Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504480 | XP_013460238.1 | 99.020 | 204 | 1 | 1 | 1 | 204 | 1 | 203 | 1.49e-142 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504480 | sp|Q8LDP4|CP19D_ARATH | 87.255 | 204 | 23 | 1 | 1 | 204 | 1 | 201 | 5.35e-128 | 361 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504480 | I3S3K3 | 99.020 | 204 | 1 | 1 | 1 | 204 | 1 | 203 | 7.12e-143 | 405 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029310 | Msa0504480 | 0.803533 | 3.331265e-49 | -8.615850e-47 |
| Msa0063890 | Msa0504480 | 0.805709 | 1.171285e-49 | -8.615850e-47 |
| Msa0101440 | Msa0504480 | 0.807787 | 4.262298e-50 | -8.615850e-47 |
| Msa0166560 | Msa0504480 | 0.801632 | 8.216283e-49 | -8.615850e-47 |
| Msa0211150 | Msa0504480 | 0.817344 | 3.463006e-52 | -8.615850e-47 |
| Msa0466400 | Msa0504480 | 0.802333 | 5.895807e-49 | -8.615850e-47 |
| Msa0304510 | Msa0504480 | 0.813989 | 1.935802e-51 | -8.615850e-47 |
| Msa0504480 | Msa0569200 | 0.803642 | 3.161711e-49 | -8.615850e-47 |
| Msa0504480 | Msa0677410 | 0.812744 | 3.634201e-51 | -8.615850e-47 |
| Msa0504480 | Msa0725050 | 0.803365 | 3.609931e-49 | -8.615850e-47 |
| Msa0504480 | Msa0765910 | 0.813692 | 2.250644e-51 | -8.615850e-47 |
| Msa0504480 | Msa0770720 | 0.808981 | 2.371175e-50 | -8.615850e-47 |
| Msa0504480 | Msa0876190 | 0.826327 | 2.883187e-54 | -8.615850e-47 |
| Msa0504480 | Msa1276660 | 0.801365 | 9.320466e-49 | -8.615850e-47 |
| Msa0504480 | Msa1314730 | 0.801414 | 9.104515e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504480 | MtrunA17_Chr3g0104751 | 99.020 | 204 | 1 | 1 | 1 | 204 | 1 | 203 | 1.37e-146 | 405 |
| Msa0504480 | MtrunA17_Chr3g0113441 | 82.955 | 176 | 30 | 0 | 27 | 202 | 56 | 231 | 2.91e-108 | 310 |
| Msa0504480 | MtrunA17_Chr4g0038431 | 67.647 | 170 | 55 | 0 | 33 | 202 | 2 | 171 | 1.27e-83 | 245 |
| Msa0504480 | MtrunA17_Chr7g0274841 | 68.862 | 167 | 52 | 0 | 36 | 202 | 5 | 171 | 2.67e-83 | 244 |
| Msa0504480 | MtrunA17_Chr3g0145501 | 67.665 | 167 | 54 | 0 | 36 | 202 | 13 | 179 | 1.08e-79 | 236 |
| Msa0504480 | MtrunA17_Chr4g0037281 | 58.500 | 200 | 80 | 3 | 7 | 203 | 17 | 216 | 4.75e-79 | 235 |
| Msa0504480 | MtrunA17_Chr1g0193711 | 67.039 | 179 | 49 | 3 | 29 | 204 | 78 | 249 | 7.70e-78 | 233 |
| Msa0504480 | MtrunA17_Chr7g0270991 | 59.788 | 189 | 64 | 3 | 21 | 204 | 78 | 259 | 6.52e-75 | 226 |
| Msa0504480 | MtrunA17_Chr1g0213971 | 63.842 | 177 | 53 | 3 | 32 | 204 | 74 | 243 | 1.36e-72 | 220 |
| Msa0504480 | MtrunA17_Chr7g0260441 | 65.269 | 167 | 57 | 1 | 37 | 202 | 9 | 175 | 1.23e-70 | 226 |
| Msa0504480 | MtrunA17_Chr8g0374621 | 59.763 | 169 | 66 | 2 | 36 | 202 | 5 | 173 | 2.71e-64 | 202 |
| Msa0504480 | MtrunA17_Chr4g0045321 | 57.310 | 171 | 69 | 3 | 36 | 203 | 5 | 174 | 6.02e-62 | 196 |
| Msa0504480 | MtrunA17_Chr8g0353571 | 56.548 | 168 | 69 | 3 | 37 | 202 | 20 | 185 | 1.39e-59 | 184 |
| Msa0504480 | MtrunA17_Chr3g0138061 | 50.847 | 177 | 82 | 2 | 30 | 201 | 1 | 177 | 1.50e-49 | 172 |
| Msa0504480 | MtrunA17_Chr1g0149061 | 52.907 | 172 | 79 | 2 | 31 | 201 | 3 | 173 | 2.66e-49 | 171 |
| Msa0504480 | MtrunA17_Chr2g0321111 | 48.667 | 150 | 64 | 5 | 49 | 196 | 471 | 609 | 2.98e-35 | 130 |
| Msa0504480 | MtrunA17_Chr7g0266721 | 49.624 | 133 | 55 | 4 | 49 | 180 | 19 | 140 | 6.25e-35 | 121 |
| Msa0504480 | MtrunA17_Chr8g0351571 | 48.529 | 136 | 58 | 4 | 47 | 181 | 8 | 132 | 5.09e-31 | 111 |
| Msa0504480 | MtrunA17_Chr5g0401141 | 47.761 | 134 | 58 | 4 | 49 | 181 | 354 | 476 | 4.80e-28 | 110 |
| Msa0504480 | MtrunA17_Chr2g0288371 | 41.333 | 150 | 65 | 8 | 49 | 190 | 22 | 156 | 1.12e-21 | 92.0 |
| Msa0504480 | MtrunA17_Chr3g0122871 | 60.317 | 63 | 25 | 0 | 128 | 190 | 56 | 118 | 1.47e-21 | 85.5 |
| Msa0504480 | MtrunA17_Chr6g0484281 | 37.342 | 158 | 78 | 7 | 49 | 196 | 10 | 156 | 3.90e-19 | 84.7 |
| Msa0504480 | MtrunA17_Chr8g0357591 | 36.709 | 158 | 79 | 7 | 49 | 196 | 10 | 156 | 5.63e-18 | 81.6 |
| Msa0504480 | MtrunA17_Chr1g0199071 | 32.237 | 152 | 84 | 7 | 49 | 198 | 89 | 223 | 2.41e-13 | 66.2 |
| Msa0504480 | MtrunA17_Chr2g0305071 | 29.487 | 156 | 78 | 6 | 49 | 182 | 92 | 237 | 2.09e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0504480 | AT2G29960.1 | 87.255 | 204 | 23 | 1 | 1 | 204 | 1 | 201 | 5.44e-129 | 361 |
