAGATCACAAA+GGG 0.548128 2_3:+32043759 Msa0288100:CDS
ATAATGCTTTGGTGACTGAC+AGG 0.548888 2_3:-32043289 None:intergenic
TAACCAAGGCTTCAAGCATG+TGG 0.558920 2_3:-32044227 None:intergenic
AAGAACATGAAGTGTGTGGA+AGG 0.571227 2_3:+32044019 Msa0288100:CDS
AATGAAAAGCTTGTTTCGGT+GGG 0.577944 2_3:-32043199 None:intergenic
CAAATTGAGCTGGAAAGCAT+CGG 0.579936 2_3:+32044120 Msa0288100:CDS
CTGGAAAGCATCGGAACAAG+AGG 0.580805 2_3:+32044129 Msa0288100:CDS
ACAAACCATTGAAGATGATG+AGG 0.590614 2_3:-32043543 None:intergenic
AAGGCTTCAAGCATGTGGAA+TGG 0.593453 2_3:-32044222 None:intergenic
GGACAAAGAAAAGTGGTCCA+AGG 0.620165 2_3:+32044083 Msa0288100:CDS
TTCCTTAATAGGTGAGTCGG+TGG 0.622438 2_3:-32043114 None:intergenic
GTATTCCTTAATAGGTGAGT+CGG 0.624545 2_3:-32043117 None:intergenic
GTATATGGGACAAAGAAAAG+TGG 0.626148 2_3:+32044076 Msa0288100:CDS
GAATGGAACTTGTGTGCACA+AGG 0.639361 2_3:-32044205 None:intergenic
CATAGAAGAGTTACAAACTG+AGG 0.641006 2_3:+32044054 Msa0288100:CDS
TTTGTTGGATGAATGAAGTG+AGG 0.658438 2_3:+32044341 Msa0288100:three_prime_UTR
ATGACAAATTCAGATCACAA+AGG 0.661195 2_3:+32043758 Msa0288100:CDS
AGAATGGTAGTTCTACAACA+TGG 0.664178 2_3:-32044268 None:intergenic
CACCAAGATGAGAATATGGT+AGG 0.666185 2_3:+32043706 Msa0288100:CDS
AGACGTGTCCATAAGTCTGG+AGG 0.667088 2_3:+32043431 Msa0288100:CDS
GTGTTATGAGAAGAAAACGA+TGG 0.751296 2_3:-32043467 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATAAAAAAAAAAAAA+AGG - chr2_3:32043613-32043632 None:intergenic 0.0%
!! TTATTTATTAATATTATTTA+TGG + chr2_3:32043645-32043664 Msa0288100:intron 0.0%
!! TATATATAAAAAAAAAAAAA+AGG - chr2_3:32043613-32043632 None:intergenic 0.0%
!! TTATTTATTAATATTATTTA+TGG + chr2_3:32043645-32043664 Msa0288100:intron 0.0%
!!! AAATAAAAAACTATCTTTTT+AGG - chr2_3:32043838-32043857 None:intergenic 10.0%
!!! AAATAAAAAACTATCTTTTT+AGG - chr2_3:32043838-32043857 None:intergenic 10.0%
!!! GAAAATAAATCAAAACTTTT+TGG - chr2_3:32043816-32043835 None:intergenic 15.0%
!!! GAAAATAAATCAAAACTTTT+TGG - chr2_3:32043816-32043835 None:intergenic 15.0%
!! GAATACCTCTTATATTTATT+TGG + chr2_3:32043134-32043153 Msa0288100:five_prime_UTR 20.0%
!!! TGTTTTAGATAATAATGCTT+TGG - chr2_3:32043303-32043322 None:intergenic 20.0%
!!! AAAGCATTATTATCTAAAAC+AGG + chr2_3:32043302-32043321 Msa0288100:five_prime_UTR 20.0%
!! ACAACAAATTTAGACAATTA+AGG - chr2_3:32044317-32044336 None:intergenic 20.0%
!! GAATACCTCTTATATTTATT+TGG + chr2_3:32043134-32043153 Msa0288100:five_prime_UTR 20.0%
