AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0304510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0304510 MtrunA17_Chr2g0332921 100.000 180 0 0 1 180 1 180 4.04e-130 362
Msa0304510 MtrunA17_Chr2g0307071 77.778 180 40 0 1 180 1 180 7.63e-94 270
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0304510 AT1G52600.1 91.667 180 15 0 1 180 1 180 4.70e-121 339
Msa0304510 AT3G15710.1 85.556 180 26 0 1 180 1 180 2.16e-110 312

Find 59 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGTTGTCGTTGTTCTTTC+TGG -0.006320 2_3:-61849322 Msa0304510:CDS
TCTTAATATTATGCTGTTAA+TGG 0.152002 2_3:+61847179 None:intergenic
TATATTCTCATTGGTGCTTT+GGG 0.216256 2_3:-61847322 Msa0304510:CDS
GCTGCAAAGGCACCACATTA+TGG 0.262708 2_3:-61847966 Msa0304510:CDS
CGTTGTTCTTTCTGGAAGTA+TGG 0.268459 2_3:-61849314 Msa0304510:CDS
TTACGTCTGCACTGATAATA+TGG 0.295460 2_3:-61849378 Msa0304510:CDS
GTATATTCTCATTGGTGCTT+TGG 0.303583 2_3:-61847323 Msa0304510:CDS
CACTCACTCACTCAAGAAAT+TGG 0.305413 2_3:-61850298 Msa0304510:five_prime_UTR
GATCGTGCATCGTGTAATTA+AGG 0.306443 2_3:-61848884 Msa0304510:intron
GGTTCCTACCTTATGTTGGC+TGG 0.311493 2_3:-61847631 Msa0304510:CDS
GTTTCTCTATTTGTATTTGT+TGG 0.349188 2_3:-61850342 Msa0304510:five_prime_UTR
TTGGCAGGAGATAACAACTA+TGG 0.367451 2_3:-61848025 Msa0304510:intron
ACAATCTCTCCTGCGCGAAT+TGG 0.370765 2_3:+61849090 None:intergenic
CTGCAAAGGCACCACATTAT+GGG 0.401647 2_3:-61847965 Msa0304510:CDS
ACGGATCTGAAGAGATTTGA+TGG 0.414274 2_3:+61850202 None:intergenic
ATGGCCAGCTTTGGCTGCAA+AGG 0.415700 2_3:-61847979 Msa0304510:CDS
TCTTTCTGGAAGTATGGAAC+CGG 0.425999 2_3:-61849308 Msa0304510:CDS
TGTATGCTCATGGCCAGCTT+TGG 0.429153 2_3:-61847988 Msa0304510:CDS
GAAGAATCTCAATCAAATTA+CGG 0.442574 2_3:-61847269 Msa0304510:three_prime_UTR
CCAGAAAGAACAACGACAAC+AGG 0.443989 2_3:+61849322 None:intergenic
CTTGTTCTTACACATGAGTA+AGG 0.448520 2_3:-61849115 Msa0304510:CDS
CTCACTCAGGCTGTTAGCCT+TGG 0.449557 2_3:-61850173 Msa0304510:intron
TATGCTGTTAATGGTACAAA+AGG 0.452611 2_3:+61847188 None:intergenic
AGCAAACAAACCTTGATGAT+AGG 0.465854 2_3:+61847584 None:intergenic
GGTGCCTTTGCAGCCAAAGC+TGG 0.467005 2_3:+61847975 None:intergenic
CACATTATGGGTAGAGCTGT+TGG 0.467483 2_3:-61847953 Msa0304510:CDS
GTTCCTACCTTATGTTGGCT+GGG 0.472418 2_3:-61847630 Msa0304510:CDS
TTGCTTACACGTTTGAAGCC+CGG 0.485448 2_3:+61849289 None:intergenic
GGCAGGTTCCTACCTTATGT+TGG 0.490903 2_3:-61847635 Msa0304510:intron
GTACATGAAAGAGGAGATAC+CGG 0.495722 2_3:-61848241 Msa0304510:CDS
ATTGTCACCCAGCCAACATA+AGG 0.495952 2_3:+61847623 None:intergenic
TGGCAGGAGATAACAACTAT+GGG 0.501904 2_3:-61848024 Msa0304510:intron
AGAAACGCAATGGGTTTCGT+TGG 0.517115 2_3:-61850239 Msa0304510:exon
TTTGCTCATAGTACTATTCG+AGG 0.518018 2_3:+61847241 None:intergenic
ATTCAAGAAAGAAACGCAAT+GGG 0.520667 2_3:-61850248 Msa0304510:exon
ACATTATGGGTAGAGCTGTT+GGG 0.526062 2_3:-61847952 Msa0304510:intron
ATATTCTCATTGGTGCTTTG+GGG 0.529101 2_3:-61847321 Msa0304510:CDS
