Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470040 | XP_003598007.1 | 98.294 | 293 | 5 | 0 | 1 | 293 | 1 | 293 | 0.0 | 598 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470040 | sp|A0A0B6VQ48|PAR1_ROSHC | 76.190 | 294 | 70 | 0 | 1 | 294 | 1 | 294 | 1.84e-173 | 489 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470040 | G7IYC6 | 98.294 | 293 | 5 | 0 | 1 | 293 | 1 | 293 | 0.0 | 598 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0143280 | Msa0470040 | 0.811419 | 7.066252e-51 | -8.615850e-47 |
| Msa0163960 | Msa0470040 | 0.803476 | 3.423029e-49 | -8.615850e-47 |
| Msa0184510 | Msa0470040 | 0.801427 | 9.052862e-49 | -8.615850e-47 |
| Msa0392090 | Msa0470040 | 0.977308 | 1.601403e-143 | -8.615850e-47 |
| Msa0470000 | Msa0470040 | 0.969879 | 8.938471e-131 | -8.615850e-47 |
| Msa0470040 | Msa0487890 | 0.959942 | 5.318531e-118 | -8.615850e-47 |
| Msa0470040 | Msa0561420 | 0.808490 | 3.019212e-50 | -8.615850e-47 |
| Msa0470040 | Msa0615430 | 0.801534 | 8.606905e-49 | -8.615850e-47 |
| Msa0470040 | Msa0698480 | 0.802848 | 4.616221e-49 | -8.615850e-47 |
| Msa0470040 | Msa0698650 | 0.810548 | 1.091376e-50 | -8.615850e-47 |
| Msa0470040 | Msa0803530 | 0.815486 | 9.020006e-52 | -8.615850e-47 |
| Msa0470040 | Msa0882370 | -0.807340 | 5.302632e-50 | -8.615850e-47 |
| Msa0470040 | Msa0950470 | 0.819419 | 1.172800e-52 | -8.615850e-47 |
| Msa0470040 | Msa0950570 | 0.817532 | 3.139988e-52 | -8.615850e-47 |
| Msa0470040 | Msa1124210 | -0.807750 | 4.338718e-50 | -8.615850e-47 |
| Msa0470040 | Msa1125450 | 0.805097 | 1.573703e-49 | -8.615850e-47 |
| Msa0470040 | Msa1164570 | 0.802695 | 4.966028e-49 | -8.615850e-47 |
| Msa0470040 | Msa1225650 | 0.826059 | 3.339633e-54 | -8.615850e-47 |
| Msa0470040 | Msa1386250 | 0.803325 | 3.679769e-49 | -8.615850e-47 |
| Msa0470040 | Msa1413190 | 0.834199 | 3.441320e-56 | -8.615850e-47 |
| Msa0470040 | Msa1429510 | 0.836938 | 6.976672e-57 | -8.615850e-47 |
| Msa0470040 | Msa1462780 | -0.819746 | 9.878354e-53 | -8.615850e-47 |
| Msa0344610 | Msa0470040 | 0.974166 | 1.116067e-137 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470040 | MtrunA17_Chr3g0077231 | 98.294 | 293 | 5 | 0 | 1 | 293 | 1 | 293 | 0.0 | 598 |
| Msa0470040 | MtrunA17_Chr3g0077221 | 91.753 | 291 | 24 | 0 | 4 | 294 | 8 | 298 | 0.0 | 561 |
| Msa0470040 | MtrunA17_Chr8g0364051 | 70.608 | 296 | 85 | 2 | 5 | 299 | 7 | 301 | 4.14e-154 | 437 |
| Msa0470040 | MtrunA17_Chr8g0363831 | 69.310 | 290 | 88 | 1 | 5 | 294 | 8 | 296 | 2.87e-150 | 427 |
| Msa0470040 | MtrunA17_Chr4g0039311 | 67.241 | 290 | 95 | 0 | 5 | 294 | 10 | 299 | 7.17e-150 | 426 |
| Msa0470040 | MtrunA17_Chr4g0039321 | 65.657 | 297 | 99 | 1 | 1 | 294 | 1 | 297 | 1.10e-146 | 418 |
| Msa0470040 | MtrunA17_Chr5g0431311 | 50.000 | 282 | 135 | 5 | 3 | 281 | 2 | 280 | 6.90e-87 | 266 |
| Msa0470040 | MtrunA17_Chr4g0001321 | 49.320 | 294 | 140 | 6 | 3 | 294 | 14 | 300 | 2.00e-86 | 265 |
| Msa0470040 | MtrunA17_Chr1g0155411 | 41.066 | 319 | 179 | 5 | 3 | 315 | 5 | 320 | 2.67e-83 | 257 |
| Msa0470040 | MtrunA17_Chr2g0331211 | 46.619 | 281 | 145 | 5 | 6 | 282 | 5 | 284 | 3.05e-83 | 257 |
| Msa0470040 | MtrunA17_Chr2g0333781 | 47.635 | 296 | 146 | 6 | 1 | 294 | 15 | 303 | 2.41e-82 | 255 |
| Msa0470040 | MtrunA17_Chr5g0423551 | 44.891 | 274 | 145 | 5 | 7 | 277 | 5 | 275 | 4.33e-81 | 251 |
| Msa0470040 | MtrunA17_Chr3g0106111 | 44.326 | 282 | 151 | 5 | 3 | 281 | 2 | 280 | 4.51e-79 | 246 |
| Msa0470040 | MtrunA17_Chr1g0155431 | 40.461 | 304 | 168 | 6 | 3 | 299 | 5 | 302 | 7.40e-76 | 238 |
| Msa0470040 | MtrunA17_Chr4g0002661 | 44.000 | 275 | 147 | 6 | 2 | 273 | 9 | 279 | 4.74e-71 | 225 |
| Msa0470040 | MtrunA17_Chr4g0048961 | 40.845 | 284 | 154 | 5 | 7 | 278 | 15 | 296 | 1.60e-63 | 206 |
| Msa0470040 | MtrunA17_Chr4g0002961 | 44.000 | 275 | 147 | 6 | 2 | 273 | 9 | 279 | 3.47e-62 | 202 |
| Msa0470040 | MtrunA17_Chr2g0291541 | 43.911 | 271 | 138 | 9 | 5 | 267 | 9 | 273 | 4.36e-62 | 202 |
| Msa0470040 | MtrunA17_Chr7g0245671 | 39.855 | 276 | 155 | 4 | 6 | 273 | 8 | 280 | 4.65e-61 | 199 |
| Msa0470040 | MtrunA17_Chr7g0245741 | 37.363 | 273 | 163 | 4 | 6 | 273 | 8 | 277 | 7.70e-59 | 194 |
| Msa0470040 | MtrunA17_Chr4g0042101 | 39.189 | 296 | 156 | 8 | 7 | 281 | 25 | 317 | 1.87e-56 | 189 |
| Msa0470040 | MtrunA17_Chr7g0245691 | 37.545 | 277 | 161 | 5 | 6 | 273 | 8 | 281 | 2.02e-56 | 187 |
| Msa0470040 | MtrunA17_Chr7g0245731 | 36.996 | 273 | 164 | 4 | 6 | 273 | 58 | 327 | 8.99e-56 | 187 |
