Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470000 | XP_003598007.1 | 98.428 | 318 | 5 | 0 | 1 | 318 | 1 | 318 | 0.0 | 644 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470000 | sp|A0A0B6VQ48|PAR1_ROSHC | 76.025 | 317 | 76 | 0 | 1 | 317 | 1 | 317 | 0.0 | 525 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470000 | G7IYC6 | 98.428 | 318 | 5 | 0 | 1 | 318 | 1 | 318 | 0.0 | 644 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0143280 | Msa0470000 | 0.802269 | 6.078062e-49 | -8.615850e-47 |
| Msa0163960 | Msa0470000 | 0.802321 | 5.929534e-49 | -8.615850e-47 |
| Msa0184510 | Msa0470000 | 0.809010 | 2.337571e-50 | -8.615850e-47 |
| Msa0387970 | Msa0470000 | 0.802154 | 6.418418e-49 | -8.615850e-47 |
| Msa0392090 | Msa0470000 | 0.947265 | 9.403374e-106 | -8.615850e-47 |
| Msa0470000 | Msa0470040 | 0.969879 | 8.938471e-131 | -8.615850e-47 |
| Msa0470000 | Msa0487890 | 0.930025 | 2.980925e-93 | -8.615850e-47 |
| Msa0470000 | Msa0548210 | 0.800046 | 1.731497e-48 | -8.615850e-47 |
| Msa0470000 | Msa0561420 | 0.802238 | 6.169445e-49 | -8.615850e-47 |
| Msa0470000 | Msa0608780 | 0.800662 | 1.297391e-48 | -8.615850e-47 |
| Msa0470000 | Msa0615430 | 0.803563 | 3.284806e-49 | -8.615850e-47 |
| Msa0470000 | Msa0649250 | 0.809760 | 1.613278e-50 | -8.615850e-47 |
| Msa0470000 | Msa0698480 | 0.803384 | 3.577509e-49 | -8.615850e-47 |
| Msa0470000 | Msa0698650 | 0.810930 | 9.020594e-51 | -8.615850e-47 |
| Msa0470000 | Msa0803530 | 0.809985 | 1.443494e-50 | -8.615850e-47 |
| Msa0470000 | Msa0950570 | 0.810638 | 1.043552e-50 | -8.615850e-47 |
| Msa0470000 | Msa1225650 | 0.801327 | 9.487959e-49 | -8.615850e-47 |
| Msa0470000 | Msa1323260 | 0.806501 | 7.978532e-50 | -8.615850e-47 |
| Msa0470000 | Msa1343450 | 0.804318 | 2.287960e-49 | -8.615850e-47 |
| Msa0470000 | Msa1406020 | 0.802873 | 4.562262e-49 | -8.615850e-47 |
| Msa0470000 | Msa1413190 | 0.813648 | 2.300958e-51 | -8.615850e-47 |
| Msa0470000 | Msa1429510 | 0.817476 | 3.233515e-52 | -8.615850e-47 |
| Msa0470000 | Msa1456620 | 0.811769 | 5.931326e-51 | -8.615850e-47 |
| Msa0344610 | Msa0470000 | 0.959587 | 1.319088e-117 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470000 | MtrunA17_Chr3g0077231 | 98.428 | 318 | 5 | 0 | 1 | 318 | 1 | 318 | 0.0 | 644 |
| Msa0470000 | MtrunA17_Chr3g0077221 | 91.536 | 319 | 27 | 0 | 4 | 322 | 8 | 326 | 0.0 | 605 |
| Msa0470000 | MtrunA17_Chr8g0364051 | 71.656 | 314 | 88 | 1 | 5 | 318 | 7 | 319 | 1.45e-167 | 473 |
| Msa0470000 | MtrunA17_Chr8g0363831 | 69.745 | 314 | 94 | 1 | 5 | 318 | 8 | 320 | 5.48e-163 | 461 |
| Msa0470000 | MtrunA17_Chr4g0039311 | 66.879 | 314 | 104 | 0 | 5 | 318 | 10 | 323 | 1.93e-161 | 457 |
| Msa0470000 | MtrunA17_Chr4g0039321 | 65.732 | 321 | 107 | 1 | 1 | 318 | 1 | 321 | 1.60e-158 | 450 |
| Msa0470000 | MtrunA17_Chr5g0431311 | 48.428 | 318 | 158 | 5 | 3 | 317 | 2 | 316 | 5.41e-95 | 288 |
| Msa0470000 | MtrunA17_Chr4g0001321 | 49.211 | 317 | 152 | 6 | 3 | 317 | 14 | 323 | 4.69e-94 | 286 |
| Msa0470000 | MtrunA17_Chr2g0333781 | 47.335 | 319 | 159 | 6 | 1 | 317 | 15 | 326 | 1.57e-89 | 275 |
| Msa0470000 | MtrunA17_Chr3g0106111 | 43.396 | 318 | 174 | 5 | 3 | 317 | 2 | 316 | 2.02e-86 | 266 |
| Msa0470000 | MtrunA17_Chr2g0331211 | 43.987 | 316 | 169 | 6 | 6 | 317 | 5 | 316 | 1.05e-85 | 265 |
| Msa0470000 | MtrunA17_Chr1g0155411 | 42.056 | 321 | 177 | 5 | 3 | 317 | 5 | 322 | 2.55e-85 | 264 |
| Msa0470000 | MtrunA17_Chr5g0423551 | 41.956 | 317 | 173 | 7 | 7 | 317 | 5 | 316 | 2.26e-84 | 261 |
| Msa0470000 | MtrunA17_Chr1g0155431 | 39.938 | 323 | 181 | 6 | 3 | 317 | 5 | 322 | 3.98e-78 | 245 |
| Msa0470000 | MtrunA17_Chr4g0002661 | 42.767 | 318 | 172 | 7 | 2 | 316 | 9 | 319 | 2.24e-77 | 243 |
| Msa0470000 | MtrunA17_Chr2g0291541 | 40.498 | 321 | 177 | 9 | 5 | 317 | 9 | 323 | 3.40e-68 | 220 |
| Msa0470000 | MtrunA17_Chr4g0002961 | 42.767 | 318 | 172 | 7 | 2 | 316 | 9 | 319 | 7.49e-68 | 219 |
| Msa0470000 | MtrunA17_Chr4g0048961 | 39.130 | 322 | 180 | 7 | 7 | 315 | 15 | 333 | 1.28e-63 | 208 |
| Msa0470000 | MtrunA17_Chr7g0245671 | 37.461 | 323 | 187 | 6 | 6 | 317 | 8 | 326 | 9.28e-62 | 203 |
| Msa0470000 | MtrunA17_Chr7g0245741 | 35.185 | 324 | 190 | 7 | 6 | 317 | 8 | 323 | 4.93e-60 | 198 |
| Msa0470000 | MtrunA17_Chr4g0042101 | 38.532 | 327 | 172 | 11 | 7 | 311 | 25 | 344 | 7.22e-58 | 194 |
| Msa0470000 | MtrunA17_Chr7g0245691 | 35.692 | 325 | 191 | 8 | 6 | 317 | 8 | 327 | 1.14e-56 | 190 |
| Msa0470000 | MtrunA17_Chr7g0245731 | 35.202 | 321 | 194 | 8 | 6 | 317 | 58 | 373 | 1.58e-56 | 191 |