TTAATTACACGATGCACGAT+CGG 0.532530 2_3:+61848886 None:intergenic
CTTTCTGGAAGTATGGAACC+GGG 0.532635 2_3:-61849307 Msa0304510:CDS
AAGGCATTGATGTGCATCAC+TGG 0.537420 2_3:-61849355 Msa0304510:CDS
CATTCAAGAAAGAAACGCAA+TGG 0.543308 2_3:-61850249 Msa0304510:exon
GAGGTTGATGTTCTCACAAA+AGG 0.544332 2_3:-61848217 Msa0304510:intron
TGATAACTTCAAAAGAGTAA+AGG 0.546067 2_3:-61847291 Msa0304510:exon
CAAATCTCTTCAGATCCGTC+AGG 0.547809 2_3:-61850198 Msa0304510:CDS
ATAACAACTATGGGGATGAC+AGG 0.548283 2_3:-61848015 Msa0304510:CDS
GATCCGTCAGGTCCTCACTC+AGG 0.557343 2_3:-61850186 Msa0304510:CDS
CCAAACAAAACAAGAGAAAG+CGG 0.561025 2_3:+61850372 None:intergenic
TGTGAGAACATCAACCTCCC+CGG 0.595167 2_3:+61848222 None:intergenic
TACATGAAAGAGGAGATACC+GGG 0.600542 2_3:-61848240 Msa0304510:CDS
GACAGGCTACTGTATGCTCA+TGG 0.602506 2_3:-61847998 Msa0304510:CDS
GTCTGCACTGATAATATGGA+AGG 0.605731 2_3:-61849374 Msa0304510:CDS
CAGCCTGAGTGAGGACCTGA+CGG 0.616226 2_3:+61850183 None:intergenic
AGTAAGGATCCAATTCGCGC+AGG 0.635833 2_3:-61849099 Msa0304510:CDS
TCACCCAGCCAACATAAGGT+AGG 0.651154 2_3:+61847627 None:intergenic
CAACAGCTCTACCCATAATG+TGG 0.657840 2_3:+61847954 None:intergenic
CAAGGCTAACAGCCTGAGTG+AGG 0.659133 2_3:+61850174 None:intergenic
GGCAGGAGATAACAACTATG+GGG 0.694070 2_3:-61848023 Msa0304510:intron
ACATGAAAGAGGAGATACCG+GGG 0.758036 2_3:-61848239 Msa0304510:CDS
TGAAAGAGGAGATACCGGGG+AGG 0.784707 2_3:-61848236 Msa0304510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAAATAAATATATA+AGG - chr2_3:61849030-61849049 Msa0304510:intron 0.0%
!! TCAAAAAATGAATTATTATA+TGG - chr2_3:61847598-61847617 Msa0304510:CDS 10.0%
!! CAAAAAATGAATTATTATAT+GGG - chr2_3:61847599-61847618 Msa0304510:CDS 10.0%
!! AAAAAATGAATTATTATATG+GGG - chr2_3:61847600-61847619 Msa0304510:CDS 10.0%
!!! TTAACTTTATTTTATCTTTT+TGG - chr2_3:61847959-61847978 Msa0304510:CDS 10.0%
!!! TTTTTTTGTTGAATTGAATT+GGG + chr2_3:61847407-61847426 None:intergenic 15.0%
!!! TTTTTTTTGTTGAATTGAAT+TGG + chr2_3:61847408-61847427 None:intergenic 15.0%
!! TACATTATAGAATTTCTATT+TGG - chr2_3:61847437-61847456 Msa0304510:intron 15.0%
!!! GTATCATTTTTTTCAATTTT+TGG - chr2_3:61847622-61847641 Msa0304510:CDS 15.0%
!! TAAAGGAAAAAAAAAAACAA+GGG + chr2_3:61848620-61848639 None:intergenic 15.0%
!!! TTGTTTTTTTTTTTCCTTTA+GGG - chr2_3:61848620-61848639 Msa0304510:intron 15.0%
!! AGAAAAAGGAAATATAATAT+TGG + chr2_3:61849426-61849445 None:intergenic 15.0%
!! TTTACATTTATGTATGTTTA+TGG - chr2_3:61850019-61850038 Msa0304510:intron 15.0%
!!! TTTTTTGTTGAATTGAATTG+GGG + chr2_3:61847406-61847425 None:intergenic 20.0%
!! TTGATTAAAATTGGAATTCT+TGG + chr2_3:61847560-61847579 None:intergenic 20.0%
!!! TTTTTTTCAATTTTTGGATG+TGG - chr2_3:61847628-61847647 Msa0304510:CDS 20.0%
!!! TTTTTTCAATTTTTGGATGT+GGG - chr2_3:61847629-61847648 Msa0304510:CDS 20.0%
!!! TCAATTTAGGTTATAATTCA+AGG - chr2_3:61847659-61847678 Msa0304510:intron 20.0%
!! TTTATGGGTTTATTGATAAA+TGG - chr2_3:61847697-61847716 Msa0304510:intron 20.0%