!!! TGTTTTAGATAATAATGCTT+TGG - chr2_3:32043303-32043322 None:intergenic 20.0%
!!! AAAGCATTATTATCTAAAAC+AGG + chr2_3:32043302-32043321 Msa0288100:five_prime_UTR 20.0%
!! ACAACAAATTTAGACAATTA+AGG - chr2_3:32044317-32044336 None:intergenic 20.0%
!!! TATAAGAGGTATTCCTTAAT+AGG - chr2_3:32043128-32043147 None:intergenic 25.0%
! CCTAACCAAATAAATATAAG+AGG - chr2_3:32043142-32043161 None:intergenic 25.0%
! CCTCTTATATTTATTTGGTT+AGG + chr2_3:32043139-32043158 Msa0288100:five_prime_UTR 25.0%
!! AAGAAATGAAAAGCTTGTTT+CGG - chr2_3:32043206-32043225 None:intergenic 25.0%
! ATTAATCAGATCTAAGTTCT+AGG - chr2_3:32043926-32043945 None:intergenic 25.0%
!!! GAAACTTGTTATGTATTACT+AGG + chr2_3:32043993-32044012 Msa0288100:intron 25.0%
!! TGTTTGGAATCATTTAAGAT+TGG + chr2_3:32044163-32044182 Msa0288100:CDS 25.0%
!! TGTGAATTATTTTCTAACCA+AGG - chr2_3:32044244-32044263 None:intergenic 25.0%
! GGAAATAGTGAAAATCTAAA+GGG - chr2_3:32044296-32044315 None:intergenic 25.0%
! AGGAAATAGTGAAAATCTAA+AGG - chr2_3:32044297-32044316 None:intergenic 25.0%
!!! AAATTTGTTGTAGACTTTGT+TGG + chr2_3:32044326-32044345 Msa0288100:three_prime_UTR 25.0%
!!! TATAAGAGGTATTCCTTAAT+AGG - chr2_3:32043128-32043147 None:intergenic 25.0%
! CCTAACCAAATAAATATAAG+AGG - chr2_3:32043142-32043161 None:intergenic 25.0%
! CCTCTTATATTTATTTGGTT+AGG + chr2_3:32043139-32043158 Msa0288100:five_prime_UTR 25.0%
!! AAGAAATGAAAAGCTTGTTT+CGG - chr2_3:32043206-32043225 None:intergenic 25.0%
! ATTAATCAGATCTAAGTTCT+AGG - chr2_3:32043926-32043945 None:intergenic 25.0%
!!! GAAACTTGTTATGTATTACT+AGG + chr2_3:32043993-32044012 Msa0288100:intron 25.0%
!! TGTTTGGAATCATTTAAGAT+TGG + chr2_3:32044163-32044182 Msa0288100:CDS 25.0%
!! TGTGAATTATTTTCTAACCA+AGG - chr2_3:32044244-32044263 None:intergenic 25.0%
! GGAAATAGTGAAAATCTAAA+GGG - chr2_3:32044296-32044315 None:intergenic 25.0%
! AGGAAATAGTGAAAATCTAA+AGG - chr2_3:32044297-32044316 None:intergenic 25.0%
!!! AAATTTGTTGTAGACTTTGT+TGG + chr2_3:32044326-32044345 Msa0288100:three_prime_UTR 25.0%
! TGAATGATTAGAACTGCTTT+TGG - chr2_3:32043269-32043288 None:intergenic 30.0%
TTTGTTCAAACGCAGAAAAA+AGG + chr2_3:32043363-32043382 Msa0288100:five_prime_UTR 30.0%
TATTTCCTCATCATCTTCAA+TGG + chr2_3:32043538-32043557 Msa0288100:CDS 30.0%
TTTGTCATCCAATCTTTGTT+TGG - chr2_3:32043746-32043765 None:intergenic 30.0%
ATGACAAATTCAGATCACAA+AGG + chr2_3:32043758-32043777 Msa0288100:CDS 30.0%
TGACAAATTCAGATCACAAA+GGG + chr2_3:32043759-32043778 Msa0288100:CDS 30.0%