| Msa0504480 | AT2G29960.3 | 87.255 | 204 | 23 | 1 | 1 | 204 | 1 | 201 | 5.44e-129 | 361 |
| Msa0504480 | AT5G58710.1 | 90.217 | 184 | 18 | 0 | 21 | 204 | 21 | 204 | 4.00e-124 | 349 |
| Msa0504480 | AT2G29960.2 | 83.824 | 204 | 20 | 2 | 1 | 204 | 1 | 191 | 1.48e-120 | 340 |
| Msa0504480 | AT3G55920.1 | 68.981 | 216 | 48 | 1 | 8 | 204 | 13 | 228 | 4.26e-104 | 299 |
| Msa0504480 | AT4G38740.1 | 69.461 | 167 | 51 | 0 | 36 | 202 | 5 | 171 | 1.59e-84 | 248 |
| Msa0504480 | AT2G21130.1 | 70.060 | 167 | 50 | 0 | 36 | 202 | 6 | 172 | 3.21e-84 | 247 |
| Msa0504480 | AT2G16600.1 | 69.461 | 167 | 51 | 0 | 36 | 202 | 6 | 172 | 1.30e-83 | 245 |
| Msa0504480 | AT4G34960.1 | 61.000 | 200 | 73 | 3 | 5 | 203 | 21 | 216 | 1.35e-82 | 245 |
| Msa0504480 | AT3G56070.1 | 69.461 | 167 | 51 | 0 | 36 | 202 | 5 | 171 | 2.68e-82 | 242 |
| Msa0504480 | AT3G56070.2 | 69.461 | 167 | 51 | 0 | 36 | 202 | 5 | 171 | 2.68e-82 | 242 |
| Msa0504480 | AT3G62030.3 | 62.827 | 191 | 59 | 3 | 19 | 204 | 74 | 257 | 2.10e-79 | 238 |
| Msa0504480 | AT3G62030.1 | 66.292 | 178 | 52 | 2 | 28 | 204 | 88 | 258 | 8.03e-79 | 236 |
| Msa0504480 | AT3G62030.2 | 66.292 | 178 | 52 | 2 | 28 | 204 | 141 | 311 | 3.61e-78 | 236 |
| Msa0504480 | AT5G13120.1 | 62.032 | 187 | 60 | 3 | 22 | 204 | 77 | 256 | 3.66e-78 | 235 |
| Msa0504480 | AT5G13120.2 | 62.032 | 187 | 60 | 3 | 22 | 204 | 73 | 252 | 3.84e-78 | 234 |
| Msa0504480 | AT4G34870.1 | 65.269 | 167 | 58 | 0 | 36 | 202 | 5 | 171 | 7.66e-76 | 226 |
| Msa0504480 | AT3G63400.2 | 63.372 | 172 | 62 | 1 | 31 | 201 | 3 | 174 | 4.54e-69 | 216 |
| Msa0504480 | AT3G63400.3 | 63.372 | 172 | 62 | 1 | 31 | 201 | 3 | 174 | 4.25e-67 | 216 |
| Msa0504480 | AT3G63400.4 | 63.372 | 172 | 62 | 1 | 31 | 201 | 3 | 174 | 4.25e-67 | 216 |
| Msa0504480 | AT3G63400.1 | 63.372 | 172 | 62 | 1 | 31 | 201 | 3 | 174 | 4.25e-67 | 216 |
| Msa0504480 | AT2G15790.1 | 60.819 | 171 | 65 | 2 | 35 | 203 | 4 | 174 | 3.00e-66 | 207 |
| Msa0504480 | AT4G34960.2 | 60.645 | 155 | 57 | 2 | 5 | 159 | 21 | 171 | 6.37e-63 | 193 |
| Msa0504480 | AT2G16600.2 | 58.084 | 167 | 48 | 1 | 36 | 202 | 6 | 150 | 8.85e-62 | 189 |
| Msa0504480 | AT2G38730.1 | 56.548 | 168 | 69 | 3 | 37 | 202 | 34 | 199 | 4.36e-59 | 184 |
| Msa0504480 | AT3G22920.1 | 52.047 | 171 | 70 | 5 | 36 | 202 | 5 | 167 | 1.15e-49 | 161 |
| Msa0504480 | AT4G32420.1 | 51.163 | 172 | 83 | 1 | 31 | 201 | 3 | 174 | 1.59e-46 | 164 |
| Msa0504480 | AT4G32420.5 | 51.163 | 172 | 83 | 1 | 31 | 201 | 3 | 174 | 1.59e-46 | 164 |
| Msa0504480 | AT4G32420.3 | 51.163 | 172 | 83 | 1 | 31 | 201 | 3 | 174 | 1.59e-46 | 164 |
| Msa0504480 | AT4G32420.6 | 51.163 | 172 | 83 | 1 | 31 | 201 | 3 | 174 | 1.59e-46 | 164 |
| Msa0504480 | AT4G32420.4 | 51.534 | 163 | 78 | 1 | 31 | 192 | 3 | 165 | 7.23e-44 | 156 |
| Msa0504480 | AT2G36130.1 | 49.624 | 133 | 55 | 4 | 49 | 180 | 19 | 140 | 3.55e-35 | 122 |
| Msa0504480 | AT3G44600.1 | 52.239 | 134 | 52 | 4 | 49 | 181 | 485 | 607 | 5.59e-35 | 130 |
| Msa0504480 | AT1G01940.1 | 49.265 | 136 | 57 | 4 | 47 | 181 | 8 | 132 | 9.16e-32 | 113 |
| Msa0504480 | AT5G67530.1 | 43.137 | 153 | 74 | 5 | 49 | 199 | 353 | 494 | 7.37e-28 | 110 |
| Msa0504480 | AT4G33060.1 | 42.537 | 134 | 62 | 6 | 49 | 180 | 22 | 142 | 3.39e-25 | 102 |
| Msa0504480 | AT1G53720.2 | 36.076 | 158 | 80 | 7 | 49 | 196 | 10 | 156 | 2.99e-18 | 82.0 |
| Msa0504480 | AT1G53720.1 | 36.076 | 158 | 80 | 7 | 49 | 196 | 10 | 156 | 4.81e-18 | 82.0 |
Find 67 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCTCATTGGTTGATTAAT+TGG | 0.105252 | 3_4:+49036542 | None:intergenic |
| AGCTATATACTTCATAAATT+TGG | 0.171673 | 3_4:-49032814 | Msa0504480:three_prime_UTR |
| GTTTGCGTGGTTTGGACTAA+TGG | 0.276869 | 3_4:+49036494 | None:intergenic |
| ATCTCATTGGTTGATTAATT+GGG | 0.308399 | 3_4:+49036543 | None:intergenic |
| TACTTTGATGTTCAGATTGA+TGG | 0.308620 | 3_4:-49036089 | Msa0504480:CDS |
| GTTATCATAAAATTTGTAGA+AGG | 0.345740 | 3_4:-49033039 | Msa0504480:three_prime_UTR |
| GAGCTTCTGTTTGCGTGGTT+TGG | 0.347916 | 3_4:+49036486 | None:intergenic |
| TATCAAATTATTAGGGGAAA+AGG | 0.349692 | 3_4:-49034928 | Msa0504480:intron |
| TGGGAACCTGGATAAGAGAT+AGG | 0.359302 | 3_4:+49036331 | None:intergenic |
| AATTGTGAGCCATTGGTATC+AGG | 0.377359 | 3_4:+49034583 | None:intergenic |
| TTTCCAGGTCGTGTTGTAAT+AGG | 0.378640 | 3_4:-49035476 | Msa0504480:intron |
| ATCAAATTATTAGGGGAAAA+GGG | 0.388380 | 3_4:-49034927 | Msa0504480:intron |
| GACTCAGTATCACTGTATTT+AGG | 0.401321 | 3_4:+49036464 | None:intergenic |
| TTCATTTCCATTGCCCCTGC+AGG | 0.401339 | 3_4:-49033171 | Msa0504480:three_prime_UTR |
| GAAAAGGGGACTGGTAAATC+TGG | 0.408683 | 3_4:-49034912 | Msa0504480:CDS |
| GCCTTGTTCGTAAACCCTCT+TGG | 0.416638 | 3_4:+49036565 | None:intergenic |
| TTTGCGTGGTTTGGACTAAT+GGG | 0.418017 | 3_4:+49036495 | None:intergenic |
| AGCAATCACAACCTTGCTCT+TGG | 0.426225 | 3_4:+49033266 | None:intergenic |
| CAGATTGATGGAAAGGATGC+AGG | 0.430835 | 3_4:-49036077 | Msa0504480:intron |
| TTTACACATGGCAATGGAAT+GGG | 0.433694 | 3_4:-49034819 | Msa0504480:CDS |
| TTAATTAATGCAGGCAAAGA+AGG | 0.437139 | 3_4:-49036147 | Msa0504480:intron |
| TGGAAAGGTGCTTTCGGGAA+TGG | 0.451229 | 3_4:-49033334 | Msa0504480:CDS |
| ATGGGCGGAGAATCAATTTA+CGG | 0.458516 | 3_4:-49034801 | Msa0504480:CDS |
| GAAGGCGAAAGAGGATTTGA+AGG | 0.459280 | 3_4:-49036129 | Msa0504480:CDS |
| GCAATCACAACCTTGCTCTT+GGG | 0.462284 | 3_4:+49033267 | None:intergenic |
| AAGCTAAAGCACACTGGTCC+AGG | 0.474279 | 3_4:-49034753 | Msa0504480:intron |
| CGGAACCCTATCTCTTATCC+AGG | 0.475115 | 3_4:-49036337 | Msa0504480:intron |
| AAGTAGTCCTGCAGGGGCAA+TGG | 0.492119 | 3_4:+49033164 | None:intergenic |
| TAAAGCTAGGGATGATCCTA+TGG | 0.493456 | 3_4:+49034859 | None:intergenic |
| ACTCAACTGCCATGTTCACT+TGG | 0.495402 | 3_4:+49033012 | None:intergenic |
| CCTCCTTGGATCATAAAGCT+AGG | 0.503079 | 3_4:+49034846 | None:intergenic |
| ATGAGAGGATGCACTTATAG+AGG | 0.504255 | 3_4:+49033228 | None:intergenic |
| TCCAAGAGGGTTTACGAACA+AGG | 0.507548 | 3_4:-49036566 | Msa0504480:five_prime_UTR |
| AACTTCCGAGCTCTTTGCAC+AGG | 0.508572 | 3_4:-49035329 | Msa0504480:intron |
| CTATGATCGATCTCAGTGTT+CGG | 0.514823 | 3_4:+49036428 | None:intergenic |
| GAGCTACCTTTGTAATGAAG+AGG | 0.529680 | 3_4:+49034885 | None:intergenic |
| GCAGGCAAAGAAGGCGAAAG+AGG | 0.535933 | 3_4:-49036138 | Msa0504480:intron |
| ATCCCTAGCTTTATGATCCA+AGG | 0.540748 | 3_4:-49034849 | Msa0504480:CDS |
| TTACAACTGTGACAACTAGC+TGG | 0.546464 | 3_4:-49034555 | Msa0504480:intron |
| CTCCTTGGATCATAAAGCTA+GGG | 0.549400 | 3_4:+49034847 | None:intergenic |
| TGATGTTCAGATTGATGGAA+AGG | 0.550732 | 3_4:-49036084 | Msa0504480:CDS |
| GTAACATCTTCAACATATTG+TGG | 0.551510 | 3_4:+49033198 | None:intergenic |
| GCTCACCTGTGCAAAGAGCT+CGG | 0.558048 | 3_4:+49035324 | None:intergenic |
| GAAAACTAAAATTCTCCAAG+AGG | 0.560282 | 3_4:-49036580 | None:intergenic |
| TCAAATTATTAGGGGAAAAG+GGG | 0.566883 | 3_4:-49034926 | Msa0504480:intron |
| CATGTGTAAAATCACCTCCT+TGG | 0.569371 | 3_4:+49034832 | None:intergenic |
| TTATTAGGGGAAAAGGGGAC+TGG | 0.573787 | 3_4:-49034921 | Msa0504480:intron |
| GGGAACCTGGATAAGAGATA+GGG | 0.575131 | 3_4:+49036332 | None:intergenic |
| CTGTCGATAGGTTGGACGGA+AGG | 0.581130 | 3_4:-49033368 | Msa0504480:intron |
| AAAACTAAAATTCTCCAAGA+GGG | 0.583381 | 3_4:-49036579 | None:intergenic |
| GTTTACAAGATTGAAGCTGA+AGG | 0.584212 | 3_4:-49033306 | Msa0504480:CDS |
| GAAGGAAATCCAAGTGAACA+TGG | 0.589562 | 3_4:-49033021 | Msa0504480:three_prime_UTR |
| ACAAAGGTAGCTCATTCCAT+AGG | 0.592512 | 3_4:-49034875 | Msa0504480:CDS |
| AGCAAAGCAAAACAAACCGA+TGG | 0.605424 | 3_4:-49036400 | Msa0504480:exon |
| AAGTGGAACTCCCAAGAGCA+AGG | 0.609812 | 3_4:-49033277 | Msa0504480:CDS |
| AAGGTTGTGATTGCTGATAG+TGG | 0.613906 | 3_4:-49033258 | Msa0504480:CDS |
| TTTAGGAGCTTCTGTTTGCG+TGG | 0.617265 | 3_4:+49036481 | None:intergenic |
| GGAAAGCCTCTTCATTACAA+AGG | 0.618832 | 3_4:-49034891 | Msa0504480:CDS |
| ATATCTGTCGATAGGTTGGA+CGG | 0.625910 | 3_4:-49033372 | Msa0504480:intron |
| ACACATGGCAATGGAATGGG+CGG | 0.629266 | 3_4:-49034816 | Msa0504480:CDS |
| GAAGCTGAAGGAAATCAAAG+TGG | 0.632748 | 3_4:-49033294 | Msa0504480:CDS |
| TTTGAAGGAAGTGACAAACA+AGG | 0.637543 | 3_4:-49036114 | Msa0504480:CDS |
| AACTTCAAGCTAAAGCACAC+TGG | 0.639521 | 3_4:-49034759 | Msa0504480:CDS |
| AATGCTGGTCCTGATACCAA+TGG | 0.648723 | 3_4:-49034592 | Msa0504480:CDS |
| TAAGAGATAGGGTTCCGAAG+AGG | 0.697626 | 3_4:+49036343 | None:intergenic |
| CCTAGCTTTATGATCCAAGG+AGG | 0.717819 | 3_4:-49034846 | Msa0504480:CDS |
| TATTGTGGTTGAGATATGAG+AGG | 0.729155 | 3_4:+49033213 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTTGTATCAAATTATT+AGG | - | chr3_4:49034394-49034413 | Msa0504480:intron | 10.0% |
| !! | TTATTTGTATCAAATTATTA+GGG | - | chr3_4:49034395-49034414 | Msa0504480:intron | 10.0% |
| !!! | TTTTTTATAAATATACACAA+TGG | + | chr3_4:49035202-49035221 | None:intergenic | 10.0% |
| !!! | ATTTTTTTGTTAATTAATGC+AGG | - | chr3_4:49033174-49033193 | Msa0504480:three_prime_UTR | 15.0% |
| !! | TAATTTGGTTAATTACAATT+TGG | - | chr3_4:49033484-49033503 | Msa0504480:intron | 15.0% |
| !!! | TAATTACAATTTGGTTATTT+TGG | - | chr3_4:49033493-49033512 | Msa0504480:intron | 15.0% |
| !! | AACCAAATAACAAATTTATT+GGG | + | chr3_4:49033596-49033615 | None:intergenic | 15.0% |
| !! | TAACCAAATAACAAATTTAT+TGG | + | chr3_4:49033597-49033616 | None:intergenic | 15.0% |
| !! | TATTAAATGTTATTAGGAAA+TGG | + | chr3_4:49034287-49034306 | None:intergenic | 15.0% |
| !! | TCAGTATATTAAATGTTATT+AGG | + | chr3_4:49034293-49034312 | None:intergenic | 15.0% |
| !! | TATTTGTATCAAATTATTAG+GGG | - | chr3_4:49034396-49034415 | Msa0504480:intron | 15.0% |
| !! | GATCAAGATAAAGAAAAAAT+GGG | + | chr3_4:49033021-49033040 | None:intergenic | 20.0% |
| !! | AGATCAAGATAAAGAAAAAA+TGG | + | chr3_4:49033022-49033041 | None:intergenic | 20.0% |
| !! | TATGAATTTGTAATTGTGTT+TGG | - | chr3_4:49033135-49033154 | Msa0504480:three_prime_UTR | 20.0% |
| !!! | TTAAGTTCATTATTTTCTGT+TGG | - | chr3_4:49033315-49033334 | Msa0504480:CDS | 20.0% |
| !!! | TTTTATTTCGTTAGTCAATT+TGG | - | chr3_4:49033460-49033479 | Msa0504480:intron | 20.0% |
| !!! | TACCCAATAAATTTGTTATT+TGG | - | chr3_4:49033591-49033610 | Msa0504480:intron | 20.0% |
| !! | TCAAAATCTCTGTATATTAT+TGG | - | chr3_4:49033918-49033937 | Msa0504480:intron | 20.0% |
| !! | ATTAAGCAAACATAAGTTAA+AGG | + | chr3_4:49034252-49034271 | None:intergenic | 20.0% |
| !! | TAATCTGAGAAAAAAAAATG+TGG | - | chr3_4:49035295-49035314 | Msa0504480:intron | 20.0% |
| !! | ATTATTAAAAAGATCACCTT+TGG | + | chr3_4:49035505-49035524 | None:intergenic | 20.0% |
| !! | TCGAAAAAAGAAACTTTATT+TGG | + | chr3_4:49035529-49035548 | None:intergenic | 20.0% |
| !!! | GTTTCTTTTTTCGAAATATA+AGG | - | chr3_4:49035535-49035554 | Msa0504480:intron | 20.0% |
| !! | TTAAATAAATTTGTGAGTCA+GGG | + | chr3_4:49035573-49035592 | None:intergenic | 20.0% |
| !! | TTCTTCTCTAATAAAAAATG+AGG | + | chr3_4:49035709-49035728 | None:intergenic | 20.0% |
| !!! | ATACTGATTAAAGAATATAC+AGG | + | chr3_4:49035825-49035844 | None:intergenic | 20.0% |
| !!! | AACTTTTTCTCTTATAATGA+AGG | + | chr3_4:49036265-49036284 | None:intergenic | 20.0% |
| !! | GTTATCATAAAATTTGTAGA+AGG | - | chr3_4:49036291-49036310 | Msa0504480:intron | 20.0% |
| !! | TATTGTGCATGAAAAAATAA+AGG | - | chr3_4:49036444-49036463 | Msa0504480:five_prime_UTR | 20.0% |
| !! | ATTGTGCATGAAAAAATAAA+GGG | - | chr3_4:49036445-49036464 | Msa0504480:five_prime_UTR | 20.0% |
| !! | ATCCTCACAAAAAATTATTA+TGG | - | chr3_4:49036483-49036502 | Msa0504480:five_prime_UTR | 20.0% |
| !!! | TTCCATAATAATTTTTTGTG+AGG | + | chr3_4:49036488-49036507 | None:intergenic | 20.0% |
| !! | AGCTATATACTTCATAAATT+TGG | - | chr3_4:49036516-49036535 | Msa0504480:five_prime_UTR | 20.0% |
| !! | ATCTCATTGGTTGATTAATT+GGG | + | chr3_4:49032790-49032809 | None:intergenic | 25.0% |
| !! | TATCTCATTGGTTGATTAAT+TGG | + | chr3_4:49032791-49032810 | None:intergenic | 25.0% |
| !! | TTCTCTTTAGTTAGTCATTT+TGG | - | chr3_4:49033432-49033451 | Msa0504480:intron | 25.0% |
| ! | GTTAGTCAATTTGGTTAATT+TGG | - | chr3_4:49033469-49033488 | Msa0504480:intron | 25.0% |
| !! | ATTCTCTAAGAGACATTTAA+TGG | - | chr3_4:49033526-49033545 | Msa0504480:intron | 25.0% |
| ! | TGGTTAATTGAAGTGATTTA+AGG | - | chr3_4:49033611-49033630 | Msa0504480:intron | 25.0% |
| !! | GTGATATCATCTAAAATGAA+GGG | - | chr3_4:49033633-49033652 | Msa0504480:intron | 25.0% |
| ! | TAAGGAATTCGTATGAAAAT+TGG | - | chr3_4:49033686-49033705 | Msa0504480:intron | 25.0% |
| !! | AACTAGTTTAAATTCTCAGT+TGG | + | chr3_4:49033797-49033816 | None:intergenic | 25.0% |
| ! | ACTGAGAATTTAAACTAGTT+TGG | - | chr3_4:49033797-49033816 | Msa0504480:intron | 25.0% |
| !!! | ACATCATTAGCTTTATCTAA+CGG | - | chr3_4:49033951-49033970 | Msa0504480:intron | 25.0% |
| ! | TTAATTATGTGTCCATAAGT+AGG | + | chr3_4:49034194-49034213 | None:intergenic | 25.0% |
| ! | GACACATAATTAAGTTTATC+TGG | - | chr3_4:49034201-49034220 | Msa0504480:intron | 25.0% |
| ! | ACATAATTAAGTTTATCTGG+TGG | - | chr3_4:49034204-49034223 | Msa0504480:intron | 25.0% |
| ! | TAAATGTTATTAGGAAATGG+AGG | + | chr3_4:49034284-49034303 | None:intergenic | 25.0% |
| ! | TATCAAATTATTAGGGGAAA+AGG | - | chr3_4:49034402-49034421 | Msa0504480:intron | 25.0% |
| ! | ATCAAATTATTAGGGGAAAA+GGG | - | chr3_4:49034403-49034422 | Msa0504480:intron | 25.0% |
| !! | ATCAACAGGATTTTTATCAA+TGG | - | chr3_4:49034713-49034732 | Msa0504480:intron | 25.0% |
| !! | ATTTGAACATGTGTTTTCTT+TGG | + | chr3_4:49034838-49034857 | None:intergenic | 25.0% |
| !!! | GCTTTAGAAAAATGGAAAAA+AGG | + | chr3_4:49034885-49034904 | None:intergenic | 25.0% |
| !!! | CAGAATATGCTTTAGAAAAA+TGG | + | chr3_4:49034893-49034912 | None:intergenic | 25.0% |
| ! | ATATTCTGATAGATGTTGAT+AGG | - | chr3_4:49034905-49034924 | Msa0504480:CDS | 25.0% |
| ! | ATAGGAGTAGATAACTAATT+AGG | - | chr3_4:49034923-49034942 | Msa0504480:intron | 25.0% |
| ! | GAAATCATGATAGTTAACAT+TGG | + | chr3_4:49035002-49035021 | None:intergenic | 25.0% |
| ! | TACAGAAACATGTAAAATGT+TGG | + | chr3_4:49035255-49035274 | None:intergenic | 25.0% |
| ! | TGATACATATGGTTTAAAAG+AGG | + | chr3_4:49035429-49035448 | None:intergenic | 25.0% |
| ! | GTTAAATAAATTTGTGAGTC+AGG | + | chr3_4:49035574-49035593 | None:intergenic | 25.0% |
| ! | AAATTAATAGCACAAATGAC+AGG | + | chr3_4:49035911-49035930 | None:intergenic | 25.0% |
| ! | TAATGTATATATCTGTCGAT+AGG | - | chr3_4:49035950-49035969 | Msa0504480:intron | 25.0% |
| !!! | TAGCGTTACTTTTATCTCAT+TGG | + | chr3_4:49032803-49032822 | None:intergenic | 30.0% |
| ATAAAGAAAAAATGGGAACC+TGG | + | chr3_4:49033014-49033033 | None:intergenic | 30.0% | |
| TTAATTAATGCAGGCAAAGA+AGG | - | chr3_4:49033183-49033202 | Msa0504480:three_prime_UTR | 30.0% | |
| TACTTTGATGTTCAGATTGA+TGG | - | chr3_4:49033241-49033260 | Msa0504480:exon | 30.0% | |
| ! | GGTGATATCATCTAAAATGA+AGG | - | chr3_4:49033632-49033651 | Msa0504480:intron | 30.0% |
| GAGGCTAATTCTTCTAATTA+AGG | - | chr3_4:49033668-49033687 | Msa0504480:intron | 30.0% | |
| AGTTAAGTGATGTGAAATGA+GGG | - | chr3_4:49033756-49033775 | Msa0504480:intron | 30.0% | |
| ! | GTGTTGTAATAGGTCTTTTT+GGG | - | chr3_4:49033864-49033883 | Msa0504480:intron | 30.0% |
| AGTTTATCTGGTGGAATATA+TGG | - | chr3_4:49034213-49034232 | Msa0504480:intron | 30.0% | |
| TCAAATTATTAGGGGAAAAG+GGG | - | chr3_4:49034404-49034423 | Msa0504480:intron | 30.0% | |
| AAGTTCAAATGAATCTGTGA+TGG | - | chr3_4:49034647-49034666 | Msa0504480:intron | 30.0% | |
| AGTTCAAATGAATCTGTGAT+GGG | - | chr3_4:49034648-49034667 | Msa0504480:intron | 30.0% | |
| !!! | TTGTCATTTTCTGTATCAAC+AGG | - | chr3_4:49034699-49034718 | Msa0504480:intron | 30.0% |
| ! | TTTTTATCAATGGCAAATGC+TGG | - | chr3_4:49034723-49034742 | Msa0504480:intron | 30.0% |
| AATGAAAAATTGTGAGCCAT+TGG | + | chr3_4:49034757-49034776 | None:intergenic | 30.0% | |
| GAGAATAAAATAGAAGACGA+AGG | - | chr3_4:49035051-49035070 | Msa0504480:intron | 30.0% | |
| GAGAATAAAATAGAAGACGA+AGG | - | chr3_4:49035051-49035070 | Msa0504480:intron | 30.0% | |
| ! | AAGGCCTCTTTTATAATAAG+TGG | - | chr3_4:49035331-49035350 | Msa0504480:CDS | 30.0% |
| TGCACCACTTATTATAAAAG+AGG | + | chr3_4:49035338-49035357 | None:intergenic | 30.0% | |
| ATGTGATATAAGTGAGAAAG+AGG | - | chr3_4:49035403-49035422 | Msa0504480:intron | 30.0% | |
| AACCATATGTATCACGTAAT+CGG | - | chr3_4:49035435-49035454 | Msa0504480:intron | 30.0% | |
| AATTATAACACCTGTTCCAA+AGG | - | chr3_4:49035486-49035505 | Msa0504480:intron | 30.0% | |
| TTTCGAAATATAAGGTGCAT+TGG | - | chr3_4:49035543-49035562 | Msa0504480:intron | 30.0% | |
| TTGTTCAGTCTCATATTTAC+AGG | - | chr3_4:49035608-49035627 | Msa0504480:intron | 30.0% | |
| ! | TTGTTGTTGGTACTATTTGA+TGG | - | chr3_4:49035674-49035693 | Msa0504480:intron | 30.0% |
| TGTTGTTGGTACTATTTGAT+GGG | - | chr3_4:49035675-49035694 | Msa0504480:intron | 30.0% | |
| TGTATGTCATGTCATGATTA+CGG | + | chr3_4:49035788-49035807 | None:intergenic | 30.0% | |
| GTAACATCTTCAACATATTG+TGG | + | chr3_4:49036135-49036154 | None:intergenic | 30.0% | |
| AAAAAATAAGTAGTCCTGCA+GGG | + | chr3_4:49036176-49036195 | None:intergenic | 30.0% | |
| TAAAAAATAAGTAGTCCTGC+AGG | + | chr3_4:49036177-49036196 | None:intergenic | 30.0% | |
| GACTCAGTATCACTGTATTT+AGG | + | chr3_4:49032869-49032888 | None:intergenic | 35.0% | |
| TTTGAAGGAAGTGACAAACA+AGG | - | chr3_4:49033216-49033235 | Msa0504480:three_prime_UTR | 35.0% | |
| TGATGTTCAGATTGATGGAA+AGG | - | chr3_4:49033246-49033265 | Msa0504480:CDS | 35.0% | |
| GAGTTAAGTGATGTGAAATG+AGG | - | chr3_4:49033755-49033774 | Msa0504480:intron | 35.0% | |
| ! | CGTGTTGTAATAGGTCTTTT+TGG | - | chr3_4:49033863-49033882 | Msa0504480:intron | 35.0% |
| !! | GATTTTGAAAACCTTACCTG+CGG | + | chr3_4:49033906-49033925 | None:intergenic | 35.0% |
| ! | CTCGGAAGTTTTCTACAAAA+GGG | + | chr3_4:49033991-49034010 | None:intergenic | 35.0% |
| TATCACTGTCTGAACTTATG+AGG | - | chr3_4:49034313-49034332 | Msa0504480:intron | 35.0% | |
| ! | TTTTACACATGGCAATGGAA+TGG | - | chr3_4:49034510-49034529 | Msa0504480:intron | 35.0% |
| TTTACACATGGCAATGGAAT+GGG | - | chr3_4:49034511-49034530 | Msa0504480:intron | 35.0% | |
| AGACAGATAGAACATTTACC+TGG | + | chr3_4:49034598-49034617 | None:intergenic | 35.0% | |
| GTTCAAATGAATCTGTGATG+GGG | - | chr3_4:49034649-49034668 | Msa0504480:intron | 35.0% | |
| TCTACACAGTATACTCATGT+TGG | + | chr3_4:49035033-49035052 | None:intergenic | 35.0% | |
| CTTATATCACATGTTGTCGT+AGG | + | chr3_4:49035395-49035414 | None:intergenic | 35.0% | |
| ACCATATGTATCACGTAATC+GGG | - | chr3_4:49035436-49035455 | Msa0504480:intron | 35.0% | |
| ATCGGGAACAAAATGGAAAA+AGG | - | chr3_4:49035453-49035472 | Msa0504480:CDS | 35.0% | |
| !! | AAAAAGATCACCTTTGGAAC+AGG | + | chr3_4:49035499-49035518 | None:intergenic | 35.0% |
| CAGTCTCATATTTACAGGAA+AGG | - | chr3_4:49035613-49035632 | Msa0504480:intron | 35.0% | |
| !! | ATCCACGATCATTTTGTTGT+TGG | - | chr3_4:49035661-49035680 | Msa0504480:intron | 35.0% |
| TACCAACAACAAAATGATCG+TGG | + | chr3_4:49035666-49035685 | None:intergenic | 35.0% | |
| TCATGATTACGGAAGAATTG+AGG | + | chr3_4:49035777-49035796 | None:intergenic | 35.0% | |
| GTATATATCTGTCGATAGGT+TGG | - | chr3_4:49035954-49035973 | Msa0504480:intron | 35.0% | |
| !!! | AAGGCATGTTGTTTTTGGAA+AGG | - | chr3_4:49035981-49036000 | Msa0504480:intron | 35.0% |
| !!! | TGTTTTTGGAAAGGTGCTTT+CGG | - | chr3_4:49035990-49036009 | Msa0504480:intron | 35.0% |
| GTTTACAAGATTGAAGCTGA+AGG | - | chr3_4:49036024-49036043 | Msa0504480:intron | 35.0% | |
| TATTGTGGTTGAGATATGAG+AGG | + | chr3_4:49036120-49036139 | None:intergenic | 35.0% | |
| AAAAATAAGTAGTCCTGCAG+GGG | + | chr3_4:49036175-49036194 | None:intergenic | 35.0% | |
| !! | TTGCATCTTTGCTGTGTTTT+TGG | - | chr3_4:49036417-49036436 | Msa0504480:five_prime_UTR | 35.0% |
| !! | TGCATCTTTGCTGTGTTTTT+GGG | - | chr3_4:49036418-49036437 | Msa0504480:five_prime_UTR | 35.0% |
| ! | TTTGCGTGGTTTGGACTAAT+GGG | + | chr3_4:49032838-49032857 | None:intergenic | 40.0% |
| CTATGATCGATCTCAGTGTT+CGG | + | chr3_4:49032905-49032924 | None:intergenic | 40.0% | |
| AGCAAAGCAAAACAAACCGA+TGG | - | chr3_4:49032930-49032949 | Msa0504480:three_prime_UTR | 40.0% | |
| ! | CTCTTTTCACTGTTCCTCTT+CGG | - | chr3_4:49032973-49032992 | Msa0504480:three_prime_UTR | 40.0% |
| TTGTGACTCGTTTACTTTCC+AGG | - | chr3_4:49033839-49033858 | Msa0504480:intron | 40.0% | |
| TTTCCAGGTCGTGTTGTAAT+AGG | - | chr3_4:49033854-49033873 | Msa0504480:intron | 40.0% | |
| ! | AAAACCTTACCTGCGGTTTT+TGG | + | chr3_4:49033899-49033918 | None:intergenic | 40.0% |
| ! | GCTCGGAAGTTTTCTACAAA+AGG | + | chr3_4:49033992-49034011 | None:intergenic | 40.0% |
| AAGAACCGATGACTATCAGT+TGG | - | chr3_4:49034152-49034171 | Msa0504480:intron | 40.0% | |
| ACAAGCCAACTGATAGTCAT+CGG | + | chr3_4:49034160-49034179 | None:intergenic | 40.0% | |
| !! | ACTATCAGTTGGCTTGTAAC+TGG | - | chr3_4:49034163-49034182 | Msa0504480:intron | 40.0% |
| TAACTGGATAGGCCTACTTA+TGG | - | chr3_4:49034179-49034198 | Msa0504480:intron | 40.0% | |
| GGAAAGCCTCTTCATTACAA+AGG | - | chr3_4:49034439-49034458 | Msa0504480:intron | 40.0% | |
| GAGCTACCTTTGTAATGAAG+AGG | + | chr3_4:49034448-49034467 | None:intergenic | 40.0% | |
| ACAAAGGTAGCTCATTCCAT+AGG | - | chr3_4:49034455-49034474 | Msa0504480:intron | 40.0% | |
| TAAAGCTAGGGATGATCCTA+TGG | + | chr3_4:49034474-49034493 | None:intergenic | 40.0% | |
| !! | ATCCCTAGCTTTATGATCCA+AGG | - | chr3_4:49034481-49034500 | Msa0504480:intron | 40.0% |
| CTCCTTGGATCATAAAGCTA+GGG | + | chr3_4:49034486-49034505 | None:intergenic | 40.0% | |
| CATGTGTAAAATCACCTCCT+TGG | + | chr3_4:49034501-49034520 | None:intergenic | 40.0% | |
| ! | CAAGGAGGTGATTTTACACA+TGG | - | chr3_4:49034499-49034518 | Msa0504480:intron | 40.0% |
| ! | GGTGATTTTACACATGGCAA+TGG | - | chr3_4:49034505-49034524 | Msa0504480:intron | 40.0% |
| ATGGGCGGAGAATCAATTTA+CGG | - | chr3_4:49034529-49034548 | Msa0504480:intron | 40.0% | |
| AACTTCAAGCTAAAGCACAC+TGG | - | chr3_4:49034571-49034590 | Msa0504480:CDS | 40.0% | |
| AATTGTGAGCCATTGGTATC+AGG | + | chr3_4:49034750-49034769 | None:intergenic | 40.0% | |
| TTACAACTGTGACAACTAGC+TGG | - | chr3_4:49034775-49034794 | Msa0504480:CDS | 40.0% | |
| ATGTGGCGTAAGTGAGAAAA+AGG | - | chr3_4:49035312-49035331 | Msa0504480:intron | 40.0% | |
| TCCCGATTACGTGATACATA+TGG | + | chr3_4:49035440-49035459 | None:intergenic | 40.0% | |
| TCACGTAATCGGGAACAAAA+TGG | - | chr3_4:49035446-49035465 | Msa0504480:CDS | 40.0% | |
| ! | ATATCTGTCGATAGGTTGGA+CGG | - | chr3_4:49035958-49035977 | Msa0504480:intron | 40.0% |
| !!! | GTTTTTGGAAAGGTGCTTTC+GGG | - | chr3_4:49035991-49036010 | Msa0504480:intron | 40.0% |
| GAAGCTGAAGGAAATCAAAG+TGG | - | chr3_4:49036036-49036055 | Msa0504480:intron | 40.0% | |
| AAGGTTGTGATTGCTGATAG+TGG | - | chr3_4:49036072-49036091 | Msa0504480:intron | 40.0% | |
| ATGAGAGGATGCACTTATAG+AGG | + | chr3_4:49036105-49036124 | None:intergenic | 40.0% | |
| GAAGGAAATCCAAGTGAACA+TGG | - | chr3_4:49036309-49036328 | Msa0504480:intron | 40.0% | |
| !! | GCATCTTTGCTGTGTTTTTG+GGG | - | chr3_4:49036419-49036438 | Msa0504480:five_prime_UTR | 40.0% |
| TCCAAGAGGGTTTACGAACA+AGG | - | chr3_4:49032764-49032783 | Msa0504480:three_prime_UTR | 45.0% | |
| ! | GTTTGCGTGGTTTGGACTAA+TGG | + | chr3_4:49032839-49032858 | None:intergenic | 45.0% |
| TTTAGGAGCTTCTGTTTGCG+TGG | + | chr3_4:49032852-49032871 | None:intergenic | 45.0% | |
| !!! | AACGACGTCGTTTTTGCCAT+CGG | + | chr3_4:49032949-49032968 | None:intergenic | 45.0% |
| TAAGAGATAGGGTTCCGAAG+AGG | + | chr3_4:49032990-49033009 | None:intergenic | 45.0% | |
| GGGAACCTGGATAAGAGATA+GGG | + | chr3_4:49033001-49033020 | None:intergenic | 45.0% | |
| TGGGAACCTGGATAAGAGAT+AGG | + | chr3_4:49033002-49033021 | None:intergenic | 45.0% | |
| GAAGGCGAAAGAGGATTTGA+AGG | - | chr3_4:49033201-49033220 | Msa0504480:three_prime_UTR | 45.0% | |
| CAGATTGATGGAAAGGATGC+AGG | - | chr3_4:49033253-49033272 | Msa0504480:CDS | 45.0% | |
| GTCTCTGAATGTGTCAGACA+CGG | - | chr3_4:49033362-49033381 | Msa0504480:intron | 45.0% | |
| AGACCTATTACAACACGACC+TGG | + | chr3_4:49033860-49033879 | None:intergenic | 45.0% | |
| AAGACAGTTCCAAAAACCGC+AGG | - | chr3_4:49033887-49033906 | Msa0504480:intron | 45.0% | |
| AGTTCCAAAAACCGCAGGTA+AGG | - | chr3_4:49033892-49033911 | Msa0504480:intron | 45.0% | |
| !! | CAGTTGGCTTGTAACTGGAT+AGG | - | chr3_4:49034168-49034187 | Msa0504480:intron | 45.0% |
| TTATTAGGGGAAAAGGGGAC+TGG | - | chr3_4:49034409-49034428 | Msa0504480:intron | 45.0% | |
| ! | GAAAAGGGGACTGGTAAATC+TGG | - | chr3_4:49034418-49034437 | Msa0504480:intron | 45.0% |
| CCTCCTTGGATCATAAAGCT+AGG | + | chr3_4:49034487-49034506 | None:intergenic | 45.0% | |
| !! | CCTAGCTTTATGATCCAAGG+AGG | - | chr3_4:49034484-49034503 | Msa0504480:intron | 45.0% |
| AATGCTGGTCCTGATACCAA+TGG | - | chr3_4:49034738-49034757 | Msa0504480:intron | 45.0% | |
| !!! | GACGGAAGGCATGTTGTTTT+TGG | - | chr3_4:49035976-49035995 | Msa0504480:intron | 45.0% |
| GCAATCACAACCTTGCTCTT+GGG | + | chr3_4:49036066-49036085 | None:intergenic | 45.0% | |
| AGCAATCACAACCTTGCTCT+TGG | + | chr3_4:49036067-49036086 | None:intergenic | 45.0% | |
| ACTCAACTGCCATGTTCACT+TGG | + | chr3_4:49036321-49036340 | None:intergenic | 45.0% | |
| !!! | TTTTTTATAAATATACATAA+TGG | + | chr3_4:49035095-49035114 | None:intergenic | 5.0% |
| ! | GCCTTGTTCGTAAACCCTCT+TGG | + | chr3_4:49032768-49032787 | None:intergenic | 50.0% |
| GAGCTTCTGTTTGCGTGGTT+TGG | + | chr3_4:49032847-49032866 | None:intergenic | 50.0% | |
| CGGAACCCTATCTCTTATCC+AGG | - | chr3_4:49032993-49033012 | Msa0504480:three_prime_UTR | 50.0% | |
| ! | TGAAGGGTGTGCGTGTATAG+AGG | - | chr3_4:49033649-49033668 | Msa0504480:intron | 50.0% |
| AACTTCCGAGCTCTTTGCAC+AGG | - | chr3_4:49034001-49034020 | Msa0504480:intron | 50.0% | |
| ACACATGGCAATGGAATGGG+CGG | - | chr3_4:49034514-49034533 | Msa0504480:intron | 50.0% | |
| AAGCTAAAGCACACTGGTCC+AGG | - | chr3_4:49034577-49034596 | Msa0504480:CDS | 50.0% | |
| TGCGTCAAAACTGCATGCAG+CGG | + | chr3_4:49034959-49034978 | None:intergenic | 50.0% | |
| !! | TGGAAAGGTGCTTTCGGGAA+TGG | - | chr3_4:49035996-49036015 | Msa0504480:intron | 50.0% |
| AAGTGGAACTCCCAAGAGCA+AGG | - | chr3_4:49036053-49036072 | Msa0504480:intron | 50.0% | |
| TTCATTTCCATTGCCCCTGC+AGG | - | chr3_4:49036159-49036178 | Msa0504480:intron | 50.0% | |
| GCAGGCAAAGAAGGCGAAAG+AGG | - | chr3_4:49033192-49033211 | Msa0504480:three_prime_UTR | 55.0% | |
| GCTCACCTGTGCAAAGAGCT+CGG | + | chr3_4:49034009-49034028 | None:intergenic | 55.0% | |
| ! | CTGTCGATAGGTTGGACGGA+AGG | - | chr3_4:49035962-49035981 | Msa0504480:intron | 55.0% |
| AAGTAGTCCTGCAGGGGCAA+TGG | + | chr3_4:49036169-49036188 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 49032758 | 49036594 | 49032758 | ID=Msa0504480;Name=Msa0504480 |
| chr3_4 | mRNA | 49032758 | 49036594 | 49032758 | ID=Msa0504480-mRNA-1;Parent=Msa0504480;Name=Msa0504480-mRNA-1;_AED=0.05;_eAED=0.05;_QI=191|1|1|1|0.85|0.75|8|458|204 |
| chr3_4 | exon | 49032758 | 49032859 | 49032758 | ID=Msa0504480-mRNA-1:exon:10569;Parent=Msa0504480-mRNA-1 |
| chr3_4 | exon | 49032886 | 49033380 | 49032886 | ID=Msa0504480-mRNA-1:exon:10568;Parent=Msa0504480-mRNA-1 |
| chr3_4 | exon | 49034556 | 49034631 | 49034556 | ID=Msa0504480-mRNA-1:exon:10567;Parent=Msa0504480-mRNA-1 |
| chr3_4 | exon | 49034754 | 49034936 | 49034754 | ID=Msa0504480-mRNA-1:exon:10566;Parent=Msa0504480-mRNA-1 |
| chr3_4 | exon | 49035330 | 49035353 | 49035330 | ID=Msa0504480-mRNA-1:exon:10565;Parent=Msa0504480-mRNA-1 |
| chr3_4 | exon | 49035444 | 49035491 | 49035444 | ID=Msa0504480-mRNA-1:exon:10564;Parent=Msa0504480-mRNA-1 |
| chr3_4 | exon | 49036078 | 49036156 | 49036078 | ID=Msa0504480-mRNA-1:exon:10563;Parent=Msa0504480-mRNA-1 |
| chr3_4 | exon | 49036338 | 49036594 | 49036338 | ID=Msa0504480-mRNA-1:exon:10562;Parent=Msa0504480-mRNA-1 |
| chr3_4 | five_prime_UTR | 49036404 | 49036594 | 49036404 | ID=Msa0504480-mRNA-1:five_prime_utr;Parent=Msa0504480-mRNA-1 |
| chr3_4 | CDS | 49036338 | 49036403 | 49036338 | ID=Msa0504480-mRNA-1:cds;Parent=Msa0504480-mRNA-1 |
| chr3_4 | CDS | 49036078 | 49036156 | 49036078 | ID=Msa0504480-mRNA-1:cds;Parent=Msa0504480-mRNA-1 |
| chr3_4 | CDS | 49035444 | 49035491 | 49035444 | ID=Msa0504480-mRNA-1:cds;Parent=Msa0504480-mRNA-1 |
| chr3_4 | CDS | 49035330 | 49035353 | 49035330 | ID=Msa0504480-mRNA-1:cds;Parent=Msa0504480-mRNA-1 |
| chr3_4 | CDS | 49034754 | 49034936 | 49034754 | ID=Msa0504480-mRNA-1:cds;Parent=Msa0504480-mRNA-1 |
| chr3_4 | CDS | 49034556 | 49034631 | 49034556 | ID=Msa0504480-mRNA-1:cds;Parent=Msa0504480-mRNA-1 |
| chr3_4 | CDS | 49033242 | 49033380 | 49033242 | ID=Msa0504480-mRNA-1:cds;Parent=Msa0504480-mRNA-1 |
| chr3_4 | three_prime_UTR | 49032886 | 49033241 | 49032886 | ID=Msa0504480-mRNA-1:three_prime_utr;Parent=Msa0504480-mRNA-1 |
| chr3_4 | three_prime_UTR | 49032758 | 49032859 | 49032758 | ID=Msa0504480-mRNA-1:three_prime_utr;Parent=Msa0504480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