!! TAAATGGTTGTTTATCTTTA+AGG - chr2_3:61847713-61847732 Msa0304510:intron 20.0%
!! TATTAGATACAGAATTACTA+AGG + chr2_3:61848292-61848311 None:intergenic 20.0%
!! CTAAAGGAAAAAAAAAAACA+AGG + chr2_3:61848621-61848640 None:intergenic 20.0%
!!! CTTGTTTTTTTTTTTCCTTT+AGG - chr2_3:61848619-61848638 Msa0304510:intron 20.0%
!! TTAGTTGTCAATTTATATAG+TGG - chr2_3:61849449-61849468 Msa0304510:intron 20.0%
!!! TATCATGATTTTTAACCAAT+GGG - chr2_3:61850078-61850097 Msa0304510:intron 20.0%
!!! ATGCTTTTTTTTTAACTTGA+AGG - chr2_3:61850325-61850344 Msa0304510:five_prime_UTR 20.0%
!! TCTTAATATTATGCTGTTAA+TGG + chr2_3:61850363-61850382 None:intergenic 20.0%
! GTTTCTCTATTTGTATTTGT+TGG - chr2_3:61847197-61847216 Msa0304510:three_prime_UTR 25.0%
!!! TTTTTCAATTTTTGGATGTG+GGG - chr2_3:61847630-61847649 Msa0304510:CDS 25.0%
!!! TATCTTTAAGGATTTTGATG+AGG - chr2_3:61847725-61847744 Msa0304510:intron 25.0%
!!! ATCTTTAAGGATTTTGATGA+GGG - chr2_3:61847726-61847745 Msa0304510:intron 25.0%
! CTATGAATAAAACAATGATC+TGG + chr2_3:61848104-61848123 None:intergenic 25.0%
! TTTCTGTTGCTAATGAATAT+TGG - chr2_3:61848384-61848403 Msa0304510:intron 25.0%
!!! TAATGAATATTGGTTTTTGC+AGG - chr2_3:61848394-61848413 Msa0304510:intron 25.0%
!!! AATGAATATTGGTTTTTGCA+GGG - chr2_3:61848395-61848414 Msa0304510:intron 25.0%
! TTGAAGTAAGTAAAACATAC+AGG + chr2_3:61848516-61848535 None:intergenic 25.0%
! TCAAGTAGAATACAAAGAAT+CGG + chr2_3:61848563-61848582 None:intergenic 25.0%
! TATTAGGAAAAAGTTGTTCA+CGG - chr2_3:61848826-61848845 Msa0304510:intron 25.0%
! ATTTCATTTCTTGAATGTGT+AGG - chr2_3:61848867-61848886 Msa0304510:intron 25.0%
! TTTCATTTCTTGAATGTGTA+GGG - chr2_3:61848868-61848887 Msa0304510:intron 25.0%
! TATGTAGTTACAGTTTGAAT+AGG + chr2_3:61848897-61848916 None:intergenic 25.0%
! GATAAATAAGAACTAAAAGC+AGG + chr2_3:61849003-61849022 None:intergenic 25.0%
! ATCACTAATCTGAGAAATAA+TGG - chr2_3:61849183-61849202 Msa0304510:intron 25.0%
!! TAAATGCTTGATCATTTTGT+AGG - chr2_3:61849276-61849295 Msa0304510:intron 25.0%
!! TGATATTAAGGTATTATGCA+TGG - chr2_3:61849703-61849722 Msa0304510:intron 25.0%
! TAAATGATAACACAATAGGT+TGG + chr2_3:61849984-61850003 None:intergenic 25.0%
!! CATTGGTTAAAAATCATGAT+AGG + chr2_3:61850079-61850098 None:intergenic 25.0%
!! CTATCATGATTTTTAACCAA+TGG - chr2_3:61850077-61850096 Msa0304510:intron 25.0%
! CTTGTTGCAATTCAAATTAT+AGG + chr2_3:61850160-61850179 None:intergenic 25.0%
! TGATAACTTCAAAAGAGTAA+AGG - chr2_3:61850248-61850267 Msa0304510:exon 25.0%
! GAAGAATCTCAATCAAATTA+CGG - chr2_3:61850270-61850289 Msa0304510:five_prime_UTR 25.0%
!!! TCTTGTTTTGTTTGGTCTTT+GGG - chr2_3:61847175-61847194 Msa0304510:three_prime_UTR 30.0%
ATTCAAGAAAGAAACGCAAT+GGG - chr2_3:61847291-61847310 Msa0304510:exon 30.0%
! TTTTTCGTGTTGTGGTTTAT+GGG - chr2_3:61847682-61847701 Msa0304510:intron 30.0%
!! TCTTTAAGGATTTTGATGAG+GGG - chr2_3:61847727-61847746 Msa0304510:intron 30.0%
TGTGAGGAATTCTAATGTTA+AGG - chr2_3:61847755-61847774 Msa0304510:intron 30.0%
GTGAGGAATTCTAATGTTAA+GGG - chr2_3:61847756-61847775 Msa0304510:intron 30.0%