!! AAAGGGTATCAGAAAACATA+AGG + chr2_3:32043776-32043795 Msa0288100:CDS 30.0%
AGTTACAAACTGAGGTATAT+GGG + chr2_3:32044062-32044081 Msa0288100:CDS 30.0%
GAAAATCTAAAGGGAAAGAA+TGG - chr2_3:32044287-32044306 None:intergenic 30.0%
! TGAATGATTAGAACTGCTTT+TGG - chr2_3:32043269-32043288 None:intergenic 30.0%
TTTGTTCAAACGCAGAAAAA+AGG + chr2_3:32043363-32043382 Msa0288100:five_prime_UTR 30.0%
TATTTCCTCATCATCTTCAA+TGG + chr2_3:32043538-32043557 Msa0288100:CDS 30.0%
TTTGTCATCCAATCTTTGTT+TGG - chr2_3:32043746-32043765 None:intergenic 30.0%
ATGACAAATTCAGATCACAA+AGG + chr2_3:32043758-32043777 Msa0288100:CDS 30.0%
TGACAAATTCAGATCACAAA+GGG + chr2_3:32043759-32043778 Msa0288100:CDS 30.0%
!! AAAGGGTATCAGAAAACATA+AGG + chr2_3:32043776-32043795 Msa0288100:CDS 30.0%
AGTTACAAACTGAGGTATAT+GGG + chr2_3:32044062-32044081 Msa0288100:CDS 30.0%
GAAAATCTAAAGGGAAAGAA+TGG - chr2_3:32044287-32044306 None:intergenic 30.0%
TGGACAGAATTAGACCATAT+GGG - chr2_3:32043097-32043116 None:intergenic 35.0%
GTATTCCTTAATAGGTGAGT+CGG - chr2_3:32043120-32043139 None:intergenic 35.0%
! AATGAAAAGCTTGTTTCGGT+GGG - chr2_3:32043202-32043221 None:intergenic 35.0%
! AAATGAAAAGCTTGTTTCGG+TGG - chr2_3:32043203-32043222 None:intergenic 35.0%
GTGTTATGAGAAGAAAACGA+TGG - chr2_3:32043470-32043489 None:intergenic 35.0%
ATGAGGAAATACGAGATTCA+TGG - chr2_3:32043529-32043548 None:intergenic 35.0%
ACAAACCATTGAAGATGATG+AGG - chr2_3:32043546-32043565 None:intergenic 35.0%
GAAAAAGAACATGAAGTGTG+TGG + chr2_3:32044015-32044034 Msa0288100:CDS 35.0%
CATAGAAGAGTTACAAACTG+AGG + chr2_3:32044054-32044073 Msa0288100:CDS 35.0%
GAGTTACAAACTGAGGTATA+TGG + chr2_3:32044061-32044080 Msa0288100:CDS 35.0%
GTATATGGGACAAAGAAAAG+TGG + chr2_3:32044076-32044095 Msa0288100:CDS 35.0%
! AGAATGGTAGTTCTACAACA+TGG - chr2_3:32044271-32044290 None:intergenic 35.0%
TTTGTTGGATGAATGAAGTG+AGG + chr2_3:32044341-32044360 Msa0288100:three_prime_UTR 35.0%
TGGACAGAATTAGACCATAT+GGG - chr2_3:32043097-32043116 None:intergenic 35.0%
GTATTCCTTAATAGGTGAGT+CGG - chr2_3:32043120-32043139 None:intergenic 35.0%
! AATGAAAAGCTTGTTTCGGT+GGG - chr2_3:32043202-32043221 None:intergenic 35.0%
! AAATGAAAAGCTTGTTTCGG+TGG - chr2_3:32043203-32043222 None:intergenic 35.0%
GTGTTATGAGAAGAAAACGA+TGG - chr2_3:32043470-32043489 None:intergenic 35.0%
ATGAGGAAATACGAGATTCA+TGG - chr2_3:32043529-32043548 None:intergenic 35.0%
ACAAACCATTGAAGATGATG+AGG - chr2_3:32043546-32043565 None:intergenic 35.0%
