Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344610 | XP_003598007.1 | 98.447 | 322 | 5 | 0 | 1 | 322 | 1 | 322 | 0.0 | 655 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344610 | sp|A0A0B6VQ48|PAR1_ROSHC | 75.466 | 322 | 79 | 0 | 1 | 322 | 1 | 322 | 0.0 | 529 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344610 | G7IYC6 | 98.447 | 322 | 5 | 0 | 1 | 322 | 1 | 322 | 0.0 | 655 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0143280 | Msa0344610 | 0.812207 | 4.760517e-51 | -8.615850e-47 |
| Msa0163960 | Msa0344610 | 0.810516 | 1.108699e-50 | -8.615850e-47 |
| Msa0344610 | Msa0387970 | 0.808480 | 3.034258e-50 | -8.615850e-47 |
| Msa0344610 | Msa0392090 | 0.970095 | 4.243233e-131 | -8.615850e-47 |
| Msa0344610 | Msa0470000 | 0.959587 | 1.319088e-117 | -8.615850e-47 |
| Msa0344610 | Msa0470040 | 0.974166 | 1.116067e-137 | -8.615850e-47 |
| Msa0344610 | Msa0487890 | 0.942509 | 6.336837e-102 | -8.615850e-47 |
| Msa0344610 | Msa0561420 | 0.803453 | 3.461219e-49 | -8.615850e-47 |
| Msa0344610 | Msa0698650 | 0.809362 | 1.964860e-50 | -8.615850e-47 |
| Msa0344610 | Msa0749150 | 0.809912 | 1.496743e-50 | -8.615850e-47 |
| Msa0344610 | Msa0803530 | 0.807430 | 5.075319e-50 | -8.615850e-47 |
| Msa0344610 | Msa0828900 | 0.801510 | 8.704884e-49 | -8.615850e-47 |
| Msa0344610 | Msa0950470 | 0.810086 | 1.373073e-50 | -8.615850e-47 |
| Msa0344610 | Msa0950570 | 0.815073 | 1.114515e-51 | -8.615850e-47 |
| Msa0344610 | Msa1125450 | 0.805228 | 1.477552e-49 | -8.615850e-47 |
| Msa0344610 | Msa1164570 | 0.805180 | 1.512039e-49 | -8.615850e-47 |
| Msa0344610 | Msa1386250 | 0.808704 | 2.717887e-50 | -8.615850e-47 |
| Msa0344610 | Msa1406020 | 0.808036 | 3.772909e-50 | -8.615850e-47 |
| Msa0344610 | Msa1413190 | 0.810184 | 1.307580e-50 | -8.615850e-47 |
| Msa0344610 | Msa1429510 | 0.810313 | 1.226388e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344610 | MtrunA17_Chr3g0077231 | 98.447 | 322 | 5 | 0 | 1 | 322 | 1 | 322 | 0.0 | 655 |
| Msa0344610 | MtrunA17_Chr3g0077221 | 91.250 | 320 | 28 | 0 | 3 | 322 | 7 | 326 | 0.0 | 609 |
| Msa0344610 | MtrunA17_Chr8g0364051 | 71.384 | 318 | 90 | 1 | 5 | 322 | 7 | 323 | 2.49e-172 | 480 |
| Msa0344610 | MtrunA17_Chr8g0363831 | 69.811 | 318 | 95 | 1 | 5 | 322 | 8 | 324 | 2.05e-168 | 471 |
| Msa0344610 | MtrunA17_Chr4g0039311 | 66.981 | 318 | 105 | 0 | 5 | 322 | 10 | 327 | 9.23e-167 | 466 |
| Msa0344610 | MtrunA17_Chr4g0039321 | 65.846 | 325 | 108 | 1 | 1 | 322 | 1 | 325 | 4.97e-164 | 459 |
| Msa0344610 | MtrunA17_Chr5g0431311 | 47.826 | 322 | 162 | 5 | 3 | 321 | 2 | 320 | 1.13e-97 | 291 |
| Msa0344610 | MtrunA17_Chr4g0001321 | 49.682 | 314 | 149 | 6 | 6 | 317 | 17 | 323 | 3.70e-96 | 288 |
| Msa0344610 | MtrunA17_Chr2g0333781 | 46.605 | 324 | 164 | 6 | 1 | 322 | 15 | 331 | 8.72e-92 | 277 |
| Msa0344610 | MtrunA17_Chr3g0106111 | 43.302 | 321 | 176 | 5 | 3 | 320 | 2 | 319 | 2.98e-89 | 270 |
| Msa0344610 | MtrunA17_Chr2g0331211 | 43.987 | 316 | 169 | 6 | 6 | 317 | 5 | 316 | 3.66e-88 | 267 |
| Msa0344610 | MtrunA17_Chr1g0155411 | 42.056 | 321 | 177 | 5 | 3 | 317 | 5 | 322 | 9.30e-88 | 266 |
| Msa0344610 | MtrunA17_Chr5g0423551 | 41.824 | 318 | 178 | 6 | 7 | 320 | 5 | 319 | 1.95e-87 | 265 |
| Msa0344610 | MtrunA17_Chr1g0155431 | 39.571 | 326 | 184 | 6 | 3 | 320 | 5 | 325 | 1.99e-80 | 247 |
| Msa0344610 | MtrunA17_Chr4g0002661 | 42.767 | 318 | 172 | 7 | 2 | 316 | 9 | 319 | 3.57e-79 | 244 |
| Msa0344610 | MtrunA17_Chr2g0291541 | 40.615 | 325 | 179 | 9 | 5 | 321 | 9 | 327 | 1.49e-71 | 224 |
| Msa0344610 | MtrunA17_Chr4g0002961 | 42.767 | 318 | 172 | 7 | 2 | 316 | 9 | 319 | 1.68e-69 | 219 |
| Msa0344610 | MtrunA17_Chr4g0048961 | 38.820 | 322 | 181 | 7 | 7 | 315 | 15 | 333 | 9.66e-66 | 210 |
| Msa0344610 | MtrunA17_Chr7g0245671 | 37.117 | 326 | 190 | 6 | 6 | 320 | 8 | 329 | 3.97e-64 | 205 |
| Msa0344610 | MtrunA17_Chr7g0245741 | 35.168 | 327 | 192 | 8 | 6 | 320 | 8 | 326 | 1.65e-62 | 201 |
| Msa0344610 | MtrunA17_Chr4g0042101 | 38.532 | 327 | 172 | 11 | 7 | 311 | 25 | 344 | 6.89e-60 | 195 |
| Msa0344610 | MtrunA17_Chr7g0245691 | 35.671 | 328 | 193 | 9 | 6 | 320 | 8 | 330 | 5.26e-59 | 192 |
| Msa0344610 | MtrunA17_Chr7g0245731 | 34.877 | 324 | 197 | 8 | 6 | 320 | 58 | 376 | 1.06e-58 | 193 |
| Msa0344610 | MtrunA17_Chr7g0245641 | 35.890 | 326 | 194 | 8 | 6 | 320 | 45 | 366 | 4.26e-58 | 191 |
| Msa0344610 | MtrunA17_Chr3g0080551 | 77.586 | 116 | 25 | 1 | 97 | 211 | 13 | 128 | 3.26e-55 | 176 |
| Msa0344610 | MtrunA17_Chr7g0245631 | 36.765 | 272 | 164 | 4 | 6 | 272 | 8 | 276 | 1.83e-54 | 180 |
| Msa0344610 | MtrunA17_Chr4g0010991 | 35.000 | 280 | 168 | 5 | 2 | 272 | 4 | 278 | 8.26e-47 | 160 |
| Msa0344610 | MtrunA17_Chr7g0245711 | 32.292 | 288 | 182 | 7 | 41 | 320 | 6 | 288 | 3.53e-43 | 150 |
| Msa0344610 | MtrunA17_Chr4g0039331 | 44.324 | 185 | 50 | 5 | 89 | 272 | 2 | 134 | 8.37e-43 | 145 |
| Msa0344610 | MtrunA17_Chr5g0411071 | 28.758 | 306 | 196 | 8 | 1 | 300 | 7 | 296 | 9.45e-37 | 133 |
| Msa0344610 | MtrunA17_Chr2g0282001 | 31.834 | 289 | 178 | 5 | 6 | 275 | 7 | 295 | 2.68e-35 | 130 |