| Msa0470040 | MtrunA17_Chr7g0245641 | 38.406 | 276 | 159 | 5 | 6 | 273 | 45 | 317 | 1.00e-55 | 187 |
| Msa0470040 | MtrunA17_Chr3g0080551 | 80.180 | 111 | 21 | 1 | 102 | 211 | 18 | 128 | 4.38e-54 | 175 |
| Msa0470040 | MtrunA17_Chr7g0245631 | 36.765 | 272 | 164 | 4 | 6 | 272 | 8 | 276 | 3.06e-53 | 179 |
| Msa0470040 | MtrunA17_Chr4g0010991 | 35.000 | 280 | 168 | 5 | 2 | 272 | 4 | 278 | 1.34e-45 | 159 |
| Msa0470040 | MtrunA17_Chr4g0039331 | 44.324 | 185 | 50 | 5 | 89 | 272 | 2 | 134 | 4.57e-42 | 144 |
| Msa0470040 | MtrunA17_Chr7g0245711 | 34.177 | 237 | 149 | 3 | 41 | 273 | 6 | 239 | 2.46e-40 | 144 |
| Msa0470040 | MtrunA17_Chr5g0411071 | 28.852 | 305 | 196 | 7 | 1 | 299 | 7 | 296 | 9.75e-36 | 132 |
| Msa0470040 | MtrunA17_Chr2g0282001 | 32.423 | 293 | 171 | 6 | 6 | 275 | 7 | 295 | 3.89e-34 | 129 |
| Msa0470040 | MtrunA17_Chr6g0450211 | 31.636 | 275 | 165 | 9 | 5 | 266 | 54 | 318 | 2.07e-33 | 127 |
| Msa0470040 | MtrunA17_Chr2g0281991 | 31.142 | 289 | 180 | 5 | 6 | 275 | 8 | 296 | 9.44e-32 | 122 |
| Msa0470040 | MtrunA17_Chr2g0282011 | 31.741 | 293 | 173 | 6 | 6 | 275 | 8 | 296 | 2.81e-30 | 119 |
| Msa0470040 | MtrunA17_Chr7g0275521 | 32.323 | 297 | 173 | 9 | 6 | 278 | 7 | 299 | 4.02e-30 | 118 |
| Msa0470040 | MtrunA17_Chr1g0202161 | 91.071 | 56 | 5 | 0 | 104 | 159 | 43 | 98 | 9.22e-27 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470040 | AT5G19440.1 | 75.517 | 290 | 71 | 0 | 5 | 294 | 9 | 298 | 4.15e-166 | 468 |
| Msa0470040 | AT1G51410.1 | 73.038 | 293 | 79 | 0 | 2 | 294 | 5 | 297 | 1.61e-165 | 466 |
| Msa0470040 | AT1G09510.1 | 53.952 | 291 | 134 | 0 | 4 | 294 | 6 | 296 | 1.06e-108 | 322 |
| Msa0470040 | AT1G09480.2 | 56.767 | 266 | 115 | 0 | 5 | 270 | 7 | 272 | 5.02e-106 | 315 |
| Msa0470040 | AT1G09480.1 | 56.554 | 267 | 116 | 0 | 4 | 270 | 53 | 319 | 1.10e-105 | 316 |
| Msa0470040 | AT1G66800.1 | 57.519 | 266 | 109 | 1 | 5 | 270 | 7 | 268 | 7.72e-103 | 307 |
| Msa0470040 | AT1G09490.1 | 54.815 | 270 | 122 | 0 | 5 | 274 | 7 | 276 | 1.09e-102 | 306 |
| Msa0470040 | AT1G09500.1 | 54.182 | 275 | 125 | 1 | 5 | 278 | 7 | 281 | 1.69e-102 | 306 |
| Msa0470040 | AT1G09500.3 | 54.412 | 272 | 123 | 1 | 5 | 275 | 7 | 278 | 2.04e-102 | 304 |
| Msa0470040 | AT4G35420.1 | 50.735 | 272 | 131 | 3 | 6 | 275 | 8 | 278 | 1.81e-94 | 286 |
| Msa0470040 | AT1G15950.3 | 48.805 | 293 | 141 | 6 | 4 | 294 | 11 | 296 | 4.89e-83 | 257 |
| Msa0470040 | AT1G15950.1 | 48.805 | 293 | 141 | 6 | 4 | 294 | 11 | 296 | 4.89e-83 | 257 |
| Msa0470040 | AT5G58490.1 | 47.687 | 281 | 141 | 5 | 4 | 281 | 7 | 284 | 9.25e-83 | 256 |
| Msa0470040 | AT1G15950.2 | 48.805 | 293 | 141 | 6 | 4 | 294 | 11 | 296 | 1.24e-82 | 256 |
| Msa0470040 | AT1G09500.2 | 50.617 | 243 | 119 | 1 | 37 | 278 | 5 | 247 | 4.40e-81 | 250 |
| Msa0470040 | AT1G09490.2 | 50.847 | 236 | 116 | 0 | 39 | 274 | 10 | 245 | 2.23e-80 | 248 |
| Msa0470040 | AT1G15950.6 | 49.817 | 273 | 129 | 5 | 4 | 275 | 11 | 276 | 1.14e-78 | 244 |
| Msa0470040 | AT1G15950.4 | 49.110 | 281 | 134 | 6 | 4 | 283 | 11 | 283 | 3.36e-78 | 243 |
| Msa0470040 | AT1G15950.5 | 49.815 | 271 | 128 | 5 | 4 | 273 | 11 | 274 | 7.48e-78 | 242 |
| Msa0470040 | AT1G80820.1 | 46.284 | 296 | 150 | 7 | 1 | 294 | 3 | 291 | 3.83e-77 | 241 |
| Msa0470040 | AT1G68540.1 | 42.456 | 285 | 150 | 6 | 8 | 282 | 6 | 286 | 8.51e-77 | 240 |
| Msa0470040 | AT1G80820.2 | 47.101 | 276 | 138 | 6 | 1 | 275 | 3 | 271 | 1.17e-72 | 228 |
| Msa0470040 | AT2G02400.1 | 43.431 | 274 | 145 | 7 | 1 | 270 | 1 | 268 | 9.52e-72 | 227 |
| Msa0470040 | AT5G42800.1 | 41.297 | 293 | 164 | 4 | 5 | 292 | 7 | 296 | 3.09e-69 | 223 |
| Msa0470040 | AT1G25460.1 | 41.455 | 275 | 157 | 4 | 8 | 280 | 6 | 278 | 2.45e-66 | 213 |
| Msa0470040 | AT2G33590.1 | 41.379 | 290 | 162 | 6 | 6 | 290 | 9 | 295 | 2.56e-61 | 200 |
| Msa0470040 | AT1G76470.1 | 44.364 | 275 | 143 | 7 | 6 | 274 | 7 | 277 | 1.42e-59 | 196 |
| Msa0470040 | AT1G61720.1 | 37.179 | 312 | 178 | 5 | 3 | 298 | 10 | 319 | 4.43e-59 | 195 |
| Msa0470040 | AT2G33600.1 | 42.268 | 291 | 158 | 7 | 6 | 290 | 9 | 295 | 1.59e-58 | 193 |
| Msa0470040 | AT4G27250.2 | 38.996 | 259 | 142 | 6 | 7 | 253 | 14 | 268 | 5.90e-51 | 174 |
| Msa0470040 | AT4G27250.1 | 38.433 | 268 | 141 | 7 | 7 | 253 | 14 | 278 | 8.51e-51 | 174 |
| Msa0470040 | AT2G45400.2 | 34.164 | 281 | 176 | 3 | 2 | 273 | 36 | 316 | 1.47e-47 | 165 |
| Msa0470040 | AT2G45400.1 | 32.407 | 324 | 209 | 4 | 2 | 315 | 36 | 359 | 2.83e-47 | 165 |
| Msa0470040 | AT1G15950.7 | 44.000 | 200 | 108 | 4 | 97 | 294 | 1 | 198 | 1.54e-43 | 152 |
| Msa0470040 | AT2G23910.2 | 30.515 | 272 | 178 | 6 | 7 | 275 | 11 | 274 | 4.02e-42 | 149 |
| Msa0470040 | AT2G23910.3 | 30.741 | 270 | 176 | 6 | 7 | 273 | 11 | 272 | 5.65e-42 | 149 |
| Msa0470040 | AT2G23910.1 | 30.741 | 270 | 176 | 6 | 7 | 273 | 11 | 272 | 1.04e-41 | 149 |
| Msa0470040 | AT4G30470.1 | 31.047 | 277 | 179 | 6 | 2 | 275 | 6 | 273 | 1.08e-40 | 146 |
| Msa0470040 | AT2G45400.4 | 36.364 | 220 | 133 | 2 | 2 | 214 | 36 | 255 | 3.43e-40 | 143 |
| Msa0470040 | AT1G68540.2 | 40.000 | 180 | 101 | 4 | 109 | 282 | 1 | 179 | 6.87e-40 | 141 |
| Msa0470040 | AT2G23910.4 | 30.263 | 228 | 148 | 6 | 49 | 273 | 19 | 238 | 8.11e-32 | 121 |
| Msa0470040 | AT2G45400.3 | 30.992 | 242 | 160 | 2 | 39 | 273 | 18 | 259 | 1.11e-31 | 122 |
| Msa0470040 | AT5G14700.1 | 25.850 | 294 | 187 | 9 | 3 | 278 | 52 | 332 | 1.66e-26 | 109 |
| Msa0470040 | AT5G14700.2 | 28.641 | 206 | 125 | 5 | 3 | 194 | 52 | 249 | 3.05e-22 | 95.9 |
| Msa0470040 | AT4G33360.3 | 24.125 | 257 | 168 | 7 | 6 | 256 | 3 | 238 | 1.89e-13 | 71.2 |
| Msa0470040 | AT4G33360.2 | 24.125 | 257 | 168 | 7 | 6 | 256 | 15 | 250 | 1.99e-13 | 70.9 |
Find 88 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAGTTTGCTGTTGGCTTC+TGG | 0.222844 | 3_3:+72107200 | Msa0470040:intron |
| CTAGGGAGATACGTTTAATT+TGG | 0.229039 | 3_3:-72105058 | None:intergenic |
| TGGCTTCTGGAGGGCATGTT+TGG | 0.232027 | 3_3:+72107213 | Msa0470040:CDS |
| ACCCATCCCAAAGTAGAATT+TGG | 0.245483 | 3_3:-72105790 | None:intergenic |
| GGCTTCTGGAGGGCATGTTT+GGG | 0.254556 | 3_3:+72107214 | Msa0470040:CDS |
| CATTCTCGTATGCCAGAATA+TGG | 0.267945 | 3_3:-72105837 | None:intergenic |
| GCAATTCTAAACCTGATTAA+TGG | 0.275531 | 3_3:+72105501 | Msa0470040:CDS |
| CTTCCCCTTTGTTGCGAGTC+TGG | 0.282289 | 3_3:+72107372 | Msa0470040:CDS |
| TTTGTTGCGAGTCTGGTTGC+TGG | 0.285935 | 3_3:+72107379 | Msa0470040:CDS |
| AATTATTAATCTTACTTCTC+TGG | 0.299337 | 3_3:-72105955 | None:intergenic |
| TAAAGAAAACAACATTGATA+TGG | 0.308617 | 3_3:+72105413 | Msa0470040:CDS |
| AACATTTCCAAATTCTACTT+TGG | 0.318580 | 3_3:+72105783 | Msa0470040:CDS |
| TTGCAGCAGCACTTGTGTTT+AGG | 0.321177 | 3_3:-72105482 | None:intergenic |
| TGTTGCAAATGCCCATATTC+TGG | 0.323215 | 3_3:+72105825 | Msa0470040:CDS |
| GTAATTAATTACCATTAATC+AGG | 0.328588 | 3_3:-72105512 | None:intergenic |
| CAAGGCAAATCTACTTGAAC+AGG | 0.339055 | 3_3:+72104771 | Msa0470040:CDS |
| GCCTTTGATTCTGCTGTTCA+AGG | 0.346135 | 3_3:+72104796 | Msa0470040:CDS |
| GTCTTTGACATCATGATAGA+AGG | 0.357010 | 3_3:-72104848 | None:intergenic |
| ATTAACCCAGCAATGGTCAT+AGG | 0.359026 | 3_3:+72105441 | Msa0470040:CDS |
| AACTGATATGTAGGCACATA+TGG | 0.371044 | 3_3:-72106659 | None:intergenic |
| AGCTAGTGGAAGACATTGTT+TGG | 0.373238 | 3_3:+72105864 | Msa0470040:CDS |
| AGCAACGTTGTGTGTGTAAC+TGG | 0.375079 | 3_3:+72104396 | Msa0470040:CDS |
| ACCAAGTGGTTGATCTTCTT+CGG | 0.375522 | 3_3:-72104712 | None:intergenic |
| ACATTTCCAAATTCTACTTT+GGG | 0.382077 | 3_3:+72105784 | Msa0470040:CDS |
| AGAGGCCCTATGACCATTGC+TGG | 0.404733 | 3_3:-72105447 | None:intergenic |
| ATTATTAATCTTACTTCTCT+GGG | 0.410205 | 3_3:-72105954 | None:intergenic |
| ACGTTTCAGTGATGGCGATT+TGG | 0.412461 | 3_3:-72104932 | None:intergenic |
| GTGTGTGTAACTGGCGCTTC+AGG | 0.413471 | 3_3:+72104405 | Msa0470040:CDS |
| AAGTGCTGGCAGCCGCTTTG+AGG | 0.416822 | 3_3:+72107285 | Msa0470040:CDS |
| AACCACTTGGTTAAGCTTGA+AGG | 0.417225 | 3_3:+72104724 | Msa0470040:CDS |
| CTTCAGGTTACATAGCTTCA+TGG | 0.422476 | 3_3:+72104421 | Msa0470040:CDS |
| TCTTTGGAAAACTGATATGT+AGG | 0.433529 | 3_3:-72106668 | None:intergenic |
| GTTGTTTCTGTGGTAAGTGC+TGG | 0.448507 | 3_3:+72107271 | Msa0470040:CDS |
| TCCAAATTCTACTTTGGGAT+GGG | 0.448702 | 3_3:+72105789 | Msa0470040:CDS |
| GGAGAGATTACAATTATTCA+AGG | 0.452632 | 3_3:+72104753 | Msa0470040:CDS |
| GCAACCAGACTCGCAACAAA+GGG | 0.467024 | 3_3:-72107376 | None:intergenic |
| GTCTGGTTGCTGGGCAGCAA+GGG | 0.469827 | 3_3:+72107389 | Msa0470040:CDS |
| CGCAACAGCAGCAGCAGAAG+AGG | 0.476034 | 3_3:-72104965 | None:intergenic |
| TTCCAAATTCTACTTTGGGA+TGG | 0.486039 | 3_3:+72105788 | Msa0470040:CDS |
| TTCTGGAGGGCATGTTTGGG+AGG | 0.487310 | 3_3:+72107217 | Msa0470040:CDS |
| GTCTCGTCAACAACAACATC+AGG | 0.489728 | 3_3:-72105009 | None:intergenic |
| TTGTTGCGAGTCTGGTTGCT+GGG | 0.503921 | 3_3:+72107380 | Msa0470040:CDS |
| CTGTCAGCTTGTTGTTTCTG+TGG | 0.508750 | 3_3:+72107261 | Msa0470040:CDS |
| AGTTTGCTGTTGGCTTCTGG+AGG | 0.509079 | 3_3:+72107203 | Msa0470040:intron |
| AGCAAGAAAACCCTCCCAGC+AGG | 0.509988 | 3_3:-72107317 | None:intergenic |