GAAAAAGAACATGAAGTGTG+TGG + chr2_3:32044015-32044034 Msa0288100:CDS 35.0%
CATAGAAGAGTTACAAACTG+AGG + chr2_3:32044054-32044073 Msa0288100:CDS 35.0%
GAGTTACAAACTGAGGTATA+TGG + chr2_3:32044061-32044080 Msa0288100:CDS 35.0%
GTATATGGGACAAAGAAAAG+TGG + chr2_3:32044076-32044095 Msa0288100:CDS 35.0%
! AGAATGGTAGTTCTACAACA+TGG - chr2_3:32044271-32044290 None:intergenic 35.0%
TTTGTTGGATGAATGAAGTG+AGG + chr2_3:32044341-32044360 Msa0288100:three_prime_UTR 35.0%
GTGGACAGAATTAGACCATA+TGG - chr2_3:32043098-32043117 None:intergenic 40.0%
! ATAATGCTTTGGTGACTGAC+AGG - chr2_3:32043292-32043311 None:intergenic 40.0%
CGCAGAAAAAAGGACCAAAA+TGG + chr2_3:32043373-32043392 Msa0288100:exon 40.0%
GAAAAAAGGACCAAAATGGC+AGG + chr2_3:32043377-32043396 Msa0288100:exon 40.0%
CAGAAAATCCTCCAGACTTA+TGG - chr2_3:32043442-32043461 None:intergenic 40.0%
!! ACAAAAAGAAGAGCGTCTTG+AGG - chr2_3:32043492-32043511 None:intergenic 40.0%
! TATTCTCATCTTGGTGTGAC+TGG - chr2_3:32043702-32043721 None:intergenic 40.0%
GTCACACCAAGATGAGAATA+TGG + chr2_3:32043702-32043721 Msa0288100:CDS 40.0%
CACCAAGATGAGAATATGGT+AGG + chr2_3:32043706-32043725 Msa0288100:CDS 40.0%
CTCCTACCATATTCTCATCT+TGG - chr2_3:32043711-32043730 None:intergenic 40.0%
TAGAGCAGCCAAACAAAGAT+TGG + chr2_3:32043735-32043754 Msa0288100:CDS 40.0%
AAGAACATGAAGTGTGTGGA+AGG + chr2_3:32044019-32044038 Msa0288100:CDS 40.0%
! CAAATTGAGCTGGAAAGCAT+CGG + chr2_3:32044120-32044139 Msa0288100:CDS 40.0%
AACTTGTGTGCACAAGGTAA+AGG - chr2_3:32044202-32044221 None:intergenic 40.0%
GTGGACAGAATTAGACCATA+TGG - chr2_3:32043098-32043117 None:intergenic 40.0%
! ATAATGCTTTGGTGACTGAC+AGG - chr2_3:32043292-32043311 None:intergenic 40.0%
CGCAGAAAAAAGGACCAAAA+TGG + chr2_3:32043373-32043392 Msa0288100:exon 40.0%
GAAAAAAGGACCAAAATGGC+AGG + chr2_3:32043377-32043396 Msa0288100:exon 40.0%
CAGAAAATCCTCCAGACTTA+TGG - chr2_3:32043442-32043461 None:intergenic 40.0%
!! ACAAAAAGAAGAGCGTCTTG+AGG - chr2_3:32043492-32043511 None:intergenic 40.0%
! TATTCTCATCTTGGTGTGAC+TGG - chr2_3:32043702-32043721 None:intergenic 40.0%
GTCACACCAAGATGAGAATA+TGG + chr2_3:32043702-32043721 Msa0288100:CDS 40.0%
CACCAAGATGAGAATATGGT+AGG + chr2_3:32043706-32043725 Msa0288100:CDS 40.0%
CTCCTACCATATTCTCATCT+TGG - chr2_3:32043711-32043730 None:intergenic 40.0%
TAGAGCAGCCAAACAAAGAT+TGG + chr2_3:32043735-32043754 Msa0288100:CDS 40.0%
AAGAACATGAAGTGTGTGGA+AGG + chr2_3:32044019-32044038 Msa0288100:CDS 40.0%
! CAAATTGAGCTGGAAAGCAT+CGG + chr2_3:32044120-32044139 Msa0288100:CDS 40.0%
AACTTGTGTGCACAAGGTAA+AGG - chr2_3:32044202-32044221 None:intergenic 40.0%
TTCCTTAATAGGTGAGTCGG+TGG - chr2_3:32043117-32043136 None:intergenic 45.0%
!!! CTGCTTTTGGTGATGCTAGT+GGG - chr2_3:32043256-32043275 None:intergenic 45.0%
!!! ACTGCTTTTGGTGATGCTAG+TGG - chr2_3:32043257-32043276 None:intergenic 45.0%
!!! TGGAAGCATTCCTGCCATTT+TGG - chr2_3:32043390-32043409 None:intergenic 45.0%
AAAATGGCAGGAATGCTTCC+AGG + chr2_3:32043389-32043408 Msa0288100:exon 45.0%
! CTTCTAGCTGATTCAACTCC+TGG - chr2_3:32043410-32043429 None:intergenic 45.0%
AGAAGACGTGTCCATAAGTC+TGG + chr2_3:32043428-32043447 Msa0288100:CDS 45.0%
GGACAAAGAAAAGTGGTCCA+AGG + chr2_3:32044083-32044102 Msa0288100:CDS 45.0%
TTGCTCCAACTGAACTTCCT+TGG - chr2_3:32044103-32044122 None:intergenic 45.0%
TCAGTTGGAGCAAATTGAGC+TGG + chr2_3:32044110-32044129 Msa0288100:CDS 45.0%
AGAGGATTGTGCTGTGTGTT+TGG + chr2_3:32044147-32044166 Msa0288100:CDS 45.0%
GAATGGAACTTGTGTGCACA+AGG - chr2_3:32044208-32044227 None:intergenic 45.0%
AAGGCTTCAAGCATGTGGAA+TGG - chr2_3:32044225-32044244 None:intergenic 45.0%
ATTCCACATGCTTGAAGCCT+TGG + chr2_3:32044224-32044243 Msa0288100:CDS 45.0%
TAACCAAGGCTTCAAGCATG+TGG - chr2_3:32044230-32044249 None:intergenic 45.0%
TTCCTTAATAGGTGAGTCGG+TGG - chr2_3:32043117-32043136 None:intergenic 45.0%
!!! CTGCTTTTGGTGATGCTAGT+GGG - chr2_3:32043256-32043275 None:intergenic 45.0%
!!! ACTGCTTTTGGTGATGCTAG+TGG - chr2_3:32043257-32043276 None:intergenic 45.0%
!!! TGGAAGCATTCCTGCCATTT+TGG - chr2_3:32043390-32043409 None:intergenic 45.0%
AAAATGGCAGGAATGCTTCC+AGG + chr2_3:32043389-32043408 Msa0288100:exon 45.0%
! CTTCTAGCTGATTCAACTCC+TGG - chr2_3:32043410-32043429 None:intergenic 45.0%
AGAAGACGTGTCCATAAGTC+TGG + chr2_3:32043428-32043447 Msa0288100:CDS 45.0%
GGACAAAGAAAAGTGGTCCA+AGG + chr2_3:32044083-32044102 Msa0288100:CDS 45.0%
TTGCTCCAACTGAACTTCCT+TGG - chr2_3:32044103-32044122 None:intergenic 45.0%
TCAGTTGGAGCAAATTGAGC+TGG + chr2_3:32044110-32044129 Msa0288100:CDS 45.0%
AGAGGATTGTGCTGTGTGTT+TGG + chr2_3:32044147-32044166 Msa0288100:CDS 45.0%
GAATGGAACTTGTGTGCACA+AGG - chr2_3:32044208-32044227 None:intergenic 45.0%
AAGGCTTCAAGCATGTGGAA+TGG - chr2_3:32044225-32044244 None:intergenic 45.0%
ATTCCACATGCTTGAAGCCT+TGG + chr2_3:32044224-32044243 Msa0288100:CDS 45.0%
TAACCAAGGCTTCAAGCATG+TGG - chr2_3:32044230-32044249 None:intergenic 45.0%
!! GTCCACCGACTCACCTATTA+AGG + chr2_3:32043112-32043131 Msa0288100:five_prime_UTR 50.0%
AGACGTGTCCATAAGTCTGG+AGG + chr2_3:32043431-32043450 Msa0288100:CDS 50.0%
GTGGTCCAAGGAAGTTCAGT+TGG + chr2_3:32044095-32044114 Msa0288100:CDS 50.0%
!! CTGGAAAGCATCGGAACAAG+AGG + chr2_3:32044129-32044148 Msa0288100:CDS 50.0%
!! GTCCACCGACTCACCTATTA+AGG + chr2_3:32043112-32043131 Msa0288100:five_prime_UTR 50.0%
AGACGTGTCCATAAGTCTGG+AGG + chr2_3:32043431-32043450 Msa0288100:CDS 50.0%
GTGGTCCAAGGAAGTTCAGT+TGG + chr2_3:32044095-32044114 Msa0288100:CDS 50.0%
!! CTGGAAAGCATCGGAACAAG+AGG + chr2_3:32044129-32044148 Msa0288100:CDS 50.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 32043081 32044370 32043081 ID=Msa0288100;Name=Msa0288100
chr2_3 mRNA 32043081 32044370 32043081 ID=Msa0288100-mRNA-1;Parent=Msa0288100;Name=Msa0288100-mRNA-1;_AED=0.00;_eAED=0.00;_QI=311|1|1|1|1|1|3|70|189
chr2_3 exon 32043081 32043559 32043081 ID=Msa0288100-mRNA-1:exon:10796;Parent=Msa0288100-mRNA-1
chr2_3 exon 32043682 32043797 32043682 ID=Msa0288100-mRNA-1:exon:10797;Parent=Msa0288100-mRNA-1
chr2_3 exon 32044015 32044370 32044015 ID=Msa0288100-mRNA-1:exon:10798;Parent=Msa0288100-mRNA-1
chr2_3 five_prime_UTR 32043081 32043391 32043081 ID=Msa0288100-mRNA-1:five_prime_utr;Parent=Msa0288100-mRNA-1
chr2_3 CDS 32043392 32043559 32043392 ID=Msa0288100-mRNA-1:cds;Parent=Msa0288100-mRNA-1
chr2_3 CDS 32043682 32043797 32043682 ID=Msa0288100-mRNA-1:cds;Parent=Msa0288100-mRNA-1
chr2_3 CDS 32044015 32044300 32044015 ID=Msa0288100-mRNA-1:cds;Parent=Msa0288100-mRNA-1
chr2_3 three_prime_UTR 32044301 32044370 32044301 ID=Msa0288100-mRNA-1:three_prime_utr;Parent=Msa0288100-mRNA-1
Gene Sequence

>Msa0288100

ATGGCAGGAATGCTTCCAGGAGTTGAATCAGCTAGAAGAAGACGTGTCCATAAGTCTGGAGGATTTTCTGATTCACCATCGTTTTCTTCTCATAACACCTCAAGACGCTCTTCTTTTTGTTTGTATGCAAGTAACCATGAATCTCGTATTTCCTCATCATCTTCAATGCAAAGAAATATATTATACCAGTCACACCAAGATGAGAATATGGTAGGAGCAGCTAGAGCAGCCAAACAAAGATTGGATGACAAATTCAGATCACAAAGGGTATCAGAAAACATAAGGAAAAAGAACATGAAGTGTGTGGAAGGTAGAAACGAAAGCATAGAAGAGTTACAAACTGAGGTATATGGGACAAAGAAAAGTGGTCCAAGGAAGTTCAGTTGGAGCAAATTGAGCTGGAAAGCATCGGAACAAGAGGATTGTGCTGTGTGTTTGGAATCATTTAAGATTGGAGACAAATTGATTCCTTTACCTTGTGCACACAAGTTCCATTCCACATGCTTGAAGCCTTGGTTAGAAAATAATTCACACTGTCCATGTTGTAGAACTACCATTCTTTCCCTTTAG

Protein sequence

>Msa0288100

MAGMLPGVESARRRRVHKSGGFSDSPSFSSHNTSRRSSFCLYASNHESRISSSSSMQRNILYQSHQDENMVGAARAAKQRLDDKFRSQRVSENIRKKNMKCVEGRNESIEELQTEVYGTKKSGPRKFSWSKLSWKASEQEDCAVCLESFKIGDKLIPLPCAHKFHSTCLKPWLENNSHCPCCRTTILSL*