Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0487890 | XP_003598007.1 | 98.447 | 322 | 5 | 0 | 1 | 322 | 1 | 322 | 0.0 | 655 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0487890 | sp|A0A0B6VQ48|PAR1_ROSHC | 75.466 | 322 | 79 | 0 | 1 | 322 | 1 | 322 | 0.0 | 529 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0487890 | G7IYC6 | 98.447 | 322 | 5 | 0 | 1 | 322 | 1 | 322 | 0.0 | 655 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0392090 | Msa0487890 | 0.963382 | 5.120183e-122 | -8.615850e-47 |
| Msa0470000 | Msa0487890 | 0.930025 | 2.980925e-93 | -8.615850e-47 |
| Msa0470040 | Msa0487890 | 0.959942 | 5.318531e-118 | -8.615850e-47 |
| Msa0344610 | Msa0487890 | 0.942509 | 6.336837e-102 | -8.615850e-47 |
| Msa0487890 | Msa1225650 | 0.807650 | 4.557519e-50 | -8.615850e-47 |
| Msa0487890 | Msa1413190 | 0.806877 | 6.646476e-50 | -8.615850e-47 |
| Msa0487890 | Msa1429510 | 0.812913 | 3.336900e-51 | -8.615850e-47 |
| Msa0487890 | Msa1462780 | -0.801287 | 9.668724e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0487890 | MtrunA17_Chr3g0077231 | 98.447 | 322 | 5 | 0 | 1 | 322 | 1 | 322 | 0.0 | 655 |
| Msa0487890 | MtrunA17_Chr3g0077221 | 91.250 | 320 | 28 | 0 | 3 | 322 | 7 | 326 | 0.0 | 609 |
| Msa0487890 | MtrunA17_Chr8g0364051 | 71.384 | 318 | 90 | 1 | 5 | 322 | 7 | 323 | 2.49e-172 | 480 |
| Msa0487890 | MtrunA17_Chr8g0363831 | 69.811 | 318 | 95 | 1 | 5 | 322 | 8 | 324 | 2.05e-168 | 471 |
| Msa0487890 | MtrunA17_Chr4g0039311 | 66.981 | 318 | 105 | 0 | 5 | 322 | 10 | 327 | 9.23e-167 | 466 |
| Msa0487890 | MtrunA17_Chr4g0039321 | 65.846 | 325 | 108 | 1 | 1 | 322 | 1 | 325 | 4.97e-164 | 459 |
| Msa0487890 | MtrunA17_Chr5g0431311 | 47.826 | 322 | 162 | 5 | 3 | 321 | 2 | 320 | 1.13e-97 | 291 |
| Msa0487890 | MtrunA17_Chr4g0001321 | 49.682 | 314 | 149 | 6 | 6 | 317 | 17 | 323 | 3.70e-96 | 288 |
| Msa0487890 | MtrunA17_Chr2g0333781 | 46.605 | 324 | 164 | 6 | 1 | 322 | 15 | 331 | 8.72e-92 | 277 |
| Msa0487890 | MtrunA17_Chr3g0106111 | 43.302 | 321 | 176 | 5 | 3 | 320 | 2 | 319 | 2.98e-89 | 270 |
| Msa0487890 | MtrunA17_Chr2g0331211 | 43.987 | 316 | 169 | 6 | 6 | 317 | 5 | 316 | 3.66e-88 | 267 |
| Msa0487890 | MtrunA17_Chr1g0155411 | 42.056 | 321 | 177 | 5 | 3 | 317 | 5 | 322 | 9.30e-88 | 266 |
| Msa0487890 | MtrunA17_Chr5g0423551 | 41.824 | 318 | 178 | 6 | 7 | 320 | 5 | 319 | 1.95e-87 | 265 |
| Msa0487890 | MtrunA17_Chr1g0155431 | 39.571 | 326 | 184 | 6 | 3 | 320 | 5 | 325 | 1.99e-80 | 247 |
| Msa0487890 | MtrunA17_Chr4g0002661 | 42.767 | 318 | 172 | 7 | 2 | 316 | 9 | 319 | 3.57e-79 | 244 |
| Msa0487890 | MtrunA17_Chr2g0291541 | 40.615 | 325 | 179 | 9 | 5 | 321 | 9 | 327 | 1.49e-71 | 224 |
| Msa0487890 | MtrunA17_Chr4g0002961 | 42.767 | 318 | 172 | 7 | 2 | 316 | 9 | 319 | 1.68e-69 | 219 |
| Msa0487890 | MtrunA17_Chr4g0048961 | 38.820 | 322 | 181 | 7 | 7 | 315 | 15 | 333 | 9.66e-66 | 210 |
| Msa0487890 | MtrunA17_Chr7g0245671 | 37.117 | 326 | 190 | 6 | 6 | 320 | 8 | 329 | 3.97e-64 | 205 |
| Msa0487890 | MtrunA17_Chr7g0245741 | 35.168 | 327 | 192 | 8 | 6 | 320 | 8 | 326 | 1.65e-62 | 201 |
| Msa0487890 | MtrunA17_Chr4g0042101 | 38.532 | 327 | 172 | 11 | 7 | 311 | 25 | 344 | 6.89e-60 | 195 |
| Msa0487890 | MtrunA17_Chr7g0245691 | 35.671 | 328 | 193 | 9 | 6 | 320 | 8 | 330 | 5.26e-59 | 192 |
| Msa0487890 | MtrunA17_Chr7g0245731 | 34.877 | 324 | 197 | 8 | 6 | 320 | 58 | 376 | 1.06e-58 | 193 |
| Msa0487890 | MtrunA17_Chr7g0245641 | 35.890 | 326 | 194 | 8 | 6 | 320 | 45 | 366 | 4.26e-58 | 191 |
| Msa0487890 | MtrunA17_Chr3g0080551 | 77.586 | 116 | 25 | 1 | 97 | 211 | 13 | 128 | 3.26e-55 | 176 |
| Msa0487890 | MtrunA17_Chr7g0245631 | 36.765 | 272 | 164 | 4 | 6 | 272 | 8 | 276 | 1.83e-54 | 180 |
| Msa0487890 | MtrunA17_Chr4g0010991 | 35.000 | 280 | 168 | 5 | 2 | 272 | 4 | 278 | 8.26e-47 | 160 |
| Msa0487890 | MtrunA17_Chr7g0245711 | 32.292 | 288 | 182 | 7 | 41 | 320 | 6 | 288 | 3.53e-43 | 150 |
| Msa0487890 | MtrunA17_Chr4g0039331 | 44.324 | 185 | 50 | 5 | 89 | 272 | 2 | 134 | 8.37e-43 | 145 |
| Msa0487890 | MtrunA17_Chr5g0411071 | 28.758 | 306 | 196 | 8 | 1 | 300 | 7 | 296 | 9.45e-37 | 133 |
| Msa0487890 | MtrunA17_Chr2g0282001 | 31.834 | 289 | 178 | 5 | 6 | 275 | 7 | 295 | 2.68e-35 | 130 |
| Msa0487890 | MtrunA17_Chr6g0450211 | 30.195 | 308 | 185 | 11 | 5 | 296 | 54 | 347 | 7.15e-35 | 130 |
| Msa0487890 | MtrunA17_Chr2g0281991 | 31.488 | 289 | 179 | 6 | 6 | 275 | 8 | 296 | 8.85e-33 | 124 |
| Msa0487890 | MtrunA17_Chr2g0282011 | 31.741 | 293 | 173 | 6 | 6 | 275 | 8 | 296 | 5.53e-31 | 119 |
| Msa0487890 | MtrunA17_Chr7g0275521 | 32.323 | 297 | 173 | 10 | 6 | 278 | 7 | 299 | 5.55e-31 | 119 |
| Msa0487890 | MtrunA17_Chr1g0202161 | 91.071 | 56 | 5 | 0 | 104 | 159 | 43 | 98 | 1.65e-27 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0487890 | AT1G51410.1 | 73.817 | 317 | 83 | 0 | 6 | 322 | 9 | 325 | 0.0 | 509 |
| Msa0487890 | AT5G19440.1 | 75.472 | 318 | 78 | 0 | 5 | 322 | 9 | 326 | 0.0 | 509 |
| Msa0487890 | AT1G09510.1 | 53.918 | 319 | 147 | 0 | 2 | 320 | 4 | 322 | 1.15e-121 | 352 |