| AGTCTGGTTGCTGGGCAGCA+AGG | 0.512445 | 3_3:+72107388 | Msa0470040:CDS |
| TTTAGGACTGGTTGCAAGAG+AGG | 0.512693 | 3_3:-72105465 | None:intergenic |
| TCATGATGTCAAAGACCCTC+AGG | 0.517650 | 3_3:+72104855 | Msa0470040:CDS |
| GCAGCACTTGTGTTTAGGAC+TGG | 0.518349 | 3_3:-72105477 | None:intergenic |
| TACGAGAATGCTTCAGCTAG+TGG | 0.518867 | 3_3:+72105850 | Msa0470040:CDS |
| AGCAACCAGACTCGCAACAA+AGG | 0.522931 | 3_3:-72107377 | None:intergenic |
| TCTGCTGTTCAAGGCTGTCA+AGG | 0.530516 | 3_3:+72104805 | Msa0470040:CDS |
| GTTTGCTGTTGGCTTCTGGA+GGG | 0.530891 | 3_3:+72107204 | Msa0470040:intron |
| GGTTAAGCTTGAAGGTGCTA+AGG | 0.535332 | 3_3:+72104732 | Msa0470040:CDS |
| ATGTTGTTGTTGACGAGACT+TGG | 0.540828 | 3_3:+72105013 | Msa0470040:CDS |
| TTAACCCAGCAATGGTCATA+GGG | 0.542832 | 3_3:+72105442 | Msa0470040:CDS |
| CAGCAAGGGTCCTCTATGCT+CGG | 0.544029 | 3_3:+72107403 | Msa0470040:CDS |
| ATTCTCGTATGCCAGAATAT+GGG | 0.546372 | 3_3:-72105836 | None:intergenic |
| GCCTTGAACAGCAGAATCAA+AGG | 0.555036 | 3_3:-72104797 | None:intergenic |
| AAGACAACACGTTTCAGTGA+TGG | 0.558880 | 3_3:-72104940 | None:intergenic |
| TTGAGAGTACCGTTGAGTGC+AGG | 0.577644 | 3_3:-72104892 | None:intergenic |
| CACCTTCAAGCTTAACCAAG+TGG | 0.579342 | 3_3:-72104726 | None:intergenic |
| CATTGGCTGAAGAAGCTGCA+TGG | 0.580278 | 3_3:+72105382 | Msa0470040:CDS |
| TGACTTACTTGGGTCGCGAA+CGG | 0.581536 | 3_3:-72104487 | None:intergenic |
| CAGTGTAACCACGATGGAGA+AGG | 0.586371 | 3_3:-72104455 | None:intergenic |
| CAGACTCGCAACAAAGGGGA+AGG | 0.586491 | 3_3:-72107371 | None:intergenic |
| CTTACTTGGGTCGCGAACGG+TGG | 0.590707 | 3_3:-72104484 | None:intergenic |
| TCTTTGACATCATGATAGAA+GGG | 0.593847 | 3_3:-72104847 | None:intergenic |
| TTCTCTGGGAGTTGCAACGA+AGG | 0.598543 | 3_3:-72105940 | None:intergenic |
| ACAACACAATCCGAGCATAG+AGG | 0.608634 | 3_3:-72107413 | None:intergenic |
| GGATCAATCAACTCAGCCTG+AGG | 0.624561 | 3_3:-72104871 | None:intergenic |
| TCCGAAGAAGATCAACCACT+TGG | 0.626562 | 3_3:+72104711 | Msa0470040:CDS |
| ACAACAACATCAGGAGTTCG+AGG | 0.628925 | 3_3:-72105000 | None:intergenic |
| GAGGCCCTATGACCATTGCT+GGG | 0.631385 | 3_3:-72105446 | None:intergenic |
| GATCAATCAACTCAGCCTGA+GGG | 0.632249 | 3_3:-72104870 | None:intergenic |
| GGTTACTATTAACCCAGCAA+TGG | 0.635018 | 3_3:+72105434 | Msa0470040:CDS |
| TTGATTGATCCTGCACTCAA+CGG | 0.644648 | 3_3:+72104883 | Msa0470040:CDS |
| GTTCGTTTCCTTCTCCATCG+TGG | 0.644846 | 3_3:+72104447 | Msa0470040:CDS |
| AGACTCGCAACAAAGGGGAA+GGG | 0.645475 | 3_3:-72107370 | None:intergenic |
| ACTGTTTCAGCTGTGGTATG+CGG | 0.647792 | 3_3:+72105350 | Msa0470040:intron |
| TCTCTGGGAGTTGCAACGAA+GGG | 0.653512 | 3_3:-72105939 | None:intergenic |
| CAACCAGACTCGCAACAAAG+GGG | 0.664458 | 3_3:-72107375 | None:intergenic |
| TATATATGTTACCAGGTGTG+CGG | 0.694634 | 3_3:+72106628 | Msa0470040:intron |
| CTTTAACAGTGTAACCACGA+TGG | 0.707935 | 3_3:-72104461 | None:intergenic |
| GTATGCGGTTTCGAAAACAT+TGG | 0.716031 | 3_3:+72105365 | Msa0470040:CDS |
| AGGAAAAGAAAGCCTCAAAG+CGG | 0.721177 | 3_3:-72107297 | None:intergenic |
| AAGGCAAATCTACTTGAACA+GGG | 0.722044 | 3_3:+72104772 | Msa0470040:CDS |
| AAGAAACTGTTAAAACAACG+AGG | 0.816297 | 3_3:-72107441 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTATTTATAATAGTTTTA+CGG | + | chr3_3:72106994-72107013 | Msa0470040:intron | 10.0% |
| !! | TAATAATCAAATCAAACATA+GGG | - | chr3_3:72104674-72104693 | None:intergenic | 15.0% |
| !! | ATAATAATCAAATCAAACAT+AGG | - | chr3_3:72104675-72104694 | None:intergenic | 15.0% |
| !!! | TATGTTTGATTTGATTATTA+TGG | + | chr3_3:72104674-72104693 | Msa0470040:intron | 15.0% |
| !! | ATTTATTACATGATTAATCA+TGG | - | chr3_3:72105290-72105309 | None:intergenic | 15.0% |
| !! | TATTTAATACATACAGAAAA+AGG | + | chr3_3:72106137-72106156 | Msa0470040:intron | 15.0% |
| !!! | AATTAAGTGTTTCTAAAATA+AGG | + | chr3_3:72106430-72106449 | Msa0470040:intron | 15.0% |
| !! | TATAAATGTAAATACAGAAA+TGG | - | chr3_3:72106554-72106573 | None:intergenic | 15.0% |
| !! | TATTAAATGTTTAATGAGTA+AGG | + | chr3_3:72107023-72107042 | Msa0470040:intron | 15.0% |
| !! | TAAAGAAAACAACATTGATA+TGG | + | chr3_3:72105413-72105432 | Msa0470040:CDS | 20.0% |
| !! | GTAATTAATTACCATTAATC+AGG | - | chr3_3:72105515-72105534 | None:intergenic | 20.0% |
| !! | CCATTACAATAAAACAAAAA+TGG | - | chr3_3:72105537-72105556 | None:intergenic | 20.0% |
| !!! | CCATTTTTGTTTTATTGTAA+TGG | + | chr3_3:72105534-72105553 | Msa0470040:intron | 20.0% |
| !! | TAAAATTCAATAAGCAACAA+TGG | - | chr3_3:72105638-72105657 | None:intergenic | 20.0% |