| Msa0344610 | MtrunA17_Chr6g0450211 | 30.195 | 308 | 185 | 11 | 5 | 296 | 54 | 347 | 7.15e-35 | 130 |
| Msa0344610 | MtrunA17_Chr2g0281991 | 31.488 | 289 | 179 | 6 | 6 | 275 | 8 | 296 | 8.85e-33 | 124 |
| Msa0344610 | MtrunA17_Chr2g0282011 | 31.741 | 293 | 173 | 6 | 6 | 275 | 8 | 296 | 5.53e-31 | 119 |
| Msa0344610 | MtrunA17_Chr7g0275521 | 32.323 | 297 | 173 | 10 | 6 | 278 | 7 | 299 | 5.55e-31 | 119 |
| Msa0344610 | MtrunA17_Chr1g0202161 | 91.071 | 56 | 5 | 0 | 104 | 159 | 43 | 98 | 1.65e-27 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344610 | AT1G51410.1 | 73.817 | 317 | 83 | 0 | 6 | 322 | 9 | 325 | 0.0 | 509 |
| Msa0344610 | AT5G19440.1 | 75.472 | 318 | 78 | 0 | 5 | 322 | 9 | 326 | 0.0 | 509 |
| Msa0344610 | AT1G09510.1 | 53.918 | 319 | 147 | 0 | 2 | 320 | 4 | 322 | 1.15e-121 | 352 |
| Msa0344610 | AT1G09480.2 | 52.716 | 313 | 148 | 0 | 5 | 317 | 7 | 319 | 2.41e-116 | 339 |
| Msa0344610 | AT1G09480.1 | 52.215 | 316 | 151 | 0 | 2 | 317 | 51 | 366 | 5.43e-116 | 340 |
| Msa0344610 | AT1G66800.1 | 54.633 | 313 | 138 | 1 | 5 | 317 | 7 | 315 | 2.89e-115 | 336 |
| Msa0344610 | AT1G09490.1 | 52.077 | 313 | 150 | 0 | 5 | 317 | 7 | 319 | 2.25e-114 | 334 |
| Msa0344610 | AT1G09500.1 | 52.665 | 319 | 148 | 3 | 5 | 320 | 7 | 325 | 1.56e-112 | 329 |
| Msa0344610 | AT1G09500.3 | 53.818 | 275 | 126 | 1 | 2 | 275 | 4 | 278 | 1.35e-103 | 305 |
| Msa0344610 | AT4G35420.1 | 47.170 | 318 | 163 | 4 | 6 | 321 | 8 | 322 | 3.36e-101 | 300 |
| Msa0344610 | AT5G58490.1 | 46.562 | 320 | 165 | 5 | 5 | 321 | 8 | 324 | 5.12e-93 | 280 |
| Msa0344610 | AT1G15950.3 | 48.580 | 317 | 154 | 6 | 3 | 317 | 10 | 319 | 8.95e-92 | 277 |
| Msa0344610 | AT1G15950.1 | 48.580 | 317 | 154 | 6 | 3 | 317 | 10 | 319 | 8.95e-92 | 277 |
| Msa0344610 | AT1G09490.2 | 48.387 | 279 | 144 | 0 | 39 | 317 | 10 | 288 | 9.98e-92 | 275 |
| Msa0344610 | AT1G09500.2 | 49.477 | 287 | 142 | 3 | 37 | 320 | 5 | 291 | 1.02e-90 | 273 |
| Msa0344610 | AT1G15950.2 | 48.065 | 310 | 152 | 6 | 3 | 310 | 10 | 312 | 4.03e-88 | 268 |
| Msa0344610 | AT1G80820.1 | 46.395 | 319 | 162 | 7 | 1 | 317 | 3 | 314 | 1.94e-87 | 266 |
| Msa0344610 | AT2G02400.1 | 40.741 | 324 | 182 | 7 | 1 | 320 | 1 | 318 | 3.91e-82 | 251 |
| Msa0344610 | AT1G15950.6 | 49.635 | 274 | 130 | 5 | 3 | 275 | 10 | 276 | 1.11e-79 | 244 |
| Msa0344610 | AT1G15950.4 | 48.936 | 282 | 135 | 6 | 3 | 283 | 10 | 283 | 2.15e-79 | 244 |
| Msa0344610 | AT1G15950.5 | 49.632 | 272 | 129 | 5 | 3 | 273 | 10 | 274 | 5.30e-79 | 242 |
| Msa0344610 | AT1G68540.1 | 41.077 | 297 | 165 | 5 | 8 | 298 | 6 | 298 | 1.30e-78 | 243 |
| Msa0344610 | AT5G42800.1 | 40.187 | 321 | 183 | 5 | 6 | 320 | 8 | 325 | 1.54e-75 | 237 |
| Msa0344610 | AT1G80820.2 | 47.101 | 276 | 138 | 6 | 1 | 275 | 3 | 271 | 6.78e-74 | 229 |
| Msa0344610 | AT2G33590.1 | 41.379 | 319 | 178 | 6 | 6 | 321 | 9 | 321 | 1.81e-70 | 222 |
| Msa0344610 | AT1G25460.1 | 39.932 | 293 | 172 | 4 | 8 | 298 | 6 | 296 | 7.50e-68 | 215 |
| Msa0344610 | AT2G33600.1 | 42.236 | 322 | 171 | 8 | 6 | 321 | 9 | 321 | 2.30e-66 | 211 |
| Msa0344610 | AT1G76470.1 | 42.453 | 318 | 168 | 9 | 6 | 315 | 7 | 317 | 1.72e-65 | 209 |
| Msa0344610 | AT1G61720.1 | 36.196 | 326 | 190 | 6 | 3 | 316 | 10 | 329 | 5.36e-61 | 198 |
| Msa0344610 | AT4G27250.2 | 35.061 | 328 | 192 | 9 | 7 | 319 | 14 | 335 | 1.28e-53 | 179 |
| Msa0344610 | AT4G27250.1 | 35.015 | 337 | 190 | 11 | 7 | 319 | 14 | 345 | 3.16e-53 | 178 |
| Msa0344610 | AT1G15950.7 | 44.395 | 223 | 120 | 4 | 97 | 317 | 1 | 221 | 4.73e-52 | 172 |
| Msa0344610 | AT2G45400.1 | 32.899 | 307 | 197 | 3 | 3 | 300 | 37 | 343 | 1.74e-49 | 169 |
| Msa0344610 | AT2G45400.2 | 34.286 | 280 | 175 | 3 | 3 | 273 | 37 | 316 | 3.92e-49 | 167 |
| Msa0344610 | AT2G23910.2 | 30.515 | 272 | 178 | 6 | 7 | 275 | 11 | 274 | 5.78e-43 | 149 |
| Msa0344610 | AT2G23910.3 | 30.741 | 270 | 176 | 6 | 7 | 273 | 11 | 272 | 7.89e-43 | 149 |
| Msa0344610 | AT2G23910.1 | 30.741 | 270 | 176 | 6 | 7 | 273 | 11 | 272 | 1.12e-42 | 149 |
| Msa0344610 | AT4G30470.1 | 31.047 | 277 | 179 | 6 | 2 | 275 | 6 | 273 | 3.94e-42 | 148 |
| Msa0344610 | AT2G45400.4 | 36.530 | 219 | 132 | 2 | 3 | 214 | 37 | 255 | 1.18e-41 | 145 |
| Msa0344610 | AT1G68540.2 | 38.021 | 192 | 116 | 3 | 109 | 298 | 1 | 191 | 3.53e-41 | 143 |
| Msa0344610 | AT2G45400.3 | 29.630 | 270 | 183 | 2 | 38 | 300 | 17 | 286 | 3.91e-33 | 124 |
| Msa0344610 | AT2G23910.4 | 30.263 | 228 | 148 | 6 | 49 | 273 | 19 | 238 | 1.07e-32 | 122 |
| Msa0344610 | AT5G14700.1 | 25.763 | 295 | 188 | 9 | 2 | 278 | 51 | 332 | 4.69e-28 | 112 |
| Msa0344610 | AT5G14700.2 | 28.502 | 207 | 126 | 5 | 2 | 194 | 51 | 249 | 1.80e-23 | 98.2 |
| Msa0344610 | AT4G33360.2 | 24.125 | 257 | 168 | 7 | 6 | 256 | 15 | 250 | 7.50e-14 | 71.2 |
| Msa0344610 | AT4G33360.3 | 24.125 | 257 | 168 | 7 | 6 | 256 | 3 | 238 | 9.20e-14 | 71.2 |
| Msa0344610 | AT4G33360.1 | 24.125 | 257 | 168 | 7 | 6 | 256 | 15 | 250 | 1.16e-13 | 71.2 |
Find 69 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGGGAGATACGTTTAATT+TGG | 0.229039 | 3_1:+3390572 | None:intergenic |
| CAAAGAAAAGGCAACGAGTT+TGG | 0.233787 | 3_1:-3388939 | Msa0344610:CDS |
| ACCCATCCCAAAGTAGAATT+TGG | 0.245483 | 3_1:+3389834 | None:intergenic |
| CATTCTCGTATGCCAGAATA+TGG | 0.267945 | 3_1:+3389787 | None:intergenic |
| GCAATTCTAAACCTGATTAA+TGG | 0.275531 | 3_1:-3390129 | Msa0344610:intron |
| AATTATTAATCTTACTTCTC+TGG | 0.299337 | 3_1:+3389669 | None:intergenic |
| TAAAGAAAACAACATTGATA+TGG | 0.308617 | 3_1:-3390217 | Msa0344610:CDS |
| AACATTTCCAAATTCTACTT+TGG | 0.318580 | 3_1:-3389841 | Msa0344610:CDS |
| TTGCAGCAGCACTTGTGTTT+AGG | 0.321177 | 3_1:+3390148 | None:intergenic |
| TGTTGCAAATGCCCATATTC+TGG | 0.323215 | 3_1:-3389799 | Msa0344610:CDS |
| GTAATTAATTACCATTAATC+AGG | 0.328588 | 3_1:+3390118 | None:intergenic |
| AAAGAAAAGGCAACGAGTTT+GGG | 0.334596 | 3_1:-3388938 | Msa0344610:CDS |
| CAAGGCAAATCTACTTGAAC+AGG | 0.339055 | 3_1:-3390859 | Msa0344610:CDS |
| GCCTTTGATTCTGCTGTTCA+AGG | 0.346135 | 3_1:-3390834 | Msa0344610:CDS |
| GTCTTTGACATCATGATAGA+AGG | 0.357010 | 3_1:+3390782 | None:intergenic |
| ATTAACCCAGCAATGGTCAT+AGG | 0.359026 | 3_1:-3390189 | Msa0344610:CDS |
| AACTGATATGTAGGCACATA+TGG | 0.371044 | 3_1:+3388965 | None:intergenic |
| AGCTAGTGGAAGACATTGTT+TGG | 0.373238 | 3_1:-3389760 | Msa0344610:CDS |
| AGCAACGTTGTGTGTGTAAC+TGG | 0.375079 | 3_1:-3391234 | Msa0344610:CDS |
| ACCAAGTGGTTGATCTTCTT+CGG | 0.375522 | 3_1:+3390918 | None:intergenic |
| ACATTTCCAAATTCTACTTT+GGG | 0.382077 | 3_1:-3389840 | Msa0344610:CDS |
| AGAGGCCCTATGACCATTGC+TGG | 0.404733 | 3_1:+3390183 | None:intergenic |
| ATTATTAATCTTACTTCTCT+GGG | 0.410205 | 3_1:+3389670 | None:intergenic |
| GGGAATTGAATATACTCCTT+TGG | 0.411555 | 3_1:-3388918 | Msa0344610:CDS |
| ACGTTTCAGTGATGGCGATT+TGG | 0.412461 | 3_1:+3390698 | None:intergenic |
| GTGTGTGTAACTGGCGCTTC+AGG | 0.413471 | 3_1:-3391225 | Msa0344610:CDS |
| AACCACTTGGTTAAGCTTGA+AGG | 0.417225 | 3_1:-3390906 | Msa0344610:CDS |
| CTTCAGGTTACATAGCTTCA+TGG | 0.422476 | 3_1:-3391209 | Msa0344610:CDS |
| TCTTTGGAAAACTGATATGT+AGG | 0.433529 | 3_1:+3388956 | None:intergenic |
| TCCAAATTCTACTTTGGGAT+GGG | 0.448702 | 3_1:-3389835 | Msa0344610:CDS |
| GGAGAGATTACAATTATTCA+AGG | 0.452632 | 3_1:-3390877 | Msa0344610:CDS |
| CGCAACAGCAGCAGCAGAAG+AGG | 0.476034 | 3_1:+3390665 | None:intergenic |
| TTCCAAATTCTACTTTGGGA+TGG | 0.486039 | 3_1:-3389836 | Msa0344610:CDS |
| GTCTCGTCAACAACAACATC+AGG | 0.489728 | 3_1:+3390621 | None:intergenic |
| TCCTTGATGCTCACTTCCAA+AGG | 0.501654 | 3_1:+3388902 | None:intergenic |
| TTTAGGACTGGTTGCAAGAG+AGG | 0.512693 | 3_1:+3390165 | None:intergenic |
| TCATGATGTCAAAGACCCTC+AGG | 0.517650 | 3_1:-3390775 | Msa0344610:CDS |
| GCAGCACTTGTGTTTAGGAC+TGG | 0.518349 | 3_1:+3390153 | None:intergenic |
| TACGAGAATGCTTCAGCTAG+TGG | 0.518867 | 3_1:-3389774 | Msa0344610:CDS |
| TCTGCTGTTCAAGGCTGTCA+AGG | 0.530516 | 3_1:-3390825 | Msa0344610:CDS |
| GGTTAAGCTTGAAGGTGCTA+AGG | 0.535332 | 3_1:-3390898 | Msa0344610:CDS |
| ATGTTGTTGTTGACGAGACT+TGG | 0.540828 | 3_1:-3390617 | Msa0344610:CDS |
| TTAACCCAGCAATGGTCATA+GGG | 0.542832 | 3_1:-3390188 | Msa0344610:CDS |
| ATTCTCGTATGCCAGAATAT+GGG | 0.546372 | 3_1:+3389788 | None:intergenic |
| GCCTTGAACAGCAGAATCAA+AGG | 0.555036 | 3_1:+3390833 | None:intergenic |
| AAGACAACACGTTTCAGTGA+TGG | 0.558880 | 3_1:+3390690 | None:intergenic |
| TTGAGAGTACCGTTGAGTGC+AGG | 0.577644 | 3_1:+3390738 | None:intergenic |
| CACCTTCAAGCTTAACCAAG+TGG | 0.579342 | 3_1:+3390904 | None:intergenic |
| CATTGGCTGAAGAAGCTGCA+TGG | 0.580278 | 3_1:-3390248 | Msa0344610:CDS |
| TGACTTACTTGGGTCGCGAA+CGG | 0.581536 | 3_1:+3391143 | None:intergenic |
| CAGTGTAACCACGATGGAGA+AGG | 0.586371 | 3_1:+3391175 | None:intergenic |
| CTTACTTGGGTCGCGAACGG+TGG | 0.590707 | 3_1:+3391146 | None:intergenic |
| TCTTTGACATCATGATAGAA+GGG | 0.593847 | 3_1:+3390783 | None:intergenic |
| TTCTCTGGGAGTTGCAACGA+AGG | 0.598543 | 3_1:+3389684 | None:intergenic |
| TCCTTTGGAAGTGAGCATCA+AGG | 0.611448 | 3_1:-3388903 | Msa0344610:CDS |
| GGATCAATCAACTCAGCCTG+AGG | 0.624561 | 3_1:+3390759 | None:intergenic |
| TCCGAAGAAGATCAACCACT+TGG | 0.626562 | 3_1:-3390919 | Msa0344610:CDS |
| ACAACAACATCAGGAGTTCG+AGG | 0.628925 | 3_1:+3390630 | None:intergenic |
| GAGGCCCTATGACCATTGCT+GGG | 0.631385 | 3_1:+3390184 | None:intergenic |
| GATCAATCAACTCAGCCTGA+GGG | 0.632249 | 3_1:+3390760 | None:intergenic |
| GGTTACTATTAACCCAGCAA+TGG | 0.635018 | 3_1:-3390196 | Msa0344610:CDS |
| TTGATTGATCCTGCACTCAA+CGG | 0.644648 | 3_1:-3390747 | Msa0344610:CDS |
| GTTCGTTTCCTTCTCCATCG+TGG | 0.644846 | 3_1:-3391183 | Msa0344610:CDS |
| ACTGTTTCAGCTGTGGTATG+CGG | 0.647792 | 3_1:-3390280 | Msa0344610:intron |
| TCTCTGGGAGTTGCAACGAA+GGG | 0.653512 | 3_1:+3389685 | None:intergenic |
| TATATATGTTACCAGGTGTG+CGG | 0.694634 | 3_1:-3388996 | Msa0344610:intron |
| CTTTAACAGTGTAACCACGA+TGG | 0.707935 | 3_1:+3391169 | None:intergenic |
| GTATGCGGTTTCGAAAACAT+TGG | 0.716031 | 3_1:-3390265 | Msa0344610:CDS |
| AAGGCAAATCTACTTGAACA+GGG | 0.722044 | 3_1:-3390858 | Msa0344610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATCAAATCAAACATA+GGG | + | chr3_1:3389143-3389162 | None:intergenic | 15.0% |
| !! | ATAATAATCAAATCAAACAT+AGG | + | chr3_1:3389144-3389163 | None:intergenic | 15.0% |
| !!! | TATGTTTGATTTGATTATTA+TGG | - | chr3_1:3389143-3389162 | Msa0344610:intron | 15.0% |
| !! | ATTTATTACATGATTAATCA+TGG | + | chr3_1:3389759-3389778 | None:intergenic | 15.0% |
| !! | TATTTAATACATACAGAAAA+AGG | - | chr3_1:3390612-3390631 | Msa0344610:CDS | 15.0% |
| !!! | AATTAAGTGTTTCTAAAATA+AGG | - | chr3_1:3390905-3390924 | Msa0344610:CDS | 15.0% |
| !! | TATAAATGTAAATACAGAAA+TGG | + | chr3_1:3391029-3391048 | None:intergenic | 15.0% |
| !! | TAATAATCAAATCAAACATA+GGG | + | chr3_1:3389143-3389162 | None:intergenic | 15.0% |
| !! | ATAATAATCAAATCAAACAT+AGG | + | chr3_1:3389144-3389163 | None:intergenic | 15.0% |
| !!! | TATGTTTGATTTGATTATTA+TGG | - | chr3_1:3389143-3389162 | Msa0344610:intron | 15.0% |
| !! | ATTTATTACATGATTAATCA+TGG | + | chr3_1:3389759-3389778 | None:intergenic | 15.0% |
| !! | TATTTAATACATACAGAAAA+AGG | - | chr3_1:3390612-3390631 | Msa0344610:CDS | 15.0% |
| !!! | AATTAAGTGTTTCTAAAATA+AGG | - | chr3_1:3390905-3390924 | Msa0344610:CDS | 15.0% |
| !! | TATAAATGTAAATACAGAAA+TGG | + | chr3_1:3391029-3391048 | None:intergenic | 15.0% |
| !! | TAAAGAAAACAACATTGATA+TGG | - | chr3_1:3389882-3389901 | Msa0344610:intron | 20.0% |
| !! | GTAATTAATTACCATTAATC+AGG | + | chr3_1:3389984-3390003 | None:intergenic | 20.0% |
| !! | CCATTACAATAAAACAAAAA+TGG | + | chr3_1:3390006-3390025 | None:intergenic | 20.0% |
| !!! | CCATTTTTGTTTTATTGTAA+TGG | - | chr3_1:3390003-3390022 | Msa0344610:intron | 20.0% |
| !! | TAAAATTCAATAAGCAACAA+TGG | + | chr3_1:3390113-3390132 | None:intergenic | 20.0% |
| !! | ATTATTAATCTTACTTCTCT+GGG | + | chr3_1:3390432-3390451 | None:intergenic | 20.0% |
| !! | AATTATTAATCTTACTTCTC+TGG | + | chr3_1:3390433-3390452 | None:intergenic | 20.0% |
| !! | GAAAAATTTCAACAATTTAG+AGG | - | chr3_1:3390654-3390673 | Msa0344610:CDS | 20.0% |
| !!! | TGCACTTTTTAACATATATT+CGG | - | chr3_1:3390705-3390724 | Msa0344610:CDS | 20.0% |
| !! | TAAAGAAAACAACATTGATA+TGG | - | chr3_1:3389882-3389901 | Msa0344610:intron | 20.0% |
| !! | GTAATTAATTACCATTAATC+AGG | + | chr3_1:3389984-3390003 | None:intergenic | 20.0% |
| !! | CCATTACAATAAAACAAAAA+TGG | + | chr3_1:3390006-3390025 | None:intergenic | 20.0% |
| !!! | CCATTTTTGTTTTATTGTAA+TGG | - | chr3_1:3390003-3390022 | Msa0344610:intron | 20.0% |
| !! | TAAAATTCAATAAGCAACAA+TGG | + | chr3_1:3390113-3390132 | None:intergenic | 20.0% |
| !! | ATTATTAATCTTACTTCTCT+GGG | + | chr3_1:3390432-3390451 | None:intergenic | 20.0% |
| !! | AATTATTAATCTTACTTCTC+TGG | + | chr3_1:3390433-3390452 | None:intergenic | 20.0% |
| !! | GAAAAATTTCAACAATTTAG+AGG | - | chr3_1:3390654-3390673 | Msa0344610:CDS | 20.0% |
| !!! | TGCACTTTTTAACATATATT+CGG | - | chr3_1:3390705-3390724 | Msa0344610:CDS | 20.0% |
| !! | TGATTTTGTAAGTTTAGCTA+GGG | + | chr3_1:3389547-3389566 | None:intergenic | 25.0% |
| ! | TCATATCAAACGAAAATAAC+AGG | + | chr3_1:3390064-3390083 | None:intergenic | 25.0% |
| ! | AACATTTCCAAATTCTACTT+TGG | - | chr3_1:3390258-3390277 | Msa0344610:CDS | 25.0% |
| ! | ACATTTCCAAATTCTACTTT+GGG | - | chr3_1:3390259-3390278 | Msa0344610:CDS | 25.0% |
| ! | ATTATGTTCCTAAATGAATG+CGG | - | chr3_1:3390477-3390496 | Msa0344610:intron | 25.0% |
| ! | AATTCAGTGCTAAAAATGAA+AGG | - | chr3_1:3390554-3390573 | Msa0344610:intron | 25.0% |
| ! | ATGTATTAAATAAACAACCC+TGG | + | chr3_1:3390604-3390623 | None:intergenic | 25.0% |
| !! | GAAACCATGTTTTACATATT+GGG | + | chr3_1:3390739-3390758 | None:intergenic | 25.0% |
| !! | TGAAACCATGTTTTACATAT+TGG | + | chr3_1:3390740-3390759 | None:intergenic | 25.0% |
| ! | TACAGAAGACATAAAAATAG+AGG | + | chr3_1:3390818-3390837 | None:intergenic | 25.0% |
| ! | ACGAAAAATTCAGTACAAAT+TGG | + | chr3_1:3390863-3390882 | None:intergenic | 25.0% |
| !! | ACATTTAAAGTTGCTATACT+TGG | + | chr3_1:3390931-3390950 | None:intergenic | 25.0% |
| ! | AAGTATAGCAACTTTAAATG+TGG | - | chr3_1:3390930-3390949 | Msa0344610:intron | 25.0% |
| ! | GGATATTAAACAACATTTGT+AGG | + | chr3_1:3390961-3390980 | None:intergenic | 25.0% |
| ! | TGTTTAATATCCGAAATCAT+AGG | - | chr3_1:3390969-3390988 | Msa0344610:intron | 25.0% |
| ! | TAACCATTAACCTATGATTT+CGG | + | chr3_1:3390982-3391001 | None:intergenic | 25.0% |
| !! | ATATCAGTTTTCCAAAGAAA+AGG | - | chr3_1:3391148-3391167 | Msa0344610:intron | 25.0% |
| !! | TGATTTTGTAAGTTTAGCTA+GGG | + | chr3_1:3389547-3389566 | None:intergenic | 25.0% |
| ! | TCATATCAAACGAAAATAAC+AGG | + | chr3_1:3390064-3390083 | None:intergenic | 25.0% |
| ! | AACATTTCCAAATTCTACTT+TGG | - | chr3_1:3390258-3390277 | Msa0344610:CDS | 25.0% |
| ! | ACATTTCCAAATTCTACTTT+GGG | - | chr3_1:3390259-3390278 | Msa0344610:CDS | 25.0% |
| ! | ATTATGTTCCTAAATGAATG+CGG | - | chr3_1:3390477-3390496 | Msa0344610:intron | 25.0% |
| ! | AATTCAGTGCTAAAAATGAA+AGG | - | chr3_1:3390554-3390573 | Msa0344610:intron | 25.0% |
| ! | ATGTATTAAATAAACAACCC+TGG | + | chr3_1:3390604-3390623 | None:intergenic | 25.0% |
| !! | GAAACCATGTTTTACATATT+GGG | + | chr3_1:3390739-3390758 | None:intergenic | 25.0% |
| !! | TGAAACCATGTTTTACATAT+TGG | + | chr3_1:3390740-3390759 | None:intergenic | 25.0% |
| ! | TACAGAAGACATAAAAATAG+AGG | + | chr3_1:3390818-3390837 | None:intergenic | 25.0% |
| ! | ACGAAAAATTCAGTACAAAT+TGG | + | chr3_1:3390863-3390882 | None:intergenic | 25.0% |
| !! | ACATTTAAAGTTGCTATACT+TGG | + | chr3_1:3390931-3390950 | None:intergenic | 25.0% |
| ! | AAGTATAGCAACTTTAAATG+TGG | - | chr3_1:3390930-3390949 | Msa0344610:intron | 25.0% |
| ! | GGATATTAAACAACATTTGT+AGG | + | chr3_1:3390961-3390980 | None:intergenic | 25.0% |
| ! | TGTTTAATATCCGAAATCAT+AGG | - | chr3_1:3390969-3390988 | Msa0344610:intron | 25.0% |
| ! | TAACCATTAACCTATGATTT+CGG | + | chr3_1:3390982-3391001 | None:intergenic | 25.0% |
| !! | ATATCAGTTTTCCAAAGAAA+AGG | - | chr3_1:3391148-3391167 | Msa0344610:intron | 25.0% |
| GGAGAGATTACAATTATTCA+AGG | - | chr3_1:3389222-3389241 | Msa0344610:intron | 30.0% | |
| TCTTTGACATCATGATAGAA+GGG | + | chr3_1:3389319-3389338 | None:intergenic | 30.0% | |
| ! | GTGATTTTGTAAGTTTAGCT+AGG | + | chr3_1:3389548-3389567 | None:intergenic | 30.0% |
| ! | AGCAAGGACTAAATTGTTTT+TGG | - | chr3_1:3389625-3389644 | Msa0344610:intron | 30.0% |
| !!! | TAATGGTTTTGTTCCAATGT+CGG | - | chr3_1:3389711-3389730 | Msa0344610:CDS | 30.0% |
| TACATGATTAATCATGGCAT+TGG | + | chr3_1:3389753-3389772 | None:intergenic | 30.0% | |
| GCAATTCTAAACCTGATTAA+TGG | - | chr3_1:3389970-3389989 | Msa0344610:intron | 30.0% | |
| AATAAGCAACAATGGATGTT+GGG | + | chr3_1:3390105-3390124 | None:intergenic | 30.0% | |
| GTTTCTATGTGCTTCAAATA+TGG | - | chr3_1:3390163-3390182 | Msa0344610:CDS | 30.0% | |
| ATAAGAATCCGCATTCATTT+AGG | + | chr3_1:3390488-3390507 | None:intergenic | 30.0% | |
| TCATCACTAATATTTGATCC+AGG | - | chr3_1:3390583-3390602 | Msa0344610:intron | 30.0% | |
| CATCACTAATATTTGATCCA+GGG | - | chr3_1:3390584-3390603 | Msa0344610:CDS | 30.0% | |
| TTTAACATATATTCGGCTTC+TGG | - | chr3_1:3390712-3390731 | Msa0344610:CDS | 30.0% | |
| GAAGACATAAAAATAGAGGA+AGG | + | chr3_1:3390814-3390833 | None:intergenic | 30.0% | |
| TATCCGAAATCATAGGTTAA+TGG | - | chr3_1:3390976-3390995 | Msa0344610:intron | 30.0% | |
| TGTCAACTATATATGTTACC+AGG | - | chr3_1:3391096-3391115 | Msa0344610:intron | 30.0% | |
| ! | TCTTTGGAAAACTGATATGT+AGG | + | chr3_1:3391146-3391165 | None:intergenic | 30.0% |
| GGAGAGATTACAATTATTCA+AGG | - | chr3_1:3389222-3389241 | Msa0344610:intron | 30.0% | |
| TCTTTGACATCATGATAGAA+GGG | + | chr3_1:3389319-3389338 | None:intergenic | 30.0% | |
| ! | GTGATTTTGTAAGTTTAGCT+AGG | + | chr3_1:3389548-3389567 | None:intergenic | 30.0% |
| ! | AGCAAGGACTAAATTGTTTT+TGG | - | chr3_1:3389625-3389644 | Msa0344610:intron | 30.0% |
| !!! | TAATGGTTTTGTTCCAATGT+CGG | - | chr3_1:3389711-3389730 | Msa0344610:CDS | 30.0% |
| TACATGATTAATCATGGCAT+TGG | + | chr3_1:3389753-3389772 | None:intergenic | 30.0% | |
| GCAATTCTAAACCTGATTAA+TGG | - | chr3_1:3389970-3389989 | Msa0344610:intron | 30.0% | |
| AATAAGCAACAATGGATGTT+GGG | + | chr3_1:3390105-3390124 | None:intergenic | 30.0% | |
| GTTTCTATGTGCTTCAAATA+TGG | - | chr3_1:3390163-3390182 | Msa0344610:CDS | 30.0% | |
| ATAAGAATCCGCATTCATTT+AGG | + | chr3_1:3390488-3390507 | None:intergenic | 30.0% | |
| TCATCACTAATATTTGATCC+AGG | - | chr3_1:3390583-3390602 | Msa0344610:intron | 30.0% | |
| CATCACTAATATTTGATCCA+GGG | - | chr3_1:3390584-3390603 | Msa0344610:CDS | 30.0% | |
| TTTAACATATATTCGGCTTC+TGG | - | chr3_1:3390712-3390731 | Msa0344610:CDS | 30.0% | |
| GAAGACATAAAAATAGAGGA+AGG | + | chr3_1:3390814-3390833 | None:intergenic | 30.0% | |
| TATCCGAAATCATAGGTTAA+TGG | - | chr3_1:3390976-3390995 | Msa0344610:intron | 30.0% | |
| TGTCAACTATATATGTTACC+AGG | - | chr3_1:3391096-3391115 | Msa0344610:intron | 30.0% | |
| ! | TCTTTGGAAAACTGATATGT+AGG | + | chr3_1:3391146-3391165 | None:intergenic | 30.0% |
| GAGAAGAGAATGACTTACTT+GGG | + | chr3_1:3388969-3388988 | None:intergenic | 35.0% | |
| AGAGAAGAGAATGACTTACT+TGG | + | chr3_1:3388970-3388989 | None:intergenic | 35.0% | |
| AAGGCAAATCTACTTGAACA+GGG | - | chr3_1:3389241-3389260 | Msa0344610:intron | 35.0% | |
| GTCTTTGACATCATGATAGA+AGG | + | chr3_1:3389320-3389339 | None:intergenic | 35.0% | |
| CTAGGGAGATACGTTTAATT+TGG | + | chr3_1:3389530-3389549 | None:intergenic | 35.0% | |
| !! | CCTTGCTATTGAAGATGTTA+TGG | + | chr3_1:3389612-3389631 | None:intergenic | 35.0% |
| CCATAACATCTTCAATAGCA+AGG | - | chr3_1:3389609-3389628 | Msa0344610:intron | 35.0% | |
| AACCATTAGCTAGCATGTTA+TGG | + | chr3_1:3389699-3389718 | None:intergenic | 35.0% | |
| ATAAGCAACAATGGATGTTG+GGG | + | chr3_1:3390104-3390123 | None:intergenic | 35.0% | |
| CAATAAGCAACAATGGATGT+TGG | + | chr3_1:3390106-3390125 | None:intergenic | 35.0% | |
| CAAATATGGTTGTGTTCAAG+AGG | - | chr3_1:3390177-3390196 | Msa0344610:CDS | 35.0% | |
| ATGTTTGTGTACCTGTATCA+AGG | + | chr3_1:3390243-3390262 | None:intergenic | 35.0% | |
| ! | TTCCAAATTCTACTTTGGGA+TGG | - | chr3_1:3390263-3390282 | Msa0344610:CDS | 35.0% |
| !! | TCCAAATTCTACTTTGGGAT+GGG | - | chr3_1:3390264-3390283 | Msa0344610:CDS | 35.0% |
| ATTCTCGTATGCCAGAATAT+GGG | + | chr3_1:3390314-3390333 | None:intergenic | 35.0% | |
| AATGAATGCGGATTCTTATC+TGG | - | chr3_1:3390489-3390508 | Msa0344610:intron | 35.0% | |
| CACTGAATTGAGTTTCAAAC+AGG | + | chr3_1:3390543-3390562 | None:intergenic | 35.0% | |
| TGGACCCAATATGTAAAACA+TGG | - | chr3_1:3390732-3390751 | Msa0344610:CDS | 35.0% | |
| ! | TTTCACAGATGTTTTGCTAC+TGG | - | chr3_1:3390755-3390774 | Msa0344610:CDS | 35.0% |
| ! | TTCACAGATGTTTTGCTACT+GGG | - | chr3_1:3390756-3390775 | Msa0344610:CDS | 35.0% |
| TATATATGTTACCAGGTGTG+CGG | - | chr3_1:3391103-3391122 | Msa0344610:intron | 35.0% | |
| AACTGATATGTAGGCACATA+TGG | + | chr3_1:3391137-3391156 | None:intergenic | 35.0% | |
| AAAGAAAAGGCAACGAGTTT+GGG | - | chr3_1:3391161-3391180 | Msa0344610:CDS | 35.0% | |
| GGGAATTGAATATACTCCTT+TGG | - | chr3_1:3391181-3391200 | Msa0344610:CDS | 35.0% | |
| GAGAAGAGAATGACTTACTT+GGG | + | chr3_1:3388969-3388988 | None:intergenic | 35.0% | |
| AGAGAAGAGAATGACTTACT+TGG | + | chr3_1:3388970-3388989 | None:intergenic | 35.0% | |
| AAGGCAAATCTACTTGAACA+GGG | - | chr3_1:3389241-3389260 | Msa0344610:intron | 35.0% | |
| GTCTTTGACATCATGATAGA+AGG | + | chr3_1:3389320-3389339 | None:intergenic | 35.0% | |
| CTAGGGAGATACGTTTAATT+TGG | + | chr3_1:3389530-3389549 | None:intergenic | 35.0% | |
| !! | CCTTGCTATTGAAGATGTTA+TGG | + | chr3_1:3389612-3389631 | None:intergenic | 35.0% |
| CCATAACATCTTCAATAGCA+AGG | - | chr3_1:3389609-3389628 | Msa0344610:intron | 35.0% | |
| AACCATTAGCTAGCATGTTA+TGG | + | chr3_1:3389699-3389718 | None:intergenic | 35.0% | |
| ATAAGCAACAATGGATGTTG+GGG | + | chr3_1:3390104-3390123 | None:intergenic | 35.0% | |
| CAATAAGCAACAATGGATGT+TGG | + | chr3_1:3390106-3390125 | None:intergenic | 35.0% | |
| CAAATATGGTTGTGTTCAAG+AGG | - | chr3_1:3390177-3390196 | Msa0344610:CDS | 35.0% | |
| ATGTTTGTGTACCTGTATCA+AGG | + | chr3_1:3390243-3390262 | None:intergenic | 35.0% | |
| ! | TTCCAAATTCTACTTTGGGA+TGG | - | chr3_1:3390263-3390282 | Msa0344610:CDS | 35.0% |
| !! | TCCAAATTCTACTTTGGGAT+GGG | - | chr3_1:3390264-3390283 | Msa0344610:CDS | 35.0% |
| ATTCTCGTATGCCAGAATAT+GGG | + | chr3_1:3390314-3390333 | None:intergenic | 35.0% | |
| AATGAATGCGGATTCTTATC+TGG | - | chr3_1:3390489-3390508 | Msa0344610:intron | 35.0% | |
| CACTGAATTGAGTTTCAAAC+AGG | + | chr3_1:3390543-3390562 | None:intergenic | 35.0% | |
| TGGACCCAATATGTAAAACA+TGG | - | chr3_1:3390732-3390751 | Msa0344610:CDS | 35.0% | |
| ! | TTTCACAGATGTTTTGCTAC+TGG | - | chr3_1:3390755-3390774 | Msa0344610:CDS | 35.0% |
| ! | TTCACAGATGTTTTGCTACT+GGG | - | chr3_1:3390756-3390775 | Msa0344610:CDS | 35.0% |
| TATATATGTTACCAGGTGTG+CGG | - | chr3_1:3391103-3391122 | Msa0344610:intron | 35.0% | |
| AACTGATATGTAGGCACATA+TGG | + | chr3_1:3391137-3391156 | None:intergenic | 35.0% | |
| AAAGAAAAGGCAACGAGTTT+GGG | - | chr3_1:3391161-3391180 | Msa0344610:CDS | 35.0% | |
| GGGAATTGAATATACTCCTT+TGG | - | chr3_1:3391181-3391200 | Msa0344610:CDS | 35.0% | |
| ! | CTTCAGGTTACATAGCTTCA+TGG | - | chr3_1:3388890-3388909 | Msa0344610:CDS | 40.0% |
| CTTTAACAGTGTAACCACGA+TGG | + | chr3_1:3388933-3388952 | None:intergenic | 40.0% | |
| ACGGACATAGACACAAACAT+CGG | + | chr3_1:3389104-3389123 | None:intergenic | 40.0% | |
| ATCTTCTTCGGATCATCTAC+AGG | + | chr3_1:3389172-3389191 | None:intergenic | 40.0% | |
| ACCAAGTGGTTGATCTTCTT+CGG | + | chr3_1:3389184-3389203 | None:intergenic | 40.0% | |
| AACCACTTGGTTAAGCTTGA+AGG | - | chr3_1:3389193-3389212 | Msa0344610:intron | 40.0% | |
| CAAGGCAAATCTACTTGAAC+AGG | - | chr3_1:3389240-3389259 | Msa0344610:intron | 40.0% | |
| TTGATTGATCCTGCACTCAA+CGG | - | chr3_1:3389352-3389371 | Msa0344610:intron | 40.0% | |
| AAGACAACACGTTTCAGTGA+TGG | + | chr3_1:3389412-3389431 | None:intergenic | 40.0% | |
| ! | ATGTTGTTGTTGACGAGACT+TGG | - | chr3_1:3389482-3389501 | Msa0344610:intron | 40.0% |
| GTCCATAACATGCTAGCTAA+TGG | - | chr3_1:3389694-3389713 | Msa0344610:CDS | 40.0% | |
| !! | GATTAATCATGGCATTGGCA+TGG | + | chr3_1:3389748-3389767 | None:intergenic | 40.0% |
| GTATGCGGTTTCGAAAACAT+TGG | - | chr3_1:3389834-3389853 | Msa0344610:CDS | 40.0% | |
| GGTTACTATTAACCCAGCAA+TGG | - | chr3_1:3389903-3389922 | Msa0344610:intron | 40.0% | |
| ATTAACCCAGCAATGGTCAT+AGG | - | chr3_1:3389910-3389929 | Msa0344610:intron | 40.0% | |
| TTAACCCAGCAATGGTCATA+GGG | - | chr3_1:3389911-3389930 | Msa0344610:intron | 40.0% | |
| AGAGAGCTATTATCTGCAGA+AGG | + | chr3_1:3390215-3390234 | None:intergenic | 40.0% | |
| ACCCATCCCAAAGTAGAATT+TGG | + | chr3_1:3390268-3390287 | None:intergenic | 40.0% | |
| TGTTGCAAATGCCCATATTC+TGG | - | chr3_1:3390300-3390319 | Msa0344610:intron | 40.0% | |
| CATTCTCGTATGCCAGAATA+TGG | + | chr3_1:3390315-3390334 | None:intergenic | 40.0% | |
| AGCTAGTGGAAGACATTGTT+TGG | - | chr3_1:3390339-3390358 | Msa0344610:intron | 40.0% | |
| TTGCTACTGGGTAACTTGAA+TGG | - | chr3_1:3390768-3390787 | Msa0344610:CDS | 40.0% | |
| ! | CAAACTCGTTGCCTTTTCTT+TGG | + | chr3_1:3391162-3391181 | None:intergenic | 40.0% |
| CAAAGAAAAGGCAACGAGTT+TGG | - | chr3_1:3391160-3391179 | Msa0344610:CDS | 40.0% | |
| ! | CTTCAGGTTACATAGCTTCA+TGG | - | chr3_1:3388890-3388909 | Msa0344610:CDS | 40.0% |
| CTTTAACAGTGTAACCACGA+TGG | + | chr3_1:3388933-3388952 | None:intergenic | 40.0% | |
| ACGGACATAGACACAAACAT+CGG | + | chr3_1:3389104-3389123 | None:intergenic | 40.0% | |
| ATCTTCTTCGGATCATCTAC+AGG | + | chr3_1:3389172-3389191 | None:intergenic | 40.0% | |
| ACCAAGTGGTTGATCTTCTT+CGG | + | chr3_1:3389184-3389203 | None:intergenic | 40.0% | |
| AACCACTTGGTTAAGCTTGA+AGG | - | chr3_1:3389193-3389212 | Msa0344610:intron | 40.0% | |
| CAAGGCAAATCTACTTGAAC+AGG | - | chr3_1:3389240-3389259 | Msa0344610:intron | 40.0% | |
| TTGATTGATCCTGCACTCAA+CGG | - | chr3_1:3389352-3389371 | Msa0344610:intron | 40.0% | |
| AAGACAACACGTTTCAGTGA+TGG | + | chr3_1:3389412-3389431 | None:intergenic | 40.0% | |
| ! | ATGTTGTTGTTGACGAGACT+TGG | - | chr3_1:3389482-3389501 | Msa0344610:intron | 40.0% |
| GTCCATAACATGCTAGCTAA+TGG | - | chr3_1:3389694-3389713 | Msa0344610:CDS | 40.0% | |
| !! | GATTAATCATGGCATTGGCA+TGG | + | chr3_1:3389748-3389767 | None:intergenic | 40.0% |
| GTATGCGGTTTCGAAAACAT+TGG | - | chr3_1:3389834-3389853 | Msa0344610:CDS | 40.0% | |
| GGTTACTATTAACCCAGCAA+TGG | - | chr3_1:3389903-3389922 | Msa0344610:intron | 40.0% | |
| ATTAACCCAGCAATGGTCAT+AGG | - | chr3_1:3389910-3389929 | Msa0344610:intron | 40.0% | |
| TTAACCCAGCAATGGTCATA+GGG | - | chr3_1:3389911-3389930 | Msa0344610:intron | 40.0% | |
| AGAGAGCTATTATCTGCAGA+AGG | + | chr3_1:3390215-3390234 | None:intergenic | 40.0% | |
| ACCCATCCCAAAGTAGAATT+TGG | + | chr3_1:3390268-3390287 | None:intergenic | 40.0% | |
| TGTTGCAAATGCCCATATTC+TGG | - | chr3_1:3390300-3390319 | Msa0344610:intron | 40.0% | |
| CATTCTCGTATGCCAGAATA+TGG | + | chr3_1:3390315-3390334 | None:intergenic | 40.0% | |
| AGCTAGTGGAAGACATTGTT+TGG | - | chr3_1:3390339-3390358 | Msa0344610:intron | 40.0% | |
| TTGCTACTGGGTAACTTGAA+TGG | - | chr3_1:3390768-3390787 | Msa0344610:CDS | 40.0% | |
| ! | CAAACTCGTTGCCTTTTCTT+TGG | + | chr3_1:3391162-3391181 | None:intergenic | 40.0% |
| CAAAGAAAAGGCAACGAGTT+TGG | - | chr3_1:3391160-3391179 | Msa0344610:CDS | 40.0% | |
| AGCAACGTTGTGTGTGTAAC+TGG | - | chr3_1:3388865-3388884 | Msa0344610:CDS | 45.0% | |
| CATAGACACAAACATCGGAC+AGG | + | chr3_1:3389099-3389118 | None:intergenic | 45.0% | |
| GGGTCAAAACGTATGAAGCA+CGG | + | chr3_1:3389123-3389142 | None:intergenic | 45.0% | |
| TCCGAAGAAGATCAACCACT+TGG | - | chr3_1:3389180-3389199 | Msa0344610:intron | 45.0% | |
| CACCTTCAAGCTTAACCAAG+TGG | + | chr3_1:3389198-3389217 | None:intergenic | 45.0% | |
| !! | GGTTAAGCTTGAAGGTGCTA+AGG | - | chr3_1:3389201-3389220 | Msa0344610:intron | 45.0% |
| GCCTTTGATTCTGCTGTTCA+AGG | - | chr3_1:3389265-3389284 | Msa0344610:intron | 45.0% | |
| GCCTTGAACAGCAGAATCAA+AGG | + | chr3_1:3389269-3389288 | None:intergenic | 45.0% | |
| TCATGATGTCAAAGACCCTC+AGG | - | chr3_1:3389324-3389343 | Msa0344610:intron | 45.0% | |
| GATCAATCAACTCAGCCTGA+GGG | + | chr3_1:3389342-3389361 | None:intergenic | 45.0% | |
| ! | ACGTTTCAGTGATGGCGATT+TGG | + | chr3_1:3389404-3389423 | None:intergenic | 45.0% |
| ACAACAACATCAGGAGTTCG+AGG | + | chr3_1:3389472-3389491 | None:intergenic | 45.0% | |
| GTCTCGTCAACAACAACATC+AGG | + | chr3_1:3389481-3389500 | None:intergenic | 45.0% | |
| !! | CATGTTATGGACTAGCGCAT+TGG | + | chr3_1:3389686-3389705 | None:intergenic | 45.0% |
| CCACAGCTGAAACAGTCAAT+AGG | + | chr3_1:3389815-3389834 | None:intergenic | 45.0% | |
| ! | CCTATTGACTGTTTCAGCTG+TGG | - | chr3_1:3389812-3389831 | Msa0344610:CDS | 45.0% |
| ACTGTTTCAGCTGTGGTATG+CGG | - | chr3_1:3389819-3389838 | Msa0344610:CDS | 45.0% | |
| !! | TTTAGGACTGGTTGCAAGAG+AGG | + | chr3_1:3389937-3389956 | None:intergenic | 45.0% |
| TTGCAGCAGCACTTGTGTTT+AGG | + | chr3_1:3389954-3389973 | None:intergenic | 45.0% | |
| CTCTCTCACTTCCTTGATAC+AGG | - | chr3_1:3390229-3390248 | Msa0344610:CDS | 45.0% | |
| TACGAGAATGCTTCAGCTAG+TGG | - | chr3_1:3390325-3390344 | Msa0344610:intron | 45.0% | |
| ! | TCCTTTGGAAGTGAGCATCA+AGG | - | chr3_1:3391196-3391215 | Msa0344610:CDS | 45.0% |
| TCCTTGATGCTCACTTCCAA+AGG | + | chr3_1:3391200-3391219 | None:intergenic | 45.0% | |
| AGCAACGTTGTGTGTGTAAC+TGG | - | chr3_1:3388865-3388884 | Msa0344610:CDS | 45.0% | |
| CATAGACACAAACATCGGAC+AGG | + | chr3_1:3389099-3389118 | None:intergenic | 45.0% | |
| GGGTCAAAACGTATGAAGCA+CGG | + | chr3_1:3389123-3389142 | None:intergenic | 45.0% | |
| TCCGAAGAAGATCAACCACT+TGG | - | chr3_1:3389180-3389199 | Msa0344610:intron | 45.0% | |
| CACCTTCAAGCTTAACCAAG+TGG | + | chr3_1:3389198-3389217 | None:intergenic | 45.0% | |
| !! | GGTTAAGCTTGAAGGTGCTA+AGG | - | chr3_1:3389201-3389220 | Msa0344610:intron | 45.0% |
| GCCTTTGATTCTGCTGTTCA+AGG | - | chr3_1:3389265-3389284 | Msa0344610:intron | 45.0% | |
| GCCTTGAACAGCAGAATCAA+AGG | + | chr3_1:3389269-3389288 | None:intergenic | 45.0% | |
| TCATGATGTCAAAGACCCTC+AGG | - | chr3_1:3389324-3389343 | Msa0344610:intron | 45.0% | |
| GATCAATCAACTCAGCCTGA+GGG | + | chr3_1:3389342-3389361 | None:intergenic | 45.0% | |
| ! | ACGTTTCAGTGATGGCGATT+TGG | + | chr3_1:3389404-3389423 | None:intergenic | 45.0% |
| ACAACAACATCAGGAGTTCG+AGG | + | chr3_1:3389472-3389491 | None:intergenic | 45.0% | |
| GTCTCGTCAACAACAACATC+AGG | + | chr3_1:3389481-3389500 | None:intergenic | 45.0% | |
| !! | CATGTTATGGACTAGCGCAT+TGG | + | chr3_1:3389686-3389705 | None:intergenic | 45.0% |
| CCACAGCTGAAACAGTCAAT+AGG | + | chr3_1:3389815-3389834 | None:intergenic | 45.0% | |
| ! | CCTATTGACTGTTTCAGCTG+TGG | - | chr3_1:3389812-3389831 | Msa0344610:CDS | 45.0% |
| ACTGTTTCAGCTGTGGTATG+CGG | - | chr3_1:3389819-3389838 | Msa0344610:CDS | 45.0% | |
| !! | TTTAGGACTGGTTGCAAGAG+AGG | + | chr3_1:3389937-3389956 | None:intergenic | 45.0% |
| TTGCAGCAGCACTTGTGTTT+AGG | + | chr3_1:3389954-3389973 | None:intergenic | 45.0% | |
| CTCTCTCACTTCCTTGATAC+AGG | - | chr3_1:3390229-3390248 | Msa0344610:CDS | 45.0% | |
| TACGAGAATGCTTCAGCTAG+TGG | - | chr3_1:3390325-3390344 | Msa0344610:intron | 45.0% | |
| ! | TCCTTTGGAAGTGAGCATCA+AGG | - | chr3_1:3391196-3391215 | Msa0344610:CDS | 45.0% |
| TCCTTGATGCTCACTTCCAA+AGG | + | chr3_1:3391200-3391219 | None:intergenic | 45.0% | |
| GTTCGTTTCCTTCTCCATCG+TGG | - | chr3_1:3388916-3388935 | Msa0344610:CDS | 50.0% | |
| CAGTGTAACCACGATGGAGA+AGG | + | chr3_1:3388927-3388946 | None:intergenic | 50.0% | |
| TGACTTACTTGGGTCGCGAA+CGG | + | chr3_1:3388959-3388978 | None:intergenic | 50.0% | |
| TCTGCTGTTCAAGGCTGTCA+AGG | - | chr3_1:3389274-3389293 | Msa0344610:intron | 50.0% | |
| GGATCAATCAACTCAGCCTG+AGG | + | chr3_1:3389343-3389362 | None:intergenic | 50.0% | |
| !! | TTGAGAGTACCGTTGAGTGC+AGG | + | chr3_1:3389364-3389383 | None:intergenic | 50.0% |
| ! | CATTGGCTGAAGAAGCTGCA+TGG | - | chr3_1:3389851-3389870 | Msa0344610:CDS | 50.0% |
| ! | GCAGCACTTGTGTTTAGGAC+TGG | + | chr3_1:3389949-3389968 | None:intergenic | 50.0% |
| ! | TCTCTGGGAGTTGCAACGAA+GGG | + | chr3_1:3390417-3390436 | None:intergenic | 50.0% |
| ! | TTCTCTGGGAGTTGCAACGA+AGG | + | chr3_1:3390418-3390437 | None:intergenic | 50.0% |
| GTTCGTTTCCTTCTCCATCG+TGG | - | chr3_1:3388916-3388935 | Msa0344610:CDS | 50.0% | |
| CAGTGTAACCACGATGGAGA+AGG | + | chr3_1:3388927-3388946 | None:intergenic | 50.0% | |
| TGACTTACTTGGGTCGCGAA+CGG | + | chr3_1:3388959-3388978 | None:intergenic | 50.0% | |
| TCTGCTGTTCAAGGCTGTCA+AGG | - | chr3_1:3389274-3389293 | Msa0344610:intron | 50.0% | |
| GGATCAATCAACTCAGCCTG+AGG | + | chr3_1:3389343-3389362 | None:intergenic | 50.0% | |
| !! | TTGAGAGTACCGTTGAGTGC+AGG | + | chr3_1:3389364-3389383 | None:intergenic | 50.0% |
| ! | CATTGGCTGAAGAAGCTGCA+TGG | - | chr3_1:3389851-3389870 | Msa0344610:CDS | 50.0% |
| ! | GCAGCACTTGTGTTTAGGAC+TGG | + | chr3_1:3389949-3389968 | None:intergenic | 50.0% |
| ! | TCTCTGGGAGTTGCAACGAA+GGG | + | chr3_1:3390417-3390436 | None:intergenic | 50.0% |
| ! | TTCTCTGGGAGTTGCAACGA+AGG | + | chr3_1:3390418-3390437 | None:intergenic | 50.0% |
| GTGTGTGTAACTGGCGCTTC+AGG | - | chr3_1:3388874-3388893 | Msa0344610:CDS | 55.0% | |
| GGCACACACTTTGCCGACAT+TGG | + | chr3_1:3389727-3389746 | None:intergenic | 55.0% | |
| GAGGCCCTATGACCATTGCT+GGG | + | chr3_1:3389918-3389937 | None:intergenic | 55.0% | |
| AGAGGCCCTATGACCATTGC+TGG | + | chr3_1:3389919-3389938 | None:intergenic | 55.0% | |
| GTGTGTGTAACTGGCGCTTC+AGG | - | chr3_1:3388874-3388893 | Msa0344610:CDS | 55.0% | |
| GGCACACACTTTGCCGACAT+TGG | + | chr3_1:3389727-3389746 | None:intergenic | 55.0% | |
| GAGGCCCTATGACCATTGCT+GGG | + | chr3_1:3389918-3389937 | None:intergenic | 55.0% | |
| AGAGGCCCTATGACCATTGC+TGG | + | chr3_1:3389919-3389938 | None:intergenic | 55.0% | |
| CTTACTTGGGTCGCGAACGG+TGG | + | chr3_1:3388956-3388975 | None:intergenic | 60.0% | |
| CGCAACAGCAGCAGCAGAAG+AGG | + | chr3_1:3389437-3389456 | None:intergenic | 60.0% | |
| TGGCTTATCGTCCGCACACC+TGG | + | chr3_1:3391117-3391136 | None:intergenic | 60.0% | |
| CTTACTTGGGTCGCGAACGG+TGG | + | chr3_1:3388956-3388975 | None:intergenic | 60.0% | |
| CGCAACAGCAGCAGCAGAAG+AGG | + | chr3_1:3389437-3389456 | None:intergenic | 60.0% | |
| TGGCTTATCGTCCGCACACC+TGG | + | chr3_1:3391117-3391136 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 3388859 | 3391262 | 3388859 | ID=Msa0344610;Name=Msa0344610 |
| chr3_1 | mRNA | 3388859 | 3391262 | 3388859 | ID=Msa0344610-mRNA-1;Parent=Msa0344610;Name=Msa0344610-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|5|0|322 |
| chr3_1 | exon | 3391151 | 3391262 | 3391151 | ID=Msa0344610-mRNA-1:exon:1082;Parent=Msa0344610-mRNA-1 |
| chr3_1 | exon | 3390584 | 3390945 | 3390584 | ID=Msa0344610-mRNA-1:exon:1081;Parent=Msa0344610-mRNA-1 |
| chr3_1 | exon | 3390130 | 3390292 | 3390130 | ID=Msa0344610-mRNA-1:exon:1080;Parent=Msa0344610-mRNA-1 |
| chr3_1 | exon | 3389684 | 3389870 | 3389684 | ID=Msa0344610-mRNA-1:exon:1079;Parent=Msa0344610-mRNA-1 |
| chr3_1 | exon | 3388859 | 3389003 | 3388859 | ID=Msa0344610-mRNA-1:exon:1078;Parent=Msa0344610-mRNA-1 |
| chr3_1 | CDS | 3391151 | 3391262 | 3391151 | ID=Msa0344610-mRNA-1:cds;Parent=Msa0344610-mRNA-1 |
| chr3_1 | CDS | 3390584 | 3390945 | 3390584 | ID=Msa0344610-mRNA-1:cds;Parent=Msa0344610-mRNA-1 |
| chr3_1 | CDS | 3390130 | 3390292 | 3390130 | ID=Msa0344610-mRNA-1:cds;Parent=Msa0344610-mRNA-1 |
| chr3_1 | CDS | 3389684 | 3389870 | 3389684 | ID=Msa0344610-mRNA-1:cds;Parent=Msa0344610-mRNA-1 |
| chr3_1 | CDS | 3388859 | 3389003 | 3388859 | ID=Msa0344610-mRNA-1:cds;Parent=Msa0344610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