AACAAACTGTTAATCCAAAC+AGG - chr2_3:61848042-61848061 Msa0304510:intron 30.0%
ACAAACTGTTAATCCAAACA+GGG - chr2_3:61848043-61848062 Msa0304510:intron 30.0%
GGTGTTCATATAATCTACAT+AGG + chr2_3:61848069-61848088 None:intergenic 30.0%
!!! ATGAATATTGGTTTTTGCAG+GGG - chr2_3:61848396-61848415 Msa0304510:intron 30.0%
! TTAAGGTAAGCTCAGTATTT+TGG - chr2_3:61848672-61848691 Msa0304510:intron 30.0%
TGGATAAGATTGATATTACC+TGG - chr2_3:61849203-61849222 Msa0304510:intron 30.0%
! ATTTTGTAGGTACATGAAAG+AGG - chr2_3:61849289-61849308 Msa0304510:intron 30.0%
TCAAATTCACTACTGAGATT+GGG + chr2_3:61849402-61849421 None:intergenic 30.0%
ATCAAATTCACTACTGAGAT+TGG + chr2_3:61849403-61849422 None:intergenic 30.0%
TTGACAACTAAACGAGAAAA+AGG + chr2_3:61849440-61849459 None:intergenic 30.0%
AAACAGCAAAATACAAGAGA+CGG + chr2_3:61849494-61849513 None:intergenic 30.0%
!!! CTCTTGTATTTTGCTGTTTT+TGG - chr2_3:61849495-61849514 Msa0304510:intron 30.0%
GAATGAGATCTGTGATATTA+AGG - chr2_3:61849691-61849710 Msa0304510:intron 30.0%
GATAAATTAGGATAAACCCT+TGG + chr2_3:61849788-61849807 None:intergenic 30.0%
GAATTAGGGTAGGATAAATT+AGG + chr2_3:61849800-61849819 None:intergenic 30.0%
AATGCAAACTGTAGGAATTA+GGG + chr2_3:61849814-61849833 None:intergenic 30.0%
! CAAAACATGCTTTGTTCTAT+AGG + chr2_3:61849837-61849856 None:intergenic 30.0%
ACATTGCTTGTATTTGTCAA+TGG - chr2_3:61849883-61849902 Msa0304510:intron 30.0%
CAGCTAAATGATAACACAAT+AGG + chr2_3:61849988-61850007 None:intergenic 30.0%
TGTTATCATTTAGCTGAAGT+TGG - chr2_3:61849992-61850011 Msa0304510:intron 30.0%
! GTTTTGCAGTATATTCTCAT+TGG - chr2_3:61850208-61850227 Msa0304510:CDS 30.0%
! TATATTCTCATTGGTGCTTT+GGG - chr2_3:61850217-61850236 Msa0304510:CDS 30.0%
TATGCTGTTAATGGTACAAA+AGG + chr2_3:61850354-61850373 None:intergenic 30.0%
CCAAACAAAACAAGAGAAAG+CGG + chr2_3:61847170-61847189 None:intergenic 35.0%
!!! CTCTTGTTTTGTTTGGTCTT+TGG - chr2_3:61847174-61847193 Msa0304510:three_prime_UTR 35.0%
CATTCAAGAAAGAAACGCAA+TGG - chr2_3:61847290-61847309 Msa0304510:exon 35.0%
ATTTGGTACCTACATTGATC+TGG - chr2_3:61847454-61847473 Msa0304510:intron 35.0%
TTTGGTACCTACATTGATCT+GGG - chr2_3:61847455-61847474 Msa0304510:intron 35.0%
TGTGGGGTTATCATCAATTT+AGG - chr2_3:61847646-61847665 Msa0304510:intron 35.0%
! ATTCAAGGTTTTTCGTGTTG+TGG - chr2_3:61847674-61847693 Msa0304510:intron 35.0%
! GTTTTTCGTGTTGTGGTTTA+TGG - chr2_3:61847681-61847700 Msa0304510:intron 35.0%
!! CTTTAAGGATTTTGATGAGG+GGG - chr2_3:61847728-61847747 Msa0304510:intron 35.0%
! TCTAATGTTAAGGGCATGTT+TGG - chr2_3:61847765-61847784 Msa0304510:intron 35.0%
GTCTCACAGACTTATATGAT+TGG + chr2_3:61847811-61847830 None:intergenic 35.0%
TATAAGTCTGTGAGACTGTT+TGG - chr2_3:61847815-61847834 Msa0304510:intron 35.0%
ATGATCTGGAAGCAATTCTA+TGG + chr2_3:61848090-61848109 None:intergenic 35.0%
! TTACGTCTGCACTGATAATA+TGG - chr2_3:61848161-61848180 Msa0304510:intron 35.0%
!!! TGAATATTGGTTTTTGCAGG+GGG - chr2_3:61848397-61848416 Msa0304510:intron 35.0%
CTTGTTCTTACACATGAGTA+AGG - chr2_3:61848424-61848443 Msa0304510:intron 35.0%
ATACAGGATATACAACAGAG+AGG + chr2_3:61848500-61848519 None:intergenic 35.0%
TCCTTACTGACAAAATCTGT+TGG - chr2_3:61848588-61848607 Msa0304510:intron 35.0%
! ACCAACAGATTTTGTCAGTA+AGG + chr2_3:61848592-61848611 None:intergenic 35.0%
TTAATTACACGATGCACGAT+CGG + chr2_3:61848656-61848675 None:intergenic 35.0%
ATCCACACATAATTGTCTTC+TGG - chr2_3:61848797-61848816 Msa0304510:intron 35.0%
ATAGGACCCAGATACAAAAA+TGG + chr2_3:61848966-61848985 None:intergenic 35.0%
AAAAGTGAAGGAACATCCAA+TGG + chr2_3:61849078-61849097 None:intergenic 35.0%
! AAGCATTTAGAGTCTCAAAC+AGG + chr2_3:61849265-61849284 None:intergenic 35.0%
AACAGCAAAATACAAGAGAC+GGG + chr2_3:61849493-61849512 None:intergenic 35.0%
!!! TGTATTTTGCTGTTTTTGGC+AGG - chr2_3:61849499-61849518 Msa0304510:intron 35.0%
TCTCATAGACTCGTAACATA+AGG - chr2_3:61849623-61849642 Msa0304510:intron 35.0%
GACTCGTAACATAAGGATTA+AGG - chr2_3:61849630-61849649 Msa0304510:intron 35.0%
GTGTTAGATATTCCACAAGT+AGG + chr2_3:61849745-61849764 None:intergenic 35.0%
TTGAACCTTTGAACATACCA+AGG - chr2_3:61849768-61849787 Msa0304510:intron 35.0%
TGAACCTTTGAACATACCAA+GGG - chr2_3:61849769-61849788 Msa0304510:intron 35.0%
TAAACCCTTGGTATGTTCAA+AGG + chr2_3:61849776-61849795 None:intergenic 35.0%
GAATGCAAACTGTAGGAATT+AGG + chr2_3:61849815-61849834 None:intergenic 35.0%
TCTATAGGAATGCAAACTGT+AGG + chr2_3:61849822-61849841 None:intergenic 35.0%
GACTGAAAAACCTATCATCA+AGG - chr2_3:61849945-61849964 Msa0304510:intron 35.0%
! AGCAAACAAACCTTGATGAT+AGG + chr2_3:61849958-61849977 None:intergenic 35.0%
! ATGATAACACAATAGGTTGG+CGG + chr2_3:61849981-61850000 None:intergenic 35.0%
TATGGTGAAACCTATCATCA+AGG - chr2_3:61850037-61850056 Msa0304510:intron 35.0%
! CATAAGCAAACCTTGATGAT+AGG + chr2_3:61850050-61850069 None:intergenic 35.0%
! CTATCATCAAGGTTTGCTTA+TGG - chr2_3:61850048-61850067 Msa0304510:intron 35.0%
GATCTACTTGCTCTAATGTA+AGG + chr2_3:61850138-61850157 None:intergenic 35.0%
! GTATATTCTCATTGGTGCTT+TGG - chr2_3:61850216-61850235 Msa0304510:CDS 35.0%
! ATATTCTCATTGGTGCTTTG+GGG - chr2_3:61850218-61850237 Msa0304510:CDS 35.0%
TTTGCTCATAGTACTATTCG+AGG + chr2_3:61850301-61850320 None:intergenic 35.0%
!!! CCGCTTTCTCTTGTTTTGTT+TGG - chr2_3:61847167-61847186 Msa0304510:three_prime_UTR 40.0%
CACTCACTCACTCAAGAAAT+TGG - chr2_3:61847241-61847260 Msa0304510:three_prime_UTR 40.0%
ACGGATCTGAAGAGATTTGA+TGG + chr2_3:61847340-61847359 None:intergenic 40.0%
! TGTTAAGGGCATGTTTGGAT+TGG - chr2_3:61847770-61847789 Msa0304510:intron 40.0%
TAATCTACATAGGCCCTGTT+TGG + chr2_3:61848059-61848078 None:intergenic 40.0%
! TTTTCCTTGTGTTCTGCTTC+AGG - chr2_3:61848130-61848149 Msa0304510:intron 40.0%
! GTCTGCACTGATAATATGGA+AGG - chr2_3:61848165-61848184 Msa0304510:intron 40.0%
! CGTTGTTCTTTCTGGAAGTA+TGG - chr2_3:61848225-61848244 Msa0304510:CDS 40.0%
! TCTTTCTGGAAGTATGGAAC+CGG - chr2_3:61848231-61848250 Msa0304510:CDS 40.0%
GATCGTGCATCGTGTAATTA+AGG - chr2_3:61848655-61848674 Msa0304510:intron 40.0%
! TGCTGAATGTGACTTTGAGA+CGG - chr2_3:61848730-61848749 Msa0304510:intron 40.0%
AGCCAGAAGACAATTATGTG+TGG + chr2_3:61848802-61848821 None:intergenic 40.0%
ACACATAATTGTCTTCTGGC+TGG - chr2_3:61848801-61848820 Msa0304510:intron 40.0%
! TGTCTTCTGGCTGGAATATT+AGG - chr2_3:61848810-61848829 Msa0304510:intron 40.0%
TGAGCTTACCAACCTTGATT+TGG - chr2_3:61848932-61848951 Msa0304510:intron 40.0%
GAGCTTACCAACCTTGATTT+GGG - chr2_3:61848933-61848952 Msa0304510:intron 40.0%
!! TGTGGGTCCATTTTTGTATC+TGG - chr2_3:61848956-61848975 Msa0304510:intron 40.0%
!! GTGGGTCCATTTTTGTATCT+GGG - chr2_3:61848957-61848976 Msa0304510:intron 40.0%
CAGGTAGTGACTATGTTGAT+AGG + chr2_3:61848984-61849003 None:intergenic 40.0%
ACATTGTGAACTGATGCCAT+TGG - chr2_3:61849059-61849078 Msa0304510:intron 40.0%
!!! TCCTTCACTTTTTGAACCTC+TGG - chr2_3:61849086-61849105 Msa0304510:CDS 40.0%
ACCAGAGGTTCAAAAAGTGA+AGG + chr2_3:61849090-61849109 None:intergenic 40.0%
CATTTGCAAGTGACAACTTG+TGG - chr2_3:61849141-61849160 Msa0304510:intron 40.0%
AAGTGACAACTTGTGGAAAC+TGG - chr2_3:61849148-61849167 Msa0304510:intron 40.0%
GTACATGAAAGAGGAGATAC+CGG - chr2_3:61849298-61849317 Msa0304510:CDS 40.0%
TACATGAAAGAGGAGATACC+GGG - chr2_3:61849299-61849318 Msa0304510:CDS 40.0%
!! GAGGTTGATGTTCTCACAAA+AGG - chr2_3:61849322-61849341 Msa0304510:CDS 40.0%
TTGGCAGGAGATAACAACTA+TGG - chr2_3:61849514-61849533 Msa0304510:intron 40.0%
TGGCAGGAGATAACAACTAT+GGG - chr2_3:61849515-61849534 Msa0304510:intron 40.0%
ATAACAACTATGGGGATGAC+AGG - chr2_3:61849524-61849543 Msa0304510:intron 40.0%
ACATTATGGGTAGAGCTGTT+GGG - chr2_3:61849587-61849606 Msa0304510:intron 40.0%
TGCTTGAAGATACCTACTTG+TGG - chr2_3:61849730-61849749 Msa0304510:intron 40.0%
CAAACTGTAGGAATTAGGGT+AGG + chr2_3:61849810-61849829 None:intergenic 40.0%
TGCTTGTATTTGTCAATGGC+AGG - chr2_3:61849887-61849906 Msa0304510:intron 40.0%
AGTGGAAAATCATAGCCCAT+TGG + chr2_3:61850096-61850115 None:intergenic 40.0%
!! GTTGACTTGAGAGAGAAAAG+TGG + chr2_3:61850114-61850133 None:intergenic 40.0%
! AGAAACGCAATGGGTTTCGT+TGG - chr2_3:61847300-61847319 Msa0304510:CDS 45.0%
CAAATCTCTTCAGATCCGTC+AGG - chr2_3:61847341-61847360 Msa0304510:intron 45.0%
GGGAAAGAGAAAACTGACCA+AGG + chr2_3:61847386-61847405 None:intergenic 45.0%
AAGTCGACCCAGATCAATGT+AGG + chr2_3:61847465-61847484 None:intergenic 45.0%
!! AAGGCATTGATGTGCATCAC+TGG - chr2_3:61848184-61848203 Msa0304510:intron 45.0%
CCAGAAAGAACAACGACAAC+AGG + chr2_3:61848220-61848239 None:intergenic 45.0%
CCTGTTGTCGTTGTTCTTTC+TGG - chr2_3:61848217-61848236 Msa0304510:intron 45.0%
! CTTTCTGGAAGTATGGAACC+GGG - chr2_3:61848232-61848251 Msa0304510:CDS 45.0%
! TTGCTTACACGTTTGAAGCC+CGG + chr2_3:61848253-61848272 None:intergenic 45.0%
ACCTTCTCATGTTAGAGCCT+TGG - chr2_3:61848763-61848782 Msa0304510:intron 45.0%
! TCCAAGGCTCTAACATGAGA+AGG + chr2_3:61848767-61848786 None:intergenic 45.0%
GTGGATCATCTCATGATCCA+AGG + chr2_3:61848783-61848802 None:intergenic 45.0%