| Msa0470000 | MtrunA17_Chr7g0245641 | 36.025 | 322 | 191 | 7 | 6 | 316 | 45 | 362 | 5.05e-56 | 189 |
| Msa0470000 | MtrunA17_Chr3g0080551 | 80.180 | 111 | 21 | 1 | 102 | 211 | 18 | 128 | 1.36e-53 | 175 |
| Msa0470000 | MtrunA17_Chr7g0245631 | 36.765 | 272 | 164 | 4 | 6 | 272 | 8 | 276 | 1.05e-52 | 179 |
| Msa0470000 | MtrunA17_Chr4g0010991 | 35.000 | 280 | 168 | 5 | 2 | 272 | 4 | 278 | 4.68e-45 | 159 |
| Msa0470000 | MtrunA17_Chr4g0039331 | 44.324 | 185 | 50 | 5 | 89 | 272 | 2 | 134 | 1.23e-41 | 144 |
| Msa0470000 | MtrunA17_Chr7g0245711 | 32.632 | 285 | 179 | 7 | 41 | 317 | 6 | 285 | 3.02e-41 | 148 |
| Msa0470000 | MtrunA17_Chr5g0411071 | 28.758 | 306 | 196 | 8 | 1 | 300 | 7 | 296 | 2.14e-35 | 132 |
| Msa0470000 | MtrunA17_Chr2g0282001 | 32.423 | 293 | 171 | 6 | 6 | 275 | 7 | 295 | 8.32e-34 | 129 |
| Msa0470000 | MtrunA17_Chr6g0450211 | 29.967 | 307 | 187 | 11 | 5 | 296 | 54 | 347 | 3.51e-33 | 128 |
| Msa0470000 | MtrunA17_Chr2g0281991 | 31.142 | 289 | 180 | 5 | 6 | 275 | 8 | 296 | 2.26e-31 | 122 |
| Msa0470000 | MtrunA17_Chr2g0282011 | 31.741 | 293 | 173 | 6 | 6 | 275 | 8 | 296 | 6.29e-30 | 119 |
| Msa0470000 | MtrunA17_Chr7g0275521 | 32.323 | 297 | 173 | 9 | 6 | 278 | 7 | 299 | 9.46e-30 | 118 |
| Msa0470000 | MtrunA17_Chr1g0202161 | 91.071 | 56 | 5 | 0 | 104 | 159 | 43 | 98 | 1.26e-26 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470000 | AT5G19440.1 | 76.038 | 313 | 75 | 0 | 5 | 317 | 9 | 321 | 1.95e-179 | 504 |
| Msa0470000 | AT1G51410.1 | 74.121 | 313 | 81 | 0 | 5 | 317 | 8 | 320 | 5.75e-179 | 502 |
| Msa0470000 | AT1G09510.1 | 54.459 | 314 | 143 | 0 | 4 | 317 | 6 | 319 | 3.24e-119 | 350 |
| Msa0470000 | AT1G09480.2 | 52.716 | 313 | 148 | 0 | 5 | 317 | 7 | 319 | 2.95e-114 | 338 |
| Msa0470000 | AT1G09480.1 | 52.716 | 313 | 148 | 0 | 5 | 317 | 54 | 366 | 1.28e-113 | 338 |
| Msa0470000 | AT1G66800.1 | 54.633 | 313 | 138 | 1 | 5 | 317 | 7 | 315 | 2.65e-113 | 335 |
| Msa0470000 | AT1G09490.1 | 52.077 | 313 | 150 | 0 | 5 | 317 | 7 | 319 | 1.65e-112 | 333 |
| Msa0470000 | AT1G09500.1 | 52.848 | 316 | 146 | 3 | 5 | 317 | 7 | 322 | 1.81e-110 | 328 |
| Msa0470000 | AT1G09500.3 | 54.412 | 272 | 123 | 1 | 5 | 275 | 7 | 278 | 7.10e-102 | 305 |
| Msa0470000 | AT4G35420.1 | 47.771 | 314 | 159 | 4 | 6 | 317 | 8 | 318 | 3.93e-98 | 297 |
| Msa0470000 | AT1G15950.3 | 48.734 | 316 | 153 | 6 | 4 | 317 | 11 | 319 | 3.55e-90 | 277 |
| Msa0470000 | AT1G15950.1 | 48.734 | 316 | 153 | 6 | 4 | 317 | 11 | 319 | 3.55e-90 | 277 |
| Msa0470000 | AT1G09490.2 | 48.387 | 279 | 144 | 0 | 39 | 317 | 10 | 288 | 6.96e-90 | 275 |
| Msa0470000 | AT5G58490.1 | 46.372 | 317 | 164 | 5 | 4 | 317 | 7 | 320 | 1.67e-89 | 275 |
| Msa0470000 | AT1G09500.2 | 49.648 | 284 | 140 | 3 | 37 | 317 | 5 | 288 | 1.02e-88 | 271 |
| Msa0470000 | AT1G15950.2 | 48.377 | 308 | 150 | 6 | 5 | 310 | 12 | 312 | 2.88e-86 | 267 |
| Msa0470000 | AT1G80820.1 | 46.395 | 319 | 162 | 7 | 1 | 317 | 3 | 314 | 2.05e-85 | 265 |
| Msa0470000 | AT2G02400.1 | 40.810 | 321 | 180 | 7 | 1 | 317 | 1 | 315 | 7.63e-79 | 247 |
| Msa0470000 | AT1G15950.6 | 49.635 | 274 | 130 | 5 | 3 | 275 | 10 | 276 | 5.30e-78 | 243 |
| Msa0470000 | AT1G15950.4 | 48.936 | 282 | 135 | 6 | 3 | 283 | 10 | 283 | 9.25e-78 | 243 |
| Msa0470000 | AT1G15950.5 | 49.632 | 272 | 129 | 5 | 3 | 273 | 10 | 274 | 2.24e-77 | 242 |
| Msa0470000 | AT1G68540.1 | 41.216 | 296 | 164 | 5 | 8 | 297 | 6 | 297 | 9.64e-77 | 242 |
| Msa0470000 | AT5G42800.1 | 40.125 | 319 | 182 | 5 | 5 | 317 | 7 | 322 | 2.15e-72 | 233 |
| Msa0470000 | AT1G80820.2 | 47.101 | 276 | 138 | 6 | 1 | 275 | 3 | 271 | 2.85e-72 | 229 |
| Msa0470000 | AT2G33590.1 | 41.456 | 316 | 176 | 6 | 6 | 318 | 9 | 318 | 1.81e-67 | 218 |
| Msa0470000 | AT1G25460.1 | 38.125 | 320 | 184 | 5 | 8 | 325 | 6 | 313 | 2.97e-66 | 214 |
| Msa0470000 | AT1G76470.1 | 42.236 | 322 | 171 | 9 | 6 | 319 | 7 | 321 | 1.18e-63 | 208 |
| Msa0470000 | AT2G33600.1 | 41.640 | 317 | 174 | 7 | 6 | 318 | 9 | 318 | 1.50e-63 | 207 |
| Msa0470000 | AT1G61720.1 | 36.196 | 326 | 190 | 6 | 3 | 316 | 10 | 329 | 6.29e-59 | 196 |
| Msa0470000 | AT4G27250.2 | 35.093 | 322 | 188 | 9 | 7 | 313 | 14 | 329 | 3.85e-51 | 176 |
| Msa0470000 | AT4G27250.1 | 34.743 | 331 | 187 | 10 | 7 | 313 | 14 | 339 | 8.12e-51 | 176 |
| Msa0470000 | AT1G15950.7 | 44.395 | 223 | 120 | 4 | 97 | 317 | 1 | 221 | 1.02e-50 | 172 |
| Msa0470000 | AT2G45400.1 | 32.792 | 308 | 198 | 3 | 2 | 300 | 36 | 343 | 2.17e-47 | 167 |
| Msa0470000 | AT2G45400.2 | 34.164 | 281 | 176 | 3 | 2 | 273 | 36 | 316 | 4.14e-47 | 165 |