| !! | ATTATTAATCTTACTTCTCT+GGG | - | chr3_3:72105957-72105976 | None:intergenic | 20.0% |
| !! | AATTATTAATCTTACTTCTC+TGG | - | chr3_3:72105958-72105977 | None:intergenic | 20.0% |
| !! | GAAAAATTTCAACAATTTAG+AGG | + | chr3_3:72106179-72106198 | Msa0470040:intron | 20.0% |
| !!! | TGCACTTTTTAACATATATT+CGG | + | chr3_3:72106230-72106249 | Msa0470040:intron | 20.0% |
| !! | AAGTAATAACAATCAATCTA+AGG | + | chr3_3:72107073-72107092 | Msa0470040:intron | 20.0% |
| !! | TGATTTTGTAAGTTTAGCTA+GGG | - | chr3_3:72105078-72105097 | None:intergenic | 25.0% |
| ! | TCATATCAAACGAAAATAAC+AGG | - | chr3_3:72105595-72105614 | None:intergenic | 25.0% |
| ! | AACATTTCCAAATTCTACTT+TGG | + | chr3_3:72105783-72105802 | Msa0470040:CDS | 25.0% |
| ! | ACATTTCCAAATTCTACTTT+GGG | + | chr3_3:72105784-72105803 | Msa0470040:CDS | 25.0% |
| ! | ATTATGTTCCTAAATGAATG+CGG | + | chr3_3:72106002-72106021 | Msa0470040:intron | 25.0% |
| ! | AATTCAGTGCTAAAAATGAA+AGG | + | chr3_3:72106079-72106098 | Msa0470040:intron | 25.0% |
| ! | ATGTATTAAATAAACAACCC+TGG | - | chr3_3:72106129-72106148 | None:intergenic | 25.0% |
| !! | GAAACCATGTTTTACATATT+GGG | - | chr3_3:72106264-72106283 | None:intergenic | 25.0% |
| !! | TGAAACCATGTTTTACATAT+TGG | - | chr3_3:72106265-72106284 | None:intergenic | 25.0% |
| ! | TACAGAAGACATAAAAATAG+AGG | - | chr3_3:72106343-72106362 | None:intergenic | 25.0% |
| ! | ACGAAAAATTCAGTACAAAT+TGG | - | chr3_3:72106388-72106407 | None:intergenic | 25.0% |
| !! | ACATTTAAAGTTGCTATACT+TGG | - | chr3_3:72106456-72106475 | None:intergenic | 25.0% |
| ! | AAGTATAGCAACTTTAAATG+TGG | + | chr3_3:72106455-72106474 | Msa0470040:intron | 25.0% |
| ! | GGATATTAAACAACATTTGT+AGG | - | chr3_3:72106486-72106505 | None:intergenic | 25.0% |
| ! | TGTTTAATATCCGAAATCAT+AGG | + | chr3_3:72106494-72106513 | Msa0470040:intron | 25.0% |
| ! | TAACCATTAACCTATGATTT+CGG | - | chr3_3:72106507-72106526 | None:intergenic | 25.0% |
| !! | ATATCAGTTTTCCAAAGAAA+AGG | + | chr3_3:72106673-72106692 | Msa0470040:CDS | 25.0% |
| !!! | GTTGTTTTAACAGTTTCTTT+GGG | + | chr3_3:72107445-72107464 | Msa0470040:CDS | 25.0% |
| !!! | TTGTTTTAACAGTTTCTTTG+GGG | + | chr3_3:72107446-72107465 | Msa0470040:CDS | 25.0% |
| GGAGAGATTACAATTATTCA+AGG | + | chr3_3:72104753-72104772 | Msa0470040:CDS | 30.0% | |
| TCTTTGACATCATGATAGAA+GGG | - | chr3_3:72104850-72104869 | None:intergenic | 30.0% | |
| ! | GTGATTTTGTAAGTTTAGCT+AGG | - | chr3_3:72105079-72105098 | None:intergenic | 30.0% |
| ! | AGCAAGGACTAAATTGTTTT+TGG | + | chr3_3:72105156-72105175 | Msa0470040:intron | 30.0% |
| !!! | TAATGGTTTTGTTCCAATGT+CGG | + | chr3_3:72105242-72105261 | Msa0470040:intron | 30.0% |
| TACATGATTAATCATGGCAT+TGG | - | chr3_3:72105284-72105303 | None:intergenic | 30.0% | |
| GCAATTCTAAACCTGATTAA+TGG | + | chr3_3:72105501-72105520 | Msa0470040:CDS | 30.0% | |
| AATAAGCAACAATGGATGTT+GGG | - | chr3_3:72105630-72105649 | None:intergenic | 30.0% | |
| CAAATATGTTTGTGTTCAAG+AGG | + | chr3_3:72105702-72105721 | Msa0470040:intron | 30.0% | |
| ATAAGAATCCGCATTCATTT+AGG | - | chr3_3:72106013-72106032 | None:intergenic | 30.0% | |
| TCATCACTAATATTTGATCC+AGG | + | chr3_3:72106108-72106127 | Msa0470040:intron | 30.0% | |
| CATCACTAATATTTGATCCA+GGG | + | chr3_3:72106109-72106128 | Msa0470040:intron | 30.0% | |
| TTTAACATATATTCGGCTTC+TGG | + | chr3_3:72106237-72106256 | Msa0470040:intron | 30.0% | |
| GAAGACATAAAAATAGAGGA+AGG | - | chr3_3:72106339-72106358 | None:intergenic | 30.0% | |
| TATCCGAAATCATAGGTTAA+TGG | + | chr3_3:72106501-72106520 | Msa0470040:intron | 30.0% | |
| TGTCAACTATATATGTTACC+AGG | + | chr3_3:72106621-72106640 | Msa0470040:intron | 30.0% | |
| ! | TCTTTGGAAAACTGATATGT+AGG | - | chr3_3:72106671-72106690 | None:intergenic | 30.0% |
| TATGAAAGGGAAAAAGAAAG+TGG | + | chr3_3:72106906-72106925 | Msa0470040:intron | 30.0% | |
| ! | CAATCTAAGGTGTACATTAA+AGG | + | chr3_3:72107086-72107105 | Msa0470040:intron | 30.0% |
| !!! | TCATTTTTGCTTGCTGTTTT+TGG | + | chr3_3:72107178-72107197 | Msa0470040:intron | 30.0% |
| AAGAAACTGTTAAAACAACG+AGG | - | chr3_3:72107444-72107463 | None:intergenic | 30.0% | |
| !!! | CGTTGTTTTAACAGTTTCTT+TGG | + | chr3_3:72107444-72107463 | Msa0470040:CDS | 30.0% |
| !!! | TGTTTTAACAGTTTCTTTGG+GGG | + | chr3_3:72107447-72107466 | Msa0470040:CDS | 30.0% |
| GAGAAGAGAATGACTTACTT+GGG | - | chr3_3:72104500-72104519 | None:intergenic | 35.0% | |
| AGAGAAGAGAATGACTTACT+TGG | - | chr3_3:72104501-72104520 | None:intergenic | 35.0% | |
| AAGGCAAATCTACTTGAACA+GGG | + | chr3_3:72104772-72104791 | Msa0470040:CDS | 35.0% | |
| GTCTTTGACATCATGATAGA+AGG | - | chr3_3:72104851-72104870 | None:intergenic | 35.0% | |
| CTAGGGAGATACGTTTAATT+TGG | - | chr3_3:72105061-72105080 | None:intergenic | 35.0% | |
| !! | CCTTGCTATTGAAGATGTTA+TGG | - | chr3_3:72105143-72105162 | None:intergenic | 35.0% |
| CCATAACATCTTCAATAGCA+AGG | + | chr3_3:72105140-72105159 | Msa0470040:intron | 35.0% | |
| AACCATTAGCTAGCATGTTA+TGG | - | chr3_3:72105230-72105249 | None:intergenic | 35.0% | |
| ATAAGCAACAATGGATGTTG+GGG | - | chr3_3:72105629-72105648 | None:intergenic | 35.0% | |
| CAATAAGCAACAATGGATGT+TGG | - | chr3_3:72105631-72105650 | None:intergenic | 35.0% | |
| ATGTTTGTGTACCTGTATCA+AGG | - | chr3_3:72105768-72105787 | None:intergenic | 35.0% | |
| ! | TTCCAAATTCTACTTTGGGA+TGG | + | chr3_3:72105788-72105807 | Msa0470040:CDS | 35.0% |
| !! | TCCAAATTCTACTTTGGGAT+GGG | + | chr3_3:72105789-72105808 | Msa0470040:CDS | 35.0% |
| ATTCTCGTATGCCAGAATAT+GGG | - | chr3_3:72105839-72105858 | None:intergenic | 35.0% | |
| AATGAATGCGGATTCTTATC+TGG | + | chr3_3:72106014-72106033 | Msa0470040:intron | 35.0% | |
| CACTGAATTGAGTTTCAAAC+AGG | - | chr3_3:72106068-72106087 | None:intergenic | 35.0% | |
| TGGACCCAATATGTAAAACA+TGG | + | chr3_3:72106257-72106276 | Msa0470040:intron | 35.0% | |
| ! | TTTCACAGATGTTTTGCTAC+TGG | + | chr3_3:72106280-72106299 | Msa0470040:intron | 35.0% |
| ! | TTCACAGATGTTTTGCTACT+GGG | + | chr3_3:72106281-72106300 | Msa0470040:intron | 35.0% |
| TATATATGTTACCAGGTGTG+CGG | + | chr3_3:72106628-72106647 | Msa0470040:intron | 35.0% | |
| AACTGATATGTAGGCACATA+TGG | - | chr3_3:72106662-72106681 | None:intergenic | 35.0% | |
| GGGAATTGAATATACTCCTT+TGG | + | chr3_3:72106705-72106724 | Msa0470040:intron | 35.0% | |
| !! | TCCTTGTTTAGTTGATGACA+TGG | + | chr3_3:72106798-72106817 | Msa0470040:intron | 35.0% |
| CTAAGTTTCTTCACAAGCAT+AGG | - | chr3_3:72106833-72106852 | None:intergenic | 35.0% | |
| !! | CAAGCTTATCTTTTGGAGAA+GGG | - | chr3_3:72106878-72106897 | None:intergenic | 35.0% |
| !! | TAATGAGTAAGGACTAGCTT+AGG | + | chr3_3:72107034-72107053 | Msa0470040:intron | 35.0% |
| AAGGTGTACATTAAAGGATG+CGG | + | chr3_3:72107092-72107111 | Msa0470040:intron | 35.0% | |
| CAACTTCATTGTTAAGGTTG+CGG | + | chr3_3:72107115-72107134 | Msa0470040:intron | 35.0% | |
| ! | CTTCAGGTTACATAGCTTCA+TGG | + | chr3_3:72104421-72104440 | Msa0470040:CDS | 40.0% |
| CTTTAACAGTGTAACCACGA+TGG | - | chr3_3:72104464-72104483 | None:intergenic | 40.0% | |
| ACGGACATAGACACAAACAT+CGG | - | chr3_3:72104635-72104654 | None:intergenic | 40.0% | |
| ATCTTCTTCGGATCATCTAC+AGG | - | chr3_3:72104703-72104722 | None:intergenic | 40.0% | |
| ACCAAGTGGTTGATCTTCTT+CGG | - | chr3_3:72104715-72104734 | None:intergenic | 40.0% | |
| AACCACTTGGTTAAGCTTGA+AGG | + | chr3_3:72104724-72104743 | Msa0470040:CDS | 40.0% | |
| CAAGGCAAATCTACTTGAAC+AGG | + | chr3_3:72104771-72104790 | Msa0470040:CDS | 40.0% | |
| TTGATTGATCCTGCACTCAA+CGG | + | chr3_3:72104883-72104902 | Msa0470040:CDS | 40.0% | |
| AAGACAACACGTTTCAGTGA+TGG | - | chr3_3:72104943-72104962 | None:intergenic | 40.0% | |
| ! | ATGTTGTTGTTGACGAGACT+TGG | + | chr3_3:72105013-72105032 | Msa0470040:CDS | 40.0% |
| GTCCATAACATGCTAGCTAA+TGG | + | chr3_3:72105225-72105244 | Msa0470040:intron | 40.0% | |
| !! | GATTAATCATGGCATTGGCA+TGG | - | chr3_3:72105279-72105298 | None:intergenic | 40.0% |
| GTATGCGGTTTCGAAAACAT+TGG | + | chr3_3:72105365-72105384 | Msa0470040:CDS | 40.0% | |
| GGTTACTATTAACCCAGCAA+TGG | + | chr3_3:72105434-72105453 | Msa0470040:CDS | 40.0% | |
| ATTAACCCAGCAATGGTCAT+AGG | + | chr3_3:72105441-72105460 | Msa0470040:CDS | 40.0% | |
| TTAACCCAGCAATGGTCATA+GGG | + | chr3_3:72105442-72105461 | Msa0470040:CDS | 40.0% | |
| AGAGAGCTATTATCTGCAGA+AGG | - | chr3_3:72105740-72105759 | None:intergenic | 40.0% | |
| ACCCATCCCAAAGTAGAATT+TGG | - | chr3_3:72105793-72105812 | None:intergenic | 40.0% | |
| TGTTGCAAATGCCCATATTC+TGG | + | chr3_3:72105825-72105844 | Msa0470040:CDS | 40.0% | |
| CATTCTCGTATGCCAGAATA+TGG | - | chr3_3:72105840-72105859 | None:intergenic | 40.0% | |
| AGCTAGTGGAAGACATTGTT+TGG | + | chr3_3:72105864-72105883 | Msa0470040:CDS | 40.0% | |
| TTGCTACTGGGTAACTTGAA+TGG | + | chr3_3:72106293-72106312 | Msa0470040:intron | 40.0% | |
| ! | CAAAGAAAAGGCACGAGTTT+GGG | + | chr3_3:72106685-72106704 | Msa0470040:intron | 40.0% |
| GCCATGTCATCAACTAAACA+AGG | - | chr3_3:72106802-72106821 | None:intergenic | 40.0% | |
| !! | CCAAGCTTATCTTTTGGAGA+AGG | - | chr3_3:72106879-72106898 | None:intergenic | 40.0% |
| CCTTCTCCAAAAGATAAGCT+TGG | + | chr3_3:72106876-72106895 | Msa0470040:intron | 40.0% | |
| ATGCGGCAACTTCATTGTTA+AGG | + | chr3_3:72107109-72107128 | Msa0470040:intron | 40.0% | |
| !!! | GTTTTTGGCTAGTTTGCTGT+TGG | + | chr3_3:72107193-72107212 | Msa0470040:intron | 40.0% |
| !!! | GCATGTTTGGGAGGTTTTTT+CGG | + | chr3_3:72107226-72107245 | Msa0470040:CDS | 40.0% |
| AGGAAAAGAAAGCCTCAAAG+CGG | - | chr3_3:72107300-72107319 | None:intergenic | 40.0% | |
| AGCAACGTTGTGTGTGTAAC+TGG | + | chr3_3:72104396-72104415 | Msa0470040:CDS | 45.0% | |
| CATAGACACAAACATCGGAC+AGG | - | chr3_3:72104630-72104649 | None:intergenic | 45.0% | |
| GGGTCAAAACGTATGAAGCA+CGG | - | chr3_3:72104654-72104673 | None:intergenic | 45.0% | |
| TCCGAAGAAGATCAACCACT+TGG | + | chr3_3:72104711-72104730 | Msa0470040:CDS | 45.0% | |
| CACCTTCAAGCTTAACCAAG+TGG | - | chr3_3:72104729-72104748 | None:intergenic | 45.0% | |
| !! | GGTTAAGCTTGAAGGTGCTA+AGG | + | chr3_3:72104732-72104751 | Msa0470040:CDS | 45.0% |
| GCCTTTGATTCTGCTGTTCA+AGG | + | chr3_3:72104796-72104815 | Msa0470040:CDS | 45.0% | |
| GCCTTGAACAGCAGAATCAA+AGG | - | chr3_3:72104800-72104819 | None:intergenic | 45.0% | |
| TCATGATGTCAAAGACCCTC+AGG | + | chr3_3:72104855-72104874 | Msa0470040:CDS | 45.0% | |
| GATCAATCAACTCAGCCTGA+GGG | - | chr3_3:72104873-72104892 | None:intergenic | 45.0% | |
| ! | ACGTTTCAGTGATGGCGATT+TGG | - | chr3_3:72104935-72104954 | None:intergenic | 45.0% |
| ACAACAACATCAGGAGTTCG+AGG | - | chr3_3:72105003-72105022 | None:intergenic | 45.0% | |
| GTCTCGTCAACAACAACATC+AGG | - | chr3_3:72105012-72105031 | None:intergenic | 45.0% | |
| !! | CATGTTATGGACTAGCGCAT+TGG | - | chr3_3:72105217-72105236 | None:intergenic | 45.0% |
| CCACAGCTGAAACAGTCAAT+AGG | - | chr3_3:72105346-72105365 | None:intergenic | 45.0% | |
| ! | CCTATTGACTGTTTCAGCTG+TGG | + | chr3_3:72105343-72105362 | Msa0470040:intron | 45.0% |
| ACTGTTTCAGCTGTGGTATG+CGG | + | chr3_3:72105350-72105369 | Msa0470040:intron | 45.0% | |
| !! | TTTAGGACTGGTTGCAAGAG+AGG | - | chr3_3:72105468-72105487 | None:intergenic | 45.0% |
| TTGCAGCAGCACTTGTGTTT+AGG | - | chr3_3:72105485-72105504 | None:intergenic | 45.0% | |
| CTCTCTCACTTCCTTGATAC+AGG | + | chr3_3:72105754-72105773 | Msa0470040:intron | 45.0% | |
| TACGAGAATGCTTCAGCTAG+TGG | + | chr3_3:72105850-72105869 | Msa0470040:CDS | 45.0% | |
| ! | CCAAACTCGTGCCTTTTCTT+TGG | - | chr3_3:72106687-72106706 | None:intergenic | 45.0% |
| ! | CCAAAGAAAAGGCACGAGTT+TGG | + | chr3_3:72106684-72106703 | Msa0470040:intron | 45.0% |
| ! | TCCTTTGGAAGTGAGCATCA+AGG | + | chr3_3:72106720-72106739 | Msa0470040:intron | 45.0% |
| TCCTTGATGCTCACTTCCAA+AGG | - | chr3_3:72106724-72106743 | None:intergenic | 45.0% | |
| ! | CACACGCCAAGCTTATCTTT+TGG | - | chr3_3:72106885-72106904 | None:intergenic | 45.0% |
| AGCTTGGCGTGTGATATGAA+AGG | + | chr3_3:72106892-72106911 | Msa0470040:intron | 45.0% | |
| GCTTGGCGTGTGATATGAAA+GGG | + | chr3_3:72106893-72106912 | Msa0470040:intron | 45.0% | |
| TTAAGGTTGCGGCTTTCTTG+TGG | + | chr3_3:72107126-72107145 | Msa0470040:intron | 45.0% | |
| !!! | TGTTTGGGAGGTTTTTTCGG+CGG | + | chr3_3:72107229-72107248 | Msa0470040:CDS | 45.0% |
| !! | CTGTCAGCTTGTTGTTTCTG+TGG | + | chr3_3:72107261-72107280 | Msa0470040:CDS | 45.0% |
| !! | GTTGTTTCTGTGGTAAGTGC+TGG | + | chr3_3:72107271-72107290 | Msa0470040:CDS | 45.0% |
| ! | TTGAGGCTTTCTTTTCCTGC+TGG | + | chr3_3:72107302-72107321 | Msa0470040:CDS | 45.0% |
| ! | TGAGGCTTTCTTTTCCTGCT+GGG | + | chr3_3:72107303-72107322 | Msa0470040:CDS | 45.0% |
| !!! | TGCTGTCTTGCTTTTTCAGC+TGG | + | chr3_3:72107339-72107358 | Msa0470040:CDS | 45.0% |
| !!! | TGTCTTGCTTTTTCAGCTGG+TGG | + | chr3_3:72107342-72107361 | Msa0470040:CDS | 45.0% |
| ACAACACAATCCGAGCATAG+AGG | - | chr3_3:72107416-72107435 | None:intergenic | 45.0% | |
| GTTCGTTTCCTTCTCCATCG+TGG | + | chr3_3:72104447-72104466 | Msa0470040:CDS | 50.0% | |
| CAGTGTAACCACGATGGAGA+AGG | - | chr3_3:72104458-72104477 | None:intergenic | 50.0% | |
| TGACTTACTTGGGTCGCGAA+CGG | - | chr3_3:72104490-72104509 | None:intergenic | 50.0% | |
| TCTGCTGTTCAAGGCTGTCA+AGG | + | chr3_3:72104805-72104824 | Msa0470040:CDS | 50.0% | |
| GGATCAATCAACTCAGCCTG+AGG | - | chr3_3:72104874-72104893 | None:intergenic | 50.0% | |
| !! | TTGAGAGTACCGTTGAGTGC+AGG | - | chr3_3:72104895-72104914 | None:intergenic | 50.0% |
| ! | CATTGGCTGAAGAAGCTGCA+TGG | + | chr3_3:72105382-72105401 | Msa0470040:CDS | 50.0% |
| ! | GCAGCACTTGTGTTTAGGAC+TGG | - | chr3_3:72105480-72105499 | None:intergenic | 50.0% |
| ! | TCTCTGGGAGTTGCAACGAA+GGG | - | chr3_3:72105942-72105961 | None:intergenic | 50.0% |
| ! | TTCTCTGGGAGTTGCAACGA+AGG | - | chr3_3:72105943-72105962 | None:intergenic | 50.0% |
| !! | GCTAGTTTGCTGTTGGCTTC+TGG | + | chr3_3:72107200-72107219 | Msa0470040:intron | 50.0% |
| !! | AGTTTGCTGTTGGCTTCTGG+AGG | + | chr3_3:72107203-72107222 | Msa0470040:intron | 50.0% |
| !! | GTTTGCTGTTGGCTTCTGGA+GGG | + | chr3_3:72107204-72107223 | Msa0470040:intron | 50.0% |
| ! | GCTTTCTTTTCCTGCTGGGA+GGG | + | chr3_3:72107307-72107326 | Msa0470040:CDS | 50.0% |
| AGACTCGCAACAAAGGGGAA+GGG | - | chr3_3:72107373-72107392 | None:intergenic | 50.0% | |
| CAACCAGACTCGCAACAAAG+GGG | - | chr3_3:72107378-72107397 | None:intergenic | 50.0% | |
| GCAACCAGACTCGCAACAAA+GGG | - | chr3_3:72107379-72107398 | None:intergenic | 50.0% | |
| AGCAACCAGACTCGCAACAA+AGG | - | chr3_3:72107380-72107399 | None:intergenic | 50.0% | |
| TTTGTTGCGAGTCTGGTTGC+TGG | + | chr3_3:72107379-72107398 | Msa0470040:CDS | 50.0% | |
| TTGTTGCGAGTCTGGTTGCT+GGG | + | chr3_3:72107380-72107399 | Msa0470040:CDS | 50.0% | |
| GTGTGTGTAACTGGCGCTTC+AGG | + | chr3_3:72104405-72104424 | Msa0470040:CDS | 55.0% | |
| GGCACACACTTTGCCGACAT+TGG | - | chr3_3:72105258-72105277 | None:intergenic | 55.0% | |
| GAGGCCCTATGACCATTGCT+GGG | - | chr3_3:72105449-72105468 | None:intergenic | 55.0% | |
| AGAGGCCCTATGACCATTGC+TGG | - | chr3_3:72105450-72105469 | None:intergenic | 55.0% | |
| ATGAAGAGCAGCAGCTGCAC+AGG | - | chr3_3:72107162-72107181 | None:intergenic | 55.0% | |
| ! | TGGCTTCTGGAGGGCATGTT+TGG | + | chr3_3:72107213-72107232 | Msa0470040:CDS | 55.0% |
| ! | GGCTTCTGGAGGGCATGTTT+GGG | + | chr3_3:72107214-72107233 | Msa0470040:CDS | 55.0% |
| ! | TTCTGGAGGGCATGTTTGGG+AGG | + | chr3_3:72107217-72107236 | Msa0470040:CDS | 55.0% |
| ! | GGCTTTCTTTTCCTGCTGGG+AGG | + | chr3_3:72107306-72107325 | Msa0470040:CDS | 55.0% |
| AGCAAGAAAACCCTCCCAGC+AGG | - | chr3_3:72107320-72107339 | None:intergenic | 55.0% | |
| CAGACTCGCAACAAAGGGGA+AGG | - | chr3_3:72107374-72107393 | None:intergenic | 55.0% | |
| CTTCCCCTTTGTTGCGAGTC+TGG | + | chr3_3:72107372-72107391 | Msa0470040:CDS | 55.0% | |
| CAGCAAGGGTCCTCTATGCT+CGG | + | chr3_3:72107403-72107422 | Msa0470040:CDS | 55.0% | |
| CTTACTTGGGTCGCGAACGG+TGG | - | chr3_3:72104487-72104506 | None:intergenic | 60.0% | |
| CGCAACAGCAGCAGCAGAAG+AGG | - | chr3_3:72104968-72104987 | None:intergenic | 60.0% | |
| TGGCTTATCGTCCGCACACC+TGG | - | chr3_3:72106642-72106661 | None:intergenic | 60.0% | |
| !! | AAGTGCTGGCAGCCGCTTTG+AGG | + | chr3_3:72107285-72107304 | Msa0470040:CDS | 60.0% |
| AGTCTGGTTGCTGGGCAGCA+AGG | + | chr3_3:72107388-72107407 | Msa0470040:CDS | 60.0% | |
| GTCTGGTTGCTGGGCAGCAA+GGG | + | chr3_3:72107389-72107408 | Msa0470040:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 72104390 | 72107483 | 72104390 | ID=Msa0470040;Name=Msa0470040 |
| chr3_3 | mRNA | 72104390 | 72107483 | 72104390 | ID=Msa0470040-mRNA-1;Parent=Msa0470040;Name=Msa0470040-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|0.83|1|1|6|0|386 |
| chr3_3 | exon | 72104390 | 72104501 | 72104390 | ID=Msa0470040-mRNA-1:exon:17838;Parent=Msa0470040-mRNA-1 |
| chr3_3 | exon | 72104707 | 72105068 | 72104707 | ID=Msa0470040-mRNA-1:exon:17839;Parent=Msa0470040-mRNA-1 |
| chr3_3 | exon | 72105360 | 72105522 | 72105360 | ID=Msa0470040-mRNA-1:exon:17840;Parent=Msa0470040-mRNA-1 |
| chr3_3 | exon | 72105776 | 72105962 | 72105776 | ID=Msa0470040-mRNA-1:exon:17841;Parent=Msa0470040-mRNA-1 |
| chr3_3 | exon | 72106643 | 72106700 | 72106643 | ID=Msa0470040-mRNA-1:exon:17842;Parent=Msa0470040-mRNA-1 |
| chr3_3 | exon | 72107205 | 72107483 | 72107205 | ID=Msa0470040-mRNA-1:exon:17843;Parent=Msa0470040-mRNA-1 |
| chr3_3 | CDS | 72104390 | 72104501 | 72104390 | ID=Msa0470040-mRNA-1:cds;Parent=Msa0470040-mRNA-1 |
| chr3_3 | CDS | 72104707 | 72105068 | 72104707 | ID=Msa0470040-mRNA-1:cds;Parent=Msa0470040-mRNA-1 |
| chr3_3 | CDS | 72105360 | 72105522 | 72105360 | ID=Msa0470040-mRNA-1:cds;Parent=Msa0470040-mRNA-1 |
| chr3_3 | CDS | 72105776 | 72105962 | 72105776 | ID=Msa0470040-mRNA-1:cds;Parent=Msa0470040-mRNA-1 |
| chr3_3 | CDS | 72106643 | 72106700 | 72106643 | ID=Msa0470040-mRNA-1:cds;Parent=Msa0470040-mRNA-1 |
| chr3_3 | CDS | 72107205 | 72107483 | 72107205 | ID=Msa0470040-mRNA-1:cds;Parent=Msa0470040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