GAAAAAGTTGTTCACGGTGC+TGG - chr2_3:61848832-61848851 Msa0304510:intron 45.0%
!! TACCAACCTTGATTTGGGTG+TGG - chr2_3:61848938-61848957 Msa0304510:intron 45.0%
!! ACCAACCTTGATTTGGGTGT+GGG - chr2_3:61848939-61848958 Msa0304510:intron 45.0%
AGTAGTTCAAACAGCACCAG+AGG + chr2_3:61849105-61849124 None:intergenic 45.0%
CAACGCATGAAGATCAATCC+AGG + chr2_3:61849224-61849243 None:intergenic 45.0%
ACATGAAAGAGGAGATACCG+GGG - chr2_3:61849300-61849319 Msa0304510:CDS 45.0%
GGCAGGAGATAACAACTATG+GGG - chr2_3:61849516-61849535 Msa0304510:intron 45.0%
!! CTGCAAAGGCACCACATTAT+GGG - chr2_3:61849574-61849593 Msa0304510:intron 45.0%
CAACAGCTCTACCCATAATG+TGG + chr2_3:61849588-61849607 None:intergenic 45.0%
CACATTATGGGTAGAGCTGT+TGG - chr2_3:61849586-61849605 Msa0304510:intron 45.0%
! GTTCCTACCTTATGTTGGCT+GGG - chr2_3:61849909-61849928 Msa0304510:intron 45.0%
ATTGTCACCCAGCCAACATA+AGG + chr2_3:61849919-61849938 None:intergenic 45.0%
!!! TTTTTTATTTTTGTATTTTT+AGG - chr2_3:61847527-61847546 Msa0304510:intron 5.0%
!!! TTTTTATTTTTGTATTTTTA+GGG - chr2_3:61847528-61847547 Msa0304510:intron 5.0%
!! ATATAATAATTGATTAAAAT+TGG + chr2_3:61847569-61847588 None:intergenic 5.0%
!!! AATTTTAATCAATTATTATA+TGG - chr2_3:61847568-61847587 Msa0304510:intron 5.0%
!!! ATTTTAATCAATTATTATAT+GGG - chr2_3:61847569-61847588 Msa0304510:intron 5.0%
TTGATGAGGGGGAGATTGTG+AGG - chr2_3:61847739-61847758 Msa0304510:intron 50.0%
CATGCCTGAAGCAGAACACA+AGG + chr2_3:61848137-61848156 None:intergenic 50.0%
AGTAAGGATCCAATTCGCGC+AGG - chr2_3:61848440-61848459 Msa0304510:intron 50.0%
ACAATCTCTCCTGCGCGAAT+TGG + chr2_3:61848452-61848471 None:intergenic 50.0%
TCGGAATCTCTCGTCCCTAA+AGG + chr2_3:61848637-61848656 None:intergenic 50.0%
! AAGTTGTTCACGGTGCTGGA+TGG - chr2_3:61848836-61848855 Msa0304510:intron 50.0%
ACCCACACCCAAATCAAGGT+TGG + chr2_3:61848943-61848962 None:intergenic 50.0%
ATGGACCCACACCCAAATCA+AGG + chr2_3:61848947-61848966 None:intergenic 50.0%
TGTGAGAACATCAACCTCCC+CGG + chr2_3:61849320-61849339 None:intergenic 50.0%
GACAGGCTACTGTATGCTCA+TGG - chr2_3:61849541-61849560 Msa0304510:intron 50.0%
TGTATGCTCATGGCCAGCTT+TGG - chr2_3:61849551-61849570 Msa0304510:intron 50.0%
!! GCTGCAAAGGCACCACATTA+TGG - chr2_3:61849573-61849592 Msa0304510:intron 50.0%
GGCAGGTTCCTACCTTATGT+TGG - chr2_3:61849904-61849923 Msa0304510:intron 50.0%
GGTTCCTACCTTATGTTGGC+TGG - chr2_3:61849908-61849927 Msa0304510:intron 50.0%
TCACCCAGCCAACATAAGGT+AGG + chr2_3:61849915-61849934 None:intergenic 50.0%
CAAGGCTAACAGCCTGAGTG+AGG + chr2_3:61847368-61847387 None:intergenic 55.0%
! CTCACTCAGGCTGTTAGCCT+TGG - chr2_3:61847366-61847385 Msa0304510:intron 55.0%
! TTGTTCACGGTGCTGGATGG+AGG - chr2_3:61848839-61848858 Msa0304510:intron 55.0%
! TGTTCACGGTGCTGGATGGA+GGG - chr2_3:61848840-61848859 Msa0304510:intron 55.0%
TGAAAGAGGAGATACCGGGG+AGG - chr2_3:61849303-61849322 Msa0304510:CDS 55.0%
! ATGGCCAGCTTTGGCTGCAA+AGG - chr2_3:61849560-61849579 Msa0304510:intron 55.0%