| Msa0470000 | AT2G23910.2 | 30.515 | 272 | 178 | 6 | 7 | 275 | 11 | 274 | 1.11e-41 | 149 |
| Msa0470000 | AT2G23910.3 | 30.741 | 270 | 176 | 6 | 7 | 273 | 11 | 272 | 1.15e-41 | 149 |
| Msa0470000 | AT2G23910.1 | 30.515 | 272 | 178 | 6 | 7 | 275 | 11 | 274 | 2.04e-41 | 149 |
| Msa0470000 | AT4G30470.1 | 31.047 | 277 | 179 | 6 | 2 | 275 | 6 | 273 | 2.36e-40 | 146 |
| Msa0470000 | AT1G68540.2 | 38.220 | 191 | 115 | 3 | 109 | 297 | 1 | 190 | 5.52e-40 | 142 |
| Msa0470000 | AT2G45400.4 | 36.364 | 220 | 133 | 2 | 2 | 214 | 36 | 255 | 6.96e-40 | 144 |
| Msa0470000 | AT2G45400.3 | 29.740 | 269 | 182 | 2 | 39 | 300 | 18 | 286 | 6.56e-32 | 124 |
| Msa0470000 | AT2G23910.4 | 30.000 | 230 | 150 | 6 | 49 | 275 | 19 | 240 | 1.66e-31 | 121 |
| Msa0470000 | AT5G14700.1 | 25.850 | 294 | 187 | 9 | 3 | 278 | 52 | 332 | 2.79e-26 | 109 |
| Msa0470000 | AT5G14700.2 | 27.556 | 225 | 138 | 6 | 3 | 213 | 52 | 265 | 5.34e-22 | 95.9 |
Find 95 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTTCTGGAGGGCATGTTT+TGG | 0.222664 | 3_3:+72073441 | Msa0470000:CDS |
| GCTAGTTTGCTGTTGGCTTC+TGG | 0.222844 | 3_3:+72073427 | Msa0470000:CDS |
| CTAGGGAGATACGTTTAATT+TGG | 0.229039 | 3_3:-72071287 | None:intergenic |
| ACCCATCCCAAAGTAGAATT+TGG | 0.245483 | 3_3:-72072018 | None:intergenic |
| CATTCTCGTACGCCAGAATA+TGG | 0.258064 | 3_3:-72072065 | None:intergenic |
| GCAATTCTAAACCTGATTAA+TGG | 0.275531 | 3_3:+72071730 | Msa0470000:CDS |
| CAAAGAAAAGGCGACGAGTT+TGG | 0.281165 | 3_3:+72072913 | Msa0470000:CDS |
| CTTCCCCTTTGTTGCGAGTC+TGG | 0.282289 | 3_3:+72073603 | Msa0470000:CDS |
| TTTGTTGCGAGTCTGGTTGC+TGG | 0.285935 | 3_3:+72073610 | Msa0470000:CDS |
| AATTATTAATCTTACTTCTC+TGG | 0.299337 | 3_3:-72072183 | None:intergenic |
| TAAAGAAAACAACATTGATA+TGG | 0.308617 | 3_3:+72071642 | Msa0470000:CDS |
| AACATTTCCAAATTCTACTT+TGG | 0.318580 | 3_3:+72072011 | Msa0470000:CDS |
| TTGCAGCAGCACTTGTGTTT+AGG | 0.321177 | 3_3:-72071711 | None:intergenic |
| TGTTGCAAATGCCCATATTC+TGG | 0.323215 | 3_3:+72072053 | Msa0470000:CDS |
| AAAGAAAAGGCGACGAGTTT+GGG | 0.324489 | 3_3:+72072914 | Msa0470000:CDS |
| GTAATTAATTACCATTAATC+AGG | 0.328588 | 3_3:-72071741 | None:intergenic |
| CAAGGCAAATCTACTTGAAC+AGG | 0.339055 | 3_3:+72071000 | Msa0470000:CDS |
| GCCTTTGATTCTGCTGTTCA+AGG | 0.346135 | 3_3:+72071025 | Msa0470000:CDS |
| GTCTTTGACATCATGATAGA+AGG | 0.357010 | 3_3:-72071077 | None:intergenic |
| ATTAACCCAGCAATGGTCAT+AGG | 0.359026 | 3_3:+72071670 | Msa0470000:CDS |
| AACTGATATGTAGGCACATA+TGG | 0.371044 | 3_3:-72072887 | None:intergenic |
| AGCTAGTGGAAGACATTGTT+TGG | 0.373238 | 3_3:+72072092 | Msa0470000:CDS |
| AGCAACGTTGTGTGTGTAAC+TGG | 0.375079 | 3_3:+72070625 | Msa0470000:CDS |
| ACCAAGTGGTTGATCTTCTT+CGG | 0.375522 | 3_3:-72070941 | None:intergenic |
| ACATTTCCAAATTCTACTTT+GGG | 0.382077 | 3_3:+72072012 | Msa0470000:CDS |
| GGGATGCGGCACTTCATTGT+TGG | 0.403087 | 3_3:+72073335 | Msa0470000:intron |
| AGAGGCCCTATGACCATTGC+TGG | 0.404733 | 3_3:-72071676 | None:intergenic |
| GGATGCGGCACTTCATTGTT+GGG | 0.409566 | 3_3:+72073336 | Msa0470000:CDS |
| ATTATTAATCTTACTTCTCT+GGG | 0.410205 | 3_3:-72072182 | None:intergenic |
| GGGAATTGAATATACTCCTT+TGG | 0.411555 | 3_3:+72072934 | Msa0470000:CDS |
| ACGTTTCAGTGATGGCGATT+TGG | 0.412461 | 3_3:-72071161 | None:intergenic |
| GTGTGTGTAACTGGCGCTTC+AGG | 0.413471 | 3_3:+72070634 | Msa0470000:CDS |
| AAGTGCTGGCAGCCGCTTTG+AGG | 0.416822 | 3_3:+72073513 | Msa0470000:CDS |
| AACCACTTGGTTAAGCTTGA+AGG | 0.417225 | 3_3:+72070953 | Msa0470000:CDS |
| CTTCAGGTTACATAGCTTCA+TGG | 0.422476 | 3_3:+72070650 | Msa0470000:CDS |
| TCTTTGGAAAACTGATATGT+AGG | 0.433529 | 3_3:-72072896 | None:intergenic |
| GGCACTTCATTGTTGGGTTG+CGG | 0.439505 | 3_3:+72073342 | Msa0470000:CDS |
| GTTGTTTCTGTGGTAAGTGC+TGG | 0.448507 | 3_3:+72073499 | Msa0470000:CDS |
| TCCAAATTCTACTTTGGGAT+GGG | 0.448702 | 3_3:+72072017 | Msa0470000:CDS |
| GGAGAGATTACAATTATTCA+AGG | 0.452632 | 3_3:+72070982 | Msa0470000:CDS |
| GCAACCAGACTCGCAACAAA+GGG | 0.467024 | 3_3:-72073607 | None:intergenic |
| ATGAAGAGCAGCAGCTGCAC+AGG | 0.468374 | 3_3:-72073386 | None:intergenic |
| GTCTGGTTGCTGGGCAGCAA+GGG | 0.469827 | 3_3:+72073620 | Msa0470000:CDS |
| CGCAACAGCAGCAGCAGAAG+AGG | 0.476034 | 3_3:-72071194 | None:intergenic |
| TTCCAAATTCTACTTTGGGA+TGG | 0.486039 | 3_3:+72072016 | Msa0470000:CDS |
| CAACACAATCCGAGCAATAG+AGG | 0.489521 | 3_3:-72073644 | None:intergenic |
| GTCTCGTCAACAACAACATC+AGG | 0.489728 | 3_3:-72071238 | None:intergenic |
| CTGTCAGCTTGTTGTTTCTG+TGG | 0.495910 | 3_3:+72073489 | Msa0470000:CDS |
| GGATTGTGTTGTTTCAGCCT+CGG | 0.497116 | 3_3:+72073656 | Msa0470000:CDS |
| TCCTTGATGCTCACTTCCAA+AGG | 0.501654 | 3_3:-72072950 | None:intergenic |
| ATTCTCGTACGCCAGAATAT+GGG | 0.502026 | 3_3:-72072064 | None:intergenic |
| TTGTTGCGAGTCTGGTTGCT+GGG | 0.503921 | 3_3:+72073611 | Msa0470000:CDS |
| AGTTTGCTGTTGGCTTCTGG+AGG | 0.509079 | 3_3:+72073430 | Msa0470000:CDS |
| ATTTGTCCATTGCAGGGATG+CGG | 0.510757 | 3_3:+72073321 | Msa0470000:intron |
| AGTCTGGTTGCTGGGCAGCA+AGG | 0.512445 | 3_3:+72073619 | Msa0470000:CDS |
| TTTAGGACTGGTTGCAAGAG+AGG | 0.512693 | 3_3:-72071694 | None:intergenic |
| TCATGATGTCAAAGACCCTC+AGG | 0.517650 | 3_3:+72071084 | Msa0470000:CDS |
| GCAGCACTTGTGTTTAGGAC+TGG | 0.518349 | 3_3:-72071706 | None:intergenic |
| AGCAACCAGACTCGCAACAA+AGG | 0.522931 | 3_3:-72073608 | None:intergenic |
| GTTGGGTTGCGGCTTTCTTG+TGG | 0.523452 | 3_3:+72073353 | Msa0470000:CDS |
| AGCAAGGGTCCTCTATTGCT+CGG | 0.526418 | 3_3:+72073635 | Msa0470000:CDS |
| TACGAGAATGCTTCAGCTAG+TGG | 0.527796 | 3_3:+72072078 | Msa0470000:CDS |
| TCTGCTGTTCAAGGCTGTCA+AGG | 0.530516 | 3_3:+72071034 | Msa0470000:CDS |
| GTTTGCTGTTGGCTTCTGGA+GGG | 0.530891 | 3_3:+72073431 | Msa0470000:CDS |
| GGTTAAGCTTGAAGGTGCTA+AGG | 0.535332 | 3_3:+72070961 | Msa0470000:CDS |
| ATGTTGTTGTTGACGAGACT+TGG | 0.540828 | 3_3:+72071242 | Msa0470000:CDS |
| TTAACCCAGCAATGGTCATA+GGG | 0.542832 | 3_3:+72071671 | Msa0470000:CDS |
| GCCTTGAACAGCAGAATCAA+AGG | 0.555036 | 3_3:-72071026 | None:intergenic |
| AAGACAACACGTTTCAGTGA+TGG | 0.558880 | 3_3:-72071169 | None:intergenic |
| TTGAGAGTACCGTTGAGTGC+AGG | 0.577644 | 3_3:-72071121 | None:intergenic |
| CACCTTCAAGCTTAACCAAG+TGG | 0.579342 | 3_3:-72070955 | None:intergenic |
| CATTGGCTGAAGAAGCTGCA+TGG | 0.580278 | 3_3:+72071611 | Msa0470000:CDS |
| TGACTTACTTGGGTCGCGAA+CGG | 0.581536 | 3_3:-72070716 | None:intergenic |
| CAGTGTAACCACGATGGAGA+AGG | 0.586371 | 3_3:-72070684 | None:intergenic |
| CAGACTCGCAACAAAGGGGA+AGG | 0.586491 | 3_3:-72073602 | None:intergenic |
| CTTACTTGGGTCGCGAACGG+TGG | 0.590707 | 3_3:-72070713 | None:intergenic |
| TCTTTGACATCATGATAGAA+GGG | 0.593847 | 3_3:-72071076 | None:intergenic |
| TTCTCTGGGAGTTGCAACGA+AGG | 0.598543 | 3_3:-72072168 | None:intergenic |
| TCCTTTGGAAGTGAGCATCA+AGG | 0.611448 | 3_3:+72072949 | Msa0470000:CDS |
| GGATCAATCAACTCAGCCTG+AGG | 0.624561 | 3_3:-72071100 | None:intergenic |
| TCCGAAGAAGATCAACCACT+TGG | 0.626562 | 3_3:+72070940 | Msa0470000:CDS |
| ACAACAACATCAGGAGTTCG+AGG | 0.628925 | 3_3:-72071229 | None:intergenic |
| GAGGCCCTATGACCATTGCT+GGG | 0.631385 | 3_3:-72071675 | None:intergenic |
| GATCAATCAACTCAGCCTGA+GGG | 0.632249 | 3_3:-72071099 | None:intergenic |
| GGTTACTATTAACCCAGCAA+TGG | 0.635018 | 3_3:+72071663 | Msa0470000:CDS |
| TTGATTGATCCTGCACTCAA+CGG | 0.644648 | 3_3:+72071112 | Msa0470000:CDS |
| GTTCGTTTCCTTCTCCATCG+TGG | 0.644846 | 3_3:+72070676 | Msa0470000:CDS |
| AGACTCGCAACAAAGGGGAA+GGG | 0.645475 | 3_3:-72073601 | None:intergenic |
| ACTGTTTCAGCTGTGGTATG+CGG | 0.647792 | 3_3:+72071579 | Msa0470000:intron |
| TCTCTGGGAGTTGCAACGAA+GGG | 0.653512 | 3_3:-72072167 | None:intergenic |
| CAACCAGACTCGCAACAAAG+GGG | 0.664458 | 3_3:-72073606 | None:intergenic |
| TATATATGTTACCAGGTGTG+CGG | 0.694634 | 3_3:+72072856 | Msa0470000:intron |
| CTTTAACAGTGTAACCACGA+TGG | 0.707935 | 3_3:-72070690 | None:intergenic |
| GTATGCGGTTTCGAAAACAT+TGG | 0.716031 | 3_3:+72071594 | Msa0470000:CDS |
| AAGGCAAATCTACTTGAACA+GGG | 0.722044 | 3_3:+72071001 | Msa0470000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTATTTATAATAGTTTTA+CGG | + | chr3_3:72073223-72073242 | Msa0470000:intron | 10.0% |
| !! | TAATAATCAAATCAAACATA+GGG | - | chr3_3:72070903-72070922 | None:intergenic | 15.0% |
| !! | ATAATAATCAAATCAAACAT+AGG | - | chr3_3:72070904-72070923 | None:intergenic | 15.0% |
| !!! | TATGTTTGATTTGATTATTA+TGG | + | chr3_3:72070903-72070922 | Msa0470000:intron | 15.0% |
| !! | ATTTATTACATGATTAATCA+TGG | - | chr3_3:72071519-72071538 | None:intergenic | 15.0% |
| !! | TATTTAATACATACAGAAAA+AGG | + | chr3_3:72072365-72072384 | Msa0470000:intron | 15.0% |
| !!! | AATTAAGTGTTTCTAAAATA+AGG | + | chr3_3:72072658-72072677 | Msa0470000:intron | 15.0% |
| !! | TATAAATGTAAATACAGAAA+TGG | - | chr3_3:72072782-72072801 | None:intergenic | 15.0% |
| !! | TATTAAATGTTTAATGAGTA+AGG | + | chr3_3:72073252-72073271 | Msa0470000:intron | 15.0% |
| !! | TAAAGAAAACAACATTGATA+TGG | + | chr3_3:72071642-72071661 | Msa0470000:CDS | 20.0% |
| !! | GTAATTAATTACCATTAATC+AGG | - | chr3_3:72071744-72071763 | None:intergenic | 20.0% |
| !! | CCATTACAATAAAACAAAAA+TGG | - | chr3_3:72071766-72071785 | None:intergenic | 20.0% |
| !!! | CCATTTTTGTTTTATTGTAA+TGG | + | chr3_3:72071763-72071782 | Msa0470000:intron | 20.0% |
| !! | TAAAATTCAATAAGCAACAA+TGG | - | chr3_3:72071867-72071886 | None:intergenic | 20.0% |
| !! | ATTATTAATCTTACTTCTCT+GGG | - | chr3_3:72072185-72072204 | None:intergenic | 20.0% |
| !! | AATTATTAATCTTACTTCTC+TGG | - | chr3_3:72072186-72072205 | None:intergenic | 20.0% |
| !! | GAAAAATTTCAACAATTTAG+AGG | + | chr3_3:72072407-72072426 | Msa0470000:intron | 20.0% |
| !!! | TGCACTTTTTAACATATATT+CGG | + | chr3_3:72072458-72072477 | Msa0470000:intron | 20.0% |
| !! | TGATTTTGTAAGTTTAGCTA+GGG | - | chr3_3:72071307-72071326 | None:intergenic | 25.0% |
| ! | TCATATCAAACGAAAATAAC+AGG | - | chr3_3:72071824-72071843 | None:intergenic | 25.0% |
| ! | AACATTTCCAAATTCTACTT+TGG | + | chr3_3:72072011-72072030 | Msa0470000:CDS | 25.0% |
| ! | ACATTTCCAAATTCTACTTT+GGG | + | chr3_3:72072012-72072031 | Msa0470000:CDS | 25.0% |
| ! | ATTATGTTCCTAAATGAATG+CGG | + | chr3_3:72072230-72072249 | Msa0470000:intron | 25.0% |
| ! | AATTCAGTGCTAAAAATGAA+AGG | + | chr3_3:72072307-72072326 | Msa0470000:intron | 25.0% |
| ! | ATGTATTAAATAAACAACCC+TGG | - | chr3_3:72072357-72072376 | None:intergenic | 25.0% |
| !! | GAAACCATGTTTTACATATT+GGG | - | chr3_3:72072492-72072511 | None:intergenic | 25.0% |
| !! | TGAAACCATGTTTTACATAT+TGG | - | chr3_3:72072493-72072512 | None:intergenic | 25.0% |
| ! | TACAGAAGACATAAAAATAG+AGG | - | chr3_3:72072571-72072590 | None:intergenic | 25.0% |
| ! | ACGAAAAATTCAGTACAAAT+TGG | - | chr3_3:72072616-72072635 | None:intergenic | 25.0% |
| !! | ACATTTAAAGTTGCTATACT+TGG | - | chr3_3:72072684-72072703 | None:intergenic | 25.0% |
| ! | AAGTATAGCAACTTTAAATG+TGG | + | chr3_3:72072683-72072702 | Msa0470000:intron | 25.0% |
| ! | GGATATTAAACAACATTTGT+AGG | - | chr3_3:72072714-72072733 | None:intergenic | 25.0% |
| ! | TGTTTAATATCCGAAATCAT+AGG | + | chr3_3:72072722-72072741 | Msa0470000:intron | 25.0% |
| ! | TAACCATTAACCTATGATTT+CGG | - | chr3_3:72072735-72072754 | None:intergenic | 25.0% |
| !! | ATATCAGTTTTCCAAAGAAA+AGG | + | chr3_3:72072901-72072920 | Msa0470000:CDS | 25.0% |
| GGAGAGATTACAATTATTCA+AGG | + | chr3_3:72070982-72071001 | Msa0470000:CDS | 30.0% | |
| TCTTTGACATCATGATAGAA+GGG | - | chr3_3:72071079-72071098 | None:intergenic | 30.0% | |
| ! | GTGATTTTGTAAGTTTAGCT+AGG | - | chr3_3:72071308-72071327 | None:intergenic | 30.0% |
| ! | AGCAAGGACTAAATTGTTTT+TGG | + | chr3_3:72071385-72071404 | Msa0470000:intron | 30.0% |
| TACATGATTAATCATGGCAT+TGG | - | chr3_3:72071513-72071532 | None:intergenic | 30.0% | |
| GCAATTCTAAACCTGATTAA+TGG | + | chr3_3:72071730-72071749 | Msa0470000:CDS | 30.0% | |
| AATAAGCAACAATGGATGTT+GGG | - | chr3_3:72071859-72071878 | None:intergenic | 30.0% | |
| CAATTATGTTTGTGTTCAAG+AGG | + | chr3_3:72071930-72071949 | Msa0470000:intron | 30.0% | |
| ATAAGAATCCGCATTCATTT+AGG | - | chr3_3:72072241-72072260 | None:intergenic | 30.0% | |
| TCATCACTAATATTTGATCC+AGG | + | chr3_3:72072336-72072355 | Msa0470000:intron | 30.0% | |
| CATCACTAATATTTGATCCA+GGG | + | chr3_3:72072337-72072356 | Msa0470000:intron | 30.0% | |
| TTTAACATATATTCGGCTTC+TGG | + | chr3_3:72072465-72072484 | Msa0470000:intron | 30.0% | |
| GAAGACATAAAAATAGAGGA+AGG | - | chr3_3:72072567-72072586 | None:intergenic | 30.0% | |
| TATCCGAAATCATAGGTTAA+TGG | + | chr3_3:72072729-72072748 | Msa0470000:intron | 30.0% | |
| TGTCAACTATATATGTTACC+AGG | + | chr3_3:72072849-72072868 | Msa0470000:intron | 30.0% | |
| ! | TCTTTGGAAAACTGATATGT+AGG | - | chr3_3:72072899-72072918 | None:intergenic | 30.0% |
| TATGAAAGGGAAAAAGAAAG+TGG | + | chr3_3:72073135-72073154 | Msa0470000:intron | 30.0% | |
| !!! | TCATTTTTGCTTGCTGTTTT+TGG | + | chr3_3:72073405-72073424 | Msa0470000:CDS | 30.0% |
| GAGAAGAGAATGACTTACTT+GGG | - | chr3_3:72070729-72070748 | None:intergenic | 35.0% | |
| AGAGAAGAGAATGACTTACT+TGG | - | chr3_3:72070730-72070749 | None:intergenic | 35.0% | |
| AAGGCAAATCTACTTGAACA+GGG | + | chr3_3:72071001-72071020 | Msa0470000:CDS | 35.0% | |
| GTCTTTGACATCATGATAGA+AGG | - | chr3_3:72071080-72071099 | None:intergenic | 35.0% | |
| CTAGGGAGATACGTTTAATT+TGG | - | chr3_3:72071290-72071309 | None:intergenic | 35.0% | |
| !! | CCTTGCTATTGAAGATGTTA+TGG | - | chr3_3:72071372-72071391 | None:intergenic | 35.0% |
| CCATAACATCTTCAATAGCA+AGG | + | chr3_3:72071369-72071388 | Msa0470000:intron | 35.0% | |
| AACCATTAGCTAGCATGTTA+TGG | - | chr3_3:72071459-72071478 | None:intergenic | 35.0% | |
| ATAAGCAACAATGGATGTTG+GGG | - | chr3_3:72071858-72071877 | None:intergenic | 35.0% | |
| CAATAAGCAACAATGGATGT+TGG | - | chr3_3:72071860-72071879 | None:intergenic | 35.0% | |
| ATGTTTGTGTACCTGTATCA+AGG | - | chr3_3:72071996-72072015 | None:intergenic | 35.0% | |
| ! | TTCCAAATTCTACTTTGGGA+TGG | + | chr3_3:72072016-72072035 | Msa0470000:CDS | 35.0% |
| !! | TCCAAATTCTACTTTGGGAT+GGG | + | chr3_3:72072017-72072036 | Msa0470000:CDS | 35.0% |
| AATGAATGCGGATTCTTATC+TGG | + | chr3_3:72072242-72072261 | Msa0470000:intron | 35.0% | |
| CACTGAATTGAGTTTCAAAC+AGG | - | chr3_3:72072296-72072315 | None:intergenic | 35.0% | |
| TGGACCCAATATGTAAAACA+TGG | + | chr3_3:72072485-72072504 | Msa0470000:intron | 35.0% | |
| ! | TTTCACAGATGTTTTGCTAC+TGG | + | chr3_3:72072508-72072527 | Msa0470000:intron | 35.0% |
| ! | TTCACAGATGTTTTGCTACT+GGG | + | chr3_3:72072509-72072528 | Msa0470000:intron | 35.0% |
| TATATATGTTACCAGGTGTG+CGG | + | chr3_3:72072856-72072875 | Msa0470000:intron | 35.0% | |
| AACTGATATGTAGGCACATA+TGG | - | chr3_3:72072890-72072909 | None:intergenic | 35.0% | |
| GGGAATTGAATATACTCCTT+TGG | + | chr3_3:72072934-72072953 | Msa0470000:CDS | 35.0% | |
| !! | TCCTTGTTTAGTTGATGACA+TGG | + | chr3_3:72073027-72073046 | Msa0470000:intron | 35.0% |
| CTAAGTTTCTTCACAAGCAT+AGG | - | chr3_3:72073062-72073081 | None:intergenic | 35.0% | |
| !! | CAAGCTTATCTTTTGGAGAA+GGG | - | chr3_3:72073107-72073126 | None:intergenic | 35.0% |
| !! | TAATGAGTAAGGACTAGCTT+AGG | + | chr3_3:72073263-72073282 | Msa0470000:intron | 35.0% |
| TCAATCTATTTGTCCATTGC+AGG | + | chr3_3:72073314-72073333 | Msa0470000:intron | 35.0% | |
| CAATCTATTTGTCCATTGCA+GGG | + | chr3_3:72073315-72073334 | Msa0470000:intron | 35.0% | |
| !!! | CATGTTTTGGGAGGTTTTTT+CGG | + | chr3_3:72073454-72073473 | Msa0470000:CDS | 35.0% |
| ! | CTTCAGGTTACATAGCTTCA+TGG | + | chr3_3:72070650-72070669 | Msa0470000:CDS | 40.0% |
| CTTTAACAGTGTAACCACGA+TGG | - | chr3_3:72070693-72070712 | None:intergenic | 40.0% | |
| ACGGACATAGACACAAACAT+CGG | - | chr3_3:72070864-72070883 | None:intergenic | 40.0% | |
| ATCTTCTTCGGATCATCTAC+AGG | - | chr3_3:72070932-72070951 | None:intergenic | 40.0% | |
| ACCAAGTGGTTGATCTTCTT+CGG | - | chr3_3:72070944-72070963 | None:intergenic | 40.0% | |
| AACCACTTGGTTAAGCTTGA+AGG | + | chr3_3:72070953-72070972 | Msa0470000:CDS | 40.0% | |
| CAAGGCAAATCTACTTGAAC+AGG | + | chr3_3:72071000-72071019 | Msa0470000:CDS | 40.0% | |
| TTGATTGATCCTGCACTCAA+CGG | + | chr3_3:72071112-72071131 | Msa0470000:CDS | 40.0% | |
| AAGACAACACGTTTCAGTGA+TGG | - | chr3_3:72071172-72071191 | None:intergenic | 40.0% | |
| ! | ATGTTGTTGTTGACGAGACT+TGG | + | chr3_3:72071242-72071261 | Msa0470000:CDS | 40.0% |
| GTCCATAACATGCTAGCTAA+TGG | + | chr3_3:72071454-72071473 | Msa0470000:intron | 40.0% | |
| !! | GATTAATCATGGCATTGGCA+TGG | - | chr3_3:72071508-72071527 | None:intergenic | 40.0% |
| GTATGCGGTTTCGAAAACAT+TGG | + | chr3_3:72071594-72071613 | Msa0470000:CDS | 40.0% | |
| GGTTACTATTAACCCAGCAA+TGG | + | chr3_3:72071663-72071682 | Msa0470000:CDS | 40.0% | |
| ATTAACCCAGCAATGGTCAT+AGG | + | chr3_3:72071670-72071689 | Msa0470000:CDS | 40.0% | |
| TTAACCCAGCAATGGTCATA+GGG | + | chr3_3:72071671-72071690 | Msa0470000:CDS | 40.0% | |
| AGAGAGCTATTATCTGCAGA+AGG | - | chr3_3:72071968-72071987 | None:intergenic | 40.0% | |
| ACCCATCCCAAAGTAGAATT+TGG | - | chr3_3:72072021-72072040 | None:intergenic | 40.0% | |
| TGTTGCAAATGCCCATATTC+TGG | + | chr3_3:72072053-72072072 | Msa0470000:CDS | 40.0% | |
| ATTCTCGTACGCCAGAATAT+GGG | - | chr3_3:72072067-72072086 | None:intergenic | 40.0% | |
| AGCTAGTGGAAGACATTGTT+TGG | + | chr3_3:72072092-72072111 | Msa0470000:CDS | 40.0% | |
| TTGCTACTGGGTAACTTGAA+TGG | + | chr3_3:72072521-72072540 | Msa0470000:intron | 40.0% | |
| AAAGAAAAGGCGACGAGTTT+GGG | + | chr3_3:72072914-72072933 | Msa0470000:CDS | 40.0% | |
| GCCATGTCATCAACTAAACA+AGG | - | chr3_3:72073031-72073050 | None:intergenic | 40.0% | |
| !! | CCAAGCTTATCTTTTGGAGA+AGG | - | chr3_3:72073108-72073127 | None:intergenic | 40.0% |
| CCTTCTCCAAAAGATAAGCT+TGG | + | chr3_3:72073105-72073124 | Msa0470000:intron | 40.0% | |
| !!! | GTTTTTGGCTAGTTTGCTGT+TGG | + | chr3_3:72073420-72073439 | Msa0470000:CDS | 40.0% |
| CCAAAAAGAAAGCCTCAAAG+CGG | - | chr3_3:72073528-72073547 | None:intergenic | 40.0% | |
| AGCAACGTTGTGTGTGTAAC+TGG | + | chr3_3:72070625-72070644 | Msa0470000:CDS | 45.0% | |
| CATAGACACAAACATCGGAC+AGG | - | chr3_3:72070859-72070878 | None:intergenic | 45.0% | |
| GGGTCAAAACGTATGAAGCA+CGG | - | chr3_3:72070883-72070902 | None:intergenic | 45.0% | |
| TCCGAAGAAGATCAACCACT+TGG | + | chr3_3:72070940-72070959 | Msa0470000:CDS | 45.0% | |
| CACCTTCAAGCTTAACCAAG+TGG | - | chr3_3:72070958-72070977 | None:intergenic | 45.0% | |
| !! | GGTTAAGCTTGAAGGTGCTA+AGG | + | chr3_3:72070961-72070980 | Msa0470000:CDS | 45.0% |
| GCCTTTGATTCTGCTGTTCA+AGG | + | chr3_3:72071025-72071044 | Msa0470000:CDS | 45.0% | |
| GCCTTGAACAGCAGAATCAA+AGG | - | chr3_3:72071029-72071048 | None:intergenic | 45.0% | |
| TCATGATGTCAAAGACCCTC+AGG | + | chr3_3:72071084-72071103 | Msa0470000:CDS | 45.0% | |
| GATCAATCAACTCAGCCTGA+GGG | - | chr3_3:72071102-72071121 | None:intergenic | 45.0% | |
| ! | ACGTTTCAGTGATGGCGATT+TGG | - | chr3_3:72071164-72071183 | None:intergenic | 45.0% |
| ACAACAACATCAGGAGTTCG+AGG | - | chr3_3:72071232-72071251 | None:intergenic | 45.0% | |
| GTCTCGTCAACAACAACATC+AGG | - | chr3_3:72071241-72071260 | None:intergenic | 45.0% | |
| !! | CATGTTATGGACTAGCGCAT+TGG | - | chr3_3:72071446-72071465 | None:intergenic | 45.0% |
| CCACAGCTGAAACAGTCAAT+AGG | - | chr3_3:72071575-72071594 | None:intergenic | 45.0% | |
| ! | CCTATTGACTGTTTCAGCTG+TGG | + | chr3_3:72071572-72071591 | Msa0470000:intron | 45.0% |
| ACTGTTTCAGCTGTGGTATG+CGG | + | chr3_3:72071579-72071598 | Msa0470000:intron | 45.0% | |
| !! | TTTAGGACTGGTTGCAAGAG+AGG | - | chr3_3:72071697-72071716 | None:intergenic | 45.0% |
| TTGCAGCAGCACTTGTGTTT+AGG | - | chr3_3:72071714-72071733 | None:intergenic | 45.0% | |
| CTCTCTCACTTCCTTGATAC+AGG | + | chr3_3:72071982-72072001 | Msa0470000:intron | 45.0% | |
| CATTCTCGTACGCCAGAATA+TGG | - | chr3_3:72072068-72072087 | None:intergenic | 45.0% | |
| TACGAGAATGCTTCAGCTAG+TGG | + | chr3_3:72072078-72072097 | Msa0470000:CDS | 45.0% | |
| ! | CAAACTCGTCGCCTTTTCTT+TGG | - | chr3_3:72072915-72072934 | None:intergenic | 45.0% |
| CAAAGAAAAGGCGACGAGTT+TGG | + | chr3_3:72072913-72072932 | Msa0470000:CDS | 45.0% | |
| ! | TCCTTTGGAAGTGAGCATCA+AGG | + | chr3_3:72072949-72072968 | Msa0470000:CDS | 45.0% |
| TCCTTGATGCTCACTTCCAA+AGG | - | chr3_3:72072953-72072972 | None:intergenic | 45.0% | |
| ! | CACACGCCAAGCTTATCTTT+TGG | - | chr3_3:72073114-72073133 | None:intergenic | 45.0% |
| AGCTTGGCGTGTGATATGAA+AGG | + | chr3_3:72073121-72073140 | Msa0470000:intron | 45.0% | |
| GCTTGGCGTGTGATATGAAA+GGG | + | chr3_3:72073122-72073141 | Msa0470000:intron | 45.0% | |
| ATTTGTCCATTGCAGGGATG+CGG | + | chr3_3:72073321-72073340 | Msa0470000:intron | 45.0% | |
| !!! | GTTTTGGGAGGTTTTTTCGG+CGG | + | chr3_3:72073457-72073476 | Msa0470000:CDS | 45.0% |
| !! | CTGTCAGCTTGTTGTTTCTG+TGG | + | chr3_3:72073489-72073508 | Msa0470000:CDS | 45.0% |
| !! | GTTGTTTCTGTGGTAAGTGC+TGG | + | chr3_3:72073499-72073518 | Msa0470000:CDS | 45.0% |
| !!! | CCGCTTTGAGGCTTTCTTTT+TGG | + | chr3_3:72073525-72073544 | Msa0470000:CDS | 45.0% |
| !!! | AGGCTTTCTTTTTGGCTGCT+GGG | + | chr3_3:72073533-72073552 | Msa0470000:CDS | 45.0% |
| !!! | TTTCTTTTTGGCTGCTGGGA+GGG | + | chr3_3:72073537-72073556 | Msa0470000:CDS | 45.0% |
| !!! | GCTGTCTTGCTTTTTTCAGC+TGG | + | chr3_3:72073570-72073589 | Msa0470000:CDS | 45.0% |
| !!! | GTCTTGCTTTTTTCAGCTGG+TGG | + | chr3_3:72073573-72073592 | Msa0470000:CDS | 45.0% |
| CAACACAATCCGAGCAATAG+AGG | - | chr3_3:72073647-72073666 | None:intergenic | 45.0% | |
| !! | GGATTGTGTTGTTTCAGCCT+CGG | + | chr3_3:72073656-72073675 | Msa0470000:CDS | 45.0% |
| GTTCGTTTCCTTCTCCATCG+TGG | + | chr3_3:72070676-72070695 | Msa0470000:CDS | 50.0% | |
| CAGTGTAACCACGATGGAGA+AGG | - | chr3_3:72070687-72070706 | None:intergenic | 50.0% | |
| TGACTTACTTGGGTCGCGAA+CGG | - | chr3_3:72070719-72070738 | None:intergenic | 50.0% | |
| TCTGCTGTTCAAGGCTGTCA+AGG | + | chr3_3:72071034-72071053 | Msa0470000:CDS | 50.0% | |
| GGATCAATCAACTCAGCCTG+AGG | - | chr3_3:72071103-72071122 | None:intergenic | 50.0% | |
| !! | TTGAGAGTACCGTTGAGTGC+AGG | - | chr3_3:72071124-72071143 | None:intergenic | 50.0% |
| TTGGCATGGCACACACTTTG+CGG | - | chr3_3:72071494-72071513 | None:intergenic | 50.0% | |
| ! | CATTGGCTGAAGAAGCTGCA+TGG | + | chr3_3:72071611-72071630 | Msa0470000:CDS | 50.0% |
| ! | GCAGCACTTGTGTTTAGGAC+TGG | - | chr3_3:72071709-72071728 | None:intergenic | 50.0% |
| ! | TCTCTGGGAGTTGCAACGAA+GGG | - | chr3_3:72072170-72072189 | None:intergenic | 50.0% |
| ! | TTCTCTGGGAGTTGCAACGA+AGG | - | chr3_3:72072171-72072190 | None:intergenic | 50.0% |
| GGATGCGGCACTTCATTGTT+GGG | + | chr3_3:72073336-72073355 | Msa0470000:CDS | 50.0% | |
| ! | GGCACTTCATTGTTGGGTTG+CGG | + | chr3_3:72073342-72073361 | Msa0470000:CDS | 50.0% |
| !! | GCTAGTTTGCTGTTGGCTTC+TGG | + | chr3_3:72073427-72073446 | Msa0470000:CDS | 50.0% |
| !! | AGTTTGCTGTTGGCTTCTGG+AGG | + | chr3_3:72073430-72073449 | Msa0470000:CDS | 50.0% |
| !! | GTTTGCTGTTGGCTTCTGGA+GGG | + | chr3_3:72073431-72073450 | Msa0470000:CDS | 50.0% |
| !! | GCTTCTGGAGGGCATGTTTT+GGG | + | chr3_3:72073442-72073461 | Msa0470000:CDS | 50.0% |
| !!! | GAGGTTTTTTCGGCGGTCTT+TGG | + | chr3_3:72073464-72073483 | Msa0470000:CDS | 50.0% |
| !!! | GAGGCTTTCTTTTTGGCTGC+TGG | + | chr3_3:72073532-72073551 | Msa0470000:CDS | 50.0% |
| !!! | CTTTCTTTTTGGCTGCTGGG+AGG | + | chr3_3:72073536-72073555 | Msa0470000:CDS | 50.0% |
| AGACTCGCAACAAAGGGGAA+GGG | - | chr3_3:72073604-72073623 | None:intergenic | 50.0% | |
| CAACCAGACTCGCAACAAAG+GGG | - | chr3_3:72073609-72073628 | None:intergenic | 50.0% | |
| GCAACCAGACTCGCAACAAA+GGG | - | chr3_3:72073610-72073629 | None:intergenic | 50.0% | |
| AGCAACCAGACTCGCAACAA+AGG | - | chr3_3:72073611-72073630 | None:intergenic | 50.0% | |
| TTTGTTGCGAGTCTGGTTGC+TGG | + | chr3_3:72073610-72073629 | Msa0470000:CDS | 50.0% | |
| TTGTTGCGAGTCTGGTTGCT+GGG | + | chr3_3:72073611-72073630 | Msa0470000:CDS | 50.0% | |
| AGCAAGGGTCCTCTATTGCT+CGG | + | chr3_3:72073635-72073654 | Msa0470000:CDS | 50.0% | |
| GTGTGTGTAACTGGCGCTTC+AGG | + | chr3_3:72070634-72070653 | Msa0470000:CDS | 55.0% | |
| GGCACACACTTTGCGGACAT+TGG | - | chr3_3:72071487-72071506 | None:intergenic | 55.0% | |
| GAGGCCCTATGACCATTGCT+GGG | - | chr3_3:72071678-72071697 | None:intergenic | 55.0% | |
| AGAGGCCCTATGACCATTGC+TGG | - | chr3_3:72071679-72071698 | None:intergenic | 55.0% | |
| GGGATGCGGCACTTCATTGT+TGG | + | chr3_3:72073335-72073354 | Msa0470000:intron | 55.0% | |
| ! | GTTGGGTTGCGGCTTTCTTG+TGG | + | chr3_3:72073353-72073372 | Msa0470000:CDS | 55.0% |
| ATGAAGAGCAGCAGCTGCAC+AGG | - | chr3_3:72073389-72073408 | None:intergenic | 55.0% | |
| !! | GGCTTCTGGAGGGCATGTTT+TGG | + | chr3_3:72073441-72073460 | Msa0470000:CDS | 55.0% |
| !! | TCTGGAGGGCATGTTTTGGG+AGG | + | chr3_3:72073445-72073464 | Msa0470000:CDS | 55.0% |
| CAGACTCGCAACAAAGGGGA+AGG | - | chr3_3:72073605-72073624 | None:intergenic | 55.0% | |
| CTTCCCCTTTGTTGCGAGTC+TGG | + | chr3_3:72073603-72073622 | Msa0470000:CDS | 55.0% | |
| CTTACTTGGGTCGCGAACGG+TGG | - | chr3_3:72070716-72070735 | None:intergenic | 60.0% | |
| CGCAACAGCAGCAGCAGAAG+AGG | - | chr3_3:72071197-72071216 | None:intergenic | 60.0% | |
| TGGCTTATCGTCCGCACACC+TGG | - | chr3_3:72072870-72072889 | None:intergenic | 60.0% | |
| !! | GAAGTGCCGCATCCCTGCAA+TGG | - | chr3_3:72073330-72073349 | None:intergenic | 60.0% |
| !! | AAGTGCTGGCAGCCGCTTTG+AGG | + | chr3_3:72073513-72073532 | Msa0470000:CDS | 60.0% |
| AGTCTGGTTGCTGGGCAGCA+AGG | + | chr3_3:72073619-72073638 | Msa0470000:CDS | 60.0% | |
| GTCTGGTTGCTGGGCAGCAA+GGG | + | chr3_3:72073620-72073639 | Msa0470000:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 72070619 | 72073687 | 72070619 | ID=Msa0470000;Name=Msa0470000 |
| chr3_3 | mRNA | 72070619 | 72073687 | 72070619 | ID=Msa0470000-mRNA-1;Parent=Msa0470000;Name=Msa0470000-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|0.83|1|1|6|0|434 |
| chr3_3 | exon | 72070619 | 72070730 | 72070619 | ID=Msa0470000-mRNA-1:exon:17794;Parent=Msa0470000-mRNA-1 |
| chr3_3 | exon | 72070936 | 72071297 | 72070936 | ID=Msa0470000-mRNA-1:exon:17795;Parent=Msa0470000-mRNA-1 |
| chr3_3 | exon | 72071589 | 72071751 | 72071589 | ID=Msa0470000-mRNA-1:exon:17796;Parent=Msa0470000-mRNA-1 |
| chr3_3 | exon | 72072004 | 72072190 | 72072004 | ID=Msa0470000-mRNA-1:exon:17797;Parent=Msa0470000-mRNA-1 |
| chr3_3 | exon | 72072871 | 72072999 | 72072871 | ID=Msa0470000-mRNA-1:exon:17798;Parent=Msa0470000-mRNA-1 |
| chr3_3 | exon | 72073336 | 72073687 | 72073336 | ID=Msa0470000-mRNA-1:exon:17799;Parent=Msa0470000-mRNA-1 |
| chr3_3 | CDS | 72070619 | 72070730 | 72070619 | ID=Msa0470000-mRNA-1:cds;Parent=Msa0470000-mRNA-1 |
| chr3_3 | CDS | 72070936 | 72071297 | 72070936 | ID=Msa0470000-mRNA-1:cds;Parent=Msa0470000-mRNA-1 |
| chr3_3 | CDS | 72071589 | 72071751 | 72071589 | ID=Msa0470000-mRNA-1:cds;Parent=Msa0470000-mRNA-1 |
| chr3_3 | CDS | 72072004 | 72072190 | 72072004 | ID=Msa0470000-mRNA-1:cds;Parent=Msa0470000-mRNA-1 |
| chr3_3 | CDS | 72072871 | 72072999 | 72072871 | ID=Msa0470000-mRNA-1:cds;Parent=Msa0470000-mRNA-1 |
| chr3_3 | CDS | 72073336 | 72073687 | 72073336 | ID=Msa0470000-mRNA-1:cds;Parent=Msa0470000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