| Msa0487890 | AT1G09480.2 | 52.716 | 313 | 148 | 0 | 5 | 317 | 7 | 319 | 2.41e-116 | 339 |
| Msa0487890 | AT1G09480.1 | 52.215 | 316 | 151 | 0 | 2 | 317 | 51 | 366 | 5.43e-116 | 340 |
| Msa0487890 | AT1G66800.1 | 54.633 | 313 | 138 | 1 | 5 | 317 | 7 | 315 | 2.89e-115 | 336 |
| Msa0487890 | AT1G09490.1 | 52.077 | 313 | 150 | 0 | 5 | 317 | 7 | 319 | 2.25e-114 | 334 |
| Msa0487890 | AT1G09500.1 | 52.665 | 319 | 148 | 3 | 5 | 320 | 7 | 325 | 1.56e-112 | 329 |
| Msa0487890 | AT1G09500.3 | 53.818 | 275 | 126 | 1 | 2 | 275 | 4 | 278 | 1.35e-103 | 305 |
| Msa0487890 | AT4G35420.1 | 47.170 | 318 | 163 | 4 | 6 | 321 | 8 | 322 | 3.36e-101 | 300 |
| Msa0487890 | AT5G58490.1 | 46.562 | 320 | 165 | 5 | 5 | 321 | 8 | 324 | 5.12e-93 | 280 |
| Msa0487890 | AT1G15950.3 | 48.580 | 317 | 154 | 6 | 3 | 317 | 10 | 319 | 8.95e-92 | 277 |
| Msa0487890 | AT1G15950.1 | 48.580 | 317 | 154 | 6 | 3 | 317 | 10 | 319 | 8.95e-92 | 277 |
| Msa0487890 | AT1G09490.2 | 48.387 | 279 | 144 | 0 | 39 | 317 | 10 | 288 | 9.98e-92 | 275 |
| Msa0487890 | AT1G09500.2 | 49.477 | 287 | 142 | 3 | 37 | 320 | 5 | 291 | 1.02e-90 | 273 |
| Msa0487890 | AT1G15950.2 | 48.065 | 310 | 152 | 6 | 3 | 310 | 10 | 312 | 4.03e-88 | 268 |
| Msa0487890 | AT1G80820.1 | 46.395 | 319 | 162 | 7 | 1 | 317 | 3 | 314 | 1.94e-87 | 266 |
| Msa0487890 | AT2G02400.1 | 40.741 | 324 | 182 | 7 | 1 | 320 | 1 | 318 | 3.91e-82 | 251 |
| Msa0487890 | AT1G15950.6 | 49.635 | 274 | 130 | 5 | 3 | 275 | 10 | 276 | 1.11e-79 | 244 |
| Msa0487890 | AT1G15950.4 | 48.936 | 282 | 135 | 6 | 3 | 283 | 10 | 283 | 2.15e-79 | 244 |
| Msa0487890 | AT1G15950.5 | 49.632 | 272 | 129 | 5 | 3 | 273 | 10 | 274 | 5.30e-79 | 242 |
| Msa0487890 | AT1G68540.1 | 41.077 | 297 | 165 | 5 | 8 | 298 | 6 | 298 | 1.30e-78 | 243 |
| Msa0487890 | AT5G42800.1 | 40.187 | 321 | 183 | 5 | 6 | 320 | 8 | 325 | 1.54e-75 | 237 |
| Msa0487890 | AT1G80820.2 | 47.101 | 276 | 138 | 6 | 1 | 275 | 3 | 271 | 6.78e-74 | 229 |
| Msa0487890 | AT2G33590.1 | 41.379 | 319 | 178 | 6 | 6 | 321 | 9 | 321 | 1.81e-70 | 222 |
| Msa0487890 | AT1G25460.1 | 39.932 | 293 | 172 | 4 | 8 | 298 | 6 | 296 | 7.50e-68 | 215 |
| Msa0487890 | AT2G33600.1 | 42.236 | 322 | 171 | 8 | 6 | 321 | 9 | 321 | 2.30e-66 | 211 |
| Msa0487890 | AT1G76470.1 | 42.453 | 318 | 168 | 9 | 6 | 315 | 7 | 317 | 1.72e-65 | 209 |
| Msa0487890 | AT1G61720.1 | 36.196 | 326 | 190 | 6 | 3 | 316 | 10 | 329 | 5.36e-61 | 198 |
| Msa0487890 | AT4G27250.2 | 35.061 | 328 | 192 | 9 | 7 | 319 | 14 | 335 | 1.28e-53 | 179 |
| Msa0487890 | AT4G27250.1 | 35.015 | 337 | 190 | 11 | 7 | 319 | 14 | 345 | 3.16e-53 | 178 |
| Msa0487890 | AT1G15950.7 | 44.395 | 223 | 120 | 4 | 97 | 317 | 1 | 221 | 4.73e-52 | 172 |
| Msa0487890 | AT2G45400.1 | 32.899 | 307 | 197 | 3 | 3 | 300 | 37 | 343 | 1.74e-49 | 169 |
| Msa0487890 | AT2G45400.2 | 34.286 | 280 | 175 | 3 | 3 | 273 | 37 | 316 | 3.92e-49 | 167 |
| Msa0487890 | AT2G23910.2 | 30.515 | 272 | 178 | 6 | 7 | 275 | 11 | 274 | 5.78e-43 | 149 |
| Msa0487890 | AT2G23910.3 | 30.741 | 270 | 176 | 6 | 7 | 273 | 11 | 272 | 7.89e-43 | 149 |
| Msa0487890 | AT2G23910.1 | 30.741 | 270 | 176 | 6 | 7 | 273 | 11 | 272 | 1.12e-42 | 149 |
| Msa0487890 | AT4G30470.1 | 31.047 | 277 | 179 | 6 | 2 | 275 | 6 | 273 | 3.94e-42 | 148 |
| Msa0487890 | AT2G45400.4 | 36.530 | 219 | 132 | 2 | 3 | 214 | 37 | 255 | 1.18e-41 | 145 |
| Msa0487890 | AT1G68540.2 | 38.021 | 192 | 116 | 3 | 109 | 298 | 1 | 191 | 3.53e-41 | 143 |
| Msa0487890 | AT2G45400.3 | 29.630 | 270 | 183 | 2 | 38 | 300 | 17 | 286 | 3.91e-33 | 124 |
| Msa0487890 | AT2G23910.4 | 30.263 | 228 | 148 | 6 | 49 | 273 | 19 | 238 | 1.07e-32 | 122 |
| Msa0487890 | AT5G14700.1 | 25.763 | 295 | 188 | 9 | 2 | 278 | 51 | 332 | 4.69e-28 | 112 |
| Msa0487890 | AT5G14700.2 | 28.502 | 207 | 126 | 5 | 2 | 194 | 51 | 249 | 1.80e-23 | 98.2 |
| Msa0487890 | AT4G33360.2 | 24.125 | 257 | 168 | 7 | 6 | 256 | 15 | 250 | 7.50e-14 | 71.2 |
| Msa0487890 | AT4G33360.3 | 24.125 | 257 | 168 | 7 | 6 | 256 | 3 | 238 | 9.20e-14 | 71.2 |
| Msa0487890 | AT4G33360.1 | 24.125 | 257 | 168 | 7 | 6 | 256 | 15 | 250 | 1.16e-13 | 71.2 |
Find 69 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGGGAGATACGTTTAATT+TGG | 0.229039 | 3_4:+6983294 | None:intergenic |
| CAAAGAAAAGGCAACGAGTT+TGG | 0.233787 | 3_4:-6981661 | Msa0487890:CDS |
| ACCCATCCCAAAGTAGAATT+TGG | 0.245483 | 3_4:+6982556 | None:intergenic |
| CATTCTCGTATGCCAGAATA+TGG | 0.267945 | 3_4:+6982509 | None:intergenic |
| GCAATTCTAAACCTGATTAA+TGG | 0.275531 | 3_4:-6982851 | Msa0487890:intron |
| AATTATTAATCTTACTTCTC+TGG | 0.299337 | 3_4:+6982391 | None:intergenic |
| TAAAGAAAACAACATTGATA+TGG | 0.308617 | 3_4:-6982939 | Msa0487890:CDS |
| AACATTTCCAAATTCTACTT+TGG | 0.318580 | 3_4:-6982563 | Msa0487890:CDS |
| TTGCAGCAGCACTTGTGTTT+AGG | 0.321177 | 3_4:+6982870 | None:intergenic |
| TGTTGCAAATGCCCATATTC+TGG | 0.323215 | 3_4:-6982521 | Msa0487890:CDS |
| GTAATTAATTACCATTAATC+AGG | 0.328588 | 3_4:+6982840 | None:intergenic |
| AAAGAAAAGGCAACGAGTTT+GGG | 0.334596 | 3_4:-6981660 | Msa0487890:CDS |
| CAAGGCAAATCTACTTGAAC+AGG | 0.339055 | 3_4:-6983581 | Msa0487890:CDS |
| GCCTTTGATTCTGCTGTTCA+AGG | 0.346135 | 3_4:-6983556 | Msa0487890:CDS |
| GTCTTTGACATCATGATAGA+AGG | 0.357010 | 3_4:+6983504 | None:intergenic |
| ATTAACCCAGCAATGGTCAT+AGG | 0.359026 | 3_4:-6982911 | Msa0487890:CDS |
| AACTGATATGTAGGCACATA+TGG | 0.371044 | 3_4:+6981687 | None:intergenic |
| AGCTAGTGGAAGACATTGTT+TGG | 0.373238 | 3_4:-6982482 | Msa0487890:CDS |
| AGCAACGTTGTGTGTGTAAC+TGG | 0.375079 | 3_4:-6983956 | Msa0487890:CDS |
| ACCAAGTGGTTGATCTTCTT+CGG | 0.375522 | 3_4:+6983640 | None:intergenic |
| ACATTTCCAAATTCTACTTT+GGG | 0.382077 | 3_4:-6982562 | Msa0487890:CDS |
| AGAGGCCCTATGACCATTGC+TGG | 0.404733 | 3_4:+6982905 | None:intergenic |
| ATTATTAATCTTACTTCTCT+GGG | 0.410205 | 3_4:+6982392 | None:intergenic |
| GGGAATTGAATATACTCCTT+TGG | 0.411555 | 3_4:-6981640 | Msa0487890:CDS |
| ACGTTTCAGTGATGGCGATT+TGG | 0.412461 | 3_4:+6983420 | None:intergenic |
| GTGTGTGTAACTGGCGCTTC+AGG | 0.413471 | 3_4:-6983947 | Msa0487890:CDS |
| AACCACTTGGTTAAGCTTGA+AGG | 0.417225 | 3_4:-6983628 | Msa0487890:CDS |
| CTTCAGGTTACATAGCTTCA+TGG | 0.422476 | 3_4:-6983931 | Msa0487890:CDS |
| TCTTTGGAAAACTGATATGT+AGG | 0.433529 | 3_4:+6981678 | None:intergenic |
| TCCAAATTCTACTTTGGGAT+GGG | 0.448702 | 3_4:-6982557 | Msa0487890:CDS |
| GGAGAGATTACAATTATTCA+AGG | 0.452632 | 3_4:-6983599 | Msa0487890:CDS |
| CGCAACAGCAGCAGCAGAAG+AGG | 0.476034 | 3_4:+6983387 | None:intergenic |
| TTCCAAATTCTACTTTGGGA+TGG | 0.486039 | 3_4:-6982558 | Msa0487890:CDS |
| GTCTCGTCAACAACAACATC+AGG | 0.489728 | 3_4:+6983343 | None:intergenic |
| TCCTTGATGCTCACTTCCAA+AGG | 0.501654 | 3_4:+6981624 | None:intergenic |
| TTTAGGACTGGTTGCAAGAG+AGG | 0.512693 | 3_4:+6982887 | None:intergenic |
| TCATGATGTCAAAGACCCTC+AGG | 0.517650 | 3_4:-6983497 | Msa0487890:CDS |
| GCAGCACTTGTGTTTAGGAC+TGG | 0.518349 | 3_4:+6982875 | None:intergenic |
| TACGAGAATGCTTCAGCTAG+TGG | 0.518867 | 3_4:-6982496 | Msa0487890:CDS |
| TCTGCTGTTCAAGGCTGTCA+AGG | 0.530516 | 3_4:-6983547 | Msa0487890:CDS |
| GGTTAAGCTTGAAGGTGCTA+AGG | 0.535332 | 3_4:-6983620 | Msa0487890:CDS |
| ATGTTGTTGTTGACGAGACT+TGG | 0.540828 | 3_4:-6983339 | Msa0487890:CDS |
| TTAACCCAGCAATGGTCATA+GGG | 0.542832 | 3_4:-6982910 | Msa0487890:CDS |
| ATTCTCGTATGCCAGAATAT+GGG | 0.546372 | 3_4:+6982510 | None:intergenic |
| GCCTTGAACAGCAGAATCAA+AGG | 0.555036 | 3_4:+6983555 | None:intergenic |
| AAGACAACACGTTTCAGTGA+TGG | 0.558880 | 3_4:+6983412 | None:intergenic |
| TTGAGAGTACCGTTGAGTGC+AGG | 0.577644 | 3_4:+6983460 | None:intergenic |
| CACCTTCAAGCTTAACCAAG+TGG | 0.579342 | 3_4:+6983626 | None:intergenic |
| CATTGGCTGAAGAAGCTGCA+TGG | 0.580278 | 3_4:-6982970 | Msa0487890:CDS |
| TGACTTACTTGGGTCGCGAA+CGG | 0.581536 | 3_4:+6983865 | None:intergenic |
| CAGTGTAACCACGATGGAGA+AGG | 0.586371 | 3_4:+6983897 | None:intergenic |
| CTTACTTGGGTCGCGAACGG+TGG | 0.590707 | 3_4:+6983868 | None:intergenic |
| TCTTTGACATCATGATAGAA+GGG | 0.593847 | 3_4:+6983505 | None:intergenic |
| TTCTCTGGGAGTTGCAACGA+AGG | 0.598543 | 3_4:+6982406 | None:intergenic |
| TCCTTTGGAAGTGAGCATCA+AGG | 0.611448 | 3_4:-6981625 | Msa0487890:CDS |
| GGATCAATCAACTCAGCCTG+AGG | 0.624561 | 3_4:+6983481 | None:intergenic |
| TCCGAAGAAGATCAACCACT+TGG | 0.626562 | 3_4:-6983641 | Msa0487890:CDS |
| ACAACAACATCAGGAGTTCG+AGG | 0.628925 | 3_4:+6983352 | None:intergenic |
| GAGGCCCTATGACCATTGCT+GGG | 0.631385 | 3_4:+6982906 | None:intergenic |
| GATCAATCAACTCAGCCTGA+GGG | 0.632249 | 3_4:+6983482 | None:intergenic |
| GGTTACTATTAACCCAGCAA+TGG | 0.635018 | 3_4:-6982918 | Msa0487890:CDS |
| TTGATTGATCCTGCACTCAA+CGG | 0.644648 | 3_4:-6983469 | Msa0487890:CDS |
| GTTCGTTTCCTTCTCCATCG+TGG | 0.644846 | 3_4:-6983905 | Msa0487890:CDS |
| ACTGTTTCAGCTGTGGTATG+CGG | 0.647792 | 3_4:-6983002 | Msa0487890:intron |
| TCTCTGGGAGTTGCAACGAA+GGG | 0.653512 | 3_4:+6982407 | None:intergenic |
| TATATATGTTACCAGGTGTG+CGG | 0.694634 | 3_4:-6981718 | Msa0487890:intron |
| CTTTAACAGTGTAACCACGA+TGG | 0.707935 | 3_4:+6983891 | None:intergenic |
| GTATGCGGTTTCGAAAACAT+TGG | 0.716031 | 3_4:-6982987 | Msa0487890:CDS |
| AAGGCAAATCTACTTGAACA+GGG | 0.722044 | 3_4:-6983580 | Msa0487890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATCAAATCAAACATA+GGG | + | chr3_4:6981865-6981884 | None:intergenic | 15.0% |
| !! | ATAATAATCAAATCAAACAT+AGG | + | chr3_4:6981866-6981885 | None:intergenic | 15.0% |
| !!! | TATGTTTGATTTGATTATTA+TGG | - | chr3_4:6981865-6981884 | Msa0487890:intron | 15.0% |
| !! | ATTTATTACATGATTAATCA+TGG | + | chr3_4:6982481-6982500 | None:intergenic | 15.0% |
| !! | TATTTAATACATACAGAAAA+AGG | - | chr3_4:6983334-6983353 | Msa0487890:CDS | 15.0% |
| !!! | AATTAAGTGTTTCTAAAATA+AGG | - | chr3_4:6983627-6983646 | Msa0487890:CDS | 15.0% |
| !! | TATAAATGTAAATACAGAAA+TGG | + | chr3_4:6983751-6983770 | None:intergenic | 15.0% |
| !! | TAATAATCAAATCAAACATA+GGG | + | chr3_4:6981865-6981884 | None:intergenic | 15.0% |
| !! | ATAATAATCAAATCAAACAT+AGG | + | chr3_4:6981866-6981885 | None:intergenic | 15.0% |
| !!! | TATGTTTGATTTGATTATTA+TGG | - | chr3_4:6981865-6981884 | Msa0487890:intron | 15.0% |
| !! | ATTTATTACATGATTAATCA+TGG | + | chr3_4:6982481-6982500 | None:intergenic | 15.0% |
| !! | TATTTAATACATACAGAAAA+AGG | - | chr3_4:6983334-6983353 | Msa0487890:CDS | 15.0% |
| !!! | AATTAAGTGTTTCTAAAATA+AGG | - | chr3_4:6983627-6983646 | Msa0487890:CDS | 15.0% |
| !! | TATAAATGTAAATACAGAAA+TGG | + | chr3_4:6983751-6983770 | None:intergenic | 15.0% |
| !! | TAAAGAAAACAACATTGATA+TGG | - | chr3_4:6982604-6982623 | Msa0487890:intron | 20.0% |
| !! | GTAATTAATTACCATTAATC+AGG | + | chr3_4:6982706-6982725 | None:intergenic | 20.0% |
| !! | CCATTACAATAAAACAAAAA+TGG | + | chr3_4:6982728-6982747 | None:intergenic | 20.0% |
| !!! | CCATTTTTGTTTTATTGTAA+TGG | - | chr3_4:6982725-6982744 | Msa0487890:intron | 20.0% |
| !! | TAAAATTCAATAAGCAACAA+TGG | + | chr3_4:6982835-6982854 | None:intergenic | 20.0% |
| !! | ATTATTAATCTTACTTCTCT+GGG | + | chr3_4:6983154-6983173 | None:intergenic | 20.0% |
| !! | AATTATTAATCTTACTTCTC+TGG | + | chr3_4:6983155-6983174 | None:intergenic | 20.0% |
| !! | GAAAAATTTCAACAATTTAG+AGG | - | chr3_4:6983376-6983395 | Msa0487890:CDS | 20.0% |
| !!! | TGCACTTTTTAACATATATT+CGG | - | chr3_4:6983427-6983446 | Msa0487890:CDS | 20.0% |
| !! | TAAAGAAAACAACATTGATA+TGG | - | chr3_4:6982604-6982623 | Msa0487890:intron | 20.0% |
| !! | GTAATTAATTACCATTAATC+AGG | + | chr3_4:6982706-6982725 | None:intergenic | 20.0% |
| !! | CCATTACAATAAAACAAAAA+TGG | + | chr3_4:6982728-6982747 | None:intergenic | 20.0% |
| !!! | CCATTTTTGTTTTATTGTAA+TGG | - | chr3_4:6982725-6982744 | Msa0487890:intron | 20.0% |
| !! | TAAAATTCAATAAGCAACAA+TGG | + | chr3_4:6982835-6982854 | None:intergenic | 20.0% |
| !! | ATTATTAATCTTACTTCTCT+GGG | + | chr3_4:6983154-6983173 | None:intergenic | 20.0% |
| !! | AATTATTAATCTTACTTCTC+TGG | + | chr3_4:6983155-6983174 | None:intergenic | 20.0% |
| !! | GAAAAATTTCAACAATTTAG+AGG | - | chr3_4:6983376-6983395 | Msa0487890:CDS | 20.0% |
| !!! | TGCACTTTTTAACATATATT+CGG | - | chr3_4:6983427-6983446 | Msa0487890:CDS | 20.0% |
| !! | TGATTTTGTAAGTTTAGCTA+GGG | + | chr3_4:6982269-6982288 | None:intergenic | 25.0% |
| ! | TCATATCAAACGAAAATAAC+AGG | + | chr3_4:6982786-6982805 | None:intergenic | 25.0% |
| ! | AACATTTCCAAATTCTACTT+TGG | - | chr3_4:6982980-6982999 | Msa0487890:CDS | 25.0% |
| ! | ACATTTCCAAATTCTACTTT+GGG | - | chr3_4:6982981-6983000 | Msa0487890:CDS | 25.0% |
| ! | ATTATGTTCCTAAATGAATG+CGG | - | chr3_4:6983199-6983218 | Msa0487890:intron | 25.0% |
| ! | AATTCAGTGCTAAAAATGAA+AGG | - | chr3_4:6983276-6983295 | Msa0487890:intron | 25.0% |
| ! | ATGTATTAAATAAACAACCC+TGG | + | chr3_4:6983326-6983345 | None:intergenic | 25.0% |
| !! | GAAACCATGTTTTACATATT+GGG | + | chr3_4:6983461-6983480 | None:intergenic | 25.0% |
| !! | TGAAACCATGTTTTACATAT+TGG | + | chr3_4:6983462-6983481 | None:intergenic | 25.0% |
| ! | TACAGAAGACATAAAAATAG+AGG | + | chr3_4:6983540-6983559 | None:intergenic | 25.0% |
| ! | ACGAAAAATTCAGTACAAAT+TGG | + | chr3_4:6983585-6983604 | None:intergenic | 25.0% |
| !! | ACATTTAAAGTTGCTATACT+TGG | + | chr3_4:6983653-6983672 | None:intergenic | 25.0% |
| ! | AAGTATAGCAACTTTAAATG+TGG | - | chr3_4:6983652-6983671 | Msa0487890:intron | 25.0% |
| ! | GGATATTAAACAACATTTGT+AGG | + | chr3_4:6983683-6983702 | None:intergenic | 25.0% |
| ! | TGTTTAATATCCGAAATCAT+AGG | - | chr3_4:6983691-6983710 | Msa0487890:intron | 25.0% |
| ! | TAACCATTAACCTATGATTT+CGG | + | chr3_4:6983704-6983723 | None:intergenic | 25.0% |
| !! | ATATCAGTTTTCCAAAGAAA+AGG | - | chr3_4:6983870-6983889 | Msa0487890:intron | 25.0% |
| !! | TGATTTTGTAAGTTTAGCTA+GGG | + | chr3_4:6982269-6982288 | None:intergenic | 25.0% |
| ! | TCATATCAAACGAAAATAAC+AGG | + | chr3_4:6982786-6982805 | None:intergenic | 25.0% |
| ! | AACATTTCCAAATTCTACTT+TGG | - | chr3_4:6982980-6982999 | Msa0487890:CDS | 25.0% |
| ! | ACATTTCCAAATTCTACTTT+GGG | - | chr3_4:6982981-6983000 | Msa0487890:CDS | 25.0% |
| ! | ATTATGTTCCTAAATGAATG+CGG | - | chr3_4:6983199-6983218 | Msa0487890:intron | 25.0% |
| ! | AATTCAGTGCTAAAAATGAA+AGG | - | chr3_4:6983276-6983295 | Msa0487890:intron | 25.0% |
| ! | ATGTATTAAATAAACAACCC+TGG | + | chr3_4:6983326-6983345 | None:intergenic | 25.0% |
| !! | GAAACCATGTTTTACATATT+GGG | + | chr3_4:6983461-6983480 | None:intergenic | 25.0% |
| !! | TGAAACCATGTTTTACATAT+TGG | + | chr3_4:6983462-6983481 | None:intergenic | 25.0% |
| ! | TACAGAAGACATAAAAATAG+AGG | + | chr3_4:6983540-6983559 | None:intergenic | 25.0% |
| ! | ACGAAAAATTCAGTACAAAT+TGG | + | chr3_4:6983585-6983604 | None:intergenic | 25.0% |
| !! | ACATTTAAAGTTGCTATACT+TGG | + | chr3_4:6983653-6983672 | None:intergenic | 25.0% |
| ! | AAGTATAGCAACTTTAAATG+TGG | - | chr3_4:6983652-6983671 | Msa0487890:intron | 25.0% |
| ! | GGATATTAAACAACATTTGT+AGG | + | chr3_4:6983683-6983702 | None:intergenic | 25.0% |
| ! | TGTTTAATATCCGAAATCAT+AGG | - | chr3_4:6983691-6983710 | Msa0487890:intron | 25.0% |
| ! | TAACCATTAACCTATGATTT+CGG | + | chr3_4:6983704-6983723 | None:intergenic | 25.0% |
| !! | ATATCAGTTTTCCAAAGAAA+AGG | - | chr3_4:6983870-6983889 | Msa0487890:intron | 25.0% |
| GGAGAGATTACAATTATTCA+AGG | - | chr3_4:6981944-6981963 | Msa0487890:intron | 30.0% | |
| TCTTTGACATCATGATAGAA+GGG | + | chr3_4:6982041-6982060 | None:intergenic | 30.0% | |
| ! | GTGATTTTGTAAGTTTAGCT+AGG | + | chr3_4:6982270-6982289 | None:intergenic | 30.0% |
| ! | AGCAAGGACTAAATTGTTTT+TGG | - | chr3_4:6982347-6982366 | Msa0487890:intron | 30.0% |
| !!! | TAATGGTTTTGTTCCAATGT+CGG | - | chr3_4:6982433-6982452 | Msa0487890:CDS | 30.0% |
| TACATGATTAATCATGGCAT+TGG | + | chr3_4:6982475-6982494 | None:intergenic | 30.0% | |
| GCAATTCTAAACCTGATTAA+TGG | - | chr3_4:6982692-6982711 | Msa0487890:intron | 30.0% | |
| AATAAGCAACAATGGATGTT+GGG | + | chr3_4:6982827-6982846 | None:intergenic | 30.0% | |
| GTTTCTATGTGCTTCAAATA+TGG | - | chr3_4:6982885-6982904 | Msa0487890:CDS | 30.0% | |
| ATAAGAATCCGCATTCATTT+AGG | + | chr3_4:6983210-6983229 | None:intergenic | 30.0% | |
| TCATCACTAATATTTGATCC+AGG | - | chr3_4:6983305-6983324 | Msa0487890:intron | 30.0% | |
| CATCACTAATATTTGATCCA+GGG | - | chr3_4:6983306-6983325 | Msa0487890:CDS | 30.0% | |
| TTTAACATATATTCGGCTTC+TGG | - | chr3_4:6983434-6983453 | Msa0487890:CDS | 30.0% | |
| GAAGACATAAAAATAGAGGA+AGG | + | chr3_4:6983536-6983555 | None:intergenic | 30.0% | |
| TATCCGAAATCATAGGTTAA+TGG | - | chr3_4:6983698-6983717 | Msa0487890:intron | 30.0% | |
| TGTCAACTATATATGTTACC+AGG | - | chr3_4:6983818-6983837 | Msa0487890:intron | 30.0% | |
| ! | TCTTTGGAAAACTGATATGT+AGG | + | chr3_4:6983868-6983887 | None:intergenic | 30.0% |
| GGAGAGATTACAATTATTCA+AGG | - | chr3_4:6981944-6981963 | Msa0487890:intron | 30.0% | |
| TCTTTGACATCATGATAGAA+GGG | + | chr3_4:6982041-6982060 | None:intergenic | 30.0% | |
| ! | GTGATTTTGTAAGTTTAGCT+AGG | + | chr3_4:6982270-6982289 | None:intergenic | 30.0% |
| ! | AGCAAGGACTAAATTGTTTT+TGG | - | chr3_4:6982347-6982366 | Msa0487890:intron | 30.0% |
| !!! | TAATGGTTTTGTTCCAATGT+CGG | - | chr3_4:6982433-6982452 | Msa0487890:CDS | 30.0% |
| TACATGATTAATCATGGCAT+TGG | + | chr3_4:6982475-6982494 | None:intergenic | 30.0% | |
| GCAATTCTAAACCTGATTAA+TGG | - | chr3_4:6982692-6982711 | Msa0487890:intron | 30.0% | |
| AATAAGCAACAATGGATGTT+GGG | + | chr3_4:6982827-6982846 | None:intergenic | 30.0% | |
| GTTTCTATGTGCTTCAAATA+TGG | - | chr3_4:6982885-6982904 | Msa0487890:CDS | 30.0% | |
| ATAAGAATCCGCATTCATTT+AGG | + | chr3_4:6983210-6983229 | None:intergenic | 30.0% | |
| TCATCACTAATATTTGATCC+AGG | - | chr3_4:6983305-6983324 | Msa0487890:intron | 30.0% | |
| CATCACTAATATTTGATCCA+GGG | - | chr3_4:6983306-6983325 | Msa0487890:CDS | 30.0% | |
| TTTAACATATATTCGGCTTC+TGG | - | chr3_4:6983434-6983453 | Msa0487890:CDS | 30.0% | |
| GAAGACATAAAAATAGAGGA+AGG | + | chr3_4:6983536-6983555 | None:intergenic | 30.0% | |
| TATCCGAAATCATAGGTTAA+TGG | - | chr3_4:6983698-6983717 | Msa0487890:intron | 30.0% | |
| TGTCAACTATATATGTTACC+AGG | - | chr3_4:6983818-6983837 | Msa0487890:intron | 30.0% | |
| ! | TCTTTGGAAAACTGATATGT+AGG | + | chr3_4:6983868-6983887 | None:intergenic | 30.0% |
| GAGAAGAGAATGACTTACTT+GGG | + | chr3_4:6981691-6981710 | None:intergenic | 35.0% | |
| AGAGAAGAGAATGACTTACT+TGG | + | chr3_4:6981692-6981711 | None:intergenic | 35.0% | |
| AAGGCAAATCTACTTGAACA+GGG | - | chr3_4:6981963-6981982 | Msa0487890:intron | 35.0% | |
| GTCTTTGACATCATGATAGA+AGG | + | chr3_4:6982042-6982061 | None:intergenic | 35.0% | |
| CTAGGGAGATACGTTTAATT+TGG | + | chr3_4:6982252-6982271 | None:intergenic | 35.0% | |
| !! | CCTTGCTATTGAAGATGTTA+TGG | + | chr3_4:6982334-6982353 | None:intergenic | 35.0% |
| CCATAACATCTTCAATAGCA+AGG | - | chr3_4:6982331-6982350 | Msa0487890:intron | 35.0% | |
| AACCATTAGCTAGCATGTTA+TGG | + | chr3_4:6982421-6982440 | None:intergenic | 35.0% | |
| ATAAGCAACAATGGATGTTG+GGG | + | chr3_4:6982826-6982845 | None:intergenic | 35.0% | |
| CAATAAGCAACAATGGATGT+TGG | + | chr3_4:6982828-6982847 | None:intergenic | 35.0% | |
| CAAATATGGTTGTGTTCAAG+AGG | - | chr3_4:6982899-6982918 | Msa0487890:CDS | 35.0% | |
| ATGTTTGTGTACCTGTATCA+AGG | + | chr3_4:6982965-6982984 | None:intergenic | 35.0% | |
| ! | TTCCAAATTCTACTTTGGGA+TGG | - | chr3_4:6982985-6983004 | Msa0487890:CDS | 35.0% |
| !! | TCCAAATTCTACTTTGGGAT+GGG | - | chr3_4:6982986-6983005 | Msa0487890:CDS | 35.0% |
| ATTCTCGTATGCCAGAATAT+GGG | + | chr3_4:6983036-6983055 | None:intergenic | 35.0% | |
| AATGAATGCGGATTCTTATC+TGG | - | chr3_4:6983211-6983230 | Msa0487890:intron | 35.0% | |
| CACTGAATTGAGTTTCAAAC+AGG | + | chr3_4:6983265-6983284 | None:intergenic | 35.0% | |
| TGGACCCAATATGTAAAACA+TGG | - | chr3_4:6983454-6983473 | Msa0487890:CDS | 35.0% | |
| ! | TTTCACAGATGTTTTGCTAC+TGG | - | chr3_4:6983477-6983496 | Msa0487890:CDS | 35.0% |
| ! | TTCACAGATGTTTTGCTACT+GGG | - | chr3_4:6983478-6983497 | Msa0487890:CDS | 35.0% |
| TATATATGTTACCAGGTGTG+CGG | - | chr3_4:6983825-6983844 | Msa0487890:intron | 35.0% | |
| AACTGATATGTAGGCACATA+TGG | + | chr3_4:6983859-6983878 | None:intergenic | 35.0% | |
| AAAGAAAAGGCAACGAGTTT+GGG | - | chr3_4:6983883-6983902 | Msa0487890:CDS | 35.0% | |
| GGGAATTGAATATACTCCTT+TGG | - | chr3_4:6983903-6983922 | Msa0487890:CDS | 35.0% | |
| GAGAAGAGAATGACTTACTT+GGG | + | chr3_4:6981691-6981710 | None:intergenic | 35.0% | |
| AGAGAAGAGAATGACTTACT+TGG | + | chr3_4:6981692-6981711 | None:intergenic | 35.0% | |
| AAGGCAAATCTACTTGAACA+GGG | - | chr3_4:6981963-6981982 | Msa0487890:intron | 35.0% | |
| GTCTTTGACATCATGATAGA+AGG | + | chr3_4:6982042-6982061 | None:intergenic | 35.0% | |
| CTAGGGAGATACGTTTAATT+TGG | + | chr3_4:6982252-6982271 | None:intergenic | 35.0% | |
| !! | CCTTGCTATTGAAGATGTTA+TGG | + | chr3_4:6982334-6982353 | None:intergenic | 35.0% |
| CCATAACATCTTCAATAGCA+AGG | - | chr3_4:6982331-6982350 | Msa0487890:intron | 35.0% | |
| AACCATTAGCTAGCATGTTA+TGG | + | chr3_4:6982421-6982440 | None:intergenic | 35.0% | |
| ATAAGCAACAATGGATGTTG+GGG | + | chr3_4:6982826-6982845 | None:intergenic | 35.0% | |
| CAATAAGCAACAATGGATGT+TGG | + | chr3_4:6982828-6982847 | None:intergenic | 35.0% | |
| CAAATATGGTTGTGTTCAAG+AGG | - | chr3_4:6982899-6982918 | Msa0487890:CDS | 35.0% | |
| ATGTTTGTGTACCTGTATCA+AGG | + | chr3_4:6982965-6982984 | None:intergenic | 35.0% | |
| ! | TTCCAAATTCTACTTTGGGA+TGG | - | chr3_4:6982985-6983004 | Msa0487890:CDS | 35.0% |
| !! | TCCAAATTCTACTTTGGGAT+GGG | - | chr3_4:6982986-6983005 | Msa0487890:CDS | 35.0% |
| ATTCTCGTATGCCAGAATAT+GGG | + | chr3_4:6983036-6983055 | None:intergenic | 35.0% | |
| AATGAATGCGGATTCTTATC+TGG | - | chr3_4:6983211-6983230 | Msa0487890:intron | 35.0% | |
| CACTGAATTGAGTTTCAAAC+AGG | + | chr3_4:6983265-6983284 | None:intergenic | 35.0% | |
| TGGACCCAATATGTAAAACA+TGG | - | chr3_4:6983454-6983473 | Msa0487890:CDS | 35.0% | |
| ! | TTTCACAGATGTTTTGCTAC+TGG | - | chr3_4:6983477-6983496 | Msa0487890:CDS | 35.0% |
| ! | TTCACAGATGTTTTGCTACT+GGG | - | chr3_4:6983478-6983497 | Msa0487890:CDS | 35.0% |
| TATATATGTTACCAGGTGTG+CGG | - | chr3_4:6983825-6983844 | Msa0487890:intron | 35.0% | |
| AACTGATATGTAGGCACATA+TGG | + | chr3_4:6983859-6983878 | None:intergenic | 35.0% | |
| AAAGAAAAGGCAACGAGTTT+GGG | - | chr3_4:6983883-6983902 | Msa0487890:CDS | 35.0% | |
| GGGAATTGAATATACTCCTT+TGG | - | chr3_4:6983903-6983922 | Msa0487890:CDS | 35.0% | |
| ! | CTTCAGGTTACATAGCTTCA+TGG | - | chr3_4:6981612-6981631 | Msa0487890:CDS | 40.0% |
| CTTTAACAGTGTAACCACGA+TGG | + | chr3_4:6981655-6981674 | None:intergenic | 40.0% | |
| ACGGACATAGACACAAACAT+CGG | + | chr3_4:6981826-6981845 | None:intergenic | 40.0% | |
| ATCTTCTTCGGATCATCTAC+AGG | + | chr3_4:6981894-6981913 | None:intergenic | 40.0% | |
| ACCAAGTGGTTGATCTTCTT+CGG | + | chr3_4:6981906-6981925 | None:intergenic | 40.0% | |
| AACCACTTGGTTAAGCTTGA+AGG | - | chr3_4:6981915-6981934 | Msa0487890:intron | 40.0% | |
| CAAGGCAAATCTACTTGAAC+AGG | - | chr3_4:6981962-6981981 | Msa0487890:intron | 40.0% | |
| TTGATTGATCCTGCACTCAA+CGG | - | chr3_4:6982074-6982093 | Msa0487890:intron | 40.0% | |
| AAGACAACACGTTTCAGTGA+TGG | + | chr3_4:6982134-6982153 | None:intergenic | 40.0% | |
| ! | ATGTTGTTGTTGACGAGACT+TGG | - | chr3_4:6982204-6982223 | Msa0487890:intron | 40.0% |
| GTCCATAACATGCTAGCTAA+TGG | - | chr3_4:6982416-6982435 | Msa0487890:CDS | 40.0% | |
| !! | GATTAATCATGGCATTGGCA+TGG | + | chr3_4:6982470-6982489 | None:intergenic | 40.0% |
| GTATGCGGTTTCGAAAACAT+TGG | - | chr3_4:6982556-6982575 | Msa0487890:CDS | 40.0% | |
| GGTTACTATTAACCCAGCAA+TGG | - | chr3_4:6982625-6982644 | Msa0487890:intron | 40.0% | |
| ATTAACCCAGCAATGGTCAT+AGG | - | chr3_4:6982632-6982651 | Msa0487890:intron | 40.0% | |
| TTAACCCAGCAATGGTCATA+GGG | - | chr3_4:6982633-6982652 | Msa0487890:intron | 40.0% | |
| AGAGAGCTATTATCTGCAGA+AGG | + | chr3_4:6982937-6982956 | None:intergenic | 40.0% | |
| ACCCATCCCAAAGTAGAATT+TGG | + | chr3_4:6982990-6983009 | None:intergenic | 40.0% | |
| TGTTGCAAATGCCCATATTC+TGG | - | chr3_4:6983022-6983041 | Msa0487890:intron | 40.0% | |
| CATTCTCGTATGCCAGAATA+TGG | + | chr3_4:6983037-6983056 | None:intergenic | 40.0% | |
| AGCTAGTGGAAGACATTGTT+TGG | - | chr3_4:6983061-6983080 | Msa0487890:intron | 40.0% | |
| TTGCTACTGGGTAACTTGAA+TGG | - | chr3_4:6983490-6983509 | Msa0487890:CDS | 40.0% | |
| ! | CAAACTCGTTGCCTTTTCTT+TGG | + | chr3_4:6983884-6983903 | None:intergenic | 40.0% |
| CAAAGAAAAGGCAACGAGTT+TGG | - | chr3_4:6983882-6983901 | Msa0487890:CDS | 40.0% | |
| ! | CTTCAGGTTACATAGCTTCA+TGG | - | chr3_4:6981612-6981631 | Msa0487890:CDS | 40.0% |
| CTTTAACAGTGTAACCACGA+TGG | + | chr3_4:6981655-6981674 | None:intergenic | 40.0% | |
| ACGGACATAGACACAAACAT+CGG | + | chr3_4:6981826-6981845 | None:intergenic | 40.0% | |
| ATCTTCTTCGGATCATCTAC+AGG | + | chr3_4:6981894-6981913 | None:intergenic | 40.0% | |
| ACCAAGTGGTTGATCTTCTT+CGG | + | chr3_4:6981906-6981925 | None:intergenic | 40.0% | |
| AACCACTTGGTTAAGCTTGA+AGG | - | chr3_4:6981915-6981934 | Msa0487890:intron | 40.0% | |
| CAAGGCAAATCTACTTGAAC+AGG | - | chr3_4:6981962-6981981 | Msa0487890:intron | 40.0% | |
| TTGATTGATCCTGCACTCAA+CGG | - | chr3_4:6982074-6982093 | Msa0487890:intron | 40.0% | |
| AAGACAACACGTTTCAGTGA+TGG | + | chr3_4:6982134-6982153 | None:intergenic | 40.0% | |
| ! | ATGTTGTTGTTGACGAGACT+TGG | - | chr3_4:6982204-6982223 | Msa0487890:intron | 40.0% |
| GTCCATAACATGCTAGCTAA+TGG | - | chr3_4:6982416-6982435 | Msa0487890:CDS | 40.0% | |
| !! | GATTAATCATGGCATTGGCA+TGG | + | chr3_4:6982470-6982489 | None:intergenic | 40.0% |
| GTATGCGGTTTCGAAAACAT+TGG | - | chr3_4:6982556-6982575 | Msa0487890:CDS | 40.0% | |
| GGTTACTATTAACCCAGCAA+TGG | - | chr3_4:6982625-6982644 | Msa0487890:intron | 40.0% | |
| ATTAACCCAGCAATGGTCAT+AGG | - | chr3_4:6982632-6982651 | Msa0487890:intron | 40.0% | |
| TTAACCCAGCAATGGTCATA+GGG | - | chr3_4:6982633-6982652 | Msa0487890:intron | 40.0% | |
| AGAGAGCTATTATCTGCAGA+AGG | + | chr3_4:6982937-6982956 | None:intergenic | 40.0% | |
| ACCCATCCCAAAGTAGAATT+TGG | + | chr3_4:6982990-6983009 | None:intergenic | 40.0% | |
| TGTTGCAAATGCCCATATTC+TGG | - | chr3_4:6983022-6983041 | Msa0487890:intron | 40.0% | |
| CATTCTCGTATGCCAGAATA+TGG | + | chr3_4:6983037-6983056 | None:intergenic | 40.0% | |
| AGCTAGTGGAAGACATTGTT+TGG | - | chr3_4:6983061-6983080 | Msa0487890:intron | 40.0% | |
| TTGCTACTGGGTAACTTGAA+TGG | - | chr3_4:6983490-6983509 | Msa0487890:CDS | 40.0% | |
| ! | CAAACTCGTTGCCTTTTCTT+TGG | + | chr3_4:6983884-6983903 | None:intergenic | 40.0% |
| CAAAGAAAAGGCAACGAGTT+TGG | - | chr3_4:6983882-6983901 | Msa0487890:CDS | 40.0% | |
| AGCAACGTTGTGTGTGTAAC+TGG | - | chr3_4:6981587-6981606 | Msa0487890:CDS | 45.0% | |
| CATAGACACAAACATCGGAC+AGG | + | chr3_4:6981821-6981840 | None:intergenic | 45.0% | |
| GGGTCAAAACGTATGAAGCA+CGG | + | chr3_4:6981845-6981864 | None:intergenic | 45.0% | |
| TCCGAAGAAGATCAACCACT+TGG | - | chr3_4:6981902-6981921 | Msa0487890:intron | 45.0% | |
| CACCTTCAAGCTTAACCAAG+TGG | + | chr3_4:6981920-6981939 | None:intergenic | 45.0% | |
| !! | GGTTAAGCTTGAAGGTGCTA+AGG | - | chr3_4:6981923-6981942 | Msa0487890:intron | 45.0% |
| GCCTTTGATTCTGCTGTTCA+AGG | - | chr3_4:6981987-6982006 | Msa0487890:intron | 45.0% | |
| GCCTTGAACAGCAGAATCAA+AGG | + | chr3_4:6981991-6982010 | None:intergenic | 45.0% | |
| TCATGATGTCAAAGACCCTC+AGG | - | chr3_4:6982046-6982065 | Msa0487890:intron | 45.0% | |
| GATCAATCAACTCAGCCTGA+GGG | + | chr3_4:6982064-6982083 | None:intergenic | 45.0% | |
| ! | ACGTTTCAGTGATGGCGATT+TGG | + | chr3_4:6982126-6982145 | None:intergenic | 45.0% |
| ACAACAACATCAGGAGTTCG+AGG | + | chr3_4:6982194-6982213 | None:intergenic | 45.0% | |
| GTCTCGTCAACAACAACATC+AGG | + | chr3_4:6982203-6982222 | None:intergenic | 45.0% | |
| !! | CATGTTATGGACTAGCGCAT+TGG | + | chr3_4:6982408-6982427 | None:intergenic | 45.0% |
| CCACAGCTGAAACAGTCAAT+AGG | + | chr3_4:6982537-6982556 | None:intergenic | 45.0% | |
| ! | CCTATTGACTGTTTCAGCTG+TGG | - | chr3_4:6982534-6982553 | Msa0487890:CDS | 45.0% |
| ACTGTTTCAGCTGTGGTATG+CGG | - | chr3_4:6982541-6982560 | Msa0487890:CDS | 45.0% | |
| !! | TTTAGGACTGGTTGCAAGAG+AGG | + | chr3_4:6982659-6982678 | None:intergenic | 45.0% |
| TTGCAGCAGCACTTGTGTTT+AGG | + | chr3_4:6982676-6982695 | None:intergenic | 45.0% | |
| CTCTCTCACTTCCTTGATAC+AGG | - | chr3_4:6982951-6982970 | Msa0487890:CDS | 45.0% | |
| TACGAGAATGCTTCAGCTAG+TGG | - | chr3_4:6983047-6983066 | Msa0487890:intron | 45.0% | |
| ! | TCCTTTGGAAGTGAGCATCA+AGG | - | chr3_4:6983918-6983937 | Msa0487890:CDS | 45.0% |
| TCCTTGATGCTCACTTCCAA+AGG | + | chr3_4:6983922-6983941 | None:intergenic | 45.0% | |
| AGCAACGTTGTGTGTGTAAC+TGG | - | chr3_4:6981587-6981606 | Msa0487890:CDS | 45.0% | |
| CATAGACACAAACATCGGAC+AGG | + | chr3_4:6981821-6981840 | None:intergenic | 45.0% | |
| GGGTCAAAACGTATGAAGCA+CGG | + | chr3_4:6981845-6981864 | None:intergenic | 45.0% | |
| TCCGAAGAAGATCAACCACT+TGG | - | chr3_4:6981902-6981921 | Msa0487890:intron | 45.0% | |
| CACCTTCAAGCTTAACCAAG+TGG | + | chr3_4:6981920-6981939 | None:intergenic | 45.0% | |
| !! | GGTTAAGCTTGAAGGTGCTA+AGG | - | chr3_4:6981923-6981942 | Msa0487890:intron | 45.0% |
| GCCTTTGATTCTGCTGTTCA+AGG | - | chr3_4:6981987-6982006 | Msa0487890:intron | 45.0% | |
| GCCTTGAACAGCAGAATCAA+AGG | + | chr3_4:6981991-6982010 | None:intergenic | 45.0% | |
| TCATGATGTCAAAGACCCTC+AGG | - | chr3_4:6982046-6982065 | Msa0487890:intron | 45.0% | |
| GATCAATCAACTCAGCCTGA+GGG | + | chr3_4:6982064-6982083 | None:intergenic | 45.0% | |
| ! | ACGTTTCAGTGATGGCGATT+TGG | + | chr3_4:6982126-6982145 | None:intergenic | 45.0% |
| ACAACAACATCAGGAGTTCG+AGG | + | chr3_4:6982194-6982213 | None:intergenic | 45.0% | |
| GTCTCGTCAACAACAACATC+AGG | + | chr3_4:6982203-6982222 | None:intergenic | 45.0% | |
| !! | CATGTTATGGACTAGCGCAT+TGG | + | chr3_4:6982408-6982427 | None:intergenic | 45.0% |
| CCACAGCTGAAACAGTCAAT+AGG | + | chr3_4:6982537-6982556 | None:intergenic | 45.0% | |
| ! | CCTATTGACTGTTTCAGCTG+TGG | - | chr3_4:6982534-6982553 | Msa0487890:CDS | 45.0% |
| ACTGTTTCAGCTGTGGTATG+CGG | - | chr3_4:6982541-6982560 | Msa0487890:CDS | 45.0% | |
| !! | TTTAGGACTGGTTGCAAGAG+AGG | + | chr3_4:6982659-6982678 | None:intergenic | 45.0% |
| TTGCAGCAGCACTTGTGTTT+AGG | + | chr3_4:6982676-6982695 | None:intergenic | 45.0% | |
| CTCTCTCACTTCCTTGATAC+AGG | - | chr3_4:6982951-6982970 | Msa0487890:CDS | 45.0% | |
| TACGAGAATGCTTCAGCTAG+TGG | - | chr3_4:6983047-6983066 | Msa0487890:intron | 45.0% | |
| ! | TCCTTTGGAAGTGAGCATCA+AGG | - | chr3_4:6983918-6983937 | Msa0487890:CDS | 45.0% |
| TCCTTGATGCTCACTTCCAA+AGG | + | chr3_4:6983922-6983941 | None:intergenic | 45.0% | |
| GTTCGTTTCCTTCTCCATCG+TGG | - | chr3_4:6981638-6981657 | Msa0487890:CDS | 50.0% | |
| CAGTGTAACCACGATGGAGA+AGG | + | chr3_4:6981649-6981668 | None:intergenic | 50.0% | |
| TGACTTACTTGGGTCGCGAA+CGG | + | chr3_4:6981681-6981700 | None:intergenic | 50.0% | |
| TCTGCTGTTCAAGGCTGTCA+AGG | - | chr3_4:6981996-6982015 | Msa0487890:intron | 50.0% | |
| GGATCAATCAACTCAGCCTG+AGG | + | chr3_4:6982065-6982084 | None:intergenic | 50.0% | |
| !! | TTGAGAGTACCGTTGAGTGC+AGG | + | chr3_4:6982086-6982105 | None:intergenic | 50.0% |
| ! | CATTGGCTGAAGAAGCTGCA+TGG | - | chr3_4:6982573-6982592 | Msa0487890:CDS | 50.0% |
| ! | GCAGCACTTGTGTTTAGGAC+TGG | + | chr3_4:6982671-6982690 | None:intergenic | 50.0% |
| ! | TCTCTGGGAGTTGCAACGAA+GGG | + | chr3_4:6983139-6983158 | None:intergenic | 50.0% |
| ! | TTCTCTGGGAGTTGCAACGA+AGG | + | chr3_4:6983140-6983159 | None:intergenic | 50.0% |
| GTTCGTTTCCTTCTCCATCG+TGG | - | chr3_4:6981638-6981657 | Msa0487890:CDS | 50.0% | |
| CAGTGTAACCACGATGGAGA+AGG | + | chr3_4:6981649-6981668 | None:intergenic | 50.0% | |
| TGACTTACTTGGGTCGCGAA+CGG | + | chr3_4:6981681-6981700 | None:intergenic | 50.0% | |
| TCTGCTGTTCAAGGCTGTCA+AGG | - | chr3_4:6981996-6982015 | Msa0487890:intron | 50.0% | |
| GGATCAATCAACTCAGCCTG+AGG | + | chr3_4:6982065-6982084 | None:intergenic | 50.0% | |
| !! | TTGAGAGTACCGTTGAGTGC+AGG | + | chr3_4:6982086-6982105 | None:intergenic | 50.0% |
| ! | CATTGGCTGAAGAAGCTGCA+TGG | - | chr3_4:6982573-6982592 | Msa0487890:CDS | 50.0% |
| ! | GCAGCACTTGTGTTTAGGAC+TGG | + | chr3_4:6982671-6982690 | None:intergenic | 50.0% |
| ! | TCTCTGGGAGTTGCAACGAA+GGG | + | chr3_4:6983139-6983158 | None:intergenic | 50.0% |
| ! | TTCTCTGGGAGTTGCAACGA+AGG | + | chr3_4:6983140-6983159 | None:intergenic | 50.0% |
| GTGTGTGTAACTGGCGCTTC+AGG | - | chr3_4:6981596-6981615 | Msa0487890:CDS | 55.0% | |
| GGCACACACTTTGCCGACAT+TGG | + | chr3_4:6982449-6982468 | None:intergenic | 55.0% | |
| GAGGCCCTATGACCATTGCT+GGG | + | chr3_4:6982640-6982659 | None:intergenic | 55.0% | |
| AGAGGCCCTATGACCATTGC+TGG | + | chr3_4:6982641-6982660 | None:intergenic | 55.0% | |
| GTGTGTGTAACTGGCGCTTC+AGG | - | chr3_4:6981596-6981615 | Msa0487890:CDS | 55.0% | |
| GGCACACACTTTGCCGACAT+TGG | + | chr3_4:6982449-6982468 | None:intergenic | 55.0% | |
| GAGGCCCTATGACCATTGCT+GGG | + | chr3_4:6982640-6982659 | None:intergenic | 55.0% | |
| AGAGGCCCTATGACCATTGC+TGG | + | chr3_4:6982641-6982660 | None:intergenic | 55.0% | |
| CTTACTTGGGTCGCGAACGG+TGG | + | chr3_4:6981678-6981697 | None:intergenic | 60.0% | |
| CGCAACAGCAGCAGCAGAAG+AGG | + | chr3_4:6982159-6982178 | None:intergenic | 60.0% | |
| TGGCTTATCGTCCGCACACC+TGG | + | chr3_4:6983839-6983858 | None:intergenic | 60.0% | |
| CTTACTTGGGTCGCGAACGG+TGG | + | chr3_4:6981678-6981697 | None:intergenic | 60.0% | |
| CGCAACAGCAGCAGCAGAAG+AGG | + | chr3_4:6982159-6982178 | None:intergenic | 60.0% | |
| TGGCTTATCGTCCGCACACC+TGG | + | chr3_4:6983839-6983858 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 6981581 | 6983984 | 6981581 | ID=Msa0487890;Name=Msa0487890 |
| chr3_4 | mRNA | 6981581 | 6983984 | 6981581 | ID=Msa0487890-mRNA-1;Parent=Msa0487890;Name=Msa0487890-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|5|0|322 |
| chr3_4 | exon | 6983873 | 6983984 | 6983873 | ID=Msa0487890-mRNA-1:exon:2434;Parent=Msa0487890-mRNA-1 |
| chr3_4 | exon | 6983306 | 6983667 | 6983306 | ID=Msa0487890-mRNA-1:exon:2433;Parent=Msa0487890-mRNA-1 |
| chr3_4 | exon | 6982852 | 6983014 | 6982852 | ID=Msa0487890-mRNA-1:exon:2432;Parent=Msa0487890-mRNA-1 |
| chr3_4 | exon | 6982406 | 6982592 | 6982406 | ID=Msa0487890-mRNA-1:exon:2431;Parent=Msa0487890-mRNA-1 |
| chr3_4 | exon | 6981581 | 6981725 | 6981581 | ID=Msa0487890-mRNA-1:exon:2430;Parent=Msa0487890-mRNA-1 |
| chr3_4 | CDS | 6983873 | 6983984 | 6983873 | ID=Msa0487890-mRNA-1:cds;Parent=Msa0487890-mRNA-1 |
| chr3_4 | CDS | 6983306 | 6983667 | 6983306 | ID=Msa0487890-mRNA-1:cds;Parent=Msa0487890-mRNA-1 |
| chr3_4 | CDS | 6982852 | 6983014 | 6982852 | ID=Msa0487890-mRNA-1:cds;Parent=Msa0487890-mRNA-1 |
| chr3_4 | CDS | 6982406 | 6982592 | 6982406 | ID=Msa0487890-mRNA-1:cds;Parent=Msa0487890-mRNA-1 |
| chr3_4 | CDS | 6981581 | 6981725 | 6981581 | ID=Msa0487890-mRNA-1:cds;Parent=Msa0487890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