GATCCGTCAGGTCCTCACTC+AGG - chr2_3:61847353-61847372 Msa0304510:intron 60.0%
CAGCCTGAGTGAGGACCTGA+CGG + chr2_3:61847359-61847378 None:intergenic 60.0%
GGTGCCTTTGCAGCCAAAGC+TGG + chr2_3:61849567-61849586 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 61847159 61850402 61847159 ID=Msa0304510;Name=Msa0304510
chr2_3 mRNA 61847159 61850402 61847159 ID=Msa0304510-mRNA-1;Parent=Msa0304510;Name=Msa0304510-mRNA-1;_AED=0.11;_eAED=0.11;_QI=150|1|1|1|1|1|8|135|180
chr2_3 exon 61847159 61847344 61847159 ID=Msa0304510-mRNA-1:exon:20586;Parent=Msa0304510-mRNA-1
chr2_3 exon 61847595 61847652 61847595 ID=Msa0304510-mRNA-1:exon:20585;Parent=Msa0304510-mRNA-1
chr2_3 exon 61847953 61848040 61847953 ID=Msa0304510-mRNA-1:exon:20584;Parent=Msa0304510-mRNA-1
chr2_3 exon 61848218 61848263 61848218 ID=Msa0304510-mRNA-1:exon:20583;Parent=Msa0304510-mRNA-1
chr2_3 exon 61848885 61848920 61848885 ID=Msa0304510-mRNA-1:exon:20582;Parent=Msa0304510-mRNA-1
chr2_3 exon 61849074 61849145 61849074 ID=Msa0304510-mRNA-1:exon:20581;Parent=Msa0304510-mRNA-1
chr2_3 exon 61849297 61849409 61849297 ID=Msa0304510-mRNA-1:exon:20580;Parent=Msa0304510-mRNA-1
chr2_3 exon 61850174 61850402 61850174 ID=Msa0304510-mRNA-1:exon:20579;Parent=Msa0304510-mRNA-1
chr2_3 five_prime_UTR 61850253 61850402 61850253 ID=Msa0304510-mRNA-1:five_prime_utr;Parent=Msa0304510-mRNA-1
chr2_3 CDS 61850174 61850252 61850174 ID=Msa0304510-mRNA-1:cds;Parent=Msa0304510-mRNA-1
chr2_3 CDS 61849297 61849409 61849297 ID=Msa0304510-mRNA-1:cds;Parent=Msa0304510-mRNA-1
chr2_3 CDS 61849074 61849145 61849074 ID=Msa0304510-mRNA-1:cds;Parent=Msa0304510-mRNA-1
chr2_3 CDS 61848885 61848920 61848885 ID=Msa0304510-mRNA-1:cds;Parent=Msa0304510-mRNA-1
chr2_3 CDS 61848218 61848263 61848218 ID=Msa0304510-mRNA-1:cds;Parent=Msa0304510-mRNA-1
chr2_3 CDS 61847953 61848040 61847953 ID=Msa0304510-mRNA-1:cds;Parent=Msa0304510-mRNA-1
chr2_3 CDS 61847595 61847652 61847595 ID=Msa0304510-mRNA-1:cds;Parent=Msa0304510-mRNA-1
chr2_3 CDS 61847294 61847344 61847294 ID=Msa0304510-mRNA-1:cds;Parent=Msa0304510-mRNA-1
chr2_3 three_prime_UTR 61847159 61847293 61847159 ID=Msa0304510-mRNA-1:three_prime_utr;Parent=Msa0304510-mRNA-1
Gene Sequence

>Msa0304510

ATGGGTTTCGTTGGTGACACTGTCGATTCCATCAAATCTCTTCAGATCCGTCAGGTCCTCACTCAGGCTGTTAGCCTTGGCATGATTGTTACGTCTGCACTGATAATATGGAAGGCATTGATGTGCATCACTGGCAGTGAATCTCCTGTTGTCGTTGTTCTTTCTGGAAGTATGGAACCGGGCTTCAAACGTGGGGACATCTTGTTCTTACACATGAGTAAGGATCCAATTCGCGCAGGAGAGATTGTTGTATTTAATATAGATGGACGAGAGATTCCGATCGTGCATCGTGTAATTAAGGTACATGAAAGAGGAGATACCGGGGAGGTTGATGTTCTCACAAAAGGAGATAACAACTATGGGGATGACAGGCTACTGTATGCTCATGGCCAGCTTTGGCTGCAAAGGCACCACATTATGGGTAGAGCTGTTGGGTTCCTACCTTATGTTGGCTGGGTGACAATTATCATGACTGAAAAACCTATCATCAAGTATATTCTCATTGGTGCTTTGGGGTTGCTCGTGATAACTTCAAAAGAGTAA

Protein sequence

>Msa0304510

MGFVGDTVDSIKSLQIRQVLTQAVSLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFLHMSKDPIRAGEIVVFNIDGREIPIVHRVIKVHERGDTGEVDVLTKGDNNYGDDRLLYAHGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKE*